Cp4.1LG12g04780 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG12g04780
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUbiquitin carboxyl-terminal hydrolase family protein
LocationCp4.1LG12 : 4613225 .. 4614610 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCGCACATTTCATTCTTCCGCACAGAGCTTACTTTTCTGTTAAATCTGAATTTTGGGGTAAGAATTTGGATTTTCGGAACAGAAATGATAGTTTTAGTGATAATTCAAGAAAATCTCATGTGTATTTTCAACCGATTAGAGCTGGTGTGAAATGGAGGAAGGAGCTTCCGTTTGATAATGTAATACAGAGGGATAAGAAGCTGAAATTGGTTACTCGGATTAGGAAGATTCTAGTTCAGCATCATGATAATGTTATGTCACTTAGGGGTTTGGGTAAATTCAGGAGAGATTTAGGTGTACAGGAAAAGACGAGGCTAATTGAGTTGTTGAAGATGTTCCCTGCAGTATTTGAGATTGTAGAAGAAGAAGCGTTTTCTTTGAAATTTAAATTGACGGAAGAGGCTGAAAGGTTGTACTTCGAGGAGCTGAAGATCAGAAATGAAATGGAAGGTTTGTTGGTTACTAAGCTGAGGAAGTTACTGATGATGTCTGCTGATAAGCGAATATTGTTGGAGAAAATTGCACATTTGAGGACTGATTTTGGTCTTCCTTCCGAGTTTCGTGACACGATTTGCCATCGTTATCCTCAGTACTTTAGAGTTGTGGCAACCGAGAGCGGTCCAGCTCTCGAATTGACACACTGGGATCCTGAACTTGCTGTTTCTGCAGCAGAGTTAGCCGAGGAGGAGAACCGAGCTAGAGAATTGGAAGAGAAGAATTTGATTATTGACCGACCGCTGAAGTTTAATCGAGTGAAGCTACCTAAGGGGCTTAAGCTTTCGAAGAATGAGATGAGGAAAATGAATGAGTTTAGGGACATTCCTTATATCTCTCCGTATTCTGATTTCTCAGGGATTAAGGCAGGTACACCCCAGAAAGAGAAACATGCTTGTGGGGTTGTTCATGAGATTTTAAGCCTTACACTCGAGAAGAGAACTCTTGTTGATCATTTCACTCATTTCCGGGAGGAGTTTAGATTCTCCCAGCAGTTGAGGGGGATGCTAATAAGGCATCCCAATATGTTTTATGTCTCGTTGAAAGGGGATAAAAACTCGGTTTTCCTCAGAGAAGCATATCGCGATTCTCAGTTGATCGACAAAGATCGGTTGTTAATCATAAAGGAGAAGTTTCGAGGTCTTGTGGCTGTTCCTCAATTCAAAGGCAGAGGAGCTCCCGAAAGTGACACGGATTGGCGAGAAACCAATCATGGAGATGATATGAGAGGTGAAGAATGGTCTGATGTCGACGATGACGATGATGAATTCGACAACGATGGTGAGGATGACTGGATTGATGAACAGATCAATAACTTAGAAATGGCTGATCAGAGGCTTCTTTCTCCTCCTGCATTACCCGATGGACGGCCCCAAGAAAGATGGTGA

mRNA sequence

ATGTTCGCACATTTCATTCTTCCGCACAGAGCTTACTTTTCTGTTAAATCTGAATTTTGGGGTAAGAATTTGGATTTTCGGAACAGAAATGATAGTTTTAGTGATAATTCAAGAAAATCTCATGTGTATTTTCAACCGATTAGAGCTGGTGTGAAATGGAGGAAGGAGCTTCCGTTTGATAATGTAATACAGAGGGATAAGAAGCTGAAATTGGTTACTCGGATTAGGAAGATTCTAGTTCAGCATCATGATAATGTTATGTCACTTAGGGGTTTGGGTAAATTCAGGAGAGATTTAGGTGTACAGGAAAAGACGAGGCTAATTGAGTTGTTGAAGATGTTCCCTGCAGTATTTGAGATTGTAGAAGAAGAAGCGTTTTCTTTGAAATTTAAATTGACGGAAGAGGCTGAAAGGTTGTACTTCGAGGAGCTGAAGATCAGAAATGAAATGGAAGGTTTGTTGGTTACTAAGCTGAGGAAGTTACTGATGATGTCTGCTGATAAGCGAATATTGTTGGAGAAAATTGCACATTTGAGGACTGATTTTGGTCTTCCTTCCGAGTTTCGTGACACGATTTGCCATCGTTATCCTCAGTACTTTAGAGTTGTGGCAACCGAGAGCGGTCCAGCTCTCGAATTGACACACTGGGATCCTGAACTTGCTGTTTCTGCAGCAGAGTTAGCCGAGGAGGAGAACCGAGCTAGAGAATTGGAAGAGAAGAATTTGATTATTGACCGACCGCTGAAGTTTAATCGAGTGAAGCTACCTAAGGGGCTTAAGCTTTCGAAGAATGAGATGAGGAAAATGAATGAGTTTAGGGACATTCCTTATATCTCTCCGTATTCTGATTTCTCAGGGATTAAGGCAGGTACACCCCAGAAAGAGAAACATGCTTGTGGGGTTGTTCATGAGATTTTAAGCCTTACACTCGAGAAGAGAACTCTTGTTGATCATTTCACTCATTTCCGGGAGGAGTTTAGATTCTCCCAGCAGTTGAGGGGGATGCTAATAAGGCATCCCAATATGTTTTATGTCTCGTTGAAAGGGGATAAAAACTCGGTTTTCCTCAGAGAAGCATATCGCGATTCTCAGTTGATCGACAAAGATCGGTTGTTAATCATAAAGGAGAAGTTTCGAGGTCTTGTGGCTGTTCCTCAATTCAAAGGCAGAGGAGCTCCCGAAAGTGACACGGATTGGCGAGAAACCAATCATGGAGATGATATGAGAGGTGAAGAATGGTCTGATGTCGACGATGACGATGATGAATTCGACAACGATGGTGAGGATGACTGGATTGATGAACAGATCAATAACTTAGAAATGGCTGATCAGAGGCTTCTTTCTCCTCCTGCATTACCCGATGGACGGCCCCAAGAAAGATGGTGA

Coding sequence (CDS)

ATGTTCGCACATTTCATTCTTCCGCACAGAGCTTACTTTTCTGTTAAATCTGAATTTTGGGGTAAGAATTTGGATTTTCGGAACAGAAATGATAGTTTTAGTGATAATTCAAGAAAATCTCATGTGTATTTTCAACCGATTAGAGCTGGTGTGAAATGGAGGAAGGAGCTTCCGTTTGATAATGTAATACAGAGGGATAAGAAGCTGAAATTGGTTACTCGGATTAGGAAGATTCTAGTTCAGCATCATGATAATGTTATGTCACTTAGGGGTTTGGGTAAATTCAGGAGAGATTTAGGTGTACAGGAAAAGACGAGGCTAATTGAGTTGTTGAAGATGTTCCCTGCAGTATTTGAGATTGTAGAAGAAGAAGCGTTTTCTTTGAAATTTAAATTGACGGAAGAGGCTGAAAGGTTGTACTTCGAGGAGCTGAAGATCAGAAATGAAATGGAAGGTTTGTTGGTTACTAAGCTGAGGAAGTTACTGATGATGTCTGCTGATAAGCGAATATTGTTGGAGAAAATTGCACATTTGAGGACTGATTTTGGTCTTCCTTCCGAGTTTCGTGACACGATTTGCCATCGTTATCCTCAGTACTTTAGAGTTGTGGCAACCGAGAGCGGTCCAGCTCTCGAATTGACACACTGGGATCCTGAACTTGCTGTTTCTGCAGCAGAGTTAGCCGAGGAGGAGAACCGAGCTAGAGAATTGGAAGAGAAGAATTTGATTATTGACCGACCGCTGAAGTTTAATCGAGTGAAGCTACCTAAGGGGCTTAAGCTTTCGAAGAATGAGATGAGGAAAATGAATGAGTTTAGGGACATTCCTTATATCTCTCCGTATTCTGATTTCTCAGGGATTAAGGCAGGTACACCCCAGAAAGAGAAACATGCTTGTGGGGTTGTTCATGAGATTTTAAGCCTTACACTCGAGAAGAGAACTCTTGTTGATCATTTCACTCATTTCCGGGAGGAGTTTAGATTCTCCCAGCAGTTGAGGGGGATGCTAATAAGGCATCCCAATATGTTTTATGTCTCGTTGAAAGGGGATAAAAACTCGGTTTTCCTCAGAGAAGCATATCGCGATTCTCAGTTGATCGACAAAGATCGGTTGTTAATCATAAAGGAGAAGTTTCGAGGTCTTGTGGCTGTTCCTCAATTCAAAGGCAGAGGAGCTCCCGAAAGTGACACGGATTGGCGAGAAACCAATCATGGAGATGATATGAGAGGTGAAGAATGGTCTGATGTCGACGATGACGATGATGAATTCGACAACGATGGTGAGGATGACTGGATTGATGAACAGATCAATAACTTAGAAATGGCTGATCAGAGGCTTCTTTCTCCTCCTGCATTACCCGATGGACGGCCCCAAGAAAGATGGTGA

Protein sequence

MFAHFILPHRAYFSVKSEFWGKNLDFRNRNDSFSDNSRKSHVYFQPIRAGVKWRKELPFDNVIQRDKKLKLVTRIRKILVQHHDNVMSLRGLGKFRRDLGVQEKTRLIELLKMFPAVFEIVEEEAFSLKFKLTEEAERLYFEELKIRNEMEGLLVTKLRKLLMMSADKRILLEKIAHLRTDFGLPSEFRDTICHRYPQYFRVVATESGPALELTHWDPELAVSAAELAEEENRARELEEKNLIIDRPLKFNRVKLPKGLKLSKNEMRKMNEFRDIPYISPYSDFSGIKAGTPQKEKHACGVVHEILSLTLEKRTLVDHFTHFREEFRFSQQLRGMLIRHPNMFYVSLKGDKNSVFLREAYRDSQLIDKDRLLIIKEKFRGLVAVPQFKGRGAPESDTDWRETNHGDDMRGEEWSDVDDDDDEFDNDGEDDWIDEQINNLEMADQRLLSPPALPDGRPQERW
Homology
[Close]
BLAST of Cp4.1LG12g04780 vs. Swiss-Prot
Match: RPD1_ARATH (Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Arabidopsis thaliana GN=RPD1 PE=1 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.9e-35
Identity = 107/351 (30.48%), Postives = 188/351 (53.56%), Query Frame = 1 

Query: 59  FDNVIQRDKKLKLVTRIRKILVQHHDNVMSLRGLGKFRRDLGVQEKTRLI-ELLKMFPAV 118
           +DN ++ +KK++ V +   +++   ++ +++  L    R LG+  K       L  FP V
Sbjct: 52  YDNYMEVEKKIRKVVKFHSLILSQPNHTIAISLLDTLARRLGLGFKQHEPGAFLLKFPHV 111

Query: 119 FEIVEEEAFSLKF-KLTEEAERLYFEELKIRNEMEGLL------VTKLRKLLMMSADKRI 178
           FEI E     + + +LT +A        +IR+E E +L      VT+LRKL+MMS   RI
Sbjct: 112 FEIYEHPVQRILYCRLTRKALD------QIRHEHEAVLDQIPDAVTRLRKLVMMSNTGRI 171

Query: 179 LLEKIAHLRTDFGLPSEFRDTICHRYPQYFRVVATES--GPALELTHWDPELAVSAAELA 238
            LE +   RT+FGLP +F  ++  ++PQ+FR++  E      +E+   DP L++ A E  
Sbjct: 172 RLEHVRIARTEFGLPEDFEYSVILKHPQFFRLIDGEETRDKYIEIVEKDPNLSICAIE-- 231

Query: 239 EEENRARELEEKNLIID-RPLKFN-RVKLPKGLKLSKNEMRKMNEFRDIPYISPYSDFSG 298
               R RE+E +   ID   ++F+  V  P G K+ K     + +++ +PY SPY D SG
Sbjct: 232 ----RVREIEYRTKGIDAEDVRFSFVVNFPPGFKIGKYFRIAVWKWQRLPYWSPYEDISG 291

Query: 299 IKAGTPQK----EKHACGVVHEILSLTLEKRTLVDHFTHFREEFRFSQQLRGMLIRHPNM 358
               + +     EK +   +HE+LSLT+EK+  ++   HFR      ++L+  L++H  +
Sbjct: 292 YDLRSMEAQNRLEKRSVACIHELLSLTVEKKITLERIAHFRNVMNLPKKLKEFLLQHQGI 351

Query: 359 FYVSLKGD---KNSVFLREAYRDSQLIDKDRLLIIKEKFRGLVAVPQFKGR 391
           FY+S +G+    ++VFLRE Y+  +L++ + + + + +   LV +   K +
Sbjct: 352 FYISTRGNYGKLHTVFLREGYKRGELVEPNDVYLARRRLAELVLMSPRKAK 390

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BLAST of Cp4.1LG12g04780 vs. TrEMBL
Match: A0A067K891_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14276 PE=4 SV=1)

HSP 1 Score: 622.1 bits (1603), Expect = 5.5e-175
Identity = 332/486 (68.31%), Postives = 386/486 (79.42%), Query Frame = 1 

Query: 16  KSEFWGKNLDFRNRNDSFSDNSRKSHVYFQPIRAGVKWRKELPFDNVIQRDKKLKLVTRI 75
           +S FWGK+L F+ +   F    RK+HV FQP+RA VK RKELPFDNVIQRDKKLKLV +I
Sbjct: 47  RSHFWGKSLVFQEKIGPFGRTLRKTHVPFQPVRAVVKRRKELPFDNVIQRDKKLKLVLKI 106

Query: 76  RKILVQHHDNVMSLRGLGKFRRDLGVQEKTRLIELLKMFPAVFEIVEEEAFSLKFKLTEE 135
           RKILV   D +M LR LG+FRR+LGV+++ R I LLK FPAVF+IV+E AFSLKFKLT E
Sbjct: 107 RKILVNQPDRIMELRQLGRFRRELGVKKQRRFIALLKKFPAVFDIVQEGAFSLKFKLTPE 166

Query: 136 AERLYFEELKIRNEMEGLLVTKLRKLLMMSADKRILLEKIAHLRTDFGLPSEFRDTICHR 195
           AERLY EELK+RNEME LLV KLRKLLMMS +KRILLEKIAHL+TDFGLP+EFRDTICHR
Sbjct: 167 AERLYLEELKVRNEMEDLLVVKLRKLLMMSLEKRILLEKIAHLKTDFGLPTEFRDTICHR 226

Query: 196 YPQYFRVVATESGPALELTHWDPELAVSAAELAEEENRARELEEKNLIIDRPLKFNRVKL 255
           YPQYFRVVATE GPALELTHWDPELAVSAAEL+EEENRARELEE++LIIDRP KFNRVKL
Sbjct: 227 YPQYFRVVATERGPALELTHWDPELAVSAAELSEEENRARELEERDLIIDRPPKFNRVKL 286

Query: 256 PKGLKLSKNEMRKMNEFRDIPYISPYSDFSGIKAGTPQKEKHACGVVHEILSLTLEKRTL 315
           PKGL+LSK+EMR +++FRD+PYISPYSDFS +++GTP+KEKHACGVVHEILSLT+EKRTL
Sbjct: 287 PKGLQLSKSEMRNISKFRDMPYISPYSDFSHLRSGTPEKEKHACGVVHEILSLTVEKRTL 346

Query: 316 VDHFTHFREEFRFSQQLRGMLIRHPNMFYVSLKGDKNSVFLREAYRDSQLIDKDRLLIIK 375
           VDH THFREEFRFSQQ+RGMLIRHP+MFYVSLKGD++SVFLREAYRDS L+DKDRLL+IK
Sbjct: 347 VDHLTHFREEFRFSQQVRGMLIRHPDMFYVSLKGDRDSVFLREAYRDSHLVDKDRLLLIK 406

Query: 376 EKFRGLVAVPQFKGRGAP-----------ESDTDWRETNHGDDMRGEEWSDV-------- 435
           EKFR LV VP+F  RGAP           E+ TD  E   G+++  E+WSD+        
Sbjct: 407 EKFRALVNVPRFPRRGAPSNGAPSRGAERENGTDELEDGSGEEV--EDWSDIDSYMAGDG 466

Query: 436 -DDDDDEFDNDGEDDWIDE------------------QINNLEMA--DQRLLSPPALPDG 462
            DDDDD+  ND EDDW DE                   IN+ + +  ++  +  PA PDG
Sbjct: 467 LDDDDDDDGNDYEDDWSDEDDDTPPDFDENVKIHLSKSINHSDKSTKNEEKVPEPAFPDG 526

[Close]
BLAST of Cp4.1LG12g04780 vs. TrEMBL
Match: W9RAG9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_017593 PE=4 SV=1)

HSP 1 Score: 612.5 bits (1578), Expect = 4.3e-172
Identity = 334/488 (68.44%), Postives = 377/488 (77.25%), Query Frame = 1 

Query: 11  AYFSVKSEFWGKNLDFRNRNDSFSDNSRKSHVYFQPIRAGVKWRKELPFDNVIQRDKKLK 70
           ++FS KS+F GK+L  + R + F ++ RK+H  F PIRA VK RKE+PFDNVIQRDKKLK
Sbjct: 39  SHFS-KSQFLGKSLVLQVRRNGFLNSPRKTHFPFGPIRAAVKRRKEIPFDNVIQRDKKLK 98

