Cp4.1LG12g04530 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG12g04530
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG12 : 4053754 .. 4054163 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TCATCCACTCGCAAAAAGAAGCATTGGAAAGGCAGAAGAAAAAGCATAAAATAAAATAAAATAAAATGGCGAAGAAGATGATTGCAGTGTTGTTGGTGTGCGTTGTGGTGGTGGCTGCATTGCAGGCTTCGAGTGCCACTGAAAGCGCGAAGGAGGCCAAATATGAGGCTAAATTTGAAGCCAAGTATAGGTTATGCTACGAAAAATGCGAGAAGGAATGCCTTGAAAAGGGCAATGGCCAAAGCTTCTGCGAAGTTAAGTGCGATGAAGATTGTGATGAGAAAGAAGCCGCTGGTATGCTCTTTTCCTTTTTAAATCATTTTTATTTTCTCTTAATAATTAATTGATTGATTGATTATTGTATTTGTATTTGTTTCACAGATAAGCTACACATCAAAGTGAAGAACTGA

mRNA sequence

TCATCCACTCGCAAAAAGAAGCATTGGAAAGGCAGAAGAAAAAGCATAAAATAAAATAAAATAAAATGGCGAAGAAGATGATTGCAGTGTTGTTGGTGTGCGTTGTGGTGGTGGCTGCATTGCAGGCTTCGAGTGCCACTGAAAGCGCGAAGGAGGCCAAATATGAGGCTAAATTTGAAGCCAAGTATAGGTTATGCTACGAAAAATGCGAGAAGGAATGCCTTGAAAAGGGCAATGGCCAAAGCTTCTGCGAAGTTAAGTGCGATGAAGATTGTGATGAGAAAGAAGCCGCTGATAAGCTACACATCAAAGTGAAGAACTGA

Coding sequence (CDS)

ATGGCGAAGAAGATGATTGCAGTGTTGTTGGTGTGCGTTGTGGTGGTGGCTGCATTGCAGGCTTCGAGTGCCACTGAAAGCGCGAAGGAGGCCAAATATGAGGCTAAATTTGAAGCCAAGTATAGGTTATGCTACGAAAAATGCGAGAAGGAATGCCTTGAAAAGGGCAATGGCCAAAGCTTCTGCGAAGTTAAGTGCGATGAAGATTGTGATGAGAAAGAAGCCGCTGATAAGCTACACATCAAAGTGAAGAACTGA

Protein sequence

MAKKMIAVLLVCVVVVAALQASSATESAKEAKYEAKFEAKYRLCYEKCEKECLEKGNGQSFCEVKCDEDCDEKEAADKLHIKVKN
Homology
[Close]
BLAST of Cp4.1LG12g04530 vs. Swiss-Prot
Match: ALL6_OLEEU (Major pollen allergen Ole e 6 OS=Olea europaea GN=OLE6 PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 8.9e-08
Identity = 26/49 (53.06%), Postives = 36/49 (73.47%), Query Frame = 1 

Query: 38 EAKYRLCYEKCEKECLEKGNGQSFCEVKCDEDCDEKEAADKL-HIKVKN 86
          EA+++ CY+ C KEC +KGNG +FCE+KCD DC  K+  +KL + K KN
Sbjct: 2  EAQFKECYDTCHKECSDKGNGFTFCEMKCDTDCSVKDVKEKLENYKPKN 50

[Close]
BLAST of Cp4.1LG12g04530 vs. TrEMBL
Match: A0A0A0KPA7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G222980 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 3.4e-22
Identity = 58/83 (69.88%), Postives = 71/83 (85.54%), Query Frame = 1 

Query: 1  MAKKMIAVLLVCVVVVAALQASSATESAKEAKYEAKFEAKYRLCYEKCEKECLEKGNGQS 60
          MA KMIA+ L+C+VVVAALQ ++A +    AKYEAKF+AKY+ C+E CEKECL  G+GQS
Sbjct: 1  MANKMIALFLMCIVVVAALQFANANKE-DVAKYEAKFDAKYKSCFETCEKECLRYGSGQS 60

Query: 61 FCEVKCDEDCDEKEAADKLHIKV 84
          +CEVKCDEDCDEKEAADKLHI++
Sbjct: 61 YCEVKCDEDCDEKEAADKLHIEL 82

[Close]
BLAST of Cp4.1LG12g04530 vs. TrEMBL
Match: A0A0A0KCI6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G106710 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 3.4e-22
Identity = 58/84 (69.05%), Postives = 67/84 (79.76%), Query Frame = 1 

