Carg07077 (gene) Silver-seed gourd

Overview
NameCarg07077
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_017 : 19301 .. 20831 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCCCTTCACCACCGCCACCCGGTACCGGCTGATGATCGAGGCGGCGACGTATTTCATTTGATAGTACGCGAAATCCCTTCCCAGACACAGCCGAGGACCGCCGTTGAAGGCGGTGAATCGATACGCTGATTCGCTCATGAACCGACCGTCTTTCATCCATCTCTCAGGTTTGAATTCGCGACAATCTTTCCCCCAAATCGCTTCCATTCTTCCCATCGCGTATATAGCGTAGATGATTTTTGTTCCTTTCTTCAGAATCGTTCCGTCTGGGAATACATCGTCCTCCACGACCTGAATCGGACAGGTAATTGATTAGGTTTCTGAAATCTTTCGAAATAGGAATGTGTATGAGTGATTAATTACCTCTTTGTGATCGACTGGAACTGATGGATATAATCTTAGGGCTTCGGAAATCGCCGCGTGCAAATACTCCATTTTCTTGATTTCCTCTGGTTTGAACACTAACGAATCAAATCGGAACTCTCTGGTTTTGGCCTCTTCTCGTTCGCCGACGATTCTGTAAATTTCTGCTAGAATTTTGTCCTCCACGTCGGGATTTCGATCGAGCAACCAGAAGAACCAACTCAATGCGACGGAAGACGTGTCTCTTCCGGCGAGTATGAAATTGACGCAAATATCTCTGAGAAACTTGTCGGAGAATGGCCGCCCTTGCTCGTCTCTTAGCCTCATAAATACGGTTAATAGGTCGGATCTTTGGTTCTCGGCTTGCGGTTGCGCCGTCGTGGAGAGTTCTCTCTTCCGTGTTTGAATCACGTCCTCTGCAAATTCGTCGACGGCTTGTATCGATTGCTTCAGCTTCTTCTCCACTCCCAAGTTCAGGTACCTGCTTAATGGTAAATTAATTAAGCAATTAGTTGTTAATTACTTCTAATTATAGAGTTTTTTCTTAACAGATTGTCTGAAACATGATTTGATTACACTATTGTAAATACCTCAAGATTTTCCATACGAACGTAGGTGTGATGAAGCGTAGAACAGTGACTTCAGTCGCATCCTCAAAGGCCTTAGCAAATGGAATCTCCGGCAAGCCGCCGCGCAAGCAGCCGGGATCCACCCCAAAGGCAATCATACACACATTGTCAAACGTCAATCTCAGAAGAACATCCTGCAGGTCCACCGCCGTCCTCCGTCCCACGAAATCCTCCAACACTGTTTCCAACCTCGAGTGCACGAGCTCCACCAGCGACTCCACCGTCATCTGTCGGAACCTCGCCGAGTGAAACTCAATGCTGGCCACCTTCCTCTGTCGTTGCCACGTCTCATCGTCAGCCCCGAATATTCCATCACCGAGAAGGTCTCTCACTGTGTCGCGGAAGAATGGCCCTTTAGGGTAGGAAGGAAATTTGGTCTTGAGAAGGTGCTCCAAGTTTCGGGGATCAGCAGTGACTACACAATTGAGACTACTAAACCATGGGCCTCGAAATTGAAACGTACCCTTATGACGACGGAGGAGGTCAGTAATCCATTCGTAGAGATTCCCACGTGCTGCTGTGATCAGAGACGGTAA

