Cp4.1LG12g06280 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG12g06280
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionNitrogen regulatory protein P-II
LocationCp4.1LG12 : 7621879 .. 7625301 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGGGCCTTTGGTGACCATGAAGAGTTGAAGTAAATGGGCTTTTGCTTTTTAGAAAATGGACAAAAACACAAAAAATTCCCCAACGTGAACTACGAGGCTTCCGATCAGCTCGACACTCTGCTCCGTCTCTGATTCTGGCATACAACTTTCCATGGCGGCAACCGCGACGAACCCCACCGCTCTTCTCCTTCCTTTCCATTCTCCTCTTCCAAAACTTCCTCACTTCGCTTCTTCTTCCATCACTCCAAACTTCGCCGTCAGATTCTCTCAGTTCAACCTCGCCTACAAGCCTTCCAATCGCCGAATCCTTCCTCTAGTCAAGGCCCAAGCCTCTCTCGGTATCCATCACTCGCCTCGCATTTTATATATTGTGCTCACAAACGGATTTTGGATCTTCAGCTTCTCAATTTTTAATATGCGGTTTTCTTTTCTTTGTAGATTATGTGCCTGATTCCAAATTTTACAAAGTGGAGGCGATCCTCAGGTACGGATAGGCTCCATGGTGTTCTCTATTGCTACATTTGGAGTTTGTGAATGTAGATTTTGTCGTTTTCTTTAGTTTATAATTTGGATTTATCTTTTGAAGACTTTGAGTAATCTTGCTGAGTTTGTTGCATCTGATACGTATTTATCTGTGTGCTATGTTGGTGTATATGGACGAGATAGGCCGTGGAGAATCCAAAATGTTTCATCGGTAAGATCTGGTTAACCTTGAACATTGTCATTCGTAATTTCCATTTGGAATATGCAAAATCTCGTTTGGTTTTATTGTTAAATATGAAATAGTTGTGTAATGCACTGAACGGATGGTCGATATGGTAAAATTAGGGCACCTGAGACTACGGGGGAACAGAATTATGTAAACTTTGAATTTTTTGGCATCATAGGAAGCGTAGTTTAGGATCATAATATTGAGGCTATCGAGGGAGGGAAAACTACCAGTTGATATCATACTTGCATTTCTAATTGGTTGCATACTACCAATTGTGTAATGCAATGAACGGTTGGTGCTCGTCCAGAATGCTAACATTAGCGACTCATGTCATGTTAAGAACTTCTTAACCTTTAACCTATCTTACCTGACAAAGATGTATACATTTTATGTGCTTTAATGATAGCCAAAGAATGGAGATTATGCAGATTTTTGTTGTTTAAATATCCTATTTTGCAAAGCATTTGCATTAAGTTGTTCTATTGTTTCTTTGGGAGAAAAACAAAGGCATTGCTGAAAATGGGTATTCGAGGTGTCACGGTATCTGAAGTGAAGGGCTTTGGTTCTCAAGGTGGATCCACAGAGAGGCATGGTGGTAAGTTTTTCTTTCGTGATTCTCTCTGTCTTGGTGCATGGTGAGGGGAATCTATTTGTACATGTGAGTCTGTTTCTAGATTCTCATGTCATTTCCCATTGGTCATTCCTGATGTTTGCTTATGATTCCAAATAACTTTATTCTCTTTCATTTACTGTTTAGGGTCTGAATTCTCTGAAGACAACTTTGTTGCTAAAGTTAAGATGGAAATTGTGGTCGTTAAAGAACAGGTTAAATAATTTTTGCACATATATATTGTGCAAACTACTGCATTAGAATCCATGGGTATTATGATTAAATTTAAGTATCCTTTTATCAGGTTGAAGCTGTCATAGACAAGATAATTGAGGAGGCAAGAACTGGCGAAATTGGTGATGGCAAAATTTTTGGTAAAACATAACTTTATTTTTGTTAATGCCTCAGCTCCTTATCTGCTTATGTCGTAATTGTTTGCTTAATTTCTATTCTCTGAATCTACTGTCCTGTTTGTTGAGCTGTTCATTTGTGTTGTCTTTTAATTTCACTTGTTTGATTTCATGCATTGCCATTAACACTAGTTTCCTATGTTCACTAGATTAGCACCTTATGTGTTAATTATTAGTAACAAACTAAAAAATAAGTTTTCGCGATGCAATGTGAGATAAATTGTTCTGTTTTATAAGTTTATGATAAGGAATCTCTACAAGGGACGGAAAGTAAGATTCAAATTACTTTGTTGATCGAATATCTCAAGGCAAGAACACTTGTTTGAGATTCGAATTACTCCACAAGCAAGATCGATCATGTCTAGCTTGAATGATTCTAAACATGCAATCTAAACTACTATAGAATTGCAAAGAAACTTAGCCGTTGACTAAATGAAAAGGTAAGAACACTTAGCCCTAATGATAAGGAATCACTCCAAGGGAAAGTAAATTTCAGATTACCTTATTGATCGAATATCTCAAGACAAGAACACTTGTTTGATATTCGAAACACTCCACAAGCAAGATCGATCATGTCTAACTTTCTAAACATGCAATCTAAATTACATAGAATTGTAAAAAAACTTGGTCCTTGGCCAAAAGAAATCACAAATGTTTTTTTTACTACATTTTTCAAGTCTCTTTACAAAGATAACGTGACTTTATATAGCTTCAAAATAAAAACACTTAACCTTTCCTGAGACATTTCTAGAGTTGTAACTTTCATACTTTATATGACCATAATGAAACACTATGTAAATTTTATTCAAGTAAATAAAAGCCTTAAACACAATAACTCGATTATCATCCACCCAAAATTGTAACCATCTAACTAGAGTTTACTAGAGTTGATTTTAAGATGAAGCACATCGACTTTACTAGAGTTCATCATTTAAGTTATCATGCCCTATGCTTGCAATCTGGAGCACGTATCTAAATGCACACATGGAAGAAAAACGAATCTCGGAATTAATTTTTCTTTATTTAATGAACCCTTTTAGACTCCTATCGAACTTCTGACACATTTTTCATCTCCACACAGTGATACCAATCTCAGACGTGATAAGAGTTCGTACAGGTACTTGTTAGCTTTGGCCAACTATCAAAATTTCAAGTTGCCTCTATGAAACTTGAAAAACATTAAGATTATTTCGTATCACATTGGTATATATCTTATATGATGCCTAATTCACAGGCGAACGTGGAGAAAGAGCGGAGAGGATGACTGGAGGGCGATCCGACATGGCTGTTGATCGAGTATGACAATAAGGAGAAAATCCTAGCAGATAATATGTTTTGGAGTTTGAATCATGTTTCCATGGTCTTGCCGATGCCTTCCTCAGTCCTGTGGAGAGGAGAAATAAAATAAATTGTAAGTTATAAGTTATAAGTCAGGTAAGTCGCTGCCTCTTGTAGTCATAAAAATGAACCATATTCGGCAATAATCAATGCCTAAGTTACTGCACCATTTCCTAATGTACCACTGATTTTATGTTAAACGCTACTACTCAATACTTTTGTAACTCGATAATTTTGTAACAGCCCTCACAGTCCACCTCCCTTCGGAGCTCAGCGTCCTCGCTGACACACTCGTTTCTTTCCCAGTCTACGTGGGATTTCACAACTTTTGTTTTAAATTTTCCATATGCGGG

