Cp4.1LG13g05540 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG13g05540
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionExpansin
LocationCp4.1LG13 : 5442608 .. 5443156 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGCCATCTCTTCCACTTCACTTCCTTCTCTTCACACTTGCAGCAGTTCTCACATCTCCAGTCGCCTCTCATTTCTCGTCTGCAACCTCCTCTCCGTCGCCGGAGGTTGCGCCGTCACTTTCTGAGTGGAGATCTGCTCGGGCCACGTACTATGCTGCTGCCGATCCTCGCGATGCGGTTGGTGGAGCTTGTGGATATGGTGATTTAGTGAAGGCAGGTTATGGCATGGCGACGGTGGGGCTCAGTGAGGCGCTGTTTGAACGCGGTATGATCTGTGGAGCTTGCTTTCAGCTTCGGTGTGTGGAGGACCTCCGGTGGTGTATTCCTGGTACCTCTATCATTGTTACTGTTACGAATTTCTGTGCGCCTAATTATGGCTTTACGGCTGAGGGTGGAGGCCATTGTAACCCTCCTAATAAGCATTTTGTGCTCCCTATTGAGGCGTTTGAGAAGATCGCTATCTGGAAGGCGGGAAACATGCCTGTTCAGTATCGGAGGTATGTGTTCAGTGCCTTCTTTCTTCTGGCTTATTTGTTTTTCTTTTAG

mRNA sequence

ATGTCGCCATCTCTTCCACTTCACTTCCTTCTCTTCACACTTGCAGCAGTTCTCACATCTCCAGTCGCCTCTCATTTCTCGTCTGCAACCTCCTCTCCGTCGCCGGAGGTTGCGCCGTCACTTTCTGAGTGGAGATCTGCTCGGGCCACGTACTATGCTGCTGCCGATCCTCGCGATGCGGTTGGTGGAGCTTGTGGATATGGTGATTTAGTGAAGGCAGGTTATGGCATGGCGACGGTGGGGCTCAGTGAGGCGCTGTTTGAACGCGGTATGATCTGTGGAGCTTGCTTTCAGCTTCGGTGTGTGGAGGACCTCCGGTGGTGTATTCCTGGTACCTCTATCATTGTTACTGTTACGAATTTCTGTGCGCCTAATTATGGCTTTACGGCTGAGGGTGGAGGCCATTGTAACCCTCCTAATAAGCATTTTGTGCTCCCTATTGAGGCGTTTGAGAAGATCGCTATCTGGAAGGCGGGAAACATGCCTGTTCAGTATCGGAGGTATGTGTTCAGTGCCTTCTTTCTTCTGGCTTATTTGTTTTTCTTTTAG

Coding sequence (CDS)

ATGTCGCCATCTCTTCCACTTCACTTCCTTCTCTTCACACTTGCAGCAGTTCTCACATCTCCAGTCGCCTCTCATTTCTCGTCTGCAACCTCCTCTCCGTCGCCGGAGGTTGCGCCGTCACTTTCTGAGTGGAGATCTGCTCGGGCCACGTACTATGCTGCTGCCGATCCTCGCGATGCGGTTGGTGGAGCTTGTGGATATGGTGATTTAGTGAAGGCAGGTTATGGCATGGCGACGGTGGGGCTCAGTGAGGCGCTGTTTGAACGCGGTATGATCTGTGGAGCTTGCTTTCAGCTTCGGTGTGTGGAGGACCTCCGGTGGTGTATTCCTGGTACCTCTATCATTGTTACTGTTACGAATTTCTGTGCGCCTAATTATGGCTTTACGGCTGAGGGTGGAGGCCATTGTAACCCTCCTAATAAGCATTTTGTGCTCCCTATTGAGGCGTTTGAGAAGATCGCTATCTGGAAGGCGGGAAACATGCCTGTTCAGTATCGGAGGTATGTGTTCAGTGCCTTCTTTCTTCTGGCTTATTTGTTTTTCTTTTAG

Protein sequence

MSPSLPLHFLLFTLAAVLTSPVASHFSSATSSPSPEVAPSLSEWRSARATYYAAADPRDAVGGACGYGDLVKAGYGMATVGLSEALFERGMICGACFQLRCVEDLRWCIPGTSIIVTVTNFCAPNYGFTAEGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRRYVFSAFFLLAYLFFF
Homology
[Close]
BLAST of Cp4.1LG13g05540 vs. Swiss-Prot
Match: EXP13_ARATH (Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=2 SV=2)

HSP 1 Score: 268.9 bits (686), Expect = 4.2e-71
Identity = 128/160 (80.00%), Postives = 138/160 (86.25%), Query Frame = 1 