mRNA sequence

ATGCCCCTTCACCACCGCCACCCGGTACCGGCTGATGATCGAGGCGGCGACGTATTTCATTTGATAGTACGCGAAATCCCTTCCCAGACACAGCCGAGGACCGCCGTTGAAGGCGAATCGTTCCGTCTGGGAATACATCGTCCTCCACGACCTGAATCGGACAGAATTTTGTCCTCCACGTCGGGATTTCGATCGAGCAACCAGAAGAACCAACTCAATGCGACGGAAGACGTGTCTCTTCCGGCGAGTATGAAATTGACGCAAATATCTCTGAGAAACTTGTCGGAGAATGGCCGCCCTTGCTCGTCTCTTAGCCTCATAAATACGGTCGGATCTTTGGTTCTCGGCTTGCGGTTGCGCCGTCGTGGAGAGTTCTCTCTTCCGTGTTTGAATCACGTCCTCTGCAAATTCGTCGACGGCTTGTATCGATTGCTTCAGCTTCTTCTCCACTCCCAAGTTCAGAACAGTGACTTCAGTCGCATCCTCAAAGGCCTTAGCAAATGGAATCTCCGGCAAGCCGCCGCGCAAGCAGCCGGGATCCACCCCAAAGGCAATCATACACACATTGTCAAACGTCAATCTCAGAAGAACATCCTGCAGGTCCACCGCCGTCCTCCGTCCCACGAAATCCTCCAACACTGTTTCCAACCTCGAGTGCACGAGCTCCACCAGCGACTCCACCGTCATCTGTCGGAACCTCGCCGAGTGAAACTCAATGCTGGCCACCTTCCTCTGTCGTTGCCACGTCTCATCGTCAGCCCCGAATATTCCATCACCGAGAAGGTCTCTCACTGTGTCGCGGAAGAATGGCCCTTTAGGGTAGGAAGGAAATTTGGTCTTGAGAAGGTGCTCCAAGTTTCGGGGATCAGCAGTGACTACACAATTGAGACTACTAAACCATGGGCCTCGAAATTGAAACGTACCCTTATGACGACGGAGGAGGTCAGTAATCCATTCGTAGAGATTCCCACGTGCTGCTGTGATCAGAGACGGTAA

Coding sequence (CDS)

ATGCCCCTTCACCACCGCCACCCGGTACCGGCTGATGATCGAGGCGGCGACGTATTTCATTTGATAGTACGCGAAATCCCTTCCCAGACACAGCCGAGGACCGCCGTTGAAGGCGAATCGTTCCGTCTGGGAATACATCGTCCTCCACGACCTGAATCGGACAGAATTTTGTCCTCCACGTCGGGATTTCGATCGAGCAACCAGAAGAACCAACTCAATGCGACGGAAGACGTGTCTCTTCCGGCGAGTATGAAATTGACGCAAATATCTCTGAGAAACTTGTCGGAGAATGGCCGCCCTTGCTCGTCTCTTAGCCTCATAAATACGGTCGGATCTTTGGTTCTCGGCTTGCGGTTGCGCCGTCGTGGAGAGTTCTCTCTTCCGTGTTTGAATCACGTCCTCTGCAAATTCGTCGACGGCTTGTATCGATTGCTTCAGCTTCTTCTCCACTCCCAAGTTCAGAACAGTGACTTCAGTCGCATCCTCAAAGGCCTTAGCAAATGGAATCTCCGGCAAGCCGCCGCGCAAGCAGCCGGGATCCACCCCAAAGGCAATCATACACACATTGTCAAACGTCAATCTCAGAAGAACATCCTGCAGGTCCACCGCCGTCCTCCGTCCCACGAAATCCTCCAACACTGTTTCCAACCTCGAGTGCACGAGCTCCACCAGCGACTCCACCGTCATCTGTCGGAACCTCGCCGAGTGAAACTCAATGCTGGCCACCTTCCTCTGTCGTTGCCACGTCTCATCGTCAGCCCCGAATATTCCATCACCGAGAAGGTCTCTCACTGTGTCGCGGAAGAATGGCCCTTTAGGGTAGGAAGGAAATTTGGTCTTGAGAAGGTGCTCCAAGTTTCGGGGATCAGCAGTGACTACACAATTGAGACTACTAAACCATGGGCCTCGAAATTGAAACGTACCCTTATGACGACGGAGGAGGTCAGTAATCCATTCGTAGAGATTCCCACGTGCTGCTGTGATCAGAGACGGTAA