Query: 71  LVTRIRKILVQHHDNVMSLRGLGKFRRDLGVQEKTRLIELLKMFPAVFEIVEEEAFSLKF 130
           LV +IRKILV   D +MSL+ LG++RRDLG+Q+K R I LLK FPAVFEIVEE  FSLKF
Sbjct: 99  LVLKIRKILVGQPDRIMSLKDLGRYRRDLGLQKKRRFIALLKKFPAVFEIVEEGVFSLKF 158

Query: 131 KLTEEAERLYFEELKIRNEMEGLLVTKLRKLLMMSADKRILLEKIAHLRTDFGLPSEFRD 190
           KLT EAERLYFEELK++NEME LLV KLRKLLMMS +KRILLEKIAHL+TD GLP EFRD
Sbjct: 159 KLTPEAERLYFEELKVKNEMEDLLVVKLRKLLMMSMEKRILLEKIAHLKTDLGLPVEFRD 218

Query: 191 TICHRYPQYFRVVATESGPALELTHWDPELAVSAAELAEEENRARELEEKNLIIDRPLKF 250
           TICHRYPQYFRVVAT  GPALELTHWDPELAVSAAEL EEENRARELEEKNLIIDRPLKF
Sbjct: 219 TICHRYPQYFRVVATGRGPALELTHWDPELAVSAAELHEEENRARELEEKNLIIDRPLKF 278

Query: 251 NRVKLPKGLKLSKNEMRKMNEFRDIPYISPYSDFSGIKAGTPQKEKHACGVVHEILSLTL 310
           NRVKLPKGL LSK EMRK+++FRD+PYISPYSDFSG++ GT +KEKHACGVVHEILSLTL
Sbjct: 279 NRVKLPKGLVLSKGEMRKISQFRDLPYISPYSDFSGLRQGTMEKEKHACGVVHEILSLTL 338

Query: 311 EKRTLVDHFTHFREEFRFSQQLRGMLIRHPNMFYVSLKGDKNSVFLREAYRDSQLIDKDR 370
           EKRTLVDH THFREEFRFSQQLRGMLIRHP+M YVSLKGD++SVFLREAYRDSQL+DKDR
Sbjct: 339 EKRTLVDHLTHFREEFRFSQQLRGMLIRHPDMLYVSLKGDRDSVFLREAYRDSQLVDKDR 398

Query: 371 LLIIKEKFRGLVAVPQFKGRGAPESDTD----WRETNHGDDMRGEEWSDVDD--DDDEF- 430
           L IIKEK   LVAVP+F  RGAP+   D      ET  G    GE WS++DD   D  F 
Sbjct: 399 LTIIKEKLHSLVAVPRFLKRGAPQRTADVAEESNETEDGTGEIGEGWSNIDDFMGDSGFD 458

Query: 431 -DNDGEDDWIDE-----------------------------QINNLEMADQRLLSPPALP 462
            D+DGEDDW ++                             Q       D++ +  P LP
Sbjct: 459 DDDDGEDDWSEDDWSEDDDETPPDFDDDGDTMSIGVGNSSKQETKSRRRDEKKVLVPVLP 518

[Close]
BLAST of Cp4.1LG12g04780 vs. TrEMBL
Match: F6I6B4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0046g01070 PE=4 SV=1)

HSP 1 Score: 610.1 bits (1572), Expect = 2.2e-171
Identity = 329/482 (68.26%), Postives = 375/482 (77.80%), Query Frame = 1 

Query: 16  KSEFWGKNLDFRNRNDSFSDNSRKSHVYFQPIRAGVKWRKELPFDNVIQRDKKLKLVTRI 75
           K+ F G +L  R R D    N RK+HV   PIRA VK RKELPFDNV+QRDKKLKLV +I
Sbjct: 49  KTPFLGGSLVLRERVDCLR-NLRKTHVPVGPIRAAVKRRKELPFDNVVQRDKKLKLVLKI 108

Query: 76  RKILVQHHDNVMSLRGLGKFRRDLGVQEKTRLIELLKMFPAVFEIVEEEAFSLKFKLTEE 135
           RK+LV   D VMSLR LGK+RR+LG+ +K R I LLK FPA+FEIVEE  +SLKFKLT E
Sbjct: 109 RKLLVSQPDRVMSLRQLGKYRRELGLTKKRRFIALLKKFPAIFEIVEEGVYSLKFKLTPE 168

Query: 136 AERLYFEELKIRNEMEGLLVTKLRKLLMMSADKRILLEKIAHLRTDFGLPSEFRDTICHR 195
           AERLY EELKIRNEME LLV KLRKLLMMS +KRILLEKIAHL+TD GLPSEFRDTIC R
Sbjct: 169 AERLYLEELKIRNEMEDLLVVKLRKLLMMSMEKRILLEKIAHLKTDLGLPSEFRDTICQR 228

Query: 196 YPQYFRVVATESGPALELTHWDPELAVSAAELAEEENRARELEEKNLIIDRPLKFNRVKL 255
           YPQYF+VV TE GPALELTHWDPELAVSAAE+ EEE R RELEE++LIIDRP KFNRVKL
Sbjct: 229 YPQYFKVVQTERGPALELTHWDPELAVSAAEIWEEEKRVRELEERDLIIDRPPKFNRVKL 288

Query: 256 PKGLKLSKNEMRKMNEFRDIPYISPYSDFSGIKAGTPQKEKHACGVVHEILSLTLEKRTL 315
           PKGL LSK EMR+++ FRD+PYISPYSDFSG+++G+P+KEKHACGVVHE+LSLT+EKRTL
Sbjct: 289 PKGLSLSKGEMRRLSRFRDMPYISPYSDFSGLRSGSPEKEKHACGVVHEMLSLTVEKRTL 348

Query: 316 VDHFTHFREEFRFSQQLRGMLIRHPNMFYVSLKGDKNSVFLREAYRDSQLIDKDRLLIIK 375
           VDH THFREEFRFSQQLRGMLIRHP+MFYVSLKGD++SVFLREAY DSQLI+KDRLL+IK
Sbjct: 349 VDHLTHFREEFRFSQQLRGMLIRHPDMFYVSLKGDRDSVFLREAYSDSQLIEKDRLLVIK 408

Query: 376 EKFRGLVAVPQFKGRGAPESDTD----WRETNHGDDMRGEEWSDV--------DDDDDEF 435
           EK R LV+VP+F+ RGAP SD D      E  HG    GEEWSDV        DDDDD+ 
Sbjct: 409 EKLRALVSVPRFRRRGAPRSDADVVEGTDEQEHGSGEEGEEWSDVDNLMGDGLDDDDDDD 468

Query: 436 DNDGEDDWIDE------------------------QINNLEMADQRLLSPPALPDGRPQE 462
           D+D EDDW DE                        Q++NL   ++++L  P  PDGRP+E
Sbjct: 469 DDDEEDDWSDEDDNTPPDFDEDDGTMKFELNKEVKQVDNLGKDEEKVL-VPMFPDGRPRE 528

[Close]
BLAST of Cp4.1LG12g04780 vs. TrEMBL
Match: A5AR37_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_004914 PE=4 SV=1)

HSP 1 Score: 610.1 bits (1572), Expect = 2.2e-171
Identity = 329/482 (68.26%), Postives = 375/482 (77.80%), Query Frame = 1 

Query: 16  KSEFWGKNLDFRNRNDSFSDNSRKSHVYFQPIRAGVKWRKELPFDNVIQRDKKLKLVTRI 75
           K+ F G +L  R R D    N RK+HV   PIRA VK RKELPFDNV+QRDKKLKLV +I
Sbjct: 49  KTPFLGGSLVLRERVDCLR-NLRKTHVPVGPIRAAVKRRKELPFDNVVQRDKKLKLVLKI 108

Query: 76  RKILVQHHDNVMSLRGLGKFRRDLGVQEKTRLIELLKMFPAVFEIVEEEAFSLKFKLTEE 135
           RK+LV   D VMSLR LGK+RR+LG+ +K R I LLK FPA+FEIVEE  +SLKFKLT E
Sbjct: 109 RKLLVSQPDRVMSLRQLGKYRRELGLTKKRRFIALLKKFPAIFEIVEEGVYSLKFKLTPE 168

Query: 136 AERLYFEELKIRNEMEGLLVTKLRKLLMMSADKRILLEKIAHLRTDFGLPSEFRDTICHR 195
           AERLY EELKIRNEME LLV KLRKLLMMS +KRILLEKIAHL+TD GLPSEFRDTIC R
Sbjct: 169 AERLYLEELKIRNEMEDLLVVKLRKLLMMSMEKRILLEKIAHLKTDLGLPSEFRDTICQR 228