Query: 9   FLLFTLAAVLTSPVASHFSSATSSPSPE-VAPSLSEWRSARATYYAAADPRDAVGGACGY 68
           FLL  L   L+ P   H+SS+TSSPS   V+   SEWR ARATYYAA +PRDAVGGACGY
Sbjct: 4   FLLPLLFLALSPPAICHYSSSTSSPSSSSVSSDASEWRPARATYYAATNPRDAVGGACGY 63

Query: 69  GDLVKAGYGMATVGLSEALFERGMICGACFQLRCVEDLRWCIPGTSIIVTVTNFCAPNYG 128
           GDLVK+GYGMATVGLSE LFERG ICGACF+LRCV+DLRWCIPGTSII+T TNFCAPNYG
Sbjct: 64  GDLVKSGYGMATVGLSETLFERGQICGACFELRCVDDLRWCIPGTSIILTATNFCAPNYG 123

Query: 129 FTAEGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRR 168
           F  +GGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRR
Sbjct: 124 FDPDGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRR 163

[Close]
BLAST of Cp4.1LG13g05540 vs. Swiss-Prot
Match: EXP10_ORYSJ (Expansin-A10 OS=Oryza sativa subsp. japonica GN=EXPA10 PE=2 SV=2)

HSP 1 Score: 211.5 bits (537), Expect = 7.9e-54
Identity = 105/167 (62.87%), Postives = 130/167 (77.84%), Query Frame = 1 

Query: 1   MSPSLPLHFLLFTLAAVLTSPVASHFSSATSSPSPEVAPSLSEWRSARATYYAAADPRDA 60
           M+P L L  +LF L A+ T     H S+  SS       +LSEWRSA+A+YY AADP DA
Sbjct: 1   MAPCLLL--VLFLLPALATGH--QHPSTLGSS-------ALSEWRSAKASYY-AADPEDA 60

Query: 61  VGGACGYGDLVKAGYGMATVGLSEALFERGMICGACFQLRCVEDLRWCIPGTSIIVTVTN 120
           +GGACG+GDL K GYGMATVGLS ALFERG  CG C++++CV+DL++C+PGTSI+VT TN
Sbjct: 61  IGGACGFGDLGKHGYGMATVGLSTALFERGAACGGCYEVKCVDDLKYCLPGTSIVVTATN 120

Query: 121 FCAPNYGFTAEGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRR 168
           FCAPN+G  A+ GG CNPPN HF+LPI++FEKIA+WKAG MP+QYRR
Sbjct: 121 FCAPNFGLPADAGGVCNPPNHHFLLPIQSFEKIALWKAGVMPIQYRR 155

[Close]
BLAST of Cp4.1LG13g05540 vs. Swiss-Prot
Match: EXPA3_ARATH (Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.1e-36
Identity = 72/146 (49.32%), Postives = 97/146 (66.44%), Query Frame = 1 

Query: 23  ASHFSSATSSPSPEVAPSLSEWRSARATYYAAADPRDAVGGACGYGDLVKAGYGMATVGL 82
           AS   +AT++  P V  S   W++A AT+Y  +D    +GGACGYG+L   GYG+ T  L
Sbjct: 16  ASFLLTATNAKIPGVY-SGGPWQNAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAAL 75

Query: 83  SEALFERGMICGACFQLRCVEDLRWCIPGT-SIIVTVTNFCAPNYGFTAEGGGHCNPPNK 142
           S ALF  G  CGACF+++C +D RWC+PG  SI+VT TNFC PN+   ++ GG CNPP +
Sbjct: 76  STALFNNGFSCGACFEIKCTDDPRWCVPGNPSILVTATNFCPPNFAQPSDDGGWCNPPRE 135

Query: 143 HFVLPIEAFEKIAIWKAGNMPVQYRR 168
           HF L +  F KI +++AG +PV YRR
Sbjct: 136 HFDLAMPMFLKIGLYRAGIVPVSYRR 160

[Close]
BLAST of Cp4.1LG13g05540 vs. Swiss-Prot
Match: EXPA8_ORYSJ (Expansin-A8 OS=Oryza sativa subsp. japonica GN=EXPA8 PE=2 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 1.7e-35
Identity = 68/129 (52.71%), Postives = 84/129 (65.12%), Query Frame = 1 

Query: 40  SLSEWRSARATYYAAADPRDAVGGACGYGDLVKAGYGMATVGLSEALFERGMICGACFQL 99
           S ++W  A AT+Y  +D    +GGACGYGDL  AGYG  T  LS ALF  G  CGACF +
Sbjct: 21  SAAKWTPAFATFYGGSDASGTMGGACGYGDLYGAGYGTRTAALSTALFNGGASCGACFTI 80

