Cp4.1LG12g06610 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG12g06610
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG12 : 7512986 .. 7514802 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GGCAAGCTTCGGCTCCACCGGATGCCCCTTCACCACCGCCACCCGGTACCGGCTGATGATCGAGGCGGCGACGTATTTCATTTGATAGTACGCGAAATCCCTTCCCAGACACAGCCGAGGACCGCCGTTGAAGGCGGTGAATCGATACGCTGATTCGCTCATGAACCGACCGTCTTTCATCCATCTCTCAGGTTTGAATTCGCGACAATCTTTCCCCCAAATCGCTTCCATTCTTCCCATTGCGTATATAGCGTAGATGATTTTTGTTCCTTTCTTCAGAATCGTTCCGTCTGGGAATACATCGTCCTCCACGACCTGAATCGGACGGGTAATTGATTAGGTTTCTGAAATCTTTCGAAATAGGAATGTGTATGAGTGATTAGTTACCTCTTTGTGATCGACTGGAACTGATGGATATAATCTTAGGGCTTCGGAAATCGCCGCGTGCAAATACTCCATTTTCTTGATTTCCTCTGGTTTGAACACTAACGAATCGAATCGGAACTCTCTGGTTTTGGCTTCTTCTCGTTCACCGACGATTCTGTAAATTTCTGCTAGAATTTTGTCCTCCACGTCGGGATTTCGATCGAGCAACCAGAAGAACCAACTCAATGCGACGGAAGACGTGTCTCTTCCGGCGAGTATGAAATTGACGCAAATATCTCTGAGAAACTTGTCGGAGAATGACCGCCCTTGCTCGTCTCTTAGCCTCATAAATACGGTTAATAGGTCGGATCTTTGGTTATCGGCTTGTGGTTGCGCCGTCGTGGAGAGTTCTCTCTTCCGTGTTTGAATCACGTTCTCTGCAAATTCGTCGACGGCTTGTATCGATTGCTTCAGCCTCTTCTCCACTCCCAAGTTCAGGTACCTGCTTAATGGTAAATTAATCAAGCAATTAGTTGTTTAATTACTTCTAATTATAGAGTTTTTTCTTAACAGATTGTCTGAAAAATGATTTGATTTCACTATTGTAAATACCTCAAGATTTTCCATACGAACGTAGGTGTGATGAAGCGTAGAACAGTGACTTCAGTCGCATCCTCAAAGGCCTTAGCAAATGGAATCTCCGGCAAGCCGCCGCTCAAGCAGCCGGGATCCACCCCAAAGGCAATCATACACACATTGTCAAACGTCAATCTCAGAAGAACATCCTGCAAGTCCACTGCCGTCCTCCGTCCCACGAAATCCTCCAACACTGTTTCCAACCTCAAGTGCACGAGCTCCACCAGCGACTCCACCGTCATCTGTCGGAACCTCGCCGAGTGAAACTCAATGCTAGCCACCTTCCTCTGTCGTTGCCACGTCTCGTCGTCAGCCCCGAATATTCCATCACCGAGAAGGTCTCTCACCGTGTCGCGGAAGAATGGCCCTTTAGGGTAGGAGGGAAATTTGGTCTTGAGAAGGTGCTCCAAGTTTCGGGGATCAGCAGTGACTACACAATTGAGACTACTAAACCACGGTCCTCGAAATTGAAATGTACCCTTATGACGGCGGAGGAGGTCAGTAATCCATTCGTAGAGATTCCCACGTGCTGCTGTGATCAGAGACGGTAACATTCCAACGATCGGCCAAACAGGCAAGCCATATCGTCGTCGTTGTCTAACGACATGGATGGCGAAGAACACGAAAAGAGCGAAAGAGATCTCCAAGATTTGGACATCGAGGAGCGGCCAGAGCCCGAACTTTCCATCGGAAACCAAAGCGGGCAGGGCGGAGGAGGAGGAGGAGGAGGAGAGGTTGCCGGAATCCATCATAGGTTTGTGATGAAGGAATGGAATTGCATGGGAAAACATGGAGGAAGCTTTGTTGGTAAAATG