mRNA sequence

TGGGCCTTTGGTGACCATGAAGAGTTGAAGTAAATGGGCTTTTGCTTTTTAGAAAATGGACAAAAACACAAAAAATTCCCCAACGTGAACTACGAGGCTTCCGATCAGCTCGACACTCTGCTCCGTCTCTGATTCTGGCATACAACTTTCCATGGCGGCAACCGCGACGAACCCCACCGCTCTTCTCCTTCCTTTCCATTCTCCTCTTCCAAAACTTCCTCACTTCGCTTCTTCTTCCATCACTCCAAACTTCGCCGTCAGATTCTCTCAGTTCAACCTCGCCTACAAGCCTTCCAATCGCCGAATCCTTCCTCTAGTCAAGGCCCAAGCCTCTCTCGATTATGTGCCTGATTCCAAATTTTACAAAGTGGAGGCGATCCTCAGGCCGTGGAGAATCCAAAATGTTTCATCGGCATTGCTGAAAATGGGTATTCGAGGTGTCACGGTATCTGAAGTGAAGGGCTTTGGTTCTCAAGGTGGATCCACAGAGAGGCATGGTGGGTCTGAATTCTCTGAAGACAACTTTGTTGCTAAAGTTAAGATGGAAATTGTGGTCGTTAAAGAACAGGTTGAAGCTGTCATAGACAAGATAATTGAGGAGGCAAGAACTGGCGAAATTGGTGATGGCAAAATTTTTGTGATACCAATCTCAGACGTGATAAGAGTTCGTACAGGCGAACGTGGAGAAAGAGCGGAGAGGATGACTGGAGGGCGATCCGACATGGCTGTTGATCGAGTATGACAATAAGGAGAAAATCCTAGCAGATAATATGTTTTGGAGTTTGAATCATGTTTCCATGGTCTTGCCGATGCCTTCCTCAGTCCTGTGGAGAGGAGAAATAAAATAAATTGTAAGTTATAAGTTATAAGTCAGGTAAGTCGCTGCCTCTTGTAGTCATAAAAATGAACCATATTCGGCAATAATCAATGCCTAAGTTACTGCACCATTTCCTAATGTACCACTGATTTTATGTTAAACGCTACTACTCAATACTTTTGTAACTCGATAATTTTGTAACAGCCCTCACAGTCCACCTCCCTTCGGAGCTCAGCGTCCTCGCTGACACACTCGTTTCTTTCCCAGTCTACGTGGGATTTCACAACTTTTGTTTTAAATTTTCCATATGCGGG

Coding sequence (CDS)

ATGGCGGCAACCGCGACGAACCCCACCGCTCTTCTCCTTCCTTTCCATTCTCCTCTTCCAAAACTTCCTCACTTCGCTTCTTCTTCCATCACTCCAAACTTCGCCGTCAGATTCTCTCAGTTCAACCTCGCCTACAAGCCTTCCAATCGCCGAATCCTTCCTCTAGTCAAGGCCCAAGCCTCTCTCGATTATGTGCCTGATTCCAAATTTTACAAAGTGGAGGCGATCCTCAGGCCGTGGAGAATCCAAAATGTTTCATCGGCATTGCTGAAAATGGGTATTCGAGGTGTCACGGTATCTGAAGTGAAGGGCTTTGGTTCTCAAGGTGGATCCACAGAGAGGCATGGTGGGTCTGAATTCTCTGAAGACAACTTTGTTGCTAAAGTTAAGATGGAAATTGTGGTCGTTAAAGAACAGGTTGAAGCTGTCATAGACAAGATAATTGAGGAGGCAAGAACTGGCGAAATTGGTGATGGCAAAATTTTTGTGATACCAATCTCAGACGTGATAAGAGTTCGTACAGGCGAACGTGGAGAAAGAGCGGAGAGGATGACTGGAGGGCGATCCGACATGGCTGTTGATCGAGTATGA

Protein sequence

MAATATNPTALLLPFHSPLPKLPHFASSSITPNFAVRFSQFNLAYKPSNRRILPLVKAQASLDYVPDSKFYKVEAILRPWRIQNVSSALLKMGIRGVTVSEVKGFGSQGGSTERHGGSEFSEDNFVAKVKMEIVVVKEQVEAVIDKIIEEARTGEIGDGKIFVIPISDVIRVRTGERGERAERMTGGRSDMAVDRV
Homology
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BLAST of Cp4.1LG12g06280 vs. Swiss-Prot
Match: GLNB_ARATH (Nitrogen regulatory protein P-II homolog OS=Arabidopsis thaliana GN=GLB1 PE=1 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 6.1e-60
Identity = 131/190 (68.95%), Postives = 152/190 (80.00%), Query Frame = 1 