Query: 100 RC-VEDLRWCIPGTSIIVTVTNFCAPNYGFTAEGGGHCNPPNKHFVLPIEAFEKIAIWKA 159
            C     +WC PGTSI VT TNFC PNY  + + GG CNPP +HF +   A+E IA+++A
Sbjct: 81  ACDTRKTQWCKPGTSITVTATNFCPPNYALSGDAGGWCNPPRRHFDMSQPAWETIAVYRA 140

Query: 160 GNMPVQYRR 168
           G +PV YRR
Sbjct: 141 GIVPVNYRR 149

[Close]
BLAST of Cp4.1LG13g05540 vs. Swiss-Prot
Match: EXPA9_ARATH (Expansin-A9 OS=Arabidopsis thaliana GN=EXPA9 PE=2 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 2.8e-35
Identity = 65/125 (52.00%), Postives = 85/125 (68.00%), Query Frame = 1 

Query: 44  WRSARATYYAAADPRDAVGGACGYGDLVKAGYGMATVGLSEALFERGMICGACFQLRCVE 103
           W +A AT+Y  AD    +GGACGYG+L   GYG+ T  LS ALF  G+ CG+CF+L+C+ 
Sbjct: 32  WINAHATFYGEADASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGSCFELKCIN 91

Query: 104 DLRWCIPGT-SIIVTVTNFCAPNYGFTAEGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMP 163
           D  WC+PG  SI++T TNFC PN+   ++ GG CNPP +HF L +  F  IA +KAG +P
Sbjct: 92  DPGWCLPGNPSILITATNFCPPNFNQASDNGGWCNPPREHFDLAMPMFLSIAKYKAGIVP 151

Query: 164 VQYRR 168
           V YRR
Sbjct: 152 VSYRR 156

[Close]
BLAST of Cp4.1LG13g05540 vs. TrEMBL
Match: A0A0A0KMW4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G333040 PE=4 SV=1)

HSP 1 Score: 333.2 bits (853), Expect = 2.0e-88
Identity = 162/182 (89.01%), Postives = 172/182 (94.51%), Query Frame = 1 

Query: 1   MSPSLPLHFLLFTLAAVLTSPVASHFSSATSSPSPEVAPSLSEWRSARATYYAAADPRDA 60
           MSPSLPLHFL FT+AA+LTSPV+SHFSS TSSPSP+ +PSLS+WRSARATYYAA+DPRDA
Sbjct: 1   MSPSLPLHFL-FTVAALLTSPVSSHFSSTTSSPSPDSSPSLSDWRSARATYYAASDPRDA 60

Query: 61  VGGACGYGDLVKAGYGMATVGLSEALFERGMICGACFQLRCVEDLRWCIPGTSIIVTVTN 120
           VGGACGYGDLVKAGYGMATVGLSE+LFERG ICGACFQLRCVEDLRWCIPGTSIIVTVTN
Sbjct: 61  VGGACGYGDLVKAGYGMATVGLSESLFERGQICGACFQLRCVEDLRWCIPGTSIIVTVTN 120

Query: 121 FCAPNYGFTAEGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRRYVFSAFFLLAYLF 180
           FCAPNYGFTAEGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRRY+  +FFL A   
Sbjct: 121 FCAPNYGFTAEGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRRYILHSFFLPAAFI 180

Query: 181 FF 183
           FF
Sbjct: 181 FF 181

[Close]
BLAST of Cp4.1LG13g05540 vs. TrEMBL
Match: M4DXW9_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 2.2e-71
Identity = 133/167 (79.64%), Postives = 143/167 (85.63%), Query Frame = 1 

Query: 1   MSPSLPLHFLLFTLAAVLTSPVASHFSSATSSPSPEVAPSLSEWRSARATYYAAADPRDA 60
           M  SLPL  LL  L A L+ P  SH+SS+TSSPS  V+ S SEWR ARATYYAA +PRD 
Sbjct: 1   MQLSLPLLLLLLLLLAALSPPATSHYSSSTSSPS-SVSSSASEWRPARATYYAATNPRDE 60

Query: 61  VGGACGYGDLVKAGYGMATVGLSEALFERGMICGACFQLRCVEDLRWCIPGTSIIVTVTN 120
           VGGACGYGDLVK+GYGMATVGLSE LFERG ICGACF+LRCV+DLRWCIPGTSII+T TN
Sbjct: 61  VGGACGYGDLVKSGYGMATVGLSETLFERGQICGACFELRCVDDLRWCIPGTSIILTATN 120