Query: 3  KKMIAVLLVCVVVVAALQASSATESAKEAKYEAKFEAKYRLCYEKCEKECLEKG-NGQSF 62
          KKM+ VLL+C+VV+AAL+ S      KE KYE+KF+AKY+ CYE CEKECLE G NGQSF
Sbjct: 4  KKMMGVLLICIVVMAALEFSIVNGEEKEDKYESKFDAKYKTCYESCEKECLENGNNGQSF 63

Query: 63 CEVKCDEDCDEKEAADKLHIKVKN 86
          CEVKCDEDC EKE+ADKLHI   N
Sbjct: 64 CEVKCDEDCGEKESADKLHINPAN 87

[Close]
BLAST of Cp4.1LG12g04530 vs. TrEMBL
Match: A0A0A0KFH6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G102480 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 7.6e-22
Identity = 55/84 (65.48%), Postives = 68/84 (80.95%), Query Frame = 1 

Query: 1  MAKKMIAVLLVCVVVVAALQASSATESAKEAKYEAKFEAKYRLCYEKCEKECLEKG-NGQ 60
          MAKKM+ VLL+C+V++A L+ S      KE KYE+KF+A+Y+ CYE CEKECL  G NGQ
Sbjct: 1  MAKKMMGVLLICIVIMAVLEFSIVNGEEKEDKYESKFDARYKSCYESCEKECLTNGKNGQ 60

Query: 61 SFCEVKCDEDCDEKEAADKLHIKV 84
          S+CEVKCDEDCDEKE ADKLH++V
Sbjct: 61 SYCEVKCDEDCDEKEVADKLHVEV 84

[Close]
BLAST of Cp4.1LG12g04530 vs. TrEMBL
Match: A0A0A0K9Z9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G106720 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 4.9e-21
Identity = 58/84 (69.05%), Postives = 66/84 (78.57%), Query Frame = 1 

Query: 1  MAKKMIAVLLVCVVVVAALQASSATESAKEAKYEAKFEAKYRLCYEKCEKECLEKG-NGQ 60
          MAKKM+AV L+C+VVVA LQ   A E     KYEAKF+AKY+ CYE CEKECL    NG+
Sbjct: 1  MAKKMMAVFLMCIVVVATLQFVMANEEDGVTKYEAKFDAKYKSCYETCEKECLRNDTNGE 60

Query: 61 SFCEVKCDEDCDEKEAADKLHIKV 84
          SFCEVKCDEDC EKEAADKLHI++
Sbjct: 61 SFCEVKCDEDCSEKEAADKLHIEL 84

[Close]
BLAST of Cp4.1LG12g04530 vs. TrEMBL
Match: A0A0A0KDP7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G102490 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.9e-20
Identity = 52/81 (64.20%), Postives = 67/81 (82.72%), Query Frame = 1 

Query: 1  MAKKMIAVLLVCVVVVAALQASSATESAKEAKYEAKFEAKYRLCYEKCEKECLEKGNGQS 60
          MAKKM+AV L+C+VVV +LQ ++A +  + A YEAKF+AKY+ C+  CEKEC+E+G+G S
Sbjct: 1  MAKKMMAVFLMCIVVVTSLQFATANKEYEVASYEAKFDAKYKACFVTCEKECIERGSGHS 60

Query: 61 FCEVKCDEDCDEKEAADKLHI 82
          +CEVKCDEDC  KEAADKLHI
Sbjct: 61 YCEVKCDEDCGAKEAADKLHI 81

[Close]
BLAST of Cp4.1LG12g04530 vs. NCBI nr
Match: gi|659114221|ref|XP_008456958.1| (PREDICTED: major pollen allergen Ole e 6-like [Cucumis melo])

HSP 1 Score: 117.1 bits (292), Expect = 1.5e-23
Identity = 58/83 (69.88%), Postives = 73/83 (87.95%), Query Frame = 1 

Query: 1  MAKKMIAVLLVCVVVVAALQASSATESAKEAKYEAKFEAKYRLCYEKCEKECLEKGNGQS 60
          MAKKMIA+ L+C+VVVAALQ +SA +  + AKYEAKF+AKY+ C++ CEKECLE G+GQS
Sbjct: 1  MAKKMIALFLMCIVVVAALQFASANKEDEVAKYEAKFDAKYKSCFKTCEKECLENGSGQS 60

