Cp4.1LG12g08300 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG12g08300
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG12 : 6481338 .. 6481631 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTTGTCTGGGAATATTGTTTGGCTGCAACAGCTCTCGCTCCTCAACTGACTATCTTCTGTCAGCTTTACTCCTCATAGCCATTCTTTCCTCTCTCCGTCTCCTCTGCTACTTTCTCACCCGCTTCTTGAAGCGATACCGTCAACGTCGCTACGACCCGAGTCCCGACCCCGCCATCCAACTCCAGCCGCAGATATCAACTCCTCTGCCAGATAACAAGCTTCTTGCCCCTGCTGCACCTGCACCTGCACCTGCACATGCTCTTCCTCCTCTTCCTGCTTTCTCGAGATAA

mRNA sequence

ATGGTTTGTCTGGGAATATTGTTTGGCTGCAACAGCTCTCGCTCCTCAACTGACTATCTTCTGTCAGCTTTACTCCTCATAGCCATTCTTTCCTCTCTCCGTCTCCTCTGCTACTTTCTCACCCGCTTCTTGAAGCGATACCGTCAACGTCGCTACGACCCGAGTCCCGACCCCGCCATCCAACTCCAGCCGCAGATATCAACTCCTCTGCCAGATAACAAGCTTCTTGCCCCTGCTGCACCTGCACCTGCACCTGCACATGCTCTTCCTCCTCTTCCTGCTTTCTCGAGATAA

Coding sequence (CDS)

ATGGTTTGTCTGGGAATATTGTTTGGCTGCAACAGCTCTCGCTCCTCAACTGACTATCTTCTGTCAGCTTTACTCCTCATAGCCATTCTTTCCTCTCTCCGTCTCCTCTGCTACTTTCTCACCCGCTTCTTGAAGCGATACCGTCAACGTCGCTACGACCCGAGTCCCGACCCCGCCATCCAACTCCAGCCGCAGATATCAACTCCTCTGCCAGATAACAAGCTTCTTGCCCCTGCTGCACCTGCACCTGCACCTGCACATGCTCTTCCTCCTCTTCCTGCTTTCTCGAGATAA

Protein sequence

MVCLGILFGCNSSRSSTDYLLSALLLIAILSSLRLLCYFLTRFLKRYRQRRYDPSPDPAIQLQPQISTPLPDNKLLAPAAPAPAPAHALPPLPAFSR
Homology
[Close]
BLAST of Cp4.1LG12g08300 vs. TrEMBL
Match: A0A0A0KAI0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G447070 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 3.8e-17
Identity = 61/104 (58.65%), Postives = 70/104 (67.31%), Query Frame = 1 

Query: 1  MVCLGILFGCNSSRSSTDYLLSALLLIAILSSLRLLCYFLTRFLKRYRQRRYDPSPDPAI 60
          MVCLGILFGC  SR+ TDYLLSALLLI ILSSLRLLCY ++RFLKR   RR +  PDP  
Sbjct: 1  MVCLGILFGCKRSRTPTDYLLSALLLIVILSSLRLLCYLVSRFLKR---RRNNQHPDPTS 60

Query: 61 QLQPQIS-------TPLPDNKLLAPAAPAPAPAHALPPLPAFSR 98
          ++QPQ         TP+PDNK+L PA         + PL AFSR
Sbjct: 61 EVQPQTDVAHLQQPTPMPDNKVLTPA--------DVLPLAAFSR 93

[Close]
BLAST of Cp4.1LG12g08300 vs. TrEMBL
Match: A0A0S3SFL5_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.07G022600 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.3e-06
Identity = 34/63 (53.97%), Postives = 44/63 (69.84%), Query Frame = 1 

Query: 1  MVCLGILFGCNSSRSSTDYLLSALLLIAILSSLRLLCYFLTRFLKRYRQRRYDPSPDPAI 60
          MVCLG LFGC  S S   YLLSAL+ ++IL  LRLLCY L R LKR+R R    +P+ ++
Sbjct: 10 MVCLGALFGCRRSNSFVAYLLSALVSVSILCVLRLLCYGLARLLKRWRGR----NPNSSL 68

Query: 61 QLQ 64
          ++Q
Sbjct: 70 EMQ 68

[Close]
BLAST of Cp4.1LG12g08300 vs. NCBI nr
Match: gi|700190159|gb|KGN45392.1| (hypothetical protein Csa_7G447070 [Cucumis sativus])

HSP 1 Score: 95.5 bits (236), Expect = 5.4e-17
Identity = 61/104 (58.65%), Postives = 70/104 (67.31%), Query Frame = 1 

Query: 1  MVCLGILFGCNSSRSSTDYLLSALLLIAILSSLRLLCYFLTRFLKRYRQRRYDPSPDPAI 60
          MVCLGILFGC  SR+ TDYLLSALLLI ILSSLRLLCY ++RFLKR   RR +  PDP  
Sbjct: 1  MVCLGILFGCKRSRTPTDYLLSALLLIVILSSLRLLCYLVSRFLKR---RRNNQHPDPTS 60