Query: 121 FCAPNYGFTAEGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRR 168
           FCAPNYGF  +GGGHCNPPNKHFVLPIEAF KIAIWKAGNMPVQYRR
Sbjct: 121 FCAPNYGFDPDGGGHCNPPNKHFVLPIEAFGKIAIWKAGNMPVQYRR 166

[Close]
BLAST of Cp4.1LG13g05540 vs. TrEMBL
Match: A0A078HZZ3_BRANA (BnaA05g32450D protein OS=Brassica napus GN=BnaA05g32450D PE=4 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 6.5e-71
Identity = 130/159 (81.76%), Postives = 140/159 (88.05%), Query Frame = 1 

Query: 9   FLLFTLAAVLTSPVASHFSSATSSPSPEVAPSLSEWRSARATYYAAADPRDAVGGACGYG 68
           FLL  L A L+ P  SH+SS+TSSPS   + S+SEWR ARATYYAA +PRD VGGACGYG
Sbjct: 4   FLLLLLLAALSPPATSHYSSSTSSPS---SSSVSEWRPARATYYAATNPRDLVGGACGYG 63

Query: 69  DLVKAGYGMATVGLSEALFERGMICGACFQLRCVEDLRWCIPGTSIIVTVTNFCAPNYGF 128
           DLVK+GYGMATVGLSE LFERG ICGACF+LRCV+DLRWCIPGTSIIVT TNFCAPNYGF
Sbjct: 64  DLVKSGYGMATVGLSETLFERGQICGACFELRCVDDLRWCIPGTSIIVTATNFCAPNYGF 123

Query: 129 TAEGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRR 168
             +GGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRR
Sbjct: 124 DPDGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRR 159

[Close]
BLAST of Cp4.1LG13g05540 vs. TrEMBL
Match: M4ET76_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 6.5e-71
Identity = 130/159 (81.76%), Postives = 140/159 (88.05%), Query Frame = 1 

Query: 9   FLLFTLAAVLTSPVASHFSSATSSPSPEVAPSLSEWRSARATYYAAADPRDAVGGACGYG 68
           FLL  L A L+ P  SH+SS+TSSPS   + S+SEWR ARATYYAA +PRD VGGACGYG
Sbjct: 4   FLLLLLLAALSPPATSHYSSSTSSPS---SSSVSEWRPARATYYAATNPRDLVGGACGYG 63

Query: 69  DLVKAGYGMATVGLSEALFERGMICGACFQLRCVEDLRWCIPGTSIIVTVTNFCAPNYGF 128
           DLVK+GYGMATVGLSE LFERG ICGACF+LRCV+DLRWCIPGTSIIVT TNFCAPNYGF
Sbjct: 64  DLVKSGYGMATVGLSETLFERGQICGACFELRCVDDLRWCIPGTSIIVTATNFCAPNYGF 123

Query: 129 TAEGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRR 168
             +GGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRR
Sbjct: 124 DPDGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRR 159

[Close]
BLAST of Cp4.1LG13g05540 vs. TrEMBL
Match: I1JHS2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_02G240900 PE=4 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 6.5e-71
Identity = 132/167 (79.04%), Postives = 144/167 (86.23%), Query Frame = 1 

Query: 5   LPLHFLLFTLAAVLTSP-VASHFSSATSSPSP---EVAPSLSEWRSARATYYAAADPRDA 64
           L L   +  +A + +SP V SH+SS+T    P   E +P+ SEWRSARATYY AADPRDA
Sbjct: 2   LALTLSILIIATLSSSPLVTSHYSSSTLESPPSSLEASPTFSEWRSARATYYVAADPRDA 61

Query: 65  VGGACGYGDLVKAGYGMATVGLSEALFERGMICGACFQLRCVEDLRWCIPGTSIIVTVTN 124
           VGGACGYGDLVK GYGMATVGLSEALFERG ICGACF+LRCVED+RWCIPGTSIIVT TN
Sbjct: 62  VGGACGYGDLVKGGYGMATVGLSEALFERGQICGACFELRCVEDMRWCIPGTSIIVTATN 121

Query: 125 FCAPNYGFTAEGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRR 168
           FCAPNYGFT++GGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRR
Sbjct: 122 FCAPNYGFTSDGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRR 168

[Close]
BLAST of Cp4.1LG13g05540 vs. TAIR10
Match: AT3G03220.1 (AT3G03220.1 expansin A13)

HSP 1 Score: 268.9 bits (686), Expect = 2.4e-72
Identity = 128/160 (80.00%), Postives = 138/160 (86.25%), Query Frame = 1 