Query: 61 FCEVKCDEDCDEKEAADKLHIKV 84
          +CEVKCDEDC+EKE ADKLHI++
Sbjct: 61 YCEVKCDEDCNEKEVADKLHIEL 83

[Close]
BLAST of Cp4.1LG12g04530 vs. NCBI nr
Match: gi|449457470|ref|XP_004146471.1| (PREDICTED: major pollen allergen Ole e 6-like [Cucumis sativus])

HSP 1 Score: 112.1 bits (279), Expect = 4.9e-22
Identity = 58/83 (69.88%), Postives = 71/83 (85.54%), Query Frame = 1 

Query: 1  MAKKMIAVLLVCVVVVAALQASSATESAKEAKYEAKFEAKYRLCYEKCEKECLEKGNGQS 60
          MA KMIA+ L+C+VVVAALQ ++A +    AKYEAKF+AKY+ C+E CEKECL  G+GQS
Sbjct: 1  MANKMIALFLMCIVVVAALQFANANKE-DVAKYEAKFDAKYKSCFETCEKECLRYGSGQS 60

Query: 61 FCEVKCDEDCDEKEAADKLHIKV 84
          +CEVKCDEDCDEKEAADKLHI++
Sbjct: 61 YCEVKCDEDCDEKEAADKLHIEL 82

[Close]
BLAST of Cp4.1LG12g04530 vs. NCBI nr
Match: gi|700191315|gb|KGN46519.1| (hypothetical protein Csa_6G106710 [Cucumis sativus])

HSP 1 Score: 112.1 bits (279), Expect = 4.9e-22
Identity = 58/84 (69.05%), Postives = 67/84 (79.76%), Query Frame = 1 

Query: 3  KKMIAVLLVCVVVVAALQASSATESAKEAKYEAKFEAKYRLCYEKCEKECLEKG-NGQSF 62
          KKM+ VLL+C+VV+AAL+ S      KE KYE+KF+AKY+ CYE CEKECLE G NGQSF
Sbjct: 4  KKMMGVLLICIVVMAALEFSIVNGEEKEDKYESKFDAKYKTCYESCEKECLENGNNGQSF 63

Query: 63 CEVKCDEDCDEKEAADKLHIKVKN 86
          CEVKCDEDC EKE+ADKLHI   N
Sbjct: 64 CEVKCDEDCGEKESADKLHINPAN 87

[Close]
BLAST of Cp4.1LG12g04530 vs. NCBI nr
Match: gi|700191282|gb|KGN46486.1| (hypothetical protein Csa_6G102480 [Cucumis sativus])

HSP 1 Score: 110.9 bits (276), Expect = 1.1e-21
Identity = 55/84 (65.48%), Postives = 68/84 (80.95%), Query Frame = 1 

Query: 1  MAKKMIAVLLVCVVVVAALQASSATESAKEAKYEAKFEAKYRLCYEKCEKECLEKG-NGQ 60
          MAKKM+ VLL+C+V++A L+ S      KE KYE+KF+A+Y+ CYE CEKECL  G NGQ
Sbjct: 1  MAKKMMGVLLICIVIMAVLEFSIVNGEEKEDKYESKFDARYKSCYESCEKECLTNGKNGQ 60

Query: 61 SFCEVKCDEDCDEKEAADKLHIKV 84
          S+CEVKCDEDCDEKE ADKLH++V
Sbjct: 61 SYCEVKCDEDCDEKEVADKLHVEV 84

[Close]
BLAST of Cp4.1LG12g04530 vs. NCBI nr
Match: gi|700191316|gb|KGN46520.1| (hypothetical protein Csa_6G106720 [Cucumis sativus])

HSP 1 Score: 108.2 bits (269), Expect = 7.0e-21
Identity = 58/84 (69.05%), Postives = 66/84 (78.57%), Query Frame = 1 

Query: 1  MAKKMIAVLLVCVVVVAALQASSATESAKEAKYEAKFEAKYRLCYEKCEKECLEKG-NGQ 60
          MAKKM+AV L+C+VVVA LQ   A E     KYEAKF+AKY+ CYE CEKECL    NG+
Sbjct: 1  MAKKMMAVFLMCIVVVATLQFVMANEEDGVTKYEAKFDAKYKSCYETCEKECLRNDTNGE 60

