Cp4.1LG12g06620 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG12g06620
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	BPS1-like protein
Location	Cp4.1LG12 : 7491613 .. 7492515 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCCTTTTGCTTCAAACCTTCAATAAGCTCTGTTCCAAGCTTCACGATCGCCATGGCCGCCATGGATGTAAAGCTTCTTCCTCCGTTTCTTGTCTTCAAGCTATGGAGGACGATGTGTCGTCTTGCTTGAATCAATTTTTATTGTCGAGTTCCGATTTGGAACTGTTGTCGTTTTCTTGGCTTCTTCAGCTTCTTCAGGCTCTGCCGATCCTGCATCAGGCGTTTGCCAAATTGGTTTTTAATTTGGAGCACCCCGTTGGAAAATGGGGCGCCCATTTGGTTGATGGGTATTTGAATTATAGTCTCAATTTGCTTGATCTTCTAAATTCCATCAGTTTTTCTTTATCCCAATTGGGGGAATCTCGGGTTTCTGTTTCTTATGCGTTGAGCTTAATTCAGAGCTCCCCTTCAATGGCGGTTTCTCGTCTGGAACTGATTGTTCCGATGAGGGGTTTTGAAAGGTTGGTGATCGGAGGAACTGTGGGAGATCAGAAGAACGGTGGCTCCGGGAAGGAGTTGGCGGTCGAGAAAGCTTTGGCAACAATGGAGGGAATTGGGTATTGGATTTGTGGGGTTGTGCTTTCTGGTTGTGAGGGAGATTCGACGGCGTATTTGGAGATGAGAAAACTAGCAGCCGGTGTGGCGATTCCGGCGTTTAAAGCATTGGATTCCGTGATCTTGGCGGTGGTTTCAGGGAAGGGGAGTGTGCCAGAGGAGGTGCGCGAGGTGAACAATGCGGCGGCGGAGATCATCGGTAGCGGCGAGGCGGCGGAAGAGATGAGGAGGAGATTGGGGAGGTTGGAGAAGGCGGTGGAGAGATTGGGGAAGGAGGTGGATGAGAGATTCTCGGAGGTTCTCGACGGAAGAAGCCAATTGCTTGATGTTTTCAGACATTCCTAA

mRNA sequence

ATGCTCCTTTTGCTTCAAACCTTCAATAAGCTCTGTTCCAAGCTTCACGATCGCCATGGCCGCCATGGATGTAAAGCTTCTTCCTCCGTTTCTTGTCTTCAAGCTATGGAGGACGATGTGTCGTCTTGCTTGAATCAATTTTTATTGTCGAGTTCCGATTTGGAACTGTTGTCGTTTTCTTGGCTTCTTCAGCTTCTTCAGGCTCTGCCGATCCTGCATCAGGCGTTTGCCAAATTGGTTTTTAATTTGGAGCACCCCGTTGGAAAATGGGGCGCCCATTTGGTTGATGGGTATTTGAATTATAGTCTCAATTTGCTTGATCTTCTAAATTCCATCAGTTTTTCTTTATCCCAATTGGGGGAATCTCGGGTTTCTGTTTCTTATGCGTTGAGCTTAATTCAGAGCTCCCCTTCAATGGCGGTTTCTCGTCTGGAACTGATTGTTCCGATGAGGGGTTTTGAAAGGTTGGTGATCGGAGGAACTGTGGGAGATCAGAAGAACGGTGGCTCCGGGAAGGAGTTGGCGGTCGAGAAAGCTTTGGCAACAATGGAGGGAATTGGGTATTGGATTTGTGGGGTTGTGCTTTCTGGTTGTGAGGGAGATTCGACGGCGTATTTGGAGATGAGAAAACTAGCAGCCGGTGTGGCGATTCCGGCGTTTAAAGCATTGGATTCCGTGATCTTGGCGGTGGTTTCAGGGAAGGGGAGTGTGCCAGAGGAGGTGCGCGAGGTGAACAATGCGGCGGCGGAGATCATCGGTAGCGGCGAGGCGGCGGAAGAGATGAGGAGGAGATTGGGGAGGTTGGAGAAGGCGGTGGAGAGATTGGGGAAGGAGGTGGATGAGAGATTCTCGGAGGTTCTCGACGGAAGAAGCCAATTGCTTGATGTTTTCAGACATTCCTAA

Coding sequence (CDS)

ATGCTCCTTTTGCTTCAAACCTTCAATAAGCTCTGTTCCAAGCTTCACGATCGCCATGGCCGCCATGGATGTAAAGCTTCTTCCTCCGTTTCTTGTCTTCAAGCTATGGAGGACGATGTGTCGTCTTGCTTGAATCAATTTTTATTGTCGAGTTCCGATTTGGAACTGTTGTCGTTTTCTTGGCTTCTTCAGCTTCTTCAGGCTCTGCCGATCCTGCATCAGGCGTTTGCCAAATTGGTTTTTAATTTGGAGCACCCCGTTGGAAAATGGGGCGCCCATTTGGTTGATGGGTATTTGAATTATAGTCTCAATTTGCTTGATCTTCTAAATTCCATCAGTTTTTCTTTATCCCAATTGGGGGAATCTCGGGTTTCTGTTTCTTATGCGTTGAGCTTAATTCAGAGCTCCCCTTCAATGGCGGTTTCTCGTCTGGAACTGATTGTTCCGATGAGGGGTTTTGAAAGGTTGGTGATCGGAGGAACTGTGGGAGATCAGAAGAACGGTGGCTCCGGGAAGGAGTTGGCGGTCGAGAAAGCTTTGGCAACAATGGAGGGAATTGGGTATTGGATTTGTGGGGTTGTGCTTTCTGGTTGTGAGGGAGATTCGACGGCGTATTTGGAGATGAGAAAACTAGCAGCCGGTGTGGCGATTCCGGCGTTTAAAGCATTGGATTCCGTGATCTTGGCGGTGGTTTCAGGGAAGGGGAGTGTGCCAGAGGAGGTGCGCGAGGTGAACAATGCGGCGGCGGAGATCATCGGTAGCGGCGAGGCGGCGGAAGAGATGAGGAGGAGATTGGGGAGGTTGGAGAAGGCGGTGGAGAGATTGGGGAAGGAGGTGGATGAGAGATTCTCGGAGGTTCTCGACGGAAGAAGCCAATTGCTTGATGTTTTCAGACATTCCTAA

Protein sequence

MLLLLQTFNKLCSKLHDRHGRHGCKASSSVSCLQAMEDDVSSCLNQFLLSSSDLELLSFSWLLQLLQALPILHQAFAKLVFNLEHPVGKWGAHLVDGYLNYSLNLLDLLNSISFSLSQLGESRVSVSYALSLIQSSPSMAVSRLELIVPMRGFERLVIGGTVGDQKNGGSGKELAVEKALATMEGIGYWICGVVLSGCEGDSTAYLEMRKLAAGVAIPAFKALDSVILAVVSGKGSVPEEVREVNNAAAEIIGSGEAAEEMRRRLGRLEKAVERLGKEVDERFSEVLDGRSQLLDVFRHS

Homology

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BLAST of Cp4.1LG12g06620 vs. Swiss-Prot
Match: U496D_ORYSJ (UPF0496 protein 4 OS=Oryza sativa subsp. japonica GN=Os10g0513300 PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.7e-06
Identity = 67/289 (23.18%), Postives = 119/289 (41.18%), Query Frame = 1


Query: 23  GCKASSSVSCLQAMEDDVSSCLNQFLLSSSDLELLSFSWLLQLLQALPILHQAFAKLVFN 82
           G   S  +  L A  +D  +   + L   +  ++L+ SW+   +  L  LH   A L+ +
Sbjct: 25  GAHLSRKLQELLASYEDALALSLRKLKPEAASDVLTLSWMRLAVDCLSELHTNIANLITD 84

Query: 83  LEHPVGKWGAHLVDGYLNYSLNLLDLLNSISFSLSQLGESRVSVSYALSLIQSSPSM-AV 142
           LE PV  W    VD YLN S+ LLD+  ++S  LS+L + ++ + YAL ++ S   + + 
Sbjct: 85  LELPVSDWDDKWVDIYLNSSVKLLDICIALSSELSRLDQGQLLLQYALHVLGSESGVPSQ 144

Query: 143 SRLELIVP-MRGFERLV----------------IGGTVGDQKNGGSGKELAVEKALATME 202
            +L+   P +R +  LV                + G +   K   S K   + +AL  +E
Sbjct: 145 EQLKRAEPSLREWMELVGVRCARLVSCSATLQELAGNLSLMKVKNSAKGKVLMRALYGIE 204

Query: 203 GIGYWICGVVLSGCEGDSTAYLEMRKLAAGVAIPAFKALDSVILAVVSGKGSVPEEVREV 262
            +  ++C + ++   G     +E+          AF  L + +           E  R++
Sbjct: 205 SVTVFVCSIFVAVLSGSPKPLVELHVPEKFGWSQAFNDLHTAV---------SEELTRQL 264

Query: 263 NNAAAEIIGSGEAAEEMRRRL------GRLEKAVERLGKEVDERFSEVL 288
           +  +   +   E  E   RRL       +LE+    L   V     EV+
Sbjct: 265 SGGSVAAVKELEEVEACARRLHVLASTSQLEEEAANLANAVSHTEEEVM 304

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BLAST of Cp4.1LG12g06620 vs. Swiss-Prot
Match: BPS1_ARATH (Protein BPS1, chloroplastic OS=Arabidopsis thaliana GN=BPS1 PE=2 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.5e-06
Identity = 33/120 (27.50%), Postives = 67/120 (55.83%), Query Frame = 1


Query: 26  ASSSVSCLQAMEDDVSSCLNQFLLSSSDLELLSFSWLLQLLQALPILHQAFAKLVFNLEH 85
           +S  +  L   E +++S +++ L+     ++L+ SW+ Q +++L   H     L+ +LE 
Sbjct: 29  SSKLLPLLNNFETNLASSISK-LVPKEKSDILTVSWMKQAMESLCETHNGIKTLITDLEL 88

Query: 86  PVGKWGAHLVDGYLNYSLNLLDLLNSISFSLSQLGESRVSVSYALSLIQSSPSMAVSRLE 145
           PV  W    VD YL+ S+ LLDL N+ S  L++L +  + + +AL  ++++    +S+ +
Sbjct: 89  PVSDWEDKWVDVYLDISVKLLDLCNAFSSELTRLNQGHLLLQFALHNLEANSPQNLSKAQ 147

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BLAST of Cp4.1LG12g06620 vs. TrEMBL
Match: A0A0A0K882_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G420820 PE=4 SV=1)

HSP 1 Score: 387.1 bits (993), Expect = 1.9e-104
Identity = 215/303 (70.96%), Postives = 251/303 (82.84%), Query Frame = 1


Query: 1   MLLLLQTFNKLCSKLHDRH-GRHGCK-ASSSVSCLQAMEDDVSSCLNQFLLSSSDLELLS 60
           M L+LQTFNK CSKL +RH  RHG K AS S+S L A E+DVSSC N  LLS+S  + LS
Sbjct: 1   MPLVLQTFNKFCSKLDNRHPNRHGSKLASFSLSRLHAFEEDVSSCFNHLLLSTSASKPLS 60

Query: 61  FSWLLQLLQAL-PILHQAFAKLVFNLEHPVGKWGAHLVDGYLNYSLNLLDLLNSISFSLS 120
           F + LQLLQ L P++H++FAKLV +LE+PVG+W A LVDGY+NY+LNLLDLLNSISFSL+
Sbjct: 61  FHYFLQLLQGLLPVIHKSFAKLVVDLEYPVGRWRADLVDGYINYTLNLLDLLNSISFSLT 120

Query: 121 QLGESRVSVSYALSLIQSSPSMAVSRLELIVPMRGFERLVIGGTVGDQKNGGSGKELAVE 180
           QLG SRV +SYALSLI+SSP+MAVSRL+ IV  R  E L I   V D K G SG+E A++
Sbjct: 121 QLGNSRVLLSYALSLIESSPAMAVSRLKPIVLKRYSEGLEIKANVKDLKKGCSGEERAIQ 180

Query: 181 KALATMEGIGYWICGVVLSGCEGDSTAYLEMRKLAAGVAIPAFKALDSVILAVVSGKGSV 240
           KALATMEGIGYW+CG+VLSGCEGDSTAYLEMRKLA+GV +PAFKALDS+ILAVVSGKGSV
Sbjct: 181 KALATMEGIGYWVCGIVLSGCEGDSTAYLEMRKLASGVTVPAFKALDSMILAVVSGKGSV 240

Query: 241 PEEVREVNNAAAEII-GSGEAAEEMRRRLGRLEKAVERLGKEVDERFSEVLDGRSQLLDV 300
           P+EV EVN A A ++ G GEA EEMR+R+GRLEK VE LGKEVD RFSEVLDGR++LLDV
Sbjct: 241 PDEVEEVNVAVAMVVDGGGEAVEEMRKRMGRLEKTVEGLGKEVDGRFSEVLDGRTRLLDV 300

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BLAST of Cp4.1LG12g06620 vs. TrEMBL
Match: F6HHW9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0158g00090 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 2.6e-53
Identity = 131/308 (42.53%), Postives = 195/308 (63.31%), Query Frame = 1


Query: 1   MLLLLQTFNK---LCSKLHDRHGRHGCKASSSVSCLQAMEDDVSSCLNQFLLSSSD-LEL 60
           M+LL++   K   L SKL + H  H   + + +  LQA   DVS+CLNQ LL+ +   E+
Sbjct: 1   MVLLVERLGKSLRLHSKLDNHHHHHHHGSEALLGSLQAFHSDVSNCLNQLLLNPNPGSEI 60

Query: 61  LSFSWLLQLLQALPILHQAFAKLVFNLEHPVGKWGAHLVDGYLNYSLNLLDLLNSISFSL 120
           LS  W  +  +  P +++AFAKLV  +++P+  W    ++ YLNYSL+LL+LLNSI+ S+
Sbjct: 61  LSLFWFQRFFELFPAINKAFAKLVVRIDYPMSIWEVDFMEEYLNYSLSLLELLNSINASI 120

Query: 121 SQLGESRVSVSYALSLIQSSPSMAVSRLELIVPMRGFERLVIGGTVGDQKNGGSGKELAV 180
           S LG +R S+S+ALSL++ S S A+  L+ I P+   +          ++   SGKE   
Sbjct: 121 SHLGHARFSLSHALSLVEHSSSSAMEHLKAIQPLGEGKACKEENKRSVRERPFSGKEEVS 180

Query: 181 EKALATMEGIGYWICGVVLSGCEGDSTAYLEMRKLAAGVAIPAFKALDSVILAVVSGKGS 240
            +AL  M+ IG+W+CG+VLSG  GD+  YLEMRKLA   A  + K LD+ +  V+  + S
Sbjct: 181 HQALMEMKSIGFWVCGIVLSGLSGDAQPYLEMRKLADSSANSSLKGLDAGVHEVIMERSS 240

Query: 241 VPEEVREVNNAA-----AEIIGSG-EAAEEMRRRLGRLEKAVERLGKEVDERFSEVLDGR 299
           +P+EV+EVN+A      A ++G G  AAEE++RRL  LEK ++ + KEV++ FSEVL GR
Sbjct: 241 IPKEVKEVNDAVPCLLNAMVMGKGNNAAEELKRRLEVLEKTLDSVQKEVEDLFSEVLAGR 300

[Close]

BLAST of Cp4.1LG12g06620 vs. TrEMBL
Match: A0A061DW09_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_005819 PE=4 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 8.5e-52
Identity = 131/304 (43.09%), Postives = 189/304 (62.17%), Query Frame = 1


Query: 1   MLLLLQTFNKLCSKLHDRHG-RHGCKASSSVSCLQAMEDDVSSCLNQFLLSSSD-LELLS 60
           M+LL+ T +KL SKL + H  R   +A    + LQA   DVS+CLNQ LL+S    E+LS
Sbjct: 1   MVLLVDTLSKLYSKLENHHHHRQQSEADVLSASLQAFRSDVSNCLNQLLLNSKPGSEILS 60

Query: 61  FSWLLQLLQALPILHQAFAKLVFNLEHPVGKWGAHLVDGYLNYSLNLLDLLNSISFSLSQ 120
           FSW+ Q  + LP++++AFAKLV ++++P+  W    VD YLNY L+LL+LLNS+S SLS 
Sbjct: 61  FSWIQQCFELLPLINRAFAKLVVDIDYPMSSWEVASVDEYLNYGLHLLELLNSVSSSLSH 120

Query: 121 LGESRVSVSYALSLIQSSPSMAVSRLELIVPMRGFERLVIGGTVGD-QKNGGSGKELAVE 180
           L  +R+S ++AL+L+++SPS+A+  L+ I P    +        GD  +   S KE  V 
Sbjct: 121 LAHARLSFAHALTLVENSPSLAIKHLKAIQPQSSSKDYKWQENKGDGDEKFSSCKEKVVN 180

Query: 181 KALATMEGIGYWICGVVLSGCEGDSTAYLEMRKLAAGVAIPAFKALDSVILAVVSGKGSV 240
            AL  ++ I +W+ GVVL+   G++  YLE+++L A         +DS+I  V+  KG V
Sbjct: 181 LALMEIKAISFWVSGVVLATLSGEAKPYLEIKQLIARFNSALLNGVDSIISEVIVEKGEV 240

Query: 241 PEEVREVNNAAAEII-------GSGEAAEEMRRRLGRLEKAVERLGKEVDERFSEVLDGR 295
             EV++VNNAAA +         S +AA E+ RRLG  EK +E L KEVD  FS+VL GR
Sbjct: 241 LREVKDVNNAAASLASAMASGESSSDAARELERRLGVFEKQLEALEKEVDNLFSKVLAGR 300

[Close]

BLAST of Cp4.1LG12g06620 vs. TrEMBL
Match: M5XEG5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008924mg PE=4 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 1.8e-49
Identity = 131/307 (42.67%), Postives = 196/307 (63.84%), Query Frame = 1


Query: 1   MLLLLQTFNKLCSKLHD-RHGRHGCKASSSVSCLQAMEDDVSSCLNQFLLSS-SDLELLS 60
           M+LL+Q F+K  SKL +  H +H  ++ +  + L+A +  VS+CLN+  LSS S LE+ S
Sbjct: 1   MILLVQKFDKFYSKLENFHHQKHNHQSQALTASLEAFKSHVSNCLNKLSLSSKSGLEIPS 60

Query: 61  FSWLLQLLQALPILHQAFAKLVFNLEHPVGKWGAHLVDGYLNYSLNLLDLLNSISFSLSQ 120
           FSW+ Q  + LPI++ AFAKLV  +++PV KW A  VD YL YSLNLL+L NSIS SLS 
Sbjct: 61  FSWIQQCFELLPIINHAFAKLVVAIDYPVSKWEAASVDEYLKYSLNLLELCNSISSSLSH 120

Query: 121 LGESRVSVSYALSLIQ-SSPSMAVSRLELIVPMRGFERLVIGGT--VGDQKNGGSGKELA 180
           LG++R+S+++ALSL++ SS S+A+  L+ I P    + L   G   +G  +     K+  
Sbjct: 121 LGKARLSLAHALSLVENSSLSLALKHLKPIQPKGLNKELRFQGNEEIGKPRCPNISKQAV 180

Query: 181 VEKALATMEGIGYWICGVVLSGCEGDSTAYLEMRKLAAGVAIPAFKALDSVILAVVSGKG 240
           +++AL  M+G+ +W+CG+++SG  G++  YLEMR             LD     V+  + 
Sbjct: 181 IDQALVVMQGMVFWVCGILMSGLVGEAKPYLEMRSSGGRFVDSWLPGLDLRASEVIVERN 240

Query: 241 SVPEEVREVNNAAAEI---IGSG----EAAEEMRRRLGRLEKAVERLGKEVDERFSEVLD 296
            V +EV+++++A A +   IG+G    EAAEE++RRL   EK VE  GKEVD  F++VL 
Sbjct: 241 GVLKEVKQLDDAVAGLAAAIGTGKSSDEAAEELKRRLEVFEKLVEGFGKEVDCLFNKVLA 300

[Close]

BLAST of Cp4.1LG12g06620 vs. TrEMBL
Match: V4TKL8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032181mg PE=4 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 3.0e-49
Identity = 124/309 (40.13%), Postives = 193/309 (62.46%), Query Frame = 1


Query: 1   MLLLLQTFNKLCSKLHDRHGRHGCKASSSVSCLQAMEDDVSSCLNQFLLSSSD-LELLSF 60
           M+LL++  +KL  KL + H  H  ++ +  +  QA + ++S CLNQ   ++    E  SF
Sbjct: 1   MVLLVERLSKLYCKL-EGHLHHSHESEALQASFQAFQSNLSVCLNQLSFTTKPGSEFFSF 60

Query: 61  SWLLQLLQALPILHQAFAKLVFNLEHPVGKWGAHLVDGYLNYSLNLLDLLNSISFSLSQL 120
            W+ Q  + LP +++AFAKLV ++++P+ KW A  V+ YLNYSL LL+LLNSI+ ++S L
Sbjct: 61  PWIQQCFELLPSINKAFAKLVVDIDYPMSKWEADSVEEYLNYSLCLLELLNSITSTISHL 120