Query: 9   FLLFTLAAVLTSPVASHFSSATSSPSPE-VAPSLSEWRSARATYYAAADPRDAVGGACGY 68
           FLL  L   L+ P   H+SS+TSSPS   V+   SEWR ARATYYAA +PRDAVGGACGY
Sbjct: 4   FLLPLLFLALSPPAICHYSSSTSSPSSSSVSSDASEWRPARATYYAATNPRDAVGGACGY 63

Query: 69  GDLVKAGYGMATVGLSEALFERGMICGACFQLRCVEDLRWCIPGTSIIVTVTNFCAPNYG 128
           GDLVK+GYGMATVGLSE LFERG ICGACF+LRCV+DLRWCIPGTSII+T TNFCAPNYG
Sbjct: 64  GDLVKSGYGMATVGLSETLFERGQICGACFELRCVDDLRWCIPGTSIILTATNFCAPNYG 123

Query: 129 FTAEGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRR 168
           F  +GGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRR
Sbjct: 124 FDPDGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRR 163

[Close]
BLAST of Cp4.1LG13g05540 vs. TAIR10
Match: AT2G37640.1 (AT2G37640.1 Barwin-like endoglucanases superfamily protein)

HSP 1 Score: 154.5 bits (389), Expect = 6.5e-38
Identity = 72/146 (49.32%), Postives = 97/146 (66.44%), Query Frame = 1 

Query: 23  ASHFSSATSSPSPEVAPSLSEWRSARATYYAAADPRDAVGGACGYGDLVKAGYGMATVGL 82
           AS   +AT++  P V  S   W++A AT+Y  +D    +GGACGYG+L   GYG+ T  L
Sbjct: 16  ASFLLTATNAKIPGVY-SGGPWQNAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAAL 75

Query: 83  SEALFERGMICGACFQLRCVEDLRWCIPGT-SIIVTVTNFCAPNYGFTAEGGGHCNPPNK 142
           S ALF  G  CGACF+++C +D RWC+PG  SI+VT TNFC PN+   ++ GG CNPP +
Sbjct: 76  STALFNNGFSCGACFEIKCTDDPRWCVPGNPSILVTATNFCPPNFAQPSDDGGWCNPPRE 135

Query: 143 HFVLPIEAFEKIAIWKAGNMPVQYRR 168
           HF L +  F KI +++AG +PV YRR
Sbjct: 136 HFDLAMPMFLKIGLYRAGIVPVSYRR 160

[Close]
BLAST of Cp4.1LG13g05540 vs. TAIR10
Match: AT5G02260.1 (AT5G02260.1 expansin A9)

HSP 1 Score: 149.8 bits (377), Expect = 1.6e-36
Identity = 65/125 (52.00%), Postives = 85/125 (68.00%), Query Frame = 1 

Query: 44  WRSARATYYAAADPRDAVGGACGYGDLVKAGYGMATVGLSEALFERGMICGACFQLRCVE 103
           W +A AT+Y  AD    +GGACGYG+L   GYG+ T  LS ALF  G+ CG+CF+L+C+ 
Sbjct: 32  WINAHATFYGEADASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGSCFELKCIN 91

Query: 104 DLRWCIPGT-SIIVTVTNFCAPNYGFTAEGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMP 163
           D  WC+PG  SI++T TNFC PN+   ++ GG CNPP +HF L +  F  IA +KAG +P
Sbjct: 92  DPGWCLPGNPSILITATNFCPPNFNQASDNGGWCNPPREHFDLAMPMFLSIAKYKAGIVP 151

Query: 164 VQYRR 168
           V YRR
Sbjct: 152 VSYRR 156

[Close]
BLAST of Cp4.1LG13g05540 vs. TAIR10
Match: AT5G56320.1 (AT5G56320.1 expansin A14)

HSP 1 Score: 148.7 bits (374), Expect = 3.6e-36
Identity = 71/126 (56.35%), Postives = 83/126 (65.87%), Query Frame = 1 

Query: 42  SEWRSARATYYAAADPRDAVGGACGYGDLVKAGYGMATVGLSEALFERGMICGACFQLRC 101
           S W +ARAT+Y  AD    +GGACGYG+L   GYG  T  LS ALF  G  CGACFQ++C
Sbjct: 27  SGWVNARATFYGGADASGTMGGACGYGNLYSQGYGTNTAALSTALFNGGQSCGACFQIKC 86

Query: 102 VEDLRWCIPGTSIIVTVTNFCAPNYGFTAEGGGHCNPPNKHFVLPIEAFEKIAIWKAGNM 161
           V+D +WCI GT I VT TNFC PN+      GG CNPP  HF L    F +IA +KAG +
Sbjct: 87  VDDPKWCIGGT-ITVTGTNFCPPNFAQANNAGGWCNPPQHHFDLAQPIFLRIAQYKAGVV 146