mRNA sequence

GGCAAGCTTCGGCTCCACCGGATGCCCCTTCACCACCGCCACCCGGTACCGGCTGATGATCGAGGCGGCGACGTATTTCATTTGATAGTACGCGAAATCCCTTCCCAGACACAGCCGAGGACCGCCGTTGAAGGCGAATCGTTCCGTCTGGGAATACATCGTCCTCCACGACCTGAATCGGACGGAATTTTGTCCTCCACGTCGGGATTTCGATCGAGCAACCAGAAGAACCAACTCAATGCGACGGAAGACGTGTCTCTTCCGGCGAGTATGAAATTGACGCAAATATCTCTGAGAAACTTGTCGGAGAATGACCGCCCTTGCTCGTCTCTTAGCCTCATAAATACGGTCGGATCTTTGGTTATCGGCTTGTGGTTGCGCCGTCGTGGAGAGTTCTCTCTTCCGTGTTTGAATCACGTTCTCTGCAAATTCGTCGACGGCTTGTATCGATTGCTTCAGCCTCTTCTCCACTCCCAAGTTCAGAACAGTGACTTCAGTCGCATCCTCAAAGGCCTTAGCAAATGGAATCTCCGGCAAGCCGCCGCTCAAGCAGCCGGGATCCACCCCAAAGGCAATCATACACACATTGTCAAACGTCAATCTCAGAAGAACATCCTGCAAGTCCACTGCCGTCCTCCGTCCCACGAAATCCTCCAACACTGTTTCCAACCTCAAGTGCACGAGCTCCACCAGCGACTCCACCGTCATCTGTCGGAACCTCGCCGAGTGAAACTCAATGCTAGCCACCTTCCTCTGTCGTTGCCACGTCTCGTCGTCAGCCCCGAATATTCCATCACCGAGAAGGTCTCTCACCGTGTCGCGGAAGAATGGCCCTTTAGGGTAGGAGGGAAATTTGGTCTTGAGAAGGTGCTCCAAGTTTCGGGGATCAGCAGTGACTACACAATTGAGACTACTAAACCACGGTCCTCGAAATTGAAATGTACCCTTATGACGGCGGAGGAGGTCAGTAATCCATTCGTAGAGATTCCCACGTGCTGCTGTGATCAGAGACGGCAAGCCATATCGTCGTCGTTGTCTAACGACATGGATGGCGAAGAACACGAAAAGAGCGAAAGAGATCTCCAAGATTTGGACATCGAGGAGCGGCCAGAGCCCGAACTTTCCATCGGAAACCAAAGCGGGCAGGGCGGAGGAGGAGGAGGAGGAGGAGAGGTTGCCGGAATCCATCATAGGTTTGTGATGAAGGAATGGAATTGCATGGGAAAACATGGAGGAAGCTTTGTTGGTAAAATG

Coding sequence (CDS)

GGCAAGCTTCGGCTCCACCGGATGCCCCTTCACCACCGCCACCCGGTACCGGCTGATGATCGAGGCGGCGACGTATTTCATTTGATAGTACGCGAAATCCCTTCCCAGACACAGCCGAGGACCGCCGTTGAAGGCGAATCGTTCCGTCTGGGAATACATCGTCCTCCACGACCTGAATCGGACGGAATTTTGTCCTCCACGTCGGGATTTCGATCGAGCAACCAGAAGAACCAACTCAATGCGACGGAAGACGTGTCTCTTCCGGCGAGTATGAAATTGACGCAAATATCTCTGAGAAACTTGTCGGAGAATGACCGCCCTTGCTCGTCTCTTAGCCTCATAAATACGGTCGGATCTTTGGTTATCGGCTTGTGGTTGCGCCGTCGTGGAGAGTTCTCTCTTCCGTGTTTGAATCACGTTCTCTGCAAATTCGTCGACGGCTTGTATCGATTGCTTCAGCCTCTTCTCCACTCCCAAGTTCAGAACAGTGACTTCAGTCGCATCCTCAAAGGCCTTAGCAAATGGAATCTCCGGCAAGCCGCCGCTCAAGCAGCCGGGATCCACCCCAAAGGCAATCATACACACATTGTCAAACGTCAATCTCAGAAGAACATCCTGCAAGTCCACTGCCGTCCTCCGTCCCACGAAATCCTCCAACACTGTTTCCAACCTCAAGTGCACGAGCTCCACCAGCGACTCCACCGTCATCTGTCGGAACCTCGCCGAGTGAAACTCAATGCTAGCCACCTTCCTCTGTCGTTGCCACGTCTCGTCGTCAGCCCCGAATATTCCATCACCGAGAAGGTCTCTCACCGTGTCGCGGAAGAATGGCCCTTTAGGGTAGGAGGGAAATTTGGTCTTGAGAAGGTGCTCCAAGTTTCGGGGATCAGCAGTGACTACACAATTGAGACTACTAAACCACGGTCCTCGAAATTGAAATGTACCCTTATGACGGCGGAGGAGGTCAGTAATCCATTCGTAGAGATTCCCACGTGCTGCTGTGATCAGAGACGGCAAGCCATATCGTCGTCGTTGTCTAACGACATGGATGGCGAAGAACACGAAAAGAGCGAAAGAGATCTCCAAGATTTGGACATCGAGGAGCGGCCAGAGCCCGAACTTTCCATCGGAAACCAAAGCGGGCAGGGCGGAGGAGGAGGAGGAGGAGGAGAGGTTGCCGGAATCCATCATAGGTTTGTGATGAAGGAATGGAATTGCATGGGAAAACATGGAGGAAGCTTTGTTGGTAAAATG