Query: 1   MAATATNPTALL-LPFHSPLPKLPHFASSSITPNFA-VRFSQFNLAYK-PSNR-RILPLV 60
           MAA+ T P ++  L F+S    +      SI   F   R S  +L  K PSN  R+LP+V
Sbjct: 1   MAASMTKPISITSLGFYSDRKNIAFSDCISICSGFRHSRPSCLDLVTKSPSNNSRVLPVV 60

Query: 61  KAQASLDYVPDSKFYKVEAILRPWRIQNVSSALLKMGIRGVTVSEVKGFGSQGGSTERHG 120
            AQ S DY+PDSKFYKVEAI+RPWRIQ VSSALLK+GIRGVTVS+V+GFG+QGGSTERHG
Sbjct: 61  SAQISSDYIPDSKFYKVEAIVRPWRIQQVSSALLKIGIRGVTVSDVRGFGAQGGSTERHG 120

Query: 121 GSEFSEDNFVAKVKMEIVVVKEQVEAVIDKIIEEARTGEIGDGKIFVIPISDVIRVRTGE 180
           GSEFSED FVAKVKMEIVV K+QVE+VI+ IIE ARTGEIGDGKIFV+P+SDVIRVRTGE
Sbjct: 121 GSEFSEDKFVAKVKMEIVVKKDQVESVINTIIEGARTGEIGDGKIFVLPVSDVIRVRTGE 180

Query: 181 RGERAERMTG 187
           RGE+AE+MTG
Sbjct: 181 RGEKAEKMTG 190

[Close]
BLAST of Cp4.1LG12g06280 vs. Swiss-Prot
Match: GLNB_ORYSJ (Nitrogen regulatory protein P-II homolog OS=Oryza sativa subsp. japonica GN=GLB PE=2 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 2.1e-52
Identity = 117/197 (59.39%), Postives = 141/197 (71.57%), Query Frame = 1 

Query: 2   AATATNPTALLLPFHSPLPKLPHFASSSITPNFAV----RFSQFNLAYKPSNRRILPLVK 61
           AA A     +L   H P    P   +++ T    +    R  Q  L    +  R LP   
Sbjct: 7   AAAAAASCGVLRHHHPPASPRPPPTTTTTTSRLLLASRSRGLQRPLRVNHAPPRRLPPTA 66

Query: 62  AQA----SLDYVPDSKFYKVEAILRPWRIQNVSSALLKMGIRGVTVSEVKGFGSQGGSTE 121
           A+A    +  Y P+S+FYKVEAILRPWR+  VSS LL+MGIRGVTVS+V+GFG+QGGSTE
Sbjct: 67  ARAQSAAAAGYQPESEFYKVEAILRPWRVPYVSSGLLQMGIRGVTVSDVRGFGAQGGSTE 126

Query: 122 RHGGSEFSEDNFVAKVKMEIVVVKEQVEAVIDKIIEEARTGEIGDGKIFVIPISDVIRVR 181
           RH GSEF+ED F+ KVKMEIVV K+QVEAV+DKIIE+ARTGEIGDGKIF+IP+SDVIR+R
Sbjct: 127 RHEGSEFAEDTFIDKVKMEIVVSKDQVEAVVDKIIEKARTGEIGDGKIFLIPVSDVIRIR 186

Query: 182 TGERGERAERMTGGRSD 191
           TGERGERAERM GG +D
Sbjct: 187 TGERGERAERMAGGLAD 203

[Close]
BLAST of Cp4.1LG12g06280 vs. Swiss-Prot
Match: GLNB_AQUAE (Nitrogen regulatory protein P-II OS=Aquifex aeolicus (strain VF5) GN=glnB PE=1 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 8.0e-28
Identity = 61/110 (55.45%), Postives = 88/110 (80.00%), Query Frame = 1 

Query: 72  KVEAILRPWRIQNVSSALLKMGIRGVTVSEVKGFGSQGGSTERHGGSEFSEDNFVAKVKM 131
           K+EAI++P+++  V  AL+++GI G+TV+EVKGFG Q G TE + G+E+  D F+ KVK+
Sbjct: 3   KIEAIIKPFKLDEVKDALVEIGIGGMTVTEVKGFGQQKGHTEIYRGTEYVID-FLPKVKI 62

Query: 132 EIVVVKEQVEAVIDKIIEEARTGEIGDGKIFVIPISDVIRVRTGERGERA 182
           E+VV  E VE V++ I++ A+TG +GDGKIF+IP+ DVIR+RTGERGE+A
Sbjct: 63  EVVVRDEDVEKVVETIVKTAQTGRVGDGKIFIIPVEDVIRIRTGERGEQA 111

[Close]
BLAST of Cp4.1LG12g06280 vs. Swiss-Prot
Match: GLNB_MICDP (Nitrogen regulatory protein P-II OS=Microchaete diplosiphon GN=glnB PE=3 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 3.1e-27
Identity = 63/110 (57.27%), Postives = 84/110 (76.36%), Query Frame = 1 

Query: 72  KVEAILRPWRIQNVSSALLKMGIRGVTVSEVKGFGSQGGSTERHGGSEFSEDNFVAKVKM 131
           KVEAI+RP+++  V  AL+  GI G+TVSEV+GFG Q G TER+ GSE++ + F+ K+K+
Sbjct: 3   KVEAIIRPFKLDEVKIALVNAGIVGMTVSEVRGFGRQKGQTERYRGSEYTVE-FLQKLKV 62

Query: 132 EIVVVKEQVEAVIDKIIEEARTGEIGDGKIFVIPISDVIRVRTGERGERA 182
           EIVV   QV+ V+DKII  ARTGEIGDGKIF+ P+  V+R+RTGE+   A
Sbjct: 63  EIVVEDNQVDMVVDKIIAAARTGEIGDGKIFISPVEQVVRIRTGEKNTEA 111

[Close]
BLAST of Cp4.1LG12g06280 vs. Swiss-Prot
Match: GLNB_NOSP7 (Nitrogen regulatory protein P-II OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=glnB PE=3 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 3.1e-27
Identity = 64/110 (58.18%), Postives = 84/110 (76.36%), Query Frame = 1 

Query: 72  KVEAILRPWRIQNVSSALLKMGIRGVTVSEVKGFGSQGGSTERHGGSEFSEDNFVAKVKM 131
           KVEAI+RP+++  V  AL+  GI G+TVSEV+GFG Q G TER+ GSE++ + F+ K+K+
Sbjct: 3   KVEAIIRPFKLDEVKIALVNAGIVGMTVSEVRGFGRQKGQTERYRGSEYTVE-FLQKLKV 62

Query: 132 EIVVVKEQVEAVIDKIIEEARTGEIGDGKIFVIPISDVIRVRTGERGERA 182
           EIVV   QV+ V+DKII  ARTGEIGDGKIF+ P+  VIR+RTGE+   A
Sbjct: 63  EIVVDDNQVDMVVDKIIAAARTGEIGDGKIFISPVEQVIRIRTGEKNTEA 111

[Close]
BLAST of Cp4.1LG12g06280 vs. TrEMBL
Match: A0A0A0K850_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G414410 PE=3 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 2.7e-75
Identity = 164/196 (83.67%), Postives = 171/196 (87.24%), Query Frame = 1 

Query: 1   MAATATNPTALLLPFHSPLPKLPHFASSS-ITPNFA-VRFSQFNLAYK-PSNRRILPLVK 60
           +AAT TN TALLLP     P+  HF S S ITP F  V  S FNLA   PSNR+ILPLVK
Sbjct: 3   VAATTTNLTALLLP----RPQFHHFTSFSFITPYFTTVGLSHFNLANNHPSNRQILPLVK 62

Query: 61  A-QASLDYVPDSKFYKVEAILRPWRIQNVSSALLKMGIRGVTVSEVKGFGSQGGSTERHG 120
           A Q SLDYVPDSKFYKVEAILRPWRIQNVSSALLKMGIRGVTVS+VKGFGSQGGS ERHG
Sbjct: 63  ATQGSLDYVPDSKFYKVEAILRPWRIQNVSSALLKMGIRGVTVSDVKGFGSQGGSKERHG 122

Query: 121 GSEFSEDNFVAKVKMEIVVVKEQVEAVIDKIIEEARTGEIGDGKIFVIPISDVIRVRTGE 180
           GSEFSEDNFV KVKMEIVVVK+QVEAVIDKIIEEARTGEIGDGKIFVIPISDVIR+RTGE
Sbjct: 123 GSEFSEDNFVTKVKMEIVVVKDQVEAVIDKIIEEARTGEIGDGKIFVIPISDVIRIRTGE 182

Query: 181 RGERAERMTGGRSDMA 193
           RGERAERMTGGRSDM+
Sbjct: 183 RGERAERMTGGRSDMS 194

[Close]
BLAST of Cp4.1LG12g06280 vs. TrEMBL
Match: A0A061DRE1_THECC (Nitrogen regulatory protein P-II OS=Theobroma cacao GN=TCM_004888 PE=3 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 4.4e-65
Identity = 135/184 (73.37%), Postives = 157/184 (85.33%), Query Frame = 1 

Query: 12  LLPFHSPLPKLPH-FASSSITPNFA-VRFSQFNLAYK-PSNRRILPLVKAQASLDYVPDS 71
           L P HSP  +  +    SS+ P+F   R S+ N+  K P N  ILP+++AQ+S DY PDS
Sbjct: 10  LSPLHSPSHRNYYPLIYSSVLPSFRDSRLSKLNVTLKHPRNASILPVIRAQSSPDYTPDS 69

Query: 72  KFYKVEAILRPWRIQNVSSALLKMGIRGVTVSEVKGFGSQGGSTERHGGSEFSEDNFVAK 131
           KFYKVEAI+RPWRIQ VSSALLKMGIRGVTVS+V+GFG+QGGSTERHGGSEFSED FV+K
Sbjct: 70  KFYKVEAIIRPWRIQQVSSALLKMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVSK 129

Query: 132 VKMEIVVVKEQVEAVIDKIIEEARTGEIGDGKIFVIPISDVIRVRTGERGERAERMTGGR 191
           VKMEIVV K+QVEAVIDKIIEEARTGEIGDGKIF++P+SDVIRVRTGERGE+AERMTGGR
Sbjct: 130 VKMEIVVSKDQVEAVIDKIIEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKAERMTGGR 189

Query: 192 SDMA 193
           +DM+
Sbjct: 190 ADMS 193

[Close]
BLAST of Cp4.1LG12g06280 vs. TrEMBL
Match: M5XMG7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011791mg PE=3 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 1.7e-64
Identity = 137/194 (70.62%), Postives = 160/194 (82.47%), Query Frame = 1 

Query: 1   MAATATNPTALLLPFHSPLPKLPHFASSSITPNFA-VRFSQFNLAYKPS-NRRILPLVKA 60
           MAA A    +LL P  S L +LP   SSSI       RFS FN+  K + N  +LP+++A
Sbjct: 1   MAAMAK--PSLLNPLRSHLNELPLIDSSSIRTKLREFRFSHFNVTLKHARNASVLPVIRA 60

Query: 61  QASLDYVPDSKFYKVEAILRPWRIQNVSSALLKMGIRGVTVSEVKGFGSQGGSTERHGGS 120
           Q+S DYVPDSKFYKVEAILRPWR+  VSSALLK+GIRGVTVS+V+GFG+QGGSTERHGGS
Sbjct: 61  QSSPDYVPDSKFYKVEAILRPWRVSQVSSALLKIGIRGVTVSDVRGFGAQGGSTERHGGS 120

