Cp4.1LG12g04980 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG12g04980
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG12 : 4884590 .. 4886935 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGTTGTCATTGGGAATCCTTCAGGTTGCACATCTGGTGAAGAGCAAAAGCTGCGTTTCATTCTTTTCTGTGAAAGCTGCTACATTTTTGCATGCTTTTACATTTCTAACCACGTACCAAGAGTTCTAACAGGTGAGCTACTGGTTGATTGATAATGTTCATATTCTTTATGACAACTTGTATACAACTGAACATTCATAAATGAGGACATACCTCAATTTTTATTATCGACGTCGTAGTATACGTGCAATACTACCTCTTTTGTTCATGCCACCATAGAACGGATTATACATTTTTCTGGTACTTCATCTCTTTTTCAGTGTCGATTCGACTTATTTGCTTGGAGTATCAGATTCAGAGAAATTAAAACAACTGATCGAAACAAACTAAATGACTCATCTCTCTAAGATTTAATCAAAATTACTGACTAAATTATCTTTTACATCTATATAAACCAATTGAAATAAGAACAAATTAGATAGAAGAGTACTCTACGATAAACACAAACCTTGTTGATGGGCAAGTTGCAAGTTACTGCAAGACTTTGAAGAGTTTGATCAAAAGAATGCCAGGGGGCTGTAGAATCATAGCAACTTCTTCAGCAGTTGTTGTCAATTGGGTCATCTGATTCCGAATCATATTCCGAAAGCAAGTTATAGTCGGACATTTCTTCGGAACTATATCGAGCTTCATCTACTTCATCACGATGAAAATGTCCAAATGGATCTTCTTTTTTGTATAAACCTCTACTTCTATCTAGTTGACCTTTCCTCGACGTGTTTGCAAATTTTTCCCTGATGCTAACAAGAGGGTGCTTCTGCAGAAGCTTGTCACCGTCGTACGCTTCTCGAAGGATTACAGTCTGTGTGTCATTCTTCTTAGAGATGTAAAAGATACCAGGATGACGCTCAAACACTTTTGTGAACTTCTGAGGCATAGAGAACGGTTTGCGGAGGTTGCTTACGTTCTTGCGTTCGGTTTTCTTTTGCAAGGTAAGGTGGAGAAGTTCATGAAAGACTCCGACAATCCTCTTTTCGGACACATCGGTACGGGGATCCAAATGGGAGGCATCACAATATGGAGAAGTGTAAGGAAGCTTCTGCCATTCTCTTAACCAATCCATACATTTTCTCCTCAATCCAAAACCTCTTGTGAATCCAATTGGAAAGGCCAAACAGCCATTTCTTACGTCTTCTTCCACCTGTTGGGAACCAGCTTTCTTCTGCAGTTCAGAAACAGCAAGATCATCATCCCAGGATAGAAGTTTCAACCCAACTCGATCATCACGGAGCTGGACAAATGAAAACAAGTCATGGTTATATGGAACGAAAGAGTTCCGATAATCATATGGCAGCCCCATGTCCCATCTCAACTGGTCAATTGTCTGTAAAGGAAGTGTCGTACCACTCGTGAGCATTAGCAATCTGCAAAGCCTAGATCGAATATCCGTCCAACATTGTCGAACGACAACGATTTCTTCCTCATAAAGTTCCCTAGCCTCTGAAGTTAAGCCAAAAGATGGCACAGGAGTGCCTGCACTGTCACGAATATGTGACTCATGAAAGATAGAAGGGTATCTCCTAATAAAGGTAGACATCTTGACATCATCCGGAAGACCAAGCTGCCGACGATGGCGACGCAGACGGTAGATCGGTACGCATTGTTCAAGACTTGAAGAGATTATGGATACAAGAAAGCAAACAGCCTTGAGGTCCTTCTCAGCACTCACTACAGAATCTAAGTCTTTATCTTTCACCCATTTCAGTTTTATGTTCACCAGATAACGACTTTGCAGGTGATTTAAATTCGATCCTCTCTGGTTTTTACACGGGAAACCACAGAACTTAACCCTGCTAAACAACCAACTCACCATCTTCCACCATTCATCAGCAACAAATGAATTCCAGCAACTTCAAATATTTTGTTAAAAAATCGATCACACCCACCTAATAGATCATACAAAACACTCAAAATCAAGTCACAAATTCCACCAACGCCAAAAATATTCATGGCCAGAGCCACAAATAGTAAAAAAAAAATTGGAATGTTAACGTATTGGGTACTGATTGCACCACAAGTTGAGGTTTAAAGTAGGTTAGTTCCCGATGTTTCAAGAATCCAGATCAGTTGGGCATTTCGTCGAACACTTGTTCGGCATACCTTGCGACGTGTGAGATATGAACTTACTAGTTCCAAACCCCTTTCCTTCAGGCAATTCATATGAACAACATGAACAATCTTGCACTTAAAATTGGAAGAAGGATCAAAACTTACGGTAGAAGCGTGATTAGAAGTCAAATTGCTGGAGCCGCAACACCCATTTCCACCGCTGAATCTGTGTAA