Query: 121 GESRVSVSYALSLIQSSPSMAVSRLELIVPMRGFERLVI---GGTVGDQKNGGSGKELAV 180
           G++R+++S+AL L++ S ++A+ RL  I       R  +       GD+    + KE  +
Sbjct: 121 GQARLALSHALGLVEKSRALAIKRLSAIQVKSSSPRKELKEPEDKEGDEAKAFANKERVI 180

Query: 181 EKALATMEGIGYWICGVVLSGCEGDSTAYLEMRKLAAGVAIPAFKALDSVILAVVSGKGS 240
            +AL  ++ IG+W CGV+L+G  GD+  +L+MRK + G +  A   LDS I  V+ GKG 
Sbjct: 181 HQALIEIKSIGFWACGVILAGLSGDAEHFLKMRK-SQGFSNSALSKLDSSICEVIKGKGG 240

Query: 241 VPEEVREVNN------AAAEIIGSGEAAEEMRRRLGRLEKAVERLGKEVDERFSEVLDGR 300
           V +EV+E+N+      AAA+   S   AEE++RRL   EK ++ LGKEVD  FS++L GR
Sbjct: 241 VLKEVKELNDSAACLAAAADTSKSRGVAEELQRRLDVFEKLLDSLGKEVDHLFSKLLAGR 300

[Close]

BLAST of Cp4.1LG12g06620 vs. TAIR10
Match: AT1G01550.1 (AT1G01550.1 Protein of unknown function (DUF793))

HSP 1 Score: 53.9 bits (128), Expect = 2.0e-07
Identity = 33/120 (27.50%), Postives = 67/120 (55.83%), Query Frame = 1


Query: 26  ASSSVSCLQAMEDDVSSCLNQFLLSSSDLELLSFSWLLQLLQALPILHQAFAKLVFNLEH 85
           +S  +  L   E +++S +++ L+     ++L+ SW+ Q +++L   H     L+ +LE 
Sbjct: 29  SSKLLPLLNNFETNLASSISK-LVPKEKSDILTVSWMKQAMESLCETHNGIKTLITDLEL 88

Query: 86  PVGKWGAHLVDGYLNYSLNLLDLLNSISFSLSQLGESRVSVSYALSLIQSSPSMAVSRLE 145
           PV  W    VD YL+ S+ LLDL N+ S  L++L +  + + +AL  ++++    +S+ +
Sbjct: 89  PVSDWEDKWVDVYLDISVKLLDLCNAFSSELTRLNQGHLLLQFALHNLEANSPQNLSKAQ 147

[Close]

BLAST of Cp4.1LG12g06620 vs. NCBI nr
Match: gi|449436701|ref|XP_004136131.1| (PREDICTED: UPF0496 protein 4-like [Cucumis sativus])

HSP 1 Score: 387.1 bits (993), Expect = 2.8e-104
Identity = 215/303 (70.96%), Postives = 251/303 (82.84%), Query Frame = 1


Query: 1   MLLLLQTFNKLCSKLHDRH-GRHGCK-ASSSVSCLQAMEDDVSSCLNQFLLSSSDLELLS 60
           M L+LQTFNK CSKL +RH  RHG K AS S+S L A E+DVSSC N  LLS+S  + LS
Sbjct: 1   MPLVLQTFNKFCSKLDNRHPNRHGSKLASFSLSRLHAFEEDVSSCFNHLLLSTSASKPLS 60

Query: 61  FSWLLQLLQAL-PILHQAFAKLVFNLEHPVGKWGAHLVDGYLNYSLNLLDLLNSISFSLS 120
           F + LQLLQ L P++H++FAKLV +LE+PVG+W A LVDGY+NY+LNLLDLLNSISFSL+
Sbjct: 61  FHYFLQLLQGLLPVIHKSFAKLVVDLEYPVGRWRADLVDGYINYTLNLLDLLNSISFSLT 120

Query: 121 QLGESRVSVSYALSLIQSSPSMAVSRLELIVPMRGFERLVIGGTVGDQKNGGSGKELAVE 180
           QLG SRV +SYALSLI+SSP+MAVSRL+ IV  R  E L I   V D K G SG+E A++
Sbjct: 121 QLGNSRVLLSYALSLIESSPAMAVSRLKPIVLKRYSEGLEIKANVKDLKKGCSGEERAIQ 180

Query: 181 KALATMEGIGYWICGVVLSGCEGDSTAYLEMRKLAAGVAIPAFKALDSVILAVVSGKGSV 240
           KALATMEGIGYW+CG+VLSGCEGDSTAYLEMRKLA+GV +PAFKALDS+ILAVVSGKGSV
Sbjct: 181 KALATMEGIGYWVCGIVLSGCEGDSTAYLEMRKLASGVTVPAFKALDSMILAVVSGKGSV 240

Query: 241 PEEVREVNNAAAEII-GSGEAAEEMRRRLGRLEKAVERLGKEVDERFSEVLDGRSQLLDV 300
           P+EV EVN A A ++ G GEA EEMR+R+GRLEK VE LGKEVD RFSEVLDGR++LLDV
Sbjct: 241 PDEVEEVNVAVAMVVDGGGEAVEEMRKRMGRLEKTVEGLGKEVDGRFSEVLDGRTRLLDV 300

[Close]

BLAST of Cp4.1LG12g06620 vs. NCBI nr
Match: gi|731414789|ref|XP_010659289.1| (PREDICTED: protein BPS1, chloroplastic-like [Vitis vinifera])