Query: 121 EFSEDNFVAKVKMEIVVVKEQVEAVIDKIIEEARTGEIGDGKIFVIPISDVIRVRTGERG 180
           EF+EDNFVAKVKMEIVV K+QVEAV+DKIIE A+TGEIGDGKIFV+P+SDVIR+RTGERG
Sbjct: 121 EFTEDNFVAKVKMEIVVSKDQVEAVVDKIIEAAKTGEIGDGKIFVVPVSDVIRIRTGERG 180

Query: 181 ERAERMTGGRSDMA 193
           ERAE+MTGG SD +
Sbjct: 181 ERAEKMTGGWSDQS 192

[Close]
BLAST of Cp4.1LG12g06280 vs. TrEMBL
Match: A0A067JZV0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14074 PE=3 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 1.0e-61
Identity = 133/194 (68.56%), Postives = 156/194 (80.41%), Query Frame = 1 

Query: 1   MAATATNPTALLLPFHSPLPK-LPHFASSSITPNFAVR-FSQFNLAYKP-SNRRILPLVK 60
           MA TA    +LL P H    K  P F S+S+ P      F QFN   K   +  I+P+V+
Sbjct: 1   MATTAK--LSLLTPLHFHFRKEFPPFVSTSVRPKRGDSLFPQFNTTTKHVKDAPIVPVVR 60

Query: 61  AQASLDYVPDSKFYKVEAILRPWRIQNVSSALLKMGIRGVTVSEVKGFGSQGGSTERHGG 120
           AQ+S +Y+PD+KFYKVEAILRPWR+  VSSALLK+GIRGVTVS+V+GFG+QGGSTERHGG
Sbjct: 61  AQSSPEYIPDAKFYKVEAILRPWRVTRVSSALLKIGIRGVTVSDVRGFGAQGGSTERHGG 120

Query: 121 SEFSEDNFVAKVKMEIVVVKEQVEAVIDKIIEEARTGEIGDGKIFVIPISDVIRVRTGER 180
           SEFSED FVAKVKMEIVV K+QVE VI+KIIEE RTGEIGDGKIF++P+SD+IRVRTGER
Sbjct: 121 SEFSEDKFVAKVKMEIVVSKDQVEPVIEKIIEEGRTGEIGDGKIFLVPVSDIIRVRTGER 180

Query: 181 GERAERMTGGRSDM 192
           GE+AERMTGGRSDM
Sbjct: 181 GEKAERMTGGRSDM 192

[Close]
BLAST of Cp4.1LG12g06280 vs. TrEMBL
Match: Q9ZST5_RICCO (PII protein (Fragment) OS=Ricinus communis PE=2 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 8.6e-61
Identity = 132/192 (68.75%), Postives = 152/192 (79.17%), Query Frame = 1 

Query: 5   ATNPTALLLPFHSPLPK--LPHFASSSITPNFA-VRFSQFNLAYKPSNRR-ILPLVKAQA 64
           AT    LL P HS   K   P F  S   P     RFS FN A K      ++P++ AQ+
Sbjct: 3   ATAKLGLLTPLHSNNIKKEFPVFDFSLFCPELRHSRFSHFNTAVKRVRYAPVVPVINAQS 62

Query: 65  SLDYVPDSKFYKVEAILRPWRIQNVSSALLKMGIRGVTVSEVKGFGSQGGSTERHGGSEF 124
           S DY+PD+KFYKVEAILRPWR+  VSSALLK+GIRGVTVS+V+GFG+QGGSTER GGSEF
Sbjct: 63  SPDYIPDAKFYKVEAILRPWRVSQVSSALLKIGIRGVTVSDVRGFGAQGGSTERQGGSEF 122

Query: 125 SEDNFVAKVKMEIVVVKEQVEAVIDKIIEEARTGEIGDGKIFVIPISDVIRVRTGERGER 184
           SED FVAKVKMEIVV K+QVE VI+KIIEEARTGEIGDGKIF++P+SDVIRVRTGERG++
Sbjct: 123 SEDKFVAKVKMEIVVSKDQVEDVIEKIIEEARTGEIGDGKIFLLPVSDVIRVRTGERGDK 182

Query: 185 AERMTGGRSDMA 193
           AERMTGGRSDM+
Sbjct: 183 AERMTGGRSDMS 194

[Close]
BLAST of Cp4.1LG12g06280 vs. TAIR10
Match: AT4G01900.1 (AT4G01900.1 GLNB1 homolog)

HSP 1 Score: 231.9 bits (590), Expect = 3.4e-61
Identity = 131/190 (68.95%), Postives = 152/190 (80.00%), Query Frame = 1 

Query: 1   MAATATNPTALL-LPFHSPLPKLPHFASSSITPNFA-VRFSQFNLAYK-PSNR-RILPLV 60
           MAA+ T P ++  L F+S    +      SI   F   R S  +L  K PSN  R+LP+V
Sbjct: 1   MAASMTKPISITSLGFYSDRKNIAFSDCISICSGFRHSRPSCLDLVTKSPSNNSRVLPVV 60

Query: 61  KAQASLDYVPDSKFYKVEAILRPWRIQNVSSALLKMGIRGVTVSEVKGFGSQGGSTERHG 120
            AQ S DY+PDSKFYKVEAI+RPWRIQ VSSALLK+GIRGVTVS+V+GFG+QGGSTERHG
Sbjct: 61  SAQISSDYIPDSKFYKVEAIVRPWRIQQVSSALLKIGIRGVTVSDVRGFGAQGGSTERHG 120

Query: 121 GSEFSEDNFVAKVKMEIVVVKEQVEAVIDKIIEEARTGEIGDGKIFVIPISDVIRVRTGE 180
           GSEFSED FVAKVKMEIVV K+QVE+VI+ IIE ARTGEIGDGKIFV+P+SDVIRVRTGE
Sbjct: 121 GSEFSEDKFVAKVKMEIVVKKDQVESVINTIIEGARTGEIGDGKIFVLPVSDVIRVRTGE 180