Query: 162 PVQYRR 168
           PVQYRR
Sbjct: 147 PVQYRR 151

[Close]
BLAST of Cp4.1LG13g05540 vs. TAIR10
Match: AT3G29030.1 (AT3G29030.1 expansin A5)

HSP 1 Score: 146.7 bits (369), Expect = 1.4e-35
Identity = 66/127 (51.97%), Postives = 84/127 (66.14%), Query Frame = 1 

Query: 41  LSEWRSARATYYAAADPRDAVGGACGYGDLVKAGYGMATVGLSEALFERGMICGACFQLR 100
           +  W +A AT+Y   D    +GGACGYG+L   GYG+ T  LS ALF++G+ CGACF+L 
Sbjct: 35  MGPWINAHATFYGGGDASGTMGGACGYGNLYSQGYGLETAALSTALFDQGLSCGACFELM 94

Query: 101 CVEDLRWCIPGTSIIVTVTNFCAPNYGFTAEGGGHCNPPNKHFVLPIEAFEKIAIWKAGN 160
           CV D +WCI G SI+VT TNFC P        GG C+PPN HF L    +EKIA++K+G 
Sbjct: 95  CVNDPQWCIKGRSIVVTATNFCPP--------GGACDPPNHHFDLSQPIYEKIALYKSGI 153

Query: 161 MPVQYRR 168
           +PV YRR
Sbjct: 155 IPVMYRR 153

[Close]
BLAST of Cp4.1LG13g05540 vs. NCBI nr
Match: gi|700195746|gb|KGN50923.1| (hypothetical protein Csa_5G333040 [Cucumis sativus])

HSP 1 Score: 333.2 bits (853), Expect = 2.9e-88
Identity = 162/182 (89.01%), Postives = 172/182 (94.51%), Query Frame = 1 

Query: 1   MSPSLPLHFLLFTLAAVLTSPVASHFSSATSSPSPEVAPSLSEWRSARATYYAAADPRDA 60
           MSPSLPLHFL FT+AA+LTSPV+SHFSS TSSPSP+ +PSLS+WRSARATYYAA+DPRDA
Sbjct: 1   MSPSLPLHFL-FTVAALLTSPVSSHFSSTTSSPSPDSSPSLSDWRSARATYYAASDPRDA 60

Query: 61  VGGACGYGDLVKAGYGMATVGLSEALFERGMICGACFQLRCVEDLRWCIPGTSIIVTVTN 120
           VGGACGYGDLVKAGYGMATVGLSE+LFERG ICGACFQLRCVEDLRWCIPGTSIIVTVTN
Sbjct: 61  VGGACGYGDLVKAGYGMATVGLSESLFERGQICGACFQLRCVEDLRWCIPGTSIIVTVTN 120

Query: 121 FCAPNYGFTAEGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRRYVFSAFFLLAYLF 180
           FCAPNYGFTAEGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRRY+  +FFL A   
Sbjct: 121 FCAPNYGFTAEGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRRYILHSFFLPAAFI 180

Query: 181 FF 183
           FF
Sbjct: 181 FF 181

[Close]
BLAST of Cp4.1LG13g05540 vs. NCBI nr
Match: gi|449462354|ref|XP_004148906.1| (PREDICTED: expansin-A13 [Cucumis sativus])

HSP 1 Score: 324.7 bits (831), Expect = 1.0e-85
Identity = 155/167 (92.81%), Postives = 163/167 (97.60%), Query Frame = 1 

Query: 1   MSPSLPLHFLLFTLAAVLTSPVASHFSSATSSPSPEVAPSLSEWRSARATYYAAADPRDA 60
           MSPSLPLHFL FT+AA+LTSPV+SHFSS TSSPSP+ +PSLS+WRSARATYYAA+DPRDA
Sbjct: 1   MSPSLPLHFL-FTVAALLTSPVSSHFSSTTSSPSPDSSPSLSDWRSARATYYAASDPRDA 60

Query: 61  VGGACGYGDLVKAGYGMATVGLSEALFERGMICGACFQLRCVEDLRWCIPGTSIIVTVTN 120
           VGGACGYGDLVKAGYGMATVGLSE+LFERG ICGACFQLRCVEDLRWCIPGTSIIVTVTN
Sbjct: 61  VGGACGYGDLVKAGYGMATVGLSESLFERGQICGACFQLRCVEDLRWCIPGTSIIVTVTN 120

Query: 121 FCAPNYGFTAEGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRR 168
           FCAPNYGFTAEGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRR
Sbjct: 121 FCAPNYGFTAEGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRR 166

[Close]
BLAST of Cp4.1LG13g05540 vs. NCBI nr
Match: gi|659126398|ref|XP_008463163.1| (PREDICTED: expansin-A13 [Cucumis melo])

HSP 1 Score: 322.0 bits (824), Expect = 6.6e-85
Identity = 154/167 (92.22%), Postives = 161/167 (96.41%), Query Frame = 1 

Query: 1   MSPSLPLHFLLFTLAAVLTSPVASHFSSATSSPSPEVAPSLSEWRSARATYYAAADPRDA 60
           MSPSLPLHFL FT+AA LTSPV+SHFSS +SSPSP+  PSLS+WRSARATYYAA+DPRDA
Sbjct: 1   MSPSLPLHFL-FTVAAFLTSPVSSHFSSTSSSPSPDSTPSLSDWRSARATYYAASDPRDA 60

Query: 61  VGGACGYGDLVKAGYGMATVGLSEALFERGMICGACFQLRCVEDLRWCIPGTSIIVTVTN 120
           VGGACGYGDLVKAGYGMATVGLSE+LFERG ICGACFQLRCVEDLRWCIPGTSIIVTVTN
Sbjct: 61  VGGACGYGDLVKAGYGMATVGLSESLFERGQICGACFQLRCVEDLRWCIPGTSIIVTVTN 120

Query: 121 FCAPNYGFTAEGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRR 168
           FCAPNYGFTAEGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRR
Sbjct: 121 FCAPNYGFTAEGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRR 166

[Close]
BLAST of Cp4.1LG13g05540 vs. NCBI nr
Match: gi|923783776|ref|XP_013682577.1| (PREDICTED: expansin-A13-like [Brassica napus])

HSP 1 Score: 277.3 bits (708), Expect = 1.9e-71
Identity = 133/167 (79.64%), Postives = 144/167 (86.23%), Query Frame = 1 

Query: 1   MSPSLPLHFLLFTLAAVLTSPVASHFSSATSSPSPEVAPSLSEWRSARATYYAAADPRDA 60
           M  SLPL  LL  L A L+ P  SH+SS+TSSPS  V+ S SEWR ARATYYAA +PRD 
Sbjct: 1   MQLSLPLLLLLLLLLAALSPPATSHYSSSTSSPS-SVSSSASEWRPARATYYAATNPRDE 60

Query: 61  VGGACGYGDLVKAGYGMATVGLSEALFERGMICGACFQLRCVEDLRWCIPGTSIIVTVTN 120
           VGGACGYGDLVK+GYGMATVGLSE LFERG ICGACF+LRCV+DLRWCIPGTSII+T TN
Sbjct: 61  VGGACGYGDLVKSGYGMATVGLSETLFERGQICGACFELRCVDDLRWCIPGTSIILTATN 120

Query: 121 FCAPNYGFTAEGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRR 168
           FCAPNYGF ++GGGHCNPPNKHFVLPIEAF KIAIWKAGNMPVQYRR
Sbjct: 121 FCAPNYGFESDGGGHCNPPNKHFVLPIEAFGKIAIWKAGNMPVQYRR 166

[Close]
BLAST of Cp4.1LG13g05540 vs. NCBI nr
Match: gi|685266326|ref|XP_009119148.1| (PREDICTED: expansin-A13-like [Brassica rapa])

HSP 1 Score: 276.6 bits (706), Expect = 3.2e-71
Identity = 133/167 (79.64%), Postives = 143/167 (85.63%), Query Frame = 1 

Query: 1   MSPSLPLHFLLFTLAAVLTSPVASHFSSATSSPSPEVAPSLSEWRSARATYYAAADPRDA 60
           M  SLPL  LL  L A L+ P  SH+SS+TSSPS  V+ S SEWR ARATYYAA +PRD 
Sbjct: 1   MQLSLPLLLLLLLLLAALSPPATSHYSSSTSSPS-SVSSSASEWRPARATYYAATNPRDE 60

Query: 61  VGGACGYGDLVKAGYGMATVGLSEALFERGMICGACFQLRCVEDLRWCIPGTSIIVTVTN 120
           VGGACGYGDLVK+GYGMATVGLSE LFERG ICGACF+LRCV+DLRWCIPGTSII+T TN
Sbjct: 61  VGGACGYGDLVKSGYGMATVGLSETLFERGQICGACFELRCVDDLRWCIPGTSIILTATN 120

Query: 121 FCAPNYGFTAEGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRR 168
           FCAPNYGF  +GGGHCNPPNKHFVLPIEAF KIAIWKAGNMPVQYRR
Sbjct: 121 FCAPNYGFDPDGGGHCNPPNKHFVLPIEAFGKIAIWKAGNMPVQYRR 166