HSP 1 Score: 217.2 bits (552), Expect = 3.8e-53
Identity = 131/308 (42.53%), Postives = 195/308 (63.31%), Query Frame = 1


Query: 1   MLLLLQTFNK---LCSKLHDRHGRHGCKASSSVSCLQAMEDDVSSCLNQFLLSSSD-LEL 60
           M+LL++   K   L SKL + H  H   + + +  LQA   DVS+CLNQ LL+ +   E+
Sbjct: 1   MVLLVERLGKSLRLHSKLDNHHHHHHHGSEALLGSLQAFHSDVSNCLNQLLLNPNPGSEI 60

Query: 61  LSFSWLLQLLQALPILHQAFAKLVFNLEHPVGKWGAHLVDGYLNYSLNLLDLLNSISFSL 120
           LS  W  +  +  P +++AFAKLV  +++P+  W    ++ YLNYSL+LL+LLNSI+ S+
Sbjct: 61  LSLFWFQRFFELFPAINKAFAKLVVRIDYPMSIWEVDFMEEYLNYSLSLLELLNSINASI 120

Query: 121 SQLGESRVSVSYALSLIQSSPSMAVSRLELIVPMRGFERLVIGGTVGDQKNGGSGKELAV 180
           S LG +R S+S+ALSL++ S S A+  L+ I P+   +          ++   SGKE   
Sbjct: 121 SHLGHARFSLSHALSLVEHSSSSAMEHLKAIQPLGEGKACKEENKRSVRERPFSGKEEVS 180

Query: 181 EKALATMEGIGYWICGVVLSGCEGDSTAYLEMRKLAAGVAIPAFKALDSVILAVVSGKGS 240
            +AL  M+ IG+W+CG+VLSG  GD+  YLEMRKLA   A  + K LD+ +  V+  + S
Sbjct: 181 HQALMEMKSIGFWVCGIVLSGLSGDAQPYLEMRKLADSSANSSLKGLDAGVHEVIMERSS 240

Query: 241 VPEEVREVNNAA-----AEIIGSG-EAAEEMRRRLGRLEKAVERLGKEVDERFSEVLDGR 299
           +P+EV+EVN+A      A ++G G  AAEE++RRL  LEK ++ + KEV++ FSEVL GR
Sbjct: 241 IPKEVKEVNDAVPCLLNAMVMGKGNNAAEELKRRLEVLEKTLDSVQKEVEDLFSEVLAGR 300

[Close]

BLAST of Cp4.1LG12g06620 vs. NCBI nr
Match: gi|590724343|ref|XP_007052440.1| (Uncharacterized protein TCM_005819 [Theobroma cacao])

HSP 1 Score: 212.2 bits (539), Expect = 1.2e-51
Identity = 131/304 (43.09%), Postives = 189/304 (62.17%), Query Frame = 1


Query: 1   MLLLLQTFNKLCSKLHDRHG-RHGCKASSSVSCLQAMEDDVSSCLNQFLLSSSD-LELLS 60
           M+LL+ T +KL SKL + H  R   +A    + LQA   DVS+CLNQ LL+S    E+LS
Sbjct: 1   MVLLVDTLSKLYSKLENHHHHRQQSEADVLSASLQAFRSDVSNCLNQLLLNSKPGSEILS 60

Query: 61  FSWLLQLLQALPILHQAFAKLVFNLEHPVGKWGAHLVDGYLNYSLNLLDLLNSISFSLSQ 120
           FSW+ Q  + LP++++AFAKLV ++++P+  W    VD YLNY L+LL+LLNS+S SLS 
Sbjct: 61  FSWIQQCFELLPLINRAFAKLVVDIDYPMSSWEVASVDEYLNYGLHLLELLNSVSSSLSH 120

Query: 121 LGESRVSVSYALSLIQSSPSMAVSRLELIVPMRGFERLVIGGTVGD-QKNGGSGKELAVE 180
           L  +R+S ++AL+L+++SPS+A+  L+ I P    +        GD  +   S KE  V 
Sbjct: 121 LAHARLSFAHALTLVENSPSLAIKHLKAIQPQSSSKDYKWQENKGDGDEKFSSCKEKVVN 180

Query: 181 KALATMEGIGYWICGVVLSGCEGDSTAYLEMRKLAAGVAIPAFKALDSVILAVVSGKGSV 240
            AL  ++ I +W+ GVVL+   G++  YLE+++L A         +DS+I  V+  KG V
Sbjct: 181 LALMEIKAISFWVSGVVLATLSGEAKPYLEIKQLIARFNSALLNGVDSIISEVIVEKGEV 240

Query: 241 PEEVREVNNAAAEII-------GSGEAAEEMRRRLGRLEKAVERLGKEVDERFSEVLDGR 295
             EV++VNNAAA +         S +AA E+ RRLG  EK +E L KEVD  FS+VL GR
Sbjct: 241 LREVKDVNNAAASLASAMASGESSSDAARELERRLGVFEKQLEALEKEVDNLFSKVLAGR 300

[Close]

BLAST of Cp4.1LG12g06620 vs. NCBI nr
Match: gi|1009129007|ref|XP_015881542.1| (PREDICTED: protein BPS1, chloroplastic-like [Ziziphus jujuba])

HSP 1 Score: 209.9 bits (533), Expect = 6.1e-51
Identity = 131/303 (43.23%), Postives = 189/303 (62.38%), Query Frame = 1