Query: 196 YPQYFRVVATESGPALELTHWDPELAVSAAELAEEENRARELEEKNLIIDRPLKFNRVKL 255
           YPQYF+VV TE GPALELTHWDPELAVSAAE+ EEE R RELEE++LIIDRP KFNRVKL
Sbjct: 229 YPQYFKVVQTERGPALELTHWDPELAVSAAEIWEEEKRVRELEERDLIIDRPPKFNRVKL 288

Query: 256 PKGLKLSKNEMRKMNEFRDIPYISPYSDFSGIKAGTPQKEKHACGVVHEILSLTLEKRTL 315
           PKGL LSK EMR+++ FRD+PYISPYSDFSG+++G+P+KEKHACGVVHE+LSLT+EKRTL
Sbjct: 289 PKGLSLSKGEMRRLSRFRDMPYISPYSDFSGLRSGSPEKEKHACGVVHEMLSLTVEKRTL 348

Query: 316 VDHFTHFREEFRFSQQLRGMLIRHPNMFYVSLKGDKNSVFLREAYRDSQLIDKDRLLIIK 375
           VDH THFREEFRFSQQLRGMLIRHP+MFYVSLKGD++SVFLREAY DSQLI+KDRLL+IK
Sbjct: 349 VDHLTHFREEFRFSQQLRGMLIRHPDMFYVSLKGDRDSVFLREAYSDSQLIEKDRLLVIK 408

Query: 376 EKFRGLVAVPQFKGRGAPESDTD----WRETNHGDDMRGEEWSDV--------DDDDDEF 435
           EK R LV+VP+F+ RGAP SD D      E  HG    GEEWSDV        DDDDD+ 
Sbjct: 409 EKLRALVSVPRFRRRGAPRSDADVVEGTDEQEHGSGEEGEEWSDVDNLMGDGLDDDDDDD 468

Query: 436 DNDGEDDWIDE------------------------QINNLEMADQRLLSPPALPDGRPQE 462
           D+D EDDW DE                        Q++NL   ++++L  P  PDGRP+E
Sbjct: 469 DDDEEDDWSDEDDNTPPDFDEDDGTMKFELNKEVKQVDNLGKDEEKVL-VPMFPDGRPRE 528

[Close]
BLAST of Cp4.1LG12g04780 vs. TrEMBL
Match: A0A0A0K9R9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G327750 PE=4 SV=1)

HSP 1 Score: 608.6 bits (1568), Expect = 6.3e-171
Identity = 311/366 (84.97%), Postives = 333/366 (90.98%), Query Frame = 1 

Query: 5   FILPHRAYFSVKSEFWGKNLDFRNRNDSFSDNSRKSHVYFQPIRAGVKWRKELPFDNVIQ 64
           FIL H++Y+SVKS+FWGKNLD RNRND    N RKSHV FQPIRA VK RKELPFDNVIQ
Sbjct: 20  FILGHKSYYSVKSQFWGKNLDLRNRND----NLRKSHVPFQPIRAVVKRRKELPFDNVIQ 79

Query: 65  RDKKLKLVTRIRKILVQHHDNVMSLRGLGKFRRDLGVQEKTRLIELLKMFPAVFEIVEEE 124
           +DKKLKL  RIRKILVQ  D VMSL+ LG+FR+DLG++ K R+I LLK FPAVFE+VEE 
Sbjct: 80  KDKKLKLALRIRKILVQQPDRVMSLKDLGRFRKDLGLERKRRIIALLKKFPAVFEVVEEG 139

Query: 125 AFSLKFKLTEEAERLYFEELKIRNEMEGLLVTKLRKLLMMSADKRILLEKIAHLRTDFGL 184
           AF+LKFKLT EAERLY EELKIRNEMEGLLV KLRKLLMMSADKRILLEKIAHLRTD GL
Sbjct: 140 AFALKFKLTAEAERLYLEELKIRNEMEGLLVIKLRKLLMMSADKRILLEKIAHLRTDLGL 199

Query: 185 PSEFRDTICHRYPQYFRVVATESGPALELTHWDPELAVSAAELAEEENRARELEEKNLII 244
           P EFRDTICHRYPQYFRVVAT+ GPALELTHWDPELAVSAAELAEEENRARELEEKNLII
Sbjct: 200 PLEFRDTICHRYPQYFRVVATKRGPALELTHWDPELAVSAAELAEEENRARELEEKNLII 259

Query: 245 DRPLKFNRVKLPKGLKLSKNEMRKMNEFRDIPYISPYSDFSGIKAGTPQKEKHACGVVHE 304
           DRPLKFNRVKLPKGL LSK EMRK+++FRDIPYISPYSDFSG+KAGTP KEKHAC VVHE
Sbjct: 260 DRPLKFNRVKLPKGLNLSKGEMRKISQFRDIPYISPYSDFSGLKAGTPPKEKHACAVVHE 319

Query: 305 ILSLTLEKRTLVDHFTHFREEFRFSQQLRGMLIRHPNMFYVSLKGDKNSVFLREAYRDSQ 364
           IL+LTLEKRTLVDH THFREEFRFSQQLRGMLIRHP+MFYVSLKGD++SVFLREAYR SQ
Sbjct: 320 ILNLTLEKRTLVDHLTHFREEFRFSQQLRGMLIRHPDMFYVSLKGDRDSVFLREAYRGSQ 379

Query: 365 LIDKDR 371
           LIDKDR
Sbjct: 380 LIDKDR 381

[Close]
BLAST of Cp4.1LG12g04780 vs. TAIR10
Match: AT4G01037.1 (AT4G01037.1 Ubiquitin carboxyl-terminal hydrolase family protein)

HSP 1 Score: 550.8 bits (1418), Expect = 7.9e-157
Identity = 299/497 (60.16%), Postives = 364/497 (73.24%), Query Frame = 1 

Query: 7   LPHRAYFSVKSEFWGKNLDFRNRNDSFSDNSRKSHVYFQPIRAGVKWRKELPFDNVIQRD 66
           LP     + +S+F G+ L   N+   F   SRK+ V  +P+RA VK RKEL FD+V+QRD
Sbjct: 33  LPMSTIRAARSQFMGEGLILGNKY-GFWSTSRKTRVVVEPVRAAVKRRKELTFDSVVQRD 92

Query: 67  KKLKLVTRIRKILVQHHDNVMSLRGLGKFRRDLGVQEKTRLIELLKMFPAVFEIVEEEAF 126
           KKLKLV  IRKILV   D +MSLRGLGK+RRDLG++++ R I LL+ +P VFEIVEE A+
Sbjct: 93  KKLKLVLNIRKILVSQPDRMMSLRGLGKYRRDLGLKKRRRFIALLRKYPGVFEIVEEGAY 152

Query: 127 SLKFKLTEEAERLYFEELKIRNEMEGLLVTKLRKLLMMSADKRILLEKIAHLRTDFGLPS 186
           SL+FK+T EAERLY +E++IRNE+E +LV KLRKL+MMS DKRILLEKI+HL+TD GLP 
Sbjct: 153 SLRFKMTSEAERLYLDEMRIRNELEDVLVVKLRKLVMMSIDKRILLEKISHLKTDLGLPL 212

Query: 187 EFRDTICHRYPQYFRVVATESGPALELTHWDPELAVSAAELAEEENRARELEEKNLIIDR 246
           EFRDTIC RYPQYFRVV T  GPALELTHWDPELAVSAAEL+E++NR RE EE+NLIIDR
Sbjct: 213 EFRDTICQRYPQYFRVVPTPRGPALELTHWDPELAVSAAELSEDDNRTRESEERNLIIDR 272

Query: 247 PLKFNRVKLPKGLKLSKNEMRKMNEFRDIPYISPYSDFSGIKAGTPQKEKHACGVVHEIL 306
           P KFNRVKLP+GL LSK+E RK+++FRD+ YISPY DFS +++GT +KEKHACGV+HE+L
Sbjct: 273 PPKFNRVKLPRGLNLSKSETRKISQFRDMQYISPYKDFSHLRSGTLEKEKHACGVIHELL 332

Query: 307 SLTLEKRTLVDHFTHFREEFRFSQQLRGMLIRHPNMFYVSLKGDKNSVFLREAYRDSQLI 366
           SLT EKRTLVDH THFREEFRFSQQLRGMLIRHP++FYVSLKG+++SVFLREAYR+S+LI
Sbjct: 333 SLTTEKRTLVDHLTHFREEFRFSQQLRGMLIRHPDLFYVSLKGERDSVFLREAYRNSELI 392

Query: 367 DKDRLLIIKEKFRGLVAVPQFKGRGAPESDTDWRETN-HGDDMRG---------EEWSDV 426
           DKD L ++KEK R LV+VP+F  RG P  D + RE    G D  G         EEWSDV
Sbjct: 393 DKDPLTLVKEKMRALVSVPRFPRRGGPRKDEEGREVEIDGSDADGEEEEEESDAEEWSDV 452