Query: 181 RGERAERMTG 187
           RGE+AE+MTG
Sbjct: 181 RGEKAEKMTG 190

[Close]
BLAST of Cp4.1LG12g06280 vs. NCBI nr
Match: gi|778728337|ref|XP_011659409.1| (PREDICTED: nitrogen regulatory protein P-II homolog [Cucumis sativus])

HSP 1 Score: 289.7 bits (740), Expect = 3.9e-75
Identity = 164/196 (83.67%), Postives = 171/196 (87.24%), Query Frame = 1 

Query: 1   MAATATNPTALLLPFHSPLPKLPHFASSS-ITPNFA-VRFSQFNLAYK-PSNRRILPLVK 60
           +AAT TN TALLLP     P+  HF S S ITP F  V  S FNLA   PSNR+ILPLVK
Sbjct: 3   VAATTTNLTALLLP----RPQFHHFTSFSFITPYFTTVGLSHFNLANNHPSNRQILPLVK 62

Query: 61  A-QASLDYVPDSKFYKVEAILRPWRIQNVSSALLKMGIRGVTVSEVKGFGSQGGSTERHG 120
           A Q SLDYVPDSKFYKVEAILRPWRIQNVSSALLKMGIRGVTVS+VKGFGSQGGS ERHG
Sbjct: 63  ATQGSLDYVPDSKFYKVEAILRPWRIQNVSSALLKMGIRGVTVSDVKGFGSQGGSKERHG 122

Query: 121 GSEFSEDNFVAKVKMEIVVVKEQVEAVIDKIIEEARTGEIGDGKIFVIPISDVIRVRTGE 180
           GSEFSEDNFV KVKMEIVVVK+QVEAVIDKIIEEARTGEIGDGKIFVIPISDVIR+RTGE
Sbjct: 123 GSEFSEDNFVTKVKMEIVVVKDQVEAVIDKIIEEARTGEIGDGKIFVIPISDVIRIRTGE 182

Query: 181 RGERAERMTGGRSDMA 193
           RGERAERMTGGRSDM+
Sbjct: 183 RGERAERMTGGRSDMS 194

[Close]
BLAST of Cp4.1LG12g06280 vs. NCBI nr
Match: gi|659122940|ref|XP_008461402.1| (PREDICTED: nitrogen regulatory protein P-II homolog [Cucumis melo])

HSP 1 Score: 288.5 bits (737), Expect = 8.8e-75
Identity = 164/196 (83.67%), Postives = 171/196 (87.24%), Query Frame = 1 

Query: 1   MAATATNPTALLLPFHSPLPKLPHFASSS-ITPNFA-VRFSQFNLAYK-PSNRRILPLVK 60
           +AAT TN T LLLP   P P+   F S S ITP F  V  S FNLA   PSNR+ILPLVK
Sbjct: 3   VAATTTNLTVLLLP---PRPQFHPFTSFSFITPYFTPVGLSHFNLANNHPSNRQILPLVK 62

Query: 61  A-QASLDYVPDSKFYKVEAILRPWRIQNVSSALLKMGIRGVTVSEVKGFGSQGGSTERHG 120
           A Q SLDYVPDSKFYKVEAILRPWRIQNVSSALLKMGIRGVTVS+VKGFGSQGGS ERHG
Sbjct: 63  ATQGSLDYVPDSKFYKVEAILRPWRIQNVSSALLKMGIRGVTVSDVKGFGSQGGSKERHG 122

Query: 121 GSEFSEDNFVAKVKMEIVVVKEQVEAVIDKIIEEARTGEIGDGKIFVIPISDVIRVRTGE 180
           GSEFSEDNFVAKVKMEIVVVK+QVEAVIDKIIEEARTGEIGDGKIFVIPISDVIR+RTGE
Sbjct: 123 GSEFSEDNFVAKVKMEIVVVKDQVEAVIDKIIEEARTGEIGDGKIFVIPISDVIRIRTGE 182

Query: 181 RGERAERMTGGRSDMA 193
           RGERAERMTGGRSDM+
Sbjct: 183 RGERAERMTGGRSDMS 195

[Close]
BLAST of Cp4.1LG12g06280 vs. NCBI nr
Match: gi|590720023|ref|XP_007051217.1| (Nitrogen regulatory protein P-II [Theobroma cacao])

HSP 1 Score: 255.8 bits (652), Expect = 6.3e-65
Identity = 135/184 (73.37%), Postives = 157/184 (85.33%), Query Frame = 1 

Query: 12  LLPFHSPLPKLPH-FASSSITPNFA-VRFSQFNLAYK-PSNRRILPLVKAQASLDYVPDS 71
           L P HSP  +  +    SS+ P+F   R S+ N+  K P N  ILP+++AQ+S DY PDS
Sbjct: 10  LSPLHSPSHRNYYPLIYSSVLPSFRDSRLSKLNVTLKHPRNASILPVIRAQSSPDYTPDS 69

Query: 72  KFYKVEAILRPWRIQNVSSALLKMGIRGVTVSEVKGFGSQGGSTERHGGSEFSEDNFVAK 131
           KFYKVEAI+RPWRIQ VSSALLKMGIRGVTVS+V+GFG+QGGSTERHGGSEFSED FV+K
Sbjct: 70  KFYKVEAIIRPWRIQQVSSALLKMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVSK 129

Query: 132 VKMEIVVVKEQVEAVIDKIIEEARTGEIGDGKIFVIPISDVIRVRTGERGERAERMTGGR 191
           VKMEIVV K+QVEAVIDKIIEEARTGEIGDGKIF++P+SDVIRVRTGERGE+AERMTGGR
Sbjct: 130 VKMEIVVSKDQVEAVIDKIIEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKAERMTGGR 189

Query: 192 SDMA 193
           +DM+
Sbjct: 190 ADMS 193

[Close]
BLAST of Cp4.1LG12g06280 vs. NCBI nr
Match: gi|645243062|ref|XP_008227809.1| (PREDICTED: nitrogen regulatory protein P-II homolog [Prunus mume])

HSP 1 Score: 254.6 bits (649), Expect = 1.4e-64
Identity = 138/194 (71.13%), Postives = 159/194 (81.96%), Query Frame = 1 

Query: 1   MAATATNPTALLLPFHSPLPKLPHFASSSITPNFA-VRFSQFNLAYKPS-NRRILPLVKA 60
           MAA A     LL P  S L +LP   SSSI       RFS FN+  K + N  +LP+++A
Sbjct: 1   MAAMAK--PGLLNPLRSHLNELPLIDSSSIRTKLREFRFSHFNVTLKHARNASVLPVIRA 60

Query: 61  QASLDYVPDSKFYKVEAILRPWRIQNVSSALLKMGIRGVTVSEVKGFGSQGGSTERHGGS 120
           Q+S DYVPDSKFYKVEAILRPWR+  VSSALLK+GIRGVTVS+V+GFG+QGGSTERHGGS
Sbjct: 61  QSSPDYVPDSKFYKVEAILRPWRVSQVSSALLKIGIRGVTVSDVRGFGAQGGSTERHGGS 120

Query: 121 EFSEDNFVAKVKMEIVVVKEQVEAVIDKIIEEARTGEIGDGKIFVIPISDVIRVRTGERG 180
           EF+EDNFVAKVKMEIVV K+QVEAV+DKIIE ARTGEIGDGKIFV+P+SDVIR+RTGERG
Sbjct: 121 EFTEDNFVAKVKMEIVVSKDQVEAVVDKIIEAARTGEIGDGKIFVVPVSDVIRIRTGERG 180

Query: 181 ERAERMTGGRSDMA 193
           ERAE+MTGG SD +
Sbjct: 181 ERAEKMTGGWSDQS 192

[Close]
BLAST of Cp4.1LG12g06280 vs. NCBI nr
Match: gi|596110267|ref|XP_007221504.1| (hypothetical protein PRUPE_ppa011791mg [Prunus persica])

HSP 1 Score: 253.8 bits (647), Expect = 2.4e-64
Identity = 137/194 (70.62%), Postives = 160/194 (82.47%), Query Frame = 1 

Query: 1   MAATATNPTALLLPFHSPLPKLPHFASSSITPNFA-VRFSQFNLAYKPS-NRRILPLVKA 60
           MAA A    +LL P  S L +LP   SSSI       RFS FN+  K + N  +LP+++A
Sbjct: 1   MAAMAK--PSLLNPLRSHLNELPLIDSSSIRTKLREFRFSHFNVTLKHARNASVLPVIRA 60

Query: 61  QASLDYVPDSKFYKVEAILRPWRIQNVSSALLKMGIRGVTVSEVKGFGSQGGSTERHGGS 120
           Q+S DYVPDSKFYKVEAILRPWR+  VSSALLK+GIRGVTVS+V+GFG+QGGSTERHGGS
Sbjct: 61  QSSPDYVPDSKFYKVEAILRPWRVSQVSSALLKIGIRGVTVSDVRGFGAQGGSTERHGGS 120

Query: 121 EFSEDNFVAKVKMEIVVVKEQVEAVIDKIIEEARTGEIGDGKIFVIPISDVIRVRTGERG 180
           EF+EDNFVAKVKMEIVV K+QVEAV+DKIIE A+TGEIGDGKIFV+P+SDVIR+RTGERG
Sbjct: 121 EFTEDNFVAKVKMEIVVSKDQVEAVVDKIIEAAKTGEIGDGKIFVVPVSDVIRIRTGERG 180

Query: 181 ERAERMTGGRSDMA 193
           ERAE+MTGG SD +
Sbjct: 181 ERAEKMTGGWSDQS 192

The following BLAST results are available for this feature:
BLAST of Cp4.1LG12g06280 vs. Swiss-Prot
Match NameE-valueIdentityDescription
GLNB_ARATH6.1e-6068.95Nitrogen regulatory protein P-II homolog OS=Arabidopsis thaliana GN=GLB1 PE=1 SV... [more]
GLNB_ORYSJ2.1e-5259.39Nitrogen regulatory protein P-II homolog OS=Oryza sativa subsp. japonica GN=GLB ... [more]
GLNB_AQUAE8.0e-2855.45Nitrogen regulatory protein P-II OS=Aquifex aeolicus (strain VF5) GN=glnB PE=1 S... [more]
GLNB_MICDP3.1e-2757.27Nitrogen regulatory protein P-II OS=Microchaete diplosiphon GN=glnB PE=3 SV=1[more]
GLNB_NOSP73.1e-2758.18Nitrogen regulatory protein P-II OS=Nostoc punctiforme (strain ATCC 29133 / PCC ... [more]
BLAST of Cp4.1LG12g06280 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K850_CUCSA2.7e-7583.67Uncharacterized protein OS=Cucumis sativus GN=Csa_7G414410 PE=3 SV=1[more]
A0A061DRE1_THECC4.4e-6573.37Nitrogen regulatory protein P-II OS=Theobroma cacao GN=TCM_004888 PE=3 SV=1[more]
M5XMG7_PRUPE1.7e-6470.62Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011791mg PE=3 SV=1[more]
A0A067JZV0_JATCU1.0e-6168.56Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14074 PE=3 SV=1[more]
Q9ZST5_RICCO8.6e-6168.75PII protein (Fragment) OS=Ricinus communis PE=2 SV=1[more]
BLAST of Cp4.1LG12g06280 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G01900.13.4e-6168.95 GLNB1 homolog[more]
BLAST of Cp4.1LG12g06280 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778728337|ref|XP_011659409.1|3.9e-7583.67PREDICTED: nitrogen regulatory protein P-II homolog [Cucumis sativus][more]
gi|659122940|ref|XP_008461402.1|8.8e-7583.67PREDICTED: nitrogen regulatory protein P-II homolog [Cucumis melo][more]
gi|590720023|ref|XP_007051217.1|6.3e-6573.37Nitrogen regulatory protein P-II [Theobroma cacao][more]
gi|645243062|ref|XP_008227809.1|1.4e-6471.13PREDICTED: nitrogen regulatory protein P-II homolog [Prunus mume][more]
gi|596110267|ref|XP_007221504.1|2.4e-6470.62hypothetical protein PRUPE_ppa011791mg [Prunus persica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0030234enzyme regulator activity
Vocabulary: Biological Process
TermDefinition
GO:0006808regulation of nitrogen utilization
Vocabulary: INTERPRO
TermDefinition
IPR017918N-reg_PII_CS
IPR015867N-reg_PII/ATP_PRibTrfase_C
IPR011322N-reg_PII-like_a/b
IPR002187N-reg_PII
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009718 anthocyanin-containing compound biosynthetic process
biological_process GO:0008652 cellular amino acid biosynthetic process
biological_process GO:0009744 response to sucrose
biological_process GO:0009416 response to light stimulus
biological_process GO:0006790 sulfur compound metabolic process
biological_process GO:0006950 response to stress
biological_process GO:0009746 response to hexose
biological_process GO:0009628 response to abiotic stimulus
biological_process GO:0019637 organophosphate metabolic process
biological_process GO:0006732 coenzyme metabolic process
biological_process GO:1901605 alpha-amino acid metabolic process
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0050790 regulation of catalytic activity
biological_process GO:0042325 regulation of phosphorylation
biological_process GO:0006808 regulation of nitrogen utilization
biological_process GO:0042304 regulation of fatty acid biosynthetic process
cellular_component GO:0005829 cytosol
cellular_component GO:0009534 chloroplast thylakoid
cellular_component GO:0005575 cellular_component
molecular_function GO:0000287 magnesium ion binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0010307 acetylglutamate kinase regulator activity
molecular_function GO:0030234 enzyme regulator activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG12g06280.1Cp4.1LG12g06280.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002187Nitrogen regulatory protein PIIPRINTSPR00340PIIGLNBcoord: 71..86
score: 7.5E-31coord: 92..110
score: 7.5E-31coord: 122..145
score: 7.5E-31coord: 153..173
score: 7.5
IPR002187Nitrogen regulatory protein PIIPFAMPF00543P-IIcoord: 73..175
score: 1.2
IPR002187Nitrogen regulatory protein PIISMARTSM00938P_II_3coord: 73..175
score: 6.4
IPR002187Nitrogen regulatory protein PIIPROFILEPS51343PII_GLNB_DOMcoord: 70..182
score: 36
IPR011322Nitrogen regulatory PII-like, alpha/betaunknownSSF54913GlnB-likecoord: 72..181
score: 1.78
IPR015867Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminalGENE3DG3DSA:3.30.70.120coord: 71..181
score: 1.2
IPR017918Nitrogen regulatory protein PII, conserved sitePROSITEPS00638PII_GLNB_CTERcoord: 153..166
scor
NoneNo IPR availablePANTHERPTHR30115NITROGEN REGULATORY PROTEIN P-IIcoord: 5..191
score: 3.0E
NoneNo IPR availablePANTHERPTHR30115:SF11NITROGEN REGULATORY PROTEIN P-II HOMOLOGcoord: 5..191
score: 3.0E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG12g06280Cucsa.128590Cucumber (Gy14) v1cgycpeB0334
Cp4.1LG12g06280CmaCh17G010110Cucurbita maxima (Rimu)cmacpeB371
Cp4.1LG12g06280CmoCh17G009880Cucurbita moschata (Rifu)cmocpeB335
Cp4.1LG12g06280Cla015168Watermelon (97103) v1cpewmB131
Cp4.1LG12g06280Csa7G414410Cucumber (Chinese Long) v2cpecuB161
Cp4.1LG12g06280MELO3C023629Melon (DHL92) v3.5.1cpemeB123
Cp4.1LG12g06280ClCG09G004810Watermelon (Charleston Gray)cpewcgB126
Cp4.1LG12g06280CSPI07G18430Wild cucumber (PI 183967)cpecpiB163
Cp4.1LG12g06280Lsi02G025030Bottle gourd (USVL1VR-Ls)cpelsiB113
Cp4.1LG12g06280MELO3C023629.2Melon (DHL92) v3.6.1cpemedB150
Cp4.1LG12g06280CsaV3_7G030270Cucumber (Chinese Long) v3cpecucB0188
Cp4.1LG12g06280Bhi09G000643Wax gourdcpewgoB0201
Cp4.1LG12g06280CsGy7G016840Cucumber (Gy14) v2cgybcpeB906
Cp4.1LG12g06280Carg07098Silver-seed gourdcarcpeB0158
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG12g06280Cucurbita pepo (Zucchini)cpecpeB157
Cp4.1LG12g06280Cucurbita pepo (Zucchini)cpecpeB181
Cp4.1LG12g06280Cucurbita pepo (Zucchini)cpecpeB185
Cp4.1LG12g06280Cucumber (Gy14) v1cgycpeB0185
Cp4.1LG12g06280Cucurbita maxima (Rimu)cmacpeB260
Cp4.1LG12g06280Cucurbita maxima (Rimu)cmacpeB465
Cp4.1LG12g06280Cucurbita maxima (Rimu)cmacpeB902
Cp4.1LG12g06280Cucurbita moschata (Rifu)cmocpeB224
Cp4.1LG12g06280Cucurbita moschata (Rifu)cmocpeB425
Cp4.1LG12g06280Cucurbita moschata (Rifu)cmocpeB839
Cp4.1LG12g06280Bottle gourd (USVL1VR-Ls)cpelsiB116
Cp4.1LG12g06280Watermelon (Charleston Gray)cpewcgB134
Cp4.1LG12g06280Watermelon (97103) v1cpewmB139
Cp4.1LG12g06280Watermelon (97103) v1cpewmB141
Cp4.1LG12g06280Silver-seed gourdcarcpeB0631
Cp4.1LG12g06280Silver-seed gourdcarcpeB1070
Cp4.1LG12g06280Silver-seed gourdcarcpeB1143
Cp4.1LG12g06280Wax gourdcpewgoB0171