The following BLAST results are available for this feature:
BLAST of Cp4.1LG13g05540 vs. Swiss-Prot
Match NameE-valueIdentityDescription
EXP13_ARATH4.2e-7180.00Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=2 SV=2[more]
EXP10_ORYSJ7.9e-5462.87Expansin-A10 OS=Oryza sativa subsp. japonica GN=EXPA10 PE=2 SV=2[more]
EXPA3_ARATH1.1e-3649.32Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 SV=1[more]
EXPA8_ORYSJ1.7e-3552.71Expansin-A8 OS=Oryza sativa subsp. japonica GN=EXPA8 PE=2 SV=1[more]
EXPA9_ARATH2.8e-3552.00Expansin-A9 OS=Arabidopsis thaliana GN=EXPA9 PE=2 SV=1[more]
BLAST of Cp4.1LG13g05540 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KMW4_CUCSA2.0e-8889.01Uncharacterized protein OS=Cucumis sativus GN=Csa_5G333040 PE=4 SV=1[more]
M4DXW9_BRARP2.2e-7179.64Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1[more]
A0A078HZZ3_BRANA6.5e-7181.76BnaA05g32450D protein OS=Brassica napus GN=BnaA05g32450D PE=4 SV=1[more]
M4ET76_BRARP6.5e-7181.76Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1[more]
I1JHS2_SOYBN6.5e-7179.04Uncharacterized protein OS=Glycine max GN=GLYMA_02G240900 PE=4 SV=1[more]
BLAST of Cp4.1LG13g05540 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G03220.12.4e-7280.00 expansin A13[more]
AT2G37640.16.5e-3849.32 Barwin-like endoglucanases superfamily protein[more]
AT5G02260.11.6e-3652.00 expansin A9[more]
AT5G56320.13.6e-3656.35 expansin A14[more]
AT3G29030.11.4e-3551.97 expansin A5[more]
BLAST of Cp4.1LG13g05540 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700195746|gb|KGN50923.1|2.9e-8889.01hypothetical protein Csa_5G333040 [Cucumis sativus][more]
gi|449462354|ref|XP_004148906.1|1.0e-8592.81PREDICTED: expansin-A13 [Cucumis sativus][more]
gi|659126398|ref|XP_008463163.1|6.6e-8592.22PREDICTED: expansin-A13 [Cucumis melo][more]
gi|923783776|ref|XP_013682577.1|1.9e-7179.64PREDICTED: expansin-A13-like [Brassica napus][more]
gi|685266326|ref|XP_009119148.1|3.2e-7179.64PREDICTED: expansin-A13-like [Brassica rapa][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005576extracellular region
Vocabulary: Biological Process
TermDefinition
GO:0009664plant-type cell wall organization
Vocabulary: INTERPRO
TermDefinition
IPR009009RlpA-like_DPBB
IPR007118Expan_Lol_pI
IPR007112Expansin/allergen_DPBB_dom
IPR002963Expansin
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009664 plant-type cell wall organization
cellular_component GO:0005618 cell wall
cellular_component GO:0005576 extracellular region
cellular_component GO:0016020 membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG13g05540.1Cp4.1LG13g05540.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002963ExpansinPRINTSPR01226EXPANSINcoord: 74..88
score: 6.1E-23coord: 114..124
score: 6.1E-23coord: 150..163
score: 6.1E-23coord: 101..112
score: 6.1E-23coord: 133..150
score: 6.1
IPR007112Expansin/pollen allergen, DPBB domainSMARTSM00837dpbb_1coord: 79..165
score: 2.2
IPR007112Expansin/pollen allergen, DPBB domainPROFILEPS50842EXPANSIN_EG45coord: 62..167
score: 23
IPR007118Expansin/Lol pIPRINTSPR01225EXPANSNFAMLYcoord: 83..101
score: 4.4E-19coord: 61..79
score: 4.4E-19coord: 158..174
score: 4.4E-19coord: 43..58
score: 4.4
IPR009009RlpA-like protein, double-psi beta-barrel domainGENE3DG3DSA:2.40.40.10coord: 35..167
score: 3.1
IPR009009RlpA-like protein, double-psi beta-barrel domainPFAMPF03330DPBB_1coord: 80..165
score: 1.6
IPR009009RlpA-like protein, double-psi beta-barrel domainunknownSSF50685Barwin-like endoglucanasescoord: 43..167
score: 3.49
NoneNo IPR availablePANTHERPTHR31867FAMILY NOT NAMEDcoord: 5..21
score: 2.8E-112coord: 37..167
score: 2.8E
NoneNo IPR availablePANTHERPTHR31867:SF3EXPANSIN-A13coord: 5..21
score: 2.8E-112coord: 37..167
score: 2.8E