Query: 427 D---------DDDD--------------EFDNDGEDDWIDEQINNLEMADQRLLSP---- 462
           D         +DDD               FD+D ED+  D     L  + ++  SP    
Sbjct: 453 DGYLEGEDGGNDDDGDWTDDEGEEDVPPNFDDDDEDEEEDSVKIGLSPSSRKSSSPRKKE 512

[Close]
BLAST of Cp4.1LG12g04780 vs. TAIR10
Match: AT5G62990.1 (AT5G62990.1 Ubiquitin carboxyl-terminal hydrolase family protein)

HSP 1 Score: 222.6 bits (566), Expect = 4.9e-58
Identity = 141/392 (35.97%), Postives = 219/392 (55.87%), Query Frame = 1 

Query: 60  DNVIQRDKKLKLVTRIRKILVQHHDNVMSLRGLGKFRRDLGVQEKTRLIELLKMFPAVFE 119
           D  + +  +++ V ++  +L+    + + +  L K R  L ++    ++ +++ +P +FE
Sbjct: 66  DRHVVKQNRVRFVQKLNTLLLSKPKHYIPIEILYKCRSYLCIENPLAILSMIRRYPTIFE 125

Query: 120 I-----------VEEEAFSLKFKLTEEAERLYFEELKIRNEMEGLLVTKLRKLLMMSADK 179
           +             +    L  +LT  A  L  +EL +++E+   L TKL+KLLM+S+ +
Sbjct: 126 LFTTPTPHLPMNATKPLSQLCVRLTSAASSLAMQELNLKSEISDKLATKLQKLLMLSSHR 185

Query: 180 RILLEKIAHLRTDFGLPSEFRDTICHRYPQYFRVVATESGPALELTHWDPELAVSAAELA 239
           R+LL K+ H+  DFG P  FR  +C+ YP  F+ V T  G ALEL   DPELA       
Sbjct: 186 RLLLSKLVHIAPDFGFPPNFRSRLCNDYPDKFKTVDTSYGRALELVSSDPELA------- 245

Query: 240 EEENRARELE-EKNLIIDRPLKFNRVKLPKGLKLSKNEMRKMNEFRDIPYISPYSDFSGI 299
              N+    E ++ LI+DRPLKF R+ L +GL L +     + +FR+ P + PY   S  
Sbjct: 246 ---NQMPSPEVDRGLIVDRPLKFKRLNLRRGLNLKRRHQGFLIKFRESPDVCPYKMSSDY 305

Query: 300 KAGTP-QKEKHACGVVHEILSLTLEKRTLVDHFTHFREEFRFSQQLRGMLIRHPNMFYVS 359
            A    + EK AC VV E+L LT+EKRTL+DH THFR+EF    +LR +++RHP +FYVS
Sbjct: 306 LASESIEAEKRACAVVREVLGLTVEKRTLIDHLTHFRKEFSLPNKLRDLIVRHPELFYVS 365

Query: 360 LKGDKNSVFLREAYRDS-QLIDKDRLLIIKEKFRGLVAV-----PQFKGRGAPESDTDWR 419
           +KG ++SVFL EAY D+  L+DKD  L+I+E+   L+        + + +GA   D    
Sbjct: 366 IKGMRDSVFLVEAYNDNGDLLDKDERLVIRERLIDLIQEGKRIRRERRRKGATLGDKSVE 425

Query: 420 ETNHGDDMRGEEWSDVDDD-DDEFDN--DGED 430
           E    D+   +  SD+DD+ +D F+N  D ED
Sbjct: 426 EKRKDDETIDDYDSDLDDEYEDGFENLFDSED 447

[Close]
BLAST of Cp4.1LG12g04780 vs. TAIR10
Match: AT3G63090.1 (AT3G63090.1 Ubiquitin carboxyl-terminal hydrolase family protein)

HSP 1 Score: 195.7 bits (496), Expect = 6.4e-50
Identity = 130/339 (38.35%), Postives = 191/339 (56.34%), Query Frame = 1 

Query: 51  VKWRKELPFDNVIQRDKKLKLVTRIRKILVQHHDNVMSLRGLGKFRRDLGVQEKTRLIEL 110
           V W+K+   D  I++DK+ KL  R+ K ++     V+ LR L K R  L +  K +    
Sbjct: 36  VVWKKDTRLDEAIEQDKRYKLCARVVKEVLNEPGQVIPLRYLEKRRERLRLTFKAK--SF 95

Query: 111 LKMFPAVFEI----VEEEAFSLKF-KLTEEAERLYFEELKIRNEMEGLLVTKLRKLLMMS 170
           ++M P++FEI    ++ ++  ++F + T        EE +I +E E LLV+KL +LLMM+
Sbjct: 96  VEMNPSLFEIYYDRIKPKSDPVQFLRPTPRLRAFLDEEQRIYSENEPLLVSKLCQLLMMA 155

Query: 171 ADKRILLEKIAHLRTDFGLPSEFRDTICHRYPQYFRVVAT-ESGPA-LELTHWDPELAVS 230
            DK I  +K+ H++ DFG P++F   +  +YP YFR+    E G + LEL  W+P+ A S
Sbjct: 156 KDKVISADKLVHVKRDFGFPNDFLMKLVQKYPNYFRLTGLPEEGKSFLELVSWNPDFAKS 215

Query: 231 AAELAEEENRARELEEKNLIIDRPLKFNRVKLPKGLKLSKNEMRKMNEFRDIPYISPYSD 290
             EL     RA +   K  +  RP  +N VKLP G  L K       ++ +  YISPY D
Sbjct: 216 KIEL-----RAEDETLKTGVRIRP-NYN-VKLPSGFFLRKEMREWTRDWLEQDYISPYED 275

Query: 291 FSGIKAGTPQKEKHACGVVHEILSLTLEKRTLVDHFTHFREEFRFSQQLRGMLIRHPNMF 350
            S +   + + EK   GVVHE+LSL+L KR  V     F +EFRFS     +  RH  +F
Sbjct: 276 VSHLDQASKEMEKRTVGVVHELLSLSLLKRVPVPTLGKFCDEFRFSNAFSSVFTRHSGIF 335

Query: 351 YVSLKGDKNSVFLREAYRDSQLIDKDRLLIIKEKFRGLV 383
           Y+SLKG   +  LREAY+D +L+D+D LL IK+KF  L+
Sbjct: 336 YLSLKGGIKTAVLREAYKDDELVDRDPLLAIKDKFLRLL 365

[Close]
BLAST of Cp4.1LG12g04780 vs. TAIR10
Match: AT5G21970.1 (AT5G21970.1 Ubiquitin carboxyl-terminal hydrolase family protein)

HSP 1 Score: 175.6 bits (444), Expect = 6.9e-44
Identity = 139/444 (31.31%), Postives = 216/444 (48.65%), Query Frame = 1 

Query: 6   ILPHRAYFSVKSEFWGKNLDFRNRNDSFSDNSRKSHVYFQPIRAGVKWRKELPFDNVIQR 65
           I+P R     +S F    + F   +    D SR+  V    I A  KW            
Sbjct: 22  IMPERNVLYGESSFRRVWVRFMTSSKRVQDRSREKRVQELEI-ATEKW------------ 81

Query: 66  DKKLKLVTRIRKILVQHHDNVMSLRGLGKFRRDLGVQEKTRLIELLKMFPAVFEIVEEEA 125
            K    V  + ++L    D +M++R   ++RR + + +  ++ + ++  P +FE+ +++ 
Sbjct: 82  -KIASKVIFLMEVLKGERDMIMTVRSFEQYRRQINLPKPHKISDFIRKSPKLFELYKDQR 141

Query: 126 FSLKFKLTEEAERLYFEELKIRNEMEGLLVTKLRKLLMMSADKRILLEKIAHLRTDFGLP 185
             L   LTE  E L  E  K+  E        + + LMMS DK++ L+KI H R DFGLP
Sbjct: 142 GVLWCGLTEGGEDLLDEHDKLLEENGDKAAEHVTRCLMMSVDKKLPLDKIVHFRRDFGLP 201

Query: 186 SEFRDTICHRYPQYFRVVATESGPA-LELTHWDPELAVSAAELAEEENRARELEEKN--L 245
            +FR    + +PQ+F+VV    G   LEL  W+P  A++  E  +      + E K   L
Sbjct: 202 LDFRINWVYNFPQHFKVVKLGDGEEYLELVSWNPAWAITELE-KKTLGITEDCEHKPGML 261

