Cp4.1LG12g04290 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG12g04290
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG12 : 3226324 .. 3227572 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCTTCTTCATACTAGACCAAACCCATGAGCTAGCCGAAGCACTGTACGTAATCGCCAGCGTTACTGACATAGCCTATCTCAAATTCTCAATGGAAAAAATGTCCATAATGGGCAGTGCCTCACCAGAAACTGATTGCATCATAGCAATACAACTCTGCCCTCCATACTTCCAAAATTATACCTGCAACCATCTTCATTATTCATGGATTAACATCCACAAAATCTTCCCTCTCATGTCCGATCTCAACCGAGCCGGCTTCTCTTCCTTGTCCTTCTCTTTTACAGCCCCGAATCTTGCCAACCTCGTATTCGAGGGCCCATCCCGTTTACGTGAAGCCGATTTCGAGTTAAATCCGACCAATGGTTCGAGGGATATCGGGCCATATGACTACTCAACTTTTGTCACCTTGGAATCAAAAGAGTTCATAAACATAATCACAGACTTTGAATTTTATCGTTATGGTAATACCCCCTTTAATCAAAAGATACACATTTTATGTