CmaCh17G005840 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh17G005840
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr17 : 4833953 .. 4835778 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCAAGTTGCAAGTTACTGCAAGACTTTAAAGAGTTTGATCAACTGCTGAAGAAGTTGGTGTAGAATCATAGCAACTTCTGAAGCAGTTGTTGTCGATCGGGTCATCTGATTCCAAATCATATTCCGAAAGCAAGTTATAGTCGGACATTTCTTCGGAACTGTATCGAGTTTCATCTACTTCATCACAACGAAAATGTCCAAATGGATCTTCTTTTTTGTATAAACCTCTGCTTCTATCTAGTTGACCTTTCCTCAACATGTTTGCAAATTTTTCCCTGATGCTAACAAGAGGGTGCTTCTGCAGAAGCTTGTCACCGTCGTAAGCTTCTCGAAGGATTACAGTCTGTGTGTCGTCCTTCTTAGAGATGTAAAAGATACCAGGATGACGCTCGAACACTTTTGTGAACTTCTGAGGCATAGAGAACGGTTTGCGGAGGTTGCTTACGTTCTTGCGTTCGGTTTTCTTTTGCAAGGTAAGGTGGAGAAGTTCATGAAAGACTCCGACAATCCTCTTTTCGGACACATCGGTACGGGGATCCAAATGGGAGGCATCACAATATGGAGAAGTGTAAGGAAGCTTCTGCCATTCTTTTAACCAATCCATACATTTTCTCCTCAATCCAAAACCTCTTGTGAATCCAATTGGAAAGGCCAAACAGCCATTTCTTACGTCTTCTTCCACCTGTTGGGAACCAGCGTTCTTCTGCAGTTCAGAAACAGCAAGATCATTTTCCCAGGATAGAAGTTTCAACCCGACTCGATCATCACGGAGCTGGACAAATGAAAACAAGTCATGGTTATATGGAATGAAAGAGTTCTGATAATCATATGGCAGCCCCATGTCCCATCTCAACTGGTCAATTGTCTGTAAAGGAAGTGTCGTACCACTCGTGAGCATTAGCAATCTGCAAAGCCTAGATCGAATATCCGTCCAACATTGTCGAACGACAACGATTTCTTCCTCATGAAGCTCCCTAGCCTCTGGAGTTAAGCCAAAAGATGGCACAGGAGTGCCTGCACTGTCACGAATATGTGACTCATGAAAGATAGAAGGGTATCTCCTAATAAAGGTAGACATCTTGACATCATTCGGAAGACCAAGCTGCCGACGATGGCAACGCAGACGGTAGATCGGTACGCATTGTTCAAGACTTGAAGAGATTATGGATACAAGAAAGCAAACAGCCTTGAGGTCCTTCTCAGCACTCACTACAGAATCTAAGTCTTTATCTTTCACCCATTTCAGTTTTATGTTTACCAGATAACGACTTTGCAGGTGATTTAAATTCGATCCTCTCTGGTTTTGACACGGGAAACCACAGAACTTAACCCTGCTAAACAACCAACTCACCATCTTCCACCATTCATCAGAAACATATGAATTCCAGCAACTTCAAATATTTTGTTAGAAAATCGATCACGACCCACCTAATAGATCATACAAAACACTCAAAACCAAGTCACAAATTCCACCAACGCCAACAATATTCATGGCCAGAGCCACAAATAGTAAAAAAATTGGAATGTTAACGTATTGGGTACTGATTGCACCACAAGTTAAGGTTTAAAGTTGGTTAGTTTCCGATGTTTCAAGAATCCAGATCAGTTGGGCATTTCGTCGAACACTAGTTCGGCATACCTTGCGACGTGTGAGATATAAACTTACTAGTTCCAAATCCCTTTCCTTCAGGCAATTCATATGAACAACATGAACAATCTTGCACTTCAAATTGGAAGATGGATCAAAACTTACAGTAGAAGCGTGATTAGAAGTCAAATTGCTGGAGCCGCAACAGCCATTTCCACCGCTGAATCTGTGTAA

mRNA sequence

ATGGGCAAGTTGCAATTGACCTTTCCTCAACATGTTTGCAAATTTTTCCCTGATGCTAACAAGAGGGTGCTTCTGCAGAAGCTTGTCACCGTCGTAAGCTTCTCGAAGGATTACAGTCTGTGTGTCGTCCTTCTTAGAGATGTAAAAGATACCAGGATGACGCTCGAACACTTTTGTGAACTTCTGAGGCATAGAGAACGGTTTGCGGAGGTTGCTTACGTTCTTGCGTTCGGTTTTCTTTTGCAAGGTAAGGTGGAGAAGTTCATGAAAGACTCCGACAATCCTCTTTTCGGACACATCGGTACGGGGATCCAAATGGGAGGCATCACAATATGGAGAAGTAGACATCTTGACATCATTCGGAAGACCAAGCTGCCGACGATGGCAACGCAGACGAAAATCGATCACGACCCACCTAATAGATCATACAAAACACTCAAAACCAAGTCACAAATTCCACCAACGCCAACAATATTCATGGCCAGAGCCACAAATAGTAAAAAAATTGGAATGTTAACGTATTGGGTACTGATTGCACCACAAGTTAAGGCAATTCATATGAACAACATGAACAATCTTGCACTTCAAATTGGAAGATGGATCAAAACTTACAGTAGAAGCGTGATTAGAAGTCAAATTGCTGGAGCCGCAACAGCCATTTCCACCGCTGAATCTGTGTAA

Coding sequence (CDS)

ATGGGCAAGTTGCAATTGACCTTTCCTCAACATGTTTGCAAATTTTTCCCTGATGCTAACAAGAGGGTGCTTCTGCAGAAGCTTGTCACCGTCGTAAGCTTCTCGAAGGATTACAGTCTGTGTGTCGTCCTTCTTAGAGATGTAAAAGATACCAGGATGACGCTCGAACACTTTTGTGAACTTCTGAGGCATAGAGAACGGTTTGCGGAGGTTGCTTACGTTCTTGCGTTCGGTTTTCTTTTGCAAGGTAAGGTGGAGAAGTTCATGAAAGACTCCGACAATCCTCTTTTCGGACACATCGGTACGGGGATCCAAATGGGAGGCATCACAATATGGAGAAGTAGACATCTTGACATCATTCGGAAGACCAAGCTGCCGACGATGGCAACGCAGACGAAAATCGATCACGACCCACCTAATAGATCATACAAAACACTCAAAACCAAGTCACAAATTCCACCAACGCCAACAATATTCATGGCCAGAGCCACAAATAGTAAAAAAATTGGAATGTTAACGTATTGGGTACTGATTGCACCACAAGTTAAGGCAATTCATATGAACAACATGAACAATCTTGCACTTCAAATTGGAAGATGGATCAAAACTTACAGTAGAAGCGTGATTAGAAGTCAAATTGCTGGAGCCGCAACAGCCATTTCCACCGCTGAATCTGTGTAA

Protein sequence

MGKLQLTFPQHVCKFFPDANKRVLLQKLVTVVSFSKDYSLCVVLLRDVKDTRMTLEHFCELLRHRERFAEVAYVLAFGFLLQGKVEKFMKDSDNPLFGHIGTGIQMGGITIWRSRHLDIIRKTKLPTMATQTKIDHDPPNRSYKTLKTKSQIPPTPTIFMARATNSKKIGMLTYWVLIAPQVKAIHMNNMNNLALQIGRWIKTYSRSVIRSQIAGAATAISTAESV
Homology
[Close]
BLAST of CmaCh17G005840 vs. TrEMBL
Match: A0A0A0K837_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G022365 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.3e-28
Identity = 67/92 (72.83%), Postives = 78/92 (84.78%), Query Frame = 1 

Query: 23  VLLQKLVTVVSFSKDYSLCVVLLRDVKDTRMTLEHFCELLRHRERFAEVAYVLAFGFLLQ 82
           + L KL+T++ FSKDYSL V+LLRDVKDTRMTL+ F +LLR RE F++VAYVL F FLLQ
Sbjct: 1   MFLYKLITIICFSKDYSLRVILLRDVKDTRMTLKDFRKLLRQREWFSKVAYVLPFSFLLQ 60

Query: 83  GKVEKFMKDSDNPLFGHIGTGIQMGGITIWRS 115
           GKV+K MKDSDNPLF +I TGIQM GITIWRS
Sbjct: 61  GKVKKLMKDSDNPLFRYISTGIQMRGITIWRS 92

[Close]
BLAST of CmaCh17G005840 vs. NCBI nr
Match: gi|700190721|gb|KGN45925.1| (hypothetical protein Csa_6G022365 [Cucumis sativus])

HSP 1 Score: 134.8 bits (338), Expect = 1.9e-28
Identity = 67/92 (72.83%), Postives = 78/92 (84.78%), Query Frame = 1 

Query: 23  VLLQKLVTVVSFSKDYSLCVVLLRDVKDTRMTLEHFCELLRHRERFAEVAYVLAFGFLLQ 82
           + L KL+T++ FSKDYSL V+LLRDVKDTRMTL+ F +LLR RE F++VAYVL F FLLQ
Sbjct: 1   MFLYKLITIICFSKDYSLRVILLRDVKDTRMTLKDFRKLLRQREWFSKVAYVLPFSFLLQ 60

Query: 83  GKVEKFMKDSDNPLFGHIGTGIQMGGITIWRS 115
           GKV+K MKDSDNPLF +I TGIQM GITIWRS
Sbjct: 61  GKVKKLMKDSDNPLFRYISTGIQMRGITIWRS 92

The following BLAST results are available for this feature:
BLAST of CmaCh17G005840 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh17G005840 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K837_CUCSA1.3e-2872.83Uncharacterized protein OS=Cucumis sativus GN=Csa_6G022365 PE=4 SV=1[more]
BLAST of CmaCh17G005840 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh17G005840 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190721|gb|KGN45925.1|1.9e-2872.83hypothetical protein Csa_6G022365 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh17G005840.1CmaCh17G005840.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh17G005840Cp4.1LG12g04980Cucurbita pepo (Zucchini)cmacpeB371
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh17G005840Cucumber (Gy14) v2cgybcmaB757
CmaCh17G005840Silver-seed gourdcarcmaB0109
CmaCh17G005840Silver-seed gourdcarcmaB0302
CmaCh17G005840Cucumber (Chinese Long) v3cmacucB0443
CmaCh17G005840Watermelon (97103) v2cmawmbB385
CmaCh17G005840Wax gourdcmawgoB0484
CmaCh17G005840Cucurbita maxima (Rimu)cmacmaB386
CmaCh17G005840Cucumber (Gy14) v1cgycmaB1000
CmaCh17G005840Cucurbita moschata (Rifu)cmacmoB353
CmaCh17G005840Cucurbita moschata (Rifu)cmacmoB378
CmaCh17G005840Wild cucumber (PI 183967)cmacpiB377
CmaCh17G005840Cucumber (Chinese Long) v2cmacuB373
CmaCh17G005840Watermelon (Charleston Gray)cmawcgB335
CmaCh17G005840Watermelon (97103) v1cmawmB337
CmaCh17G005840Cucurbita pepo (Zucchini)cmacpeB390
CmaCh17G005840Bottle gourd (USVL1VR-Ls)cmalsiB362