Query: 246 IIDRPLKFNRVKLPKGLKLSKNEMRKMNEFRDIPYISPYSDFSGIKAGTPQKEKHACGVV 305
            +  P+KF     P   K       K+  F+   Y+SPY+D  G++AG+ + +K A  V+
Sbjct: 262 SLAFPMKF-----PPSYKKMYRYRGKIEHFQKRSYLSPYADARGLEAGSKEFDKRAIAVM 321

Query: 306 HEILSLTLEKRTLVDHFTHFREEFRFSQQLRGMLIRHPNMFYVSLKGDKNSVFLREAYRD 365
           HE+LS TLEKR + DH THFR EF   Q+L  + ++H  +FYVS +G + SVFL E Y  
Sbjct: 322 HELLSFTLEKRLVTDHLTHFRREFVMPQKLMRIFLKHCGIFYVSERGKRFSVFLTEGYEG 381

Query: 366 SQLIDKDRLLIIKEK------FRGLVAVPQFKGRGAPESDTDWRETNHGDD------MRG 425
            +LI+K  L++ KEK      +RG     Q         + +  E+  GD+       + 
Sbjct: 382 PELIEKCPLILWKEKLLKFTGYRGRKRDIQTYSDTLDMEERELLESGSGDEDLSVGFEKD 441

Query: 426 EEWSDVDDDDDEFDNDGEDDWIDE 435
            ++ DV  DDDE D    +D  +E
Sbjct: 442 GDYDDVVTDDDEMDIGEVNDAYEE 445

[Close]
BLAST of Cp4.1LG12g04780 vs. TAIR10
Match: AT4G08940.1 (AT4G08940.1 Ubiquitin carboxyl-terminal hydrolase family protein)

HSP 1 Score: 168.3 bits (425), Expect = 1.1e-41
Identity = 111/322 (34.47%), Postives = 170/322 (52.80%), Query Frame = 1 

Query: 60  DNVIQRDKKLKLVTRIRKILVQHHDNVMSLRGLGKFRRDLGVQEKTRLIELLKMFPAVFE 119
           ++++ RD   + + R ++ + +  + ++ L   GK  R+LG     ++ + +   P +F+
Sbjct: 72  ESLVSRDAHFRFLIRSKEFISKQPERILRLDDAGKLYRELGFPRGRKVTKFIPKHPLIFQ 131

Query: 120 IVEEEAFSLKFKLTEEAERLYFEELKIRNEMEGLLVTKLRKLLMMSADKRILLEKIAHLR 179
                   +    TE  E L  EE  +   ME   V  +RKLLMM+ DKRILL KI H R
Sbjct: 132 TYRHSDGKIWLGFTEFMEDLLDEEKGLMESMELDRVNCVRKLLMMTKDKRILLSKIHHTR 191

Query: 180 TDFGLPSEFRDTICHRYPQYFRVVATESG-PALELTHWDPELAVSAAE--LAEEENRARE 239
             FG+P +FRD +  +YP YFRVV    G   LEL +WD  LAVS  E     +E++A+ 
Sbjct: 192 LLFGIPEDFRDRVA-KYPDYFRVVTGGDGNRVLELVNWDTNLAVSELERLFMIDEDKAK- 251

Query: 240 LEEKNLIIDRPLKFNRVKLPKGLKLSKNEMRKMNEFRDIPYISPYSDFSGIKAGTPQKEK 299
                    R  KF  VK  K L+L + + RK+N     P +SPYSD   +   + + EK
Sbjct: 252 ---------RVFKF-PVKHGKELELEEKDTRKLNLLNTFPLVSPYSDGWKLDVWSLEAEK 311

Query: 300 HACGVVHEILSLTLEKRTLVDHFTHFREEFRFSQQLRGMLIRHPNMFYVSLKGDKNSVFL 359
           +  G+VHE L+LTLEKR  + H   F++EF  ++Q   ML +    FY++      +VFL
Sbjct: 312 YRVGIVHEFLNLTLEKRASIHHIVEFKDEFSLTRQTYQMLKKQSMSFYLAGTEMNWTVFL 371

Query: 360 REAY-RDSQLIDKDRLLIIKEK 378
           ++AY  +  L+ KD  ++  EK
Sbjct: 372 KDAYDENGVLVSKDPQVVFNEK 381

[Close]
BLAST of Cp4.1LG12g04780 vs. NCBI nr
Match: gi|659123163|ref|XP_008461525.1| (PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis melo])

HSP 1 Score: 707.6 bits (1825), Expect = 1.4e-200
Identity = 382/494 (77.33%), Postives = 408/494 (82.59%), Query Frame = 1 

Query: 5   FILPHRAYFSVKSEFWGKNLDFRNRNDSFSDNSRKSHVYFQPIRAGVKWRKELPFDNVIQ 64
           FIL H++Y+SVKS+FWGKNLD RNRND    N RK+H  FQPIRA VK RKELPFDNVIQ
Sbjct: 20  FILGHKSYYSVKSQFWGKNLDLRNRND----NLRKAHDPFQPIRAVVKRRKELPFDNVIQ 79

Query: 65  RDKKLKLVTRIRKILVQHHDNVMSLRGLGKFRRDLGVQEKTRLIELLKMFPAVFEIVEEE 124
           RDKKLKLV RIRKILVQ  D VMSL+ LGKFRRDLG+++K RLI LLK FPAVFE+VEE 
Sbjct: 80  RDKKLKLVMRIRKILVQQPDRVMSLKELGKFRRDLGLEKKRRLIALLKKFPAVFEVVEEG 139

Query: 125 AFSLKFKLTEEAERLYFEELKIRNEMEGLLVTKLRKLLMMSADKRILLEKIAHLRTDFGL 184
           AFSLKFKLT EAERLY EELKIRNEMEGLLV KLRKLLMMSADKRILLEKIAHLRTDFGL
Sbjct: 140 AFSLKFKLTAEAERLYLEELKIRNEMEGLLVIKLRKLLMMSADKRILLEKIAHLRTDFGL 199

Query: 185 PSEFRDTICHRYPQYFRVVATESGPALELTHWDPELAVSAAELAEEENRARELEEKNLII 244
           P EFRDTICHRYPQYFRVVATE GPALELTHWDPELAVSAAELAEEENRARELEEKNLII
Sbjct: 200 PLEFRDTICHRYPQYFRVVATERGPALELTHWDPELAVSAAELAEEENRARELEEKNLII 259

Query: 245 DRPLKFNRVKLPKGLKLSKNEMRKMNEFRDIPYISPYSDFSGIKAGTPQKEKHACGVVHE 304
           DRPLKFNRVKLPKGL LSK+EMRK+++FRDIPYISPYSDFSGIKAGTPQKEKHACGVVHE
Sbjct: 260 DRPLKFNRVKLPKGLNLSKSEMRKISQFRDIPYISPYSDFSGIKAGTPQKEKHACGVVHE 319

Query: 305 ILSLTLEKRTLVDHFTHFREEFRFSQQLRGMLIRHPNMFYVSLKGDKNSVFLREAYRDSQ 364
           IL+LTLEKRTLVDH THFREEFRFSQQLRGMLIRHP+MFYVSLKGD++SVFLREAYRDSQ
Sbjct: 320 ILNLTLEKRTLVDHLTHFREEFRFSQQLRGMLIRHPDMFYVSLKGDRDSVFLREAYRDSQ 379

Query: 365 LIDKDRLLIIKEKFRGLVAVPQFKGRGAPESDTDWRETNHGDDMRGEEWSDV----DDDD 424
           LIDKDRLLIIKEK R LVAVP+F+ RGA   DT   +TN   DM GEEWSDV    DDDD
Sbjct: 380 LIDKDRLLIIKEKLRALVAVPRFRSRGASNGDTKGGDTNQPSDMSGEEWSDVDNLLDDDD 439

Query: 425 DEFDNDG---------EDDWIDE------------------------QINNLEMADQRLL 462
           DEFD+D          EDDW DE                        Q+N+L+   Q  L
Sbjct: 440 DEFDDDEFDDDNNEAFEDDWSDEDDTPPSFNGDQDGESINIGSRKQKQVNDLQKVGQSRL 499

[Close]
BLAST of Cp4.1LG12g04780 vs. NCBI nr
Match: gi|449443941|ref|XP_004139734.1| (PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis sativus])

HSP 1 Score: 686.4 bits (1770), Expect = 3.4e-194
Identity = 369/494 (74.70%), Postives = 403/494 (81.58%), Query Frame = 1 

Query: 5   FILPHRAYFSVKSEFWGKNLDFRNRNDSFSDNSRKSHVYFQPIRAGVKWRKELPFDNVIQ 64
           FIL H++Y+SVKS+FWGKNLD RNRND    N RKSHV FQPIRA VK RKELPFDNVIQ
Sbjct: 20  FILGHKSYYSVKSQFWGKNLDLRNRND----NLRKSHVPFQPIRAVVKRRKELPFDNVIQ 79