mRNA sequence

ATGATAGATGTAAAAGATACCAGGATGACGCTCAAACACTTTTGTGAACTTCTGAGGCATAGAGAACGGTTTGCGGAGGTTGCTTACGTTCTTGCGTTCGGTAAGGTGGAGAAGTTCATGAAAGACTCCGACAATCCTCTTTTCGGACACATCGGTACGGGGATCCAAATGGGAGGCATCACAATATGGAGAAGTCTTTCTTCTGCAGTTCAGAAACAGCAAGATCATCATCCCAGGATAGAAGTTTCAACCCAACTCGATCATCACGGAGCTGGACAAATGAAAACAAGTCATGGTTATATGGAACGAAAGAGTTCCGATAATCATATGGCAGCCCCATGTCCCATCTCAACTGGTCAATTGTCTGTAAAGGAAGTGTCGTACCACTCGGTATCTCCTAATAAAGGTAGACATCTTGACATCATCCGGAAGACCAAGCTGCCGACGATGGCGACGCAGACGTTTTATGTTCACCAGATAACGACTTTGCAGGCAATTCATATGAACAACATGAACAATCTTGCACTTAAAATTGGAAGAAGGATCAAAACTTACGGTAGAAGCGTGATTAGAAGTCAAATTGCTGGAGCCGCAACACCCATTTCCACCGCTGAATCTGTGTAA

Coding sequence (CDS)

ATGATAGATGTAAAAGATACCAGGATGACGCTCAAACACTTTTGTGAACTTCTGAGGCATAGAGAACGGTTTGCGGAGGTTGCTTACGTTCTTGCGTTCGGTAAGGTGGAGAAGTTCATGAAAGACTCCGACAATCCTCTTTTCGGACACATCGGTACGGGGATCCAAATGGGAGGCATCACAATATGGAGAAGTCTTTCTTCTGCAGTTCAGAAACAGCAAGATCATCATCCCAGGATAGAAGTTTCAACCCAACTCGATCATCACGGAGCTGGACAAATGAAAACAAGTCATGGTTATATGGAACGAAAGAGTTCCGATAATCATATGGCAGCCCCATGTCCCATCTCAACTGGTCAATTGTCTGTAAAGGAAGTGTCGTACCACTCGGTATCTCCTAATAAAGGTAGACATCTTGACATCATCCGGAAGACCAAGCTGCCGACGATGGCGACGCAGACGTTTTATGTTCACCAGATAACGACTTTGCAGGCAATTCATATGAACAACATGAACAATCTTGCACTTAAAATTGGAAGAAGGATCAAAACTTACGGTAGAAGCGTGATTAGAAGTCAAATTGCTGGAGCCGCAACACCCATTTCCACCGCTGAATCTGTGTAA

Protein sequence

MIDVKDTRMTLKHFCELLRHRERFAEVAYVLAFGKVEKFMKDSDNPLFGHIGTGIQMGGITIWRSLSSAVQKQQDHHPRIEVSTQLDHHGAGQMKTSHGYMERKSSDNHMAAPCPISTGQLSVKEVSYHSVSPNKGRHLDIIRKTKLPTMATQTFYVHQITTLQAIHMNNMNNLALKIGRRIKTYGRSVIRSQIAGAATPISTAESV
Homology
[Close]
BLAST of Cp4.1LG12g04980 vs. TrEMBL
Match: A0A0A0K837_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G022365 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.4e-16
Identity = 49/69 (71.01%), Postives = 55/69 (79.71%), Query Frame = 1 

Query: 3  DVKDTRMTLKHFCELLRHRERFAEVAYVLAF-----GKVEKFMKDSDNPLFGHIGTGIQM 62
          DVKDTRMTLK F +LLR RE F++VAYVL F     GKV+K MKDSDNPLF +I TGIQM
Sbjct: 25 DVKDTRMTLKDFRKLLRQREWFSKVAYVLPFSFLLQGKVKKLMKDSDNPLFRYISTGIQM 84

Query: 63 GGITIWRSL 67
           GITIWRS+
Sbjct: 85 RGITIWRSV 93

[Close]
BLAST of Cp4.1LG12g04980 vs. NCBI nr
Match: gi|700190721|gb|KGN45925.1| (hypothetical protein Csa_6G022365 [Cucumis sativus])

HSP 1 Score: 94.7 bits (234), Expect = 2.0e-16
Identity = 49/69 (71.01%), Postives = 55/69 (79.71%), Query Frame = 1 

Query: 3  DVKDTRMTLKHFCELLRHRERFAEVAYVLAF-----GKVEKFMKDSDNPLFGHIGTGIQM 62
          DVKDTRMTLK F +LLR RE F++VAYVL F     GKV+K MKDSDNPLF +I TGIQM
Sbjct: 25 DVKDTRMTLKDFRKLLRQREWFSKVAYVLPFSFLLQGKVKKLMKDSDNPLFRYISTGIQM 84

Query: 63 GGITIWRSL 67
           GITIWRS+
Sbjct: 85 RGITIWRSV 93

The following BLAST results are available for this feature:
BLAST of Cp4.1LG12g04980 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG12g04980 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K837_CUCSA1.4e-1671.01Uncharacterized protein OS=Cucumis sativus GN=Csa_6G022365 PE=4 SV=1[more]
BLAST of Cp4.1LG12g04980 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG12g04980 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190721|gb|KGN45925.1|2.0e-1671.01hypothetical protein Csa_6G022365 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG12g04980.1Cp4.1LG12g04980.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG12g04980CmaCh17G005840Cucurbita maxima (Rimu)cmacpeB371
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG12g04980Silver-seed gourdcarcpeB0120
Cp4.1LG12g04980Silver-seed gourdcarcpeB0310
Cp4.1LG12g04980Cucumber (Chinese Long) v3cpecucB0170
Cp4.1LG12g04980Wax gourdcpewgoB0199
Cp4.1LG12g04980Cucurbita pepo (Zucchini)cpecpeB172
Cp4.1LG12g04980Cucumber (Gy14) v1cgycpeB0949
Cp4.1LG12g04980Cucurbita maxima (Rimu)cmacpeB906
Cp4.1LG12g04980Cucurbita moschata (Rifu)cmocpeB335
Cp4.1LG12g04980Cucurbita moschata (Rifu)cmocpeB842
Cp4.1LG12g04980Wild cucumber (PI 183967)cpecpiB148
Cp4.1LG12g04980Cucumber (Chinese Long) v2cpecuB146
Cp4.1LG12g04980Bottle gourd (USVL1VR-Ls)cpelsiB128
Cp4.1LG12g04980Watermelon (Charleston Gray)cpewcgB151
Cp4.1LG12g04980Watermelon (97103) v1cpewmB143
Cp4.1LG12g04980Cucumber (Gy14) v2cgybcpeB726