Protein sequence

GKLRLHRMPLHHRHPVPADDRGGDVFHLIVREIPSQTQPRTAVEGESFRLGIHRPPRPESDGILSSTSGFRSSNQKNQLNATEDVSLPASMKLTQISLRNLSENDRPCSSLSLINTVGSLVIGLWLRRRGEFSLPCLNHVLCKFVDGLYRLLQPLLHSQVQNSDFSRILKGLSKWNLRQAAAQAAGIHPKGNHTHIVKRQSQKNILQVHCRPPSHEILQHCFQPQVHELHQRLHRHLSEPRRVKLNASHLPLSLPRLVVSPEYSITEKVSHRVAEEWPFRVGGKFGLEKVLQVSGISSDYTIETTKPRSSKLKCTLMTAEEVSNPFVEIPTCCCDQRRQAISSSLSNDMDGEEHEKSERDLQDLDIEERPEPELSIGNQSGQGGGGGGGGEVAGIHHRFVMKEWNCMGKHGGSFVGKM
Homology
[Close]
BLAST of Cp4.1LG12g06610 vs. TrEMBL
Match: B8A035_MAIZE (Uncharacterized protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.1e-15
Identity = 54/181 (29.83%), Postives = 96/181 (53.04%), Query Frame = 1 

Query: 159 QVQNSDFSRILKGLSKWNLRQAAAQAAGIHPKGNHTHIVKRQSQKNILQVHCRPPSHEIL 218
           + +      +L+   + +L +A A+AA +H + +H H+V+ ++++++L+V          
Sbjct: 373 EAEGGGLGGVLERAGERDLGEARAEAARVHAERDHAHVVEGEAEEHVLEVDGGAGGLRAG 432

Query: 219 QHCFQPQVHELHQRLHRHLSEPRRVKLNASHLPLSLPRLVVSPEYSITEKVSHRVAEEWP 278
           QH  Q  VH+LH+R  R  +E  RV+L A    L  PRLVV  E ++ ++V HRVAE   
Sbjct: 433 QHGQQAAVHQLHERAGRERAELGRVELEAGRPALPPPRLVVGAEDAVAQEVPHRVAEVGA 492

Query: 279 FRVGGKFGLEKVLQVSGISSDYTIETTKPRSSKLKCTLMTAEEVSNPFVEIPTCCCDQRR 338
                + GLE+VLQV+ +   + +E  +PR  + +      +   +P V +     +QRR
Sbjct: 493 LGEAAEPGLEEVLQVARVGRHHALEVGEPRPPERERAAARLQHARDPLVHVAADAEEQRR 552

Query: 339 Q 340
           +
Sbjct: 553 E 553

[Close]
BLAST of Cp4.1LG12g06610 vs. NCBI nr
Match: gi|219886319|gb|ACL53534.1| (unknown [Zea mays])

HSP 1 Score: 92.8 bits (229), Expect = 1.5e-15
Identity = 54/181 (29.83%), Postives = 96/181 (53.04%), Query Frame = 1 

Query: 159 QVQNSDFSRILKGLSKWNLRQAAAQAAGIHPKGNHTHIVKRQSQKNILQVHCRPPSHEIL 218
           + +      +L+   + +L +A A+AA +H + +H H+V+ ++++++L+V          
Sbjct: 373 EAEGGGLGGVLERAGERDLGEARAEAARVHAERDHAHVVEGEAEEHVLEVDGGAGGLRAG 432