Query: 65  RDKKLKLVTRIRKILVQHHDNVMSLRGLGKFRRDLGVQEKTRLIELLKMFPAVFEIVEEE 124
           +DKKLKL  RIRKILVQ  D VMSL+ LG+FR+DLG++ K R+I LLK FPAVFE+VEE 
Sbjct: 80  KDKKLKLALRIRKILVQQPDRVMSLKDLGRFRKDLGLERKRRIIALLKKFPAVFEVVEEG 139

Query: 125 AFSLKFKLTEEAERLYFEELKIRNEMEGLLVTKLRKLLMMSADKRILLEKIAHLRTDFGL 184
           AF+LKFKLT EAERLY EELKIRNEMEGLLV KLRKLLMMSADKRILLEKIAHLRTD GL
Sbjct: 140 AFALKFKLTAEAERLYLEELKIRNEMEGLLVIKLRKLLMMSADKRILLEKIAHLRTDLGL 199

Query: 185 PSEFRDTICHRYPQYFRVVATESGPALELTHWDPELAVSAAELAEEENRARELEEKNLII 244
           P EFRDTICHRYPQYFRVVAT+ GPALELTHWDPELAVSAAELAEEENRARELEEKNLII
Sbjct: 200 PLEFRDTICHRYPQYFRVVATKRGPALELTHWDPELAVSAAELAEEENRARELEEKNLII 259

Query: 245 DRPLKFNRVKLPKGLKLSKNEMRKMNEFRDIPYISPYSDFSGIKAGTPQKEKHACGVVHE 304
           DRPLKFNRVKLPKGL LSK EMRK+++FRDIPYISPYSDFSG+KAGTP KEKHAC VVHE
Sbjct: 260 DRPLKFNRVKLPKGLNLSKGEMRKISQFRDIPYISPYSDFSGLKAGTPPKEKHACAVVHE 319

Query: 305 ILSLTLEKRTLVDHFTHFREEFRFSQQLRGMLIRHPNMFYVSLKGDKNSVFLREAYRDSQ 364
           IL+LTLEKRTLVDH THFREEFRFSQQLRGMLIRHP+MFYVSLKGD++SVFLREAYR SQ
Sbjct: 320 ILNLTLEKRTLVDHLTHFREEFRFSQQLRGMLIRHPDMFYVSLKGDRDSVFLREAYRGSQ 379

Query: 365 LIDKDRLLIIKEKFRGLVAVPQFKGRGAPESDTDWRETNHGDDMRGEEWSDVDD------ 424
           LIDKDRLLIIKEK R LV VP+ +GRGA  SDT   +T+  +DM GEEWSDVDD      
Sbjct: 380 LIDKDRLLIIKEKLRVLVTVPRLRGRGASNSDTKGGDTDQPNDMSGEEWSDVDDLLDDDD 439

Query: 425 ---DDDEFDNDG----EDDWIDE------------------------QINNLEMADQRLL 462
              DDDEFD+D     EDDW DE                        Q+N+L+  DQ  L
Sbjct: 440 DEFDDDEFDDDNNGAFEDDWNDEDDTPPSFDGDEDGESINIGSRKQKQVNDLQKVDQSPL 499

[Close]
BLAST of Cp4.1LG12g04780 vs. NCBI nr
Match: gi|802694676|ref|XP_012083234.1| (PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas])

HSP 1 Score: 622.1 bits (1603), Expect = 7.9e-175
Identity = 332/486 (68.31%), Postives = 386/486 (79.42%), Query Frame = 1 

Query: 16  KSEFWGKNLDFRNRNDSFSDNSRKSHVYFQPIRAGVKWRKELPFDNVIQRDKKLKLVTRI 75
           +S FWGK+L F+ +   F    RK+HV FQP+RA VK RKELPFDNVIQRDKKLKLV +I
Sbjct: 47  RSHFWGKSLVFQEKIGPFGRTLRKTHVPFQPVRAVVKRRKELPFDNVIQRDKKLKLVLKI 106

Query: 76  RKILVQHHDNVMSLRGLGKFRRDLGVQEKTRLIELLKMFPAVFEIVEEEAFSLKFKLTEE 135
           RKILV   D +M LR LG+FRR+LGV+++ R I LLK FPAVF+IV+E AFSLKFKLT E
Sbjct: 107 RKILVNQPDRIMELRQLGRFRRELGVKKQRRFIALLKKFPAVFDIVQEGAFSLKFKLTPE 166

Query: 136 AERLYFEELKIRNEMEGLLVTKLRKLLMMSADKRILLEKIAHLRTDFGLPSEFRDTICHR 195
           AERLY EELK+RNEME LLV KLRKLLMMS +KRILLEKIAHL+TDFGLP+EFRDTICHR
Sbjct: 167 AERLYLEELKVRNEMEDLLVVKLRKLLMMSLEKRILLEKIAHLKTDFGLPTEFRDTICHR 226

Query: 196 YPQYFRVVATESGPALELTHWDPELAVSAAELAEEENRARELEEKNLIIDRPLKFNRVKL 255
           YPQYFRVVATE GPALELTHWDPELAVSAAEL+EEENRARELEE++LIIDRP KFNRVKL
Sbjct: 227 YPQYFRVVATERGPALELTHWDPELAVSAAELSEEENRARELEERDLIIDRPPKFNRVKL 286

Query: 256 PKGLKLSKNEMRKMNEFRDIPYISPYSDFSGIKAGTPQKEKHACGVVHEILSLTLEKRTL 315
           PKGL+LSK+EMR +++FRD+PYISPYSDFS +++GTP+KEKHACGVVHEILSLT+EKRTL
Sbjct: 287 PKGLQLSKSEMRNISKFRDMPYISPYSDFSHLRSGTPEKEKHACGVVHEILSLTVEKRTL 346

Query: 316 VDHFTHFREEFRFSQQLRGMLIRHPNMFYVSLKGDKNSVFLREAYRDSQLIDKDRLLIIK 375
           VDH THFREEFRFSQQ+RGMLIRHP+MFYVSLKGD++SVFLREAYRDS L+DKDRLL+IK
Sbjct: 347 VDHLTHFREEFRFSQQVRGMLIRHPDMFYVSLKGDRDSVFLREAYRDSHLVDKDRLLLIK 406

Query: 376 EKFRGLVAVPQFKGRGAP-----------ESDTDWRETNHGDDMRGEEWSDV-------- 435
           EKFR LV VP+F  RGAP           E+ TD  E   G+++  E+WSD+        
Sbjct: 407 EKFRALVNVPRFPRRGAPSNGAPSRGAERENGTDELEDGSGEEV--EDWSDIDSYMAGDG 466

Query: 436 -DDDDDEFDNDGEDDWIDE------------------QINNLEMA--DQRLLSPPALPDG 462
            DDDDD+  ND EDDW DE                   IN+ + +  ++  +  PA PDG
Sbjct: 467 LDDDDDDDGNDYEDDWSDEDDDTPPDFDENVKIHLSKSINHSDKSTKNEEKVPEPAFPDG 526

[Close]
BLAST of Cp4.1LG12g04780 vs. NCBI nr
Match: gi|703096240|ref|XP_010095786.1| (hypothetical protein L484_017593 [Morus notabilis])

HSP 1 Score: 612.5 bits (1578), Expect = 6.2e-172
Identity = 334/488 (68.44%), Postives = 377/488 (77.25%), Query Frame = 1 

Query: 11  AYFSVKSEFWGKNLDFRNRNDSFSDNSRKSHVYFQPIRAGVKWRKELPFDNVIQRDKKLK 70
           ++FS KS+F GK+L  + R + F ++ RK+H  F PIRA VK RKE+PFDNVIQRDKKLK
Sbjct: 39  SHFS-KSQFLGKSLVLQVRRNGFLNSPRKTHFPFGPIRAAVKRRKEIPFDNVIQRDKKLK 98

Query: 71  LVTRIRKILVQHHDNVMSLRGLGKFRRDLGVQEKTRLIELLKMFPAVFEIVEEEAFSLKF 130
           LV +IRKILV   D +MSL+ LG++RRDLG+Q+K R I LLK FPAVFEIVEE  FSLKF
Sbjct: 99  LVLKIRKILVGQPDRIMSLKDLGRYRRDLGLQKKRRFIALLKKFPAVFEIVEEGVFSLKF 158

Query: 131 KLTEEAERLYFEELKIRNEMEGLLVTKLRKLLMMSADKRILLEKIAHLRTDFGLPSEFRD 190
           KLT EAERLYFEELK++NEME LLV KLRKLLMMS +KRILLEKIAHL+TD GLP EFRD
Sbjct: 159 KLTPEAERLYFEELKVKNEMEDLLVVKLRKLLMMSMEKRILLEKIAHLKTDLGLPVEFRD 218