Query: 61 SFCEVKCDEDCDEKEAADKLHIKV 84
          SFCEVKCDEDC EKEAADKLHI++
Sbjct: 61 SFCEVKCDEDCSEKEAADKLHIEL 84

The following BLAST results are available for this feature:
BLAST of Cp4.1LG12g04530 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ALL6_OLEEU8.9e-0853.06Major pollen allergen Ole e 6 OS=Olea europaea GN=OLE6 PE=1 SV=1[more]
BLAST of Cp4.1LG12g04530 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KPA7_CUCSA3.4e-2269.88Uncharacterized protein OS=Cucumis sativus GN=Csa_5G222980 PE=4 SV=1[more]
A0A0A0KCI6_CUCSA3.4e-2269.05Uncharacterized protein OS=Cucumis sativus GN=Csa_6G106710 PE=4 SV=1[more]
A0A0A0KFH6_CUCSA7.6e-2265.48Uncharacterized protein OS=Cucumis sativus GN=Csa_6G102480 PE=4 SV=1[more]
A0A0A0K9Z9_CUCSA4.9e-2169.05Uncharacterized protein OS=Cucumis sativus GN=Csa_6G106720 PE=4 SV=1[more]
A0A0A0KDP7_CUCSA1.9e-2064.20Uncharacterized protein OS=Cucumis sativus GN=Csa_6G102490 PE=4 SV=1[more]
BLAST of Cp4.1LG12g04530 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG12g04530 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659114221|ref|XP_008456958.1|1.5e-2369.88PREDICTED: major pollen allergen Ole e 6-like [Cucumis melo][more]
gi|449457470|ref|XP_004146471.1|4.9e-2269.88PREDICTED: major pollen allergen Ole e 6-like [Cucumis sativus][more]
gi|700191315|gb|KGN46519.1|4.9e-2269.05hypothetical protein Csa_6G106710 [Cucumis sativus][more]
gi|700191282|gb|KGN46486.1|1.1e-2165.48hypothetical protein Csa_6G102480 [Cucumis sativus][more]
gi|700191316|gb|KGN46520.1|7.0e-2169.05hypothetical protein Csa_6G106720 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR015333Pollen_allergen_ole-e-6
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG12g04530.1Cp4.1LG12g04530.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015333Pollen allergen ole e 6GENE3DG3DSA:1.10.287.720coord: 39..81
score: 1.5
IPR015333Pollen allergen ole e 6PFAMPF09253Ole-e-6coord: 44..80
score: 5.3
IPR015333Pollen allergen ole e 6unknownSSF111388Pollen allergen ole e 6coord: 38..79
score: 1.96
NoneNo IPR availablePANTHERPTHR35632FAMILY NOT NAMEDcoord: 1..85
score: 2.5
NoneNo IPR availablePANTHERPTHR35632:SF1SUBFAMILY NOT NAMEDcoord: 1..85
score: 2.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG12g04530CmoCh17G005070Cucurbita moschata (Rifu)cmocpeB335
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG12g04530Cucurbita pepo (Zucchini)cpecpeB163
Cp4.1LG12g04530Cucurbita maxima (Rimu)cmacpeB371
Cp4.1LG12g04530Cucurbita maxima (Rimu)cmacpeB898
Cp4.1LG12g04530Cucurbita maxima (Rimu)cmacpeB906
Cp4.1LG12g04530Cucurbita moschata (Rifu)cmocpeB836
Cp4.1LG12g04530Cucurbita moschata (Rifu)cmocpeB842
Cp4.1LG12g04530Wild cucumber (PI 183967)cpecpiB151
Cp4.1LG12g04530Cucumber (Chinese Long) v2cpecuB149
Cp4.1LG12g04530Bottle gourd (USVL1VR-Ls)cpelsiB101
Cp4.1LG12g04530Watermelon (Charleston Gray)cpewcgB144
Cp4.1LG12g04530Watermelon (97103) v1cpewmB155
Cp4.1LG12g04530Melon (DHL92) v3.5.1cpemeB112
Cp4.1LG12g04530Cucumber (Gy14) v2cgybcpeB729
Cp4.1LG12g04530Cucumber (Gy14) v2cgybcpeB732
Cp4.1LG12g04530Melon (DHL92) v3.6.1cpemedB138
Cp4.1LG12g04530Silver-seed gourdcarcpeB0117
Cp4.1LG12g04530Cucumber (Chinese Long) v3cpecucB0173
Cp4.1LG12g04530Wax gourdcpewgoB0174