Query: 219 QHCFQPQVHELHQRLHRHLSEPRRVKLNASHLPLSLPRLVVSPEYSITEKVSHRVAEEWP 278
           QH  Q  VH+LH+R  R  +E  RV+L A    L  PRLVV  E ++ ++V HRVAE   
Sbjct: 433 QHGQQAAVHQLHERAGRERAELGRVELEAGRPALPPPRLVVGAEDAVAQEVPHRVAEVGA 492

Query: 279 FRVGGKFGLEKVLQVSGISSDYTIETTKPRSSKLKCTLMTAEEVSNPFVEIPTCCCDQRR 338
                + GLE+VLQV+ +   + +E  +PR  + +      +   +P V +     +QRR
Sbjct: 493 LGEAAEPGLEEVLQVARVGRHHALEVGEPRPPERERAAARLQHARDPLVHVAADAEEQRR 552

Query: 339 Q 340
           +
Sbjct: 553 E 553

The following BLAST results are available for this feature:
BLAST of Cp4.1LG12g06610 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG12g06610 vs. TrEMBL
Match NameE-valueIdentityDescription
B8A035_MAIZE1.1e-1529.83Uncharacterized protein OS=Zea mays PE=2 SV=1[more]
BLAST of Cp4.1LG12g06610 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG12g06610 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|219886319|gb|ACL53534.1|1.5e-1529.83unknown [Zea mays][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG12g06610.1Cp4.1LG12g06610.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG12g06610CmoCh17G009560Cucurbita moschata (Rifu)cmocpeB335
Cp4.1LG12g06610Carg07077Silver-seed gourdcarcpeB0158
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG12g06610Cucumber (Chinese Long) v3cpecucB0158
Cp4.1LG12g06610Cucumber (Chinese Long) v3cpecucB0188
Cp4.1LG12g06610Wax gourdcpewgoB0171
Cp4.1LG12g06610Wax gourdcpewgoB0201
Cp4.1LG12g06610Cucurbita pepo (Zucchini)cpecpeB157
Cp4.1LG12g06610Cucurbita pepo (Zucchini)cpecpeB181
Cp4.1LG12g06610Cucurbita pepo (Zucchini)cpecpeB185
Cp4.1LG12g06610Cucumber (Gy14) v1cgycpeB0334
Cp4.1LG12g06610Cucurbita maxima (Rimu)cmacpeB260
Cp4.1LG12g06610Cucurbita maxima (Rimu)cmacpeB371
Cp4.1LG12g06610Cucurbita maxima (Rimu)cmacpeB465
Cp4.1LG12g06610Cucurbita maxima (Rimu)cmacpeB902
Cp4.1LG12g06610Cucurbita moschata (Rifu)cmocpeB224
Cp4.1LG12g06610Cucurbita moschata (Rifu)cmocpeB425
Cp4.1LG12g06610Cucurbita moschata (Rifu)cmocpeB839
Cp4.1LG12g06610Wild cucumber (PI 183967)cpecpiB138
Cp4.1LG12g06610Wild cucumber (PI 183967)cpecpiB163
Cp4.1LG12g06610Cucumber (Chinese Long) v2cpecuB137
Cp4.1LG12g06610Cucumber (Chinese Long) v2cpecuB161
Cp4.1LG12g06610Bottle gourd (USVL1VR-Ls)cpelsiB113
Cp4.1LG12g06610Bottle gourd (USVL1VR-Ls)cpelsiB116
Cp4.1LG12g06610Watermelon (Charleston Gray)cpewcgB126
Cp4.1LG12g06610Watermelon (Charleston Gray)cpewcgB134
Cp4.1LG12g06610Watermelon (97103) v1cpewmB131
Cp4.1LG12g06610Watermelon (97103) v1cpewmB141
Cp4.1LG12g06610Melon (DHL92) v3.5.1cpemeB123
Cp4.1LG12g06610Melon (DHL92) v3.5.1cpemeB133
Cp4.1LG12g06610Cucumber (Gy14) v2cgybcpeB308
Cp4.1LG12g06610Cucumber (Gy14) v2cgybcpeB906
Cp4.1LG12g06610Melon (DHL92) v3.6.1cpemedB150
Cp4.1LG12g06610Melon (DHL92) v3.6.1cpemedB160
Cp4.1LG12g06610Silver-seed gourdcarcpeB0631
Cp4.1LG12g06610Silver-seed gourdcarcpeB1070