Protein sequence

MPLHHRHPVPADDRGGDVFHLIVREIPSQTQPRTAVEGESFRLGIHRPPRPESDRILSSTSGFRSSNQKNQLNATEDVSLPASMKLTQISLRNLSENGRPCSSLSLINTVGSLVLGLRLRRRGEFSLPCLNHVLCKFVDGLYRLLQLLLHSQVQNSDFSRILKGLSKWNLRQAAAQAAGIHPKGNHTHIVKRQSQKNILQVHRRPPSHEILQHCFQPRVHELHQRLHRHLSEPRRVKLNAGHLPLSLPRLIVSPEYSITEKVSHCVAEEWPFRVGRKFGLEKVLQVSGISSDYTIETTKPWASKLKRTLMTTEEVSNPFVEIPTCCCDQRR
Homology
[Close]
BLAST of Carg07077 vs. NCBI nr
Match: ACL53534.1 (unknown [Zea mays])

HSP 1 Score: 92.8 bits (229), Expect = 2.3e-15
Identity = 53/180 (29.44%), Postives = 95/180 (52.78%), Query Frame = 0 

Query: 152 QVQNSDFSRILKGLSKWNLRQAAAQAAGIHPKGNHTHIVKRQSQKNILQVHRRPPSHEIL 211
           + +      +L+   + +L +A A+AA +H + +H H+V+ ++++++L+V          
Sbjct: 373 EAEGGGLGGVLERAGERDLGEARAEAARVHAERDHAHVVEGEAEEHVLEVDGGAGGLRAG 432

Query: 212 QHCFQPRVHELHQRLHRHLSEPRRVKLNAGHLPLSLPRLIVSPEYSITEKVSHCVAEEWP 271
           QH  Q  VH+LH+R  R  +E  RV+L AG   L  PRL+V  E ++ ++V H VAE   
Sbjct: 433 QHGQQAAVHQLHERAGRERAELGRVELEAGRPALPPPRLVVGAEDAVAQEVPHRVAEVGA 492

Query: 272 FRVGRKFGLEKVLQVSGISSDYTIETTKPWASKLKRTLMTTEEVSNPFVEIPTCCCDQRR 331
                + GLE+VLQV+ +   + +E  +P   + +R     +   +P V +     +QRR
Sbjct: 493 LGEAAEPGLEEVLQVARVGRHHALEVGEPRPPERERAAARLQHARDPLVHVAADAEEQRR 552

[Close]
BLAST of Carg07077 vs. TrEMBL
Match: tr|B8A035|B8A035_MAIZE (Uncharacterized protein OS=Zea mays OX=4577 PE=2 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.5e-15
Identity = 53/180 (29.44%), Postives = 95/180 (52.78%), Query Frame = 0 

Query: 152 QVQNSDFSRILKGLSKWNLRQAAAQAAGIHPKGNHTHIVKRQSQKNILQVHRRPPSHEIL 211
           + +      +L+   + +L +A A+AA +H + +H H+V+ ++++++L+V          
Sbjct: 373 EAEGGGLGGVLERAGERDLGEARAEAARVHAERDHAHVVEGEAEEHVLEVDGGAGGLRAG 432

Query: 212 QHCFQPRVHELHQRLHRHLSEPRRVKLNAGHLPLSLPRLIVSPEYSITEKVSHCVAEEWP 271
           QH  Q  VH+LH+R  R  +E  RV+L AG   L  PRL+V  E ++ ++V H VAE   
Sbjct: 433 QHGQQAAVHQLHERAGRERAELGRVELEAGRPALPPPRLVVGAEDAVAQEVPHRVAEVGA 492

Query: 272 FRVGRKFGLEKVLQVSGISSDYTIETTKPWASKLKRTLMTTEEVSNPFVEIPTCCCDQRR 331
                + GLE+VLQV+ +   + +E  +P   + +R     +   +P V +     +QRR
Sbjct: 493 LGEAAEPGLEEVLQVARVGRHHALEVGEPRPPERERAAARLQHARDPLVHVAADAEEQRR 552

The following BLAST results are available for this feature:
BLAST of Carg07077 vs. NCBI nr
Match NameE-valueIdentityDescription
ACL53534.12.3e-1529.44unknown [Zea mays][more]
BLAST of Carg07077 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg07077 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg07077 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|B8A035|B8A035_MAIZE1.5e-1529.44Uncharacterized protein OS=Zea mays OX=4577 PE=2 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg07077-RACarg07077-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 54..77
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 29..77