Query: 1   MLLLLQTFNKLCSKLHDRHGRHGCKASSSVSCLQAMEDDVSSCLNQFLLSSSD-LELLSF 60
           M+LL+    KL +K   RH   GCK+ +  S L+A   DVS+ LN+  ++S   LE+LSF
Sbjct: 1   MVLLVPKIGKLYTKQESRH--LGCKSEALSSALEAFRSDVSNGLNKLSVNSKPRLEILSF 60

Query: 61  SWLLQLLQALPILHQAFAKLVFNLEHPVGKWGAHLVDGYLNYSLNLLDLLNSISFSLSQL 120
           SW+ Q  + + I+++AFAKLV +++ P+ KW A  V+ YL YSLNLL+LLNSIS S+S L
Sbjct: 61  SWIQQCFELINIINKAFAKLVVDIDCPMNKWEAASVEEYLKYSLNLLELLNSISLSISNL 120

Query: 121 GESRVSVSYALSLIQSSPSMAVSRLELIVPMRGFERLVIGGTVGDQKNGG-SGKELAVEK 180
           G SR+ +S+ALSL++ SPS+A+  L+    M   +         D K    SGKE  + +
Sbjct: 121 GHSRLRISHALSLVEESPSLAIESLKASHTMNSSKEFKRNMNKEDGKEKSYSGKERVIHE 180

Query: 181 ALATMEGIGYWICGVVLSGCEGDSTAYLEMRKLAAG-VAIPAFKALDSVILAVVSGKGSV 240
           A+  ME +G+WICG++LSG  GD   Y EMRK ++  V   +F  LDS I   +  K S 
Sbjct: 181 AMIVMESMGFWICGILLSGICGDEKPYSEMRKFSSRLVVFSSFPRLDSSICEAIMEKKSE 240

Query: 241 PEEVREVNNAAAEIIGS------GEAAEEMRRRLGRLEKAVERLGKEVDERFSEVLDGRS 295
             E++E+ +A A ++ +       + AEE++RRL + EK +E LGKEVD  F EVL+GR+
Sbjct: 241 LVELKELKDAEACLVAAITIGKYRDGAEELQRRLEKFEKLLEGLGKEVDHVFKEVLNGRN 300

[Close]

BLAST of Cp4.1LG12g06620 vs. NCBI nr
Match: gi|645251184|ref|XP_008231562.1| (PREDICTED: protein BPS1, chloroplastic-like [Prunus mume])

HSP 1 Score: 205.3 bits (521), Expect = 1.5e-49
Identity = 133/307 (43.32%), Postives = 195/307 (63.52%), Query Frame = 1


Query: 1   MLLLLQTFNKLCSKLHD-RHGRHGCKASSSVSCLQAMEDDVSSCLNQFLLSS-SDLELLS 60
           M+LL+Q F+K  SKL +  H +H  ++ +  + L+A +  VS+CLN+  LSS S LE+ S
Sbjct: 1   MVLLVQKFDKFYSKLENFHHHKHNHQSQALTASLEAFKSHVSNCLNKLSLSSKSGLEIPS 60

Query: 61  FSWLLQLLQALPILHQAFAKLVFNLEHPVGKWGAHLVDGYLNYSLNLLDLLNSISFSLSQ 120
           FSW+ Q    LPI++ AFAKLV  +++PV KW A  VD YL YSLNLL+L NSIS SLS 
Sbjct: 61  FSWIQQCFGLLPIINHAFAKLVVAIDYPVSKWEAASVDEYLKYSLNLLELCNSISSSLSH 120

Query: 121 LGESRVSVSYALSLIQ-SSPSMAVSRLELIVPMRGFERLVIGGT--VGDQKNGGSGKELA 180
           LG++R+S+++ALSL++ SS S+A+  L+ I P    + L   G   +G  +     K+  
Sbjct: 121 LGKARLSLAHALSLVENSSLSLALKHLKPIQPKVLNKELRFQGNEEIGKPRCSNISKQAV 180

Query: 181 VEKALATMEGIGYWICGVVLSGCEGDSTAYLEMRKLAAGVAIPAFKALDSVILAVVSGKG 240
           +++AL  M+G+ +W+CG+++SG  G++  YLEMR             LD     V+  + 
Sbjct: 181 IDQALVVMQGMVFWVCGILMSGLVGEAKPYLEMRSSGGRFVDSWLPGLDLRASEVIVERN 240

Query: 241 SVPEEVREVNNAAAEI---IGSG----EAAEEMRRRLGRLEKAVERLGKEVDERFSEVLD 296
            V +EV+E+++A A +   IG+G    EAAEE+RRRL   EK VE  GKEVD  F++VL 
Sbjct: 241 GVLKEVKELDDAVAGLAAAIGTGKSSDEAAEELRRRLEVFEKLVEGFGKEVDCLFNKVLA 300

The following BLAST results are available for this feature:

BLAST of Cp4.1LG12g06620 vs. Swiss-Prot


Match Name	E-value	Identity	Description
U496D_ORYSJ	2.7e-06	23.18	UPF0496 protein 4 OS=Oryza sativa subsp. japonica GN=Os10g0513300 PE=2 SV=1	[more]
BPS1_ARATH	3.5e-06	27.50	Protein BPS1, chloroplastic OS=Arabidopsis thaliana GN=BPS1 PE=2 SV=1	[more]