Query: 61 QLQPQIS-------TPLPDNKLLAPAAPAPAPAHALPPLPAFSR 98
          ++QPQ         TP+PDNK+L PA         + PL AFSR
Sbjct: 61 EVQPQTDVAHLQQPTPMPDNKVLTPA--------DVLPLAAFSR 93

[Close]
BLAST of Cp4.1LG12g08300 vs. NCBI nr
Match: gi|965604442|dbj|BAT91618.1| (hypothetical protein VIGAN_07022600 [Vigna angularis var. angularis])

HSP 1 Score: 59.7 bits (143), Expect = 3.3e-06
Identity = 34/63 (53.97%), Postives = 44/63 (69.84%), Query Frame = 1 

Query: 1  MVCLGILFGCNSSRSSTDYLLSALLLIAILSSLRLLCYFLTRFLKRYRQRRYDPSPDPAI 60
          MVCLG LFGC  S S   YLLSAL+ ++IL  LRLLCY L R LKR+R R    +P+ ++
Sbjct: 10 MVCLGALFGCRRSNSFVAYLLSALVSVSILCVLRLLCYGLARLLKRWRGR----NPNSSL 68

Query: 61 QLQ 64
          ++Q
Sbjct: 70 EMQ 68

The following BLAST results are available for this feature:
BLAST of Cp4.1LG12g08300 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG12g08300 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KAI0_CUCSA3.8e-1758.65Uncharacterized protein OS=Cucumis sativus GN=Csa_7G447070 PE=4 SV=1[more]
A0A0S3SFL5_PHAAN2.3e-0653.97Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.07G022600 PE=... [more]
BLAST of Cp4.1LG12g08300 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG12g08300 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190159|gb|KGN45392.1|5.4e-1758.65hypothetical protein Csa_7G447070 [Cucumis sativus][more]
gi|965604442|dbj|BAT91618.1|3.3e-0653.97hypothetical protein VIGAN_07022600 [Vigna angularis var. angularis][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG12g08300.1Cp4.1LG12g08300.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG12g08300CmoCh17G007550Cucurbita moschata (Rifu)cmocpeB335
Cp4.1LG12g08300Csa7G447070Cucumber (Chinese Long) v2cpecuB161
Cp4.1LG12g08300CSPI07G21590Wild cucumber (PI 183967)cpecpiB163
Cp4.1LG12g08300CsaV3_7G033490Cucumber (Chinese Long) v3cpecucB0188
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG12g08300Melon (DHL92) v3.5.1cpemeB123
Cp4.1LG12g08300Melon (DHL92) v3.5.1cpemeB132
Cp4.1LG12g08300Cucumber (Gy14) v2cgybcpeB306
Cp4.1LG12g08300Cucumber (Gy14) v2cgybcpeB906
Cp4.1LG12g08300Melon (DHL92) v3.6.1cpemedB150
Cp4.1LG12g08300Melon (DHL92) v3.6.1cpemedB159
Cp4.1LG12g08300Silver-seed gourdcarcpeB0171
Cp4.1LG12g08300Silver-seed gourdcarcpeB0280
Cp4.1LG12g08300Silver-seed gourdcarcpeB1049
Cp4.1LG12g08300Silver-seed gourdcarcpeB1424
Cp4.1LG12g08300Cucumber (Chinese Long) v3cpecucB0156
Cp4.1LG12g08300Wax gourdcpewgoB0190
Cp4.1LG12g08300Wax gourdcpewgoB0208
Cp4.1LG12g08300Cucurbita pepo (Zucchini)cpecpeB157
Cp4.1LG12g08300Cucurbita pepo (Zucchini)cpecpeB178
Cp4.1LG12g08300Cucurbita pepo (Zucchini)cpecpeB181
Cp4.1LG12g08300Cucurbita pepo (Zucchini)cpecpeB182
Cp4.1LG12g08300Cucurbita pepo (Zucchini)cpecpeB187
Cp4.1LG12g08300Cucumber (Gy14) v1cgycpeB0936
Cp4.1LG12g08300Cucurbita maxima (Rimu)cmacpeB257
Cp4.1LG12g08300Cucurbita maxima (Rimu)cmacpeB371
Cp4.1LG12g08300Cucurbita maxima (Rimu)cmacpeB466
Cp4.1LG12g08300Cucurbita maxima (Rimu)cmacpeB903
Cp4.1LG12g08300Cucurbita moschata (Rifu)cmocpeB221
Cp4.1LG12g08300Cucurbita moschata (Rifu)cmocpeB426
Cp4.1LG12g08300Cucurbita moschata (Rifu)cmocpeB839
Cp4.1LG12g08300Bottle gourd (USVL1VR-Ls)cpelsiB113
Cp4.1LG12g08300Bottle gourd (USVL1VR-Ls)cpelsiB127
Cp4.1LG12g08300Watermelon (Charleston Gray)cpewcgB126
Cp4.1LG12g08300Watermelon (Charleston Gray)cpewcgB148
Cp4.1LG12g08300Watermelon (97103) v1cpewmB131
Cp4.1LG12g08300Watermelon (97103) v1cpewmB145