Query: 191 TICHRYPQYFRVVATESGPALELTHWDPELAVSAAELAEEENRARELEEKNLIIDRPLKF 250
           TICHRYPQYFRVVAT  GPALELTHWDPELAVSAAEL EEENRARELEEKNLIIDRPLKF
Sbjct: 219 TICHRYPQYFRVVATGRGPALELTHWDPELAVSAAELHEEENRARELEEKNLIIDRPLKF 278

Query: 251 NRVKLPKGLKLSKNEMRKMNEFRDIPYISPYSDFSGIKAGTPQKEKHACGVVHEILSLTL 310
           NRVKLPKGL LSK EMRK+++FRD+PYISPYSDFSG++ GT +KEKHACGVVHEILSLTL
Sbjct: 279 NRVKLPKGLVLSKGEMRKISQFRDLPYISPYSDFSGLRQGTMEKEKHACGVVHEILSLTL 338

Query: 311 EKRTLVDHFTHFREEFRFSQQLRGMLIRHPNMFYVSLKGDKNSVFLREAYRDSQLIDKDR 370
           EKRTLVDH THFREEFRFSQQLRGMLIRHP+M YVSLKGD++SVFLREAYRDSQL+DKDR
Sbjct: 339 EKRTLVDHLTHFREEFRFSQQLRGMLIRHPDMLYVSLKGDRDSVFLREAYRDSQLVDKDR 398

Query: 371 LLIIKEKFRGLVAVPQFKGRGAPESDTD----WRETNHGDDMRGEEWSDVDD--DDDEF- 430
           L IIKEK   LVAVP+F  RGAP+   D      ET  G    GE WS++DD   D  F 
Sbjct: 399 LTIIKEKLHSLVAVPRFLKRGAPQRTADVAEESNETEDGTGEIGEGWSNIDDFMGDSGFD 458

Query: 431 -DNDGEDDWIDE-----------------------------QINNLEMADQRLLSPPALP 462
            D+DGEDDW ++                             Q       D++ +  P LP
Sbjct: 459 DDDDGEDDWSEDDWSEDDDETPPDFDDDGDTMSIGVGNSSKQETKSRRRDEKKVLVPVLP 518

[Close]
BLAST of Cp4.1LG12g04780 vs. NCBI nr
Match: gi|147856413|emb|CAN82500.1| (hypothetical protein VITISV_004914 [Vitis vinifera])

HSP 1 Score: 610.1 bits (1572), Expect = 3.1e-171
Identity = 329/482 (68.26%), Postives = 375/482 (77.80%), Query Frame = 1 

Query: 16  KSEFWGKNLDFRNRNDSFSDNSRKSHVYFQPIRAGVKWRKELPFDNVIQRDKKLKLVTRI 75
           K+ F G +L  R R D    N RK+HV   PIRA VK RKELPFDNV+QRDKKLKLV +I
Sbjct: 49  KTPFLGGSLVLRERVDCLR-NLRKTHVPVGPIRAAVKRRKELPFDNVVQRDKKLKLVLKI 108

Query: 76  RKILVQHHDNVMSLRGLGKFRRDLGVQEKTRLIELLKMFPAVFEIVEEEAFSLKFKLTEE 135
           RK+LV   D VMSLR LGK+RR+LG+ +K R I LLK FPA+FEIVEE  +SLKFKLT E
Sbjct: 109 RKLLVSQPDRVMSLRQLGKYRRELGLTKKRRFIALLKKFPAIFEIVEEGVYSLKFKLTPE 168

Query: 136 AERLYFEELKIRNEMEGLLVTKLRKLLMMSADKRILLEKIAHLRTDFGLPSEFRDTICHR 195
           AERLY EELKIRNEME LLV KLRKLLMMS +KRILLEKIAHL+TD GLPSEFRDTIC R
Sbjct: 169 AERLYLEELKIRNEMEDLLVVKLRKLLMMSMEKRILLEKIAHLKTDLGLPSEFRDTICQR 228

Query: 196 YPQYFRVVATESGPALELTHWDPELAVSAAELAEEENRARELEEKNLIIDRPLKFNRVKL 255
           YPQYF+VV TE GPALELTHWDPELAVSAAE+ EEE R RELEE++LIIDRP KFNRVKL
Sbjct: 229 YPQYFKVVQTERGPALELTHWDPELAVSAAEIWEEEKRVRELEERDLIIDRPPKFNRVKL 288

Query: 256 PKGLKLSKNEMRKMNEFRDIPYISPYSDFSGIKAGTPQKEKHACGVVHEILSLTLEKRTL 315
           PKGL LSK EMR+++ FRD+PYISPYSDFSG+++G+P+KEKHACGVVHE+LSLT+EKRTL
Sbjct: 289 PKGLSLSKGEMRRLSRFRDMPYISPYSDFSGLRSGSPEKEKHACGVVHEMLSLTVEKRTL 348

Query: 316 VDHFTHFREEFRFSQQLRGMLIRHPNMFYVSLKGDKNSVFLREAYRDSQLIDKDRLLIIK 375
           VDH THFREEFRFSQQLRGMLIRHP+MFYVSLKGD++SVFLREAY DSQLI+KDRLL+IK
Sbjct: 349 VDHLTHFREEFRFSQQLRGMLIRHPDMFYVSLKGDRDSVFLREAYSDSQLIEKDRLLVIK 408

Query: 376 EKFRGLVAVPQFKGRGAPESDTD----WRETNHGDDMRGEEWSDV--------DDDDDEF 435
           EK R LV+VP+F+ RGAP SD D      E  HG    GEEWSDV        DDDDD+ 
Sbjct: 409 EKLRALVSVPRFRRRGAPRSDADVVEGTDEQEHGSGEEGEEWSDVDNLMGDGLDDDDDDD 468

Query: 436 DNDGEDDWIDE------------------------QINNLEMADQRLLSPPALPDGRPQE 462
           D+D EDDW DE                        Q++NL   ++++L  P  PDGRP+E
Sbjct: 469 DDDEEDDWSDEDDNTPPDFDEDDGTMKFELNKEVKQVDNLGKDEEKVL-VPMFPDGRPRE 528

The following BLAST results are available for this feature:
BLAST of Cp4.1LG12g04780 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RPD1_ARATH1.9e-3530.48Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Arabidopsis thaliana GN=RPD1 PE=1 SV=1[more]
BLAST of Cp4.1LG12g04780 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A067K891_JATCU5.5e-17568.31Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14276 PE=4 SV=1[more]
W9RAG9_9ROSA4.3e-17268.44Uncharacterized protein OS=Morus notabilis GN=L484_017593 PE=4 SV=1[more]
F6I6B4_VITVI2.2e-17168.26Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0046g01070 PE=4 SV=... [more]
A5AR37_VITVI2.2e-17168.26Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_004914 PE=4 SV=1[more]
A0A0A0K9R9_CUCSA6.3e-17184.97Uncharacterized protein OS=Cucumis sativus GN=Csa_7G327750 PE=4 SV=1[more]
BLAST of Cp4.1LG12g04780 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G01037.17.9e-15760.16 Ubiquitin carboxyl-terminal hydrolase family protein[more]
AT5G62990.14.9e-5835.97 Ubiquitin carboxyl-terminal hydrolase family protein[more]
AT3G63090.16.4e-5038.35 Ubiquitin carboxyl-terminal hydrolase family protein[more]
AT5G21970.16.9e-4431.31 Ubiquitin carboxyl-terminal hydrolase family protein[more]
AT4G08940.11.1e-4134.47 Ubiquitin carboxyl-terminal hydrolase family protein[more]
BLAST of Cp4.1LG12g04780 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659123163|ref|XP_008461525.1|1.4e-20077.33PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis melo][more]
gi|449443941|ref|XP_004139734.1|3.4e-19474.70PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis sativus][more]
gi|802694676|ref|XP_012083234.1|7.9e-17568.31PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas][more]
gi|703096240|ref|XP_010095786.1|6.2e-17268.44hypothetical protein L484_017593 [Morus notabilis][more]
gi|147856413|emb|CAN82500.1|3.1e-17168.26hypothetical protein VITISV_004914 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR021099PORR_domain
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
biological_process GO:0008150 biological_process
biological_process GO:0000373 Group II intron splicing
biological_process GO:0015979 photosynthesis
cellular_component GO:0005575 cellular_component
cellular_component GO:0009507 chloroplast
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0003674 molecular_function
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG12g04780.1Cp4.1LG12g04780.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021099Plant organelle RNA recognition domainPFAMPF11955PORRcoord: 55..383
score: 2.2E
NoneNo IPR availableunknownCoilCoilcoord: 220..240
scor
NoneNo IPR availablePANTHERPTHR31476FAMILY NOT NAMEDcoord: 16..445
score: 1.7E
NoneNo IPR availablePANTHERPTHR31476:SF4RNA RECOGNITION DOMAIN-CONTAINING PROTEIN WTF1coord: 16..445
score: 1.7E