BLAST of Cp4.1LG12g06620 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K882_CUCSA	1.9e-104	70.96	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G420820 PE=4 SV=1	[more]
F6HHW9_VITVI	2.6e-53	42.53	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0158g00090 PE=4 SV=...	[more]
A0A061DW09_THECC	8.5e-52	43.09	Uncharacterized protein OS=Theobroma cacao GN=TCM_005819 PE=4 SV=1	[more]
M5XEG5_PRUPE	1.8e-49	42.67	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008924mg PE=4 SV=1	[more]
V4TKL8_9ROSI	3.0e-49	40.13	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032181mg PE=4 SV=1	[more]

BLAST of Cp4.1LG12g06620 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G01550.1	2.0e-07	27.50	Protein of unknown function (DUF793)	[more]

BLAST of Cp4.1LG12g06620 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449436701\|ref\|XP_004136131.1\|	2.8e-104	70.96	PREDICTED: UPF0496 protein 4-like [Cucumis sativus]	[more]
gi\|731414789\|ref\|XP_010659289.1\|	3.8e-53	42.53	PREDICTED: protein BPS1, chloroplastic-like [Vitis vinifera]	[more]
gi\|590724343\|ref\|XP_007052440.1\|	1.2e-51	43.09	Uncharacterized protein TCM_005819 [Theobroma cacao]	[more]
gi\|1009129007\|ref\|XP_015881542.1\|	6.1e-51	43.23	PREDICTED: protein BPS1, chloroplastic-like [Ziziphus jujuba]	[more]
gi\|645251184\|ref\|XP_008231562.1\|	1.5e-49	43.32	PREDICTED: protein BPS1, chloroplastic-like [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG12g06620.1	Cp4.1LG12g06620.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 258..278 scor
None	No IPR available	PANTHER	PTHR31509	FAMILY NOT NAMED	coord: 33..299 score: 1.1
None	No IPR available	PANTHER	PTHR31509:SF13	SUBFAMILY NOT NAMED	coord: 33..299 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG12g06620	Cucsa.128220	Cucumber (Gy14) v1	cgycpeB0334
Cp4.1LG12g06620	CmaCh17G009780	Cucurbita maxima (Rimu)	cmacpeB371
Cp4.1LG12g06620	CmaCh01G002400	Cucurbita maxima (Rimu)	cmacpeB465
Cp4.1LG12g06620	CmaCh08G005050	Cucurbita maxima (Rimu)	cmacpeB902
Cp4.1LG12g06620	CmoCh01G002490	Cucurbita moschata (Rifu)	cmocpeB425
Cp4.1LG12g06620	CmoCh17G009490	Cucurbita moschata (Rifu)	cmocpeB335
Cp4.1LG12g06620	CmoCh08G004970	Cucurbita moschata (Rifu)	cmocpeB839
Cp4.1LG12g06620	Cla017290	Watermelon (97103) v1	cpewmB141
Cp4.1LG12g06620	Cla015208	Watermelon (97103) v1	cpewmB131
Cp4.1LG12g06620	Csa3G686210	Cucumber (Chinese Long) v2	cpecuB137
Cp4.1LG12g06620	Csa7G420820	Cucumber (Chinese Long) v2	cpecuB161
Cp4.1LG12g06620	MELO3C024000	Melon (DHL92) v3.5.1	cpemeB133
Cp4.1LG12g06620	MELO3C023587	Melon (DHL92) v3.5.1	cpemeB123
Cp4.1LG12g06620	ClCG09G004450	Watermelon (Charleston Gray)	cpewcgB126
Cp4.1LG12g06620	ClCG10G012150	Watermelon (Charleston Gray)	cpewcgB134
Cp4.1LG12g06620	CSPI07G18860	Wild cucumber (PI 183967)	cpecpiB163
Cp4.1LG12g06620	CSPI03G29470	Wild cucumber (PI 183967)	cpecpiB138
Cp4.1LG12g06620	Lsi02G025400	Bottle gourd (USVL1VR-Ls)	cpelsiB113
Cp4.1LG12g06620	MELO3C023587.2	Melon (DHL92) v3.6.1	cpemedB150
Cp4.1LG12g06620	MELO3C024000.2	Melon (DHL92) v3.6.1	cpemedB160
Cp4.1LG12g06620	CsaV3_7G030690	Cucumber (Chinese Long) v3	cpecucB0188
Cp4.1LG12g06620	CsaV3_3G031910	Cucumber (Chinese Long) v3	cpecucB0158
Cp4.1LG12g06620	Bhi09G000593	Wax gourd	cpewgoB0201
Cp4.1LG12g06620	Bhi11G001158	Wax gourd	cpewgoB0171
Cp4.1LG12g06620	CsGy3G027310	Cucumber (Gy14) v2	cgybcpeB308
Cp4.1LG12g06620	Carg13418	Silver-seed gourd	carcpeB0631
Cp4.1LG12g06620	Carg07335	Silver-seed gourd	carcpeB1070

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG12g06620	Cp4.1LG17g07960	Cucurbita pepo (Zucchini)	cpecpeB157
Cp4.1LG12g06620	Cp4.1LG02g15610	Cucurbita pepo (Zucchini)	cpecpeB181

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG12g06620	Cucurbita pepo (Zucchini)	cpecpeB185
Cp4.1LG12g06620	Cucurbita maxima (Rimu)	cmacpeB260
Cp4.1LG12g06620	Cucurbita moschata (Rifu)	cmocpeB224
Cp4.1LG12g06620	Bottle gourd (USVL1VR-Ls)	cpelsiB116
Cp4.1LG12g06620	Cucumber (Gy14) v2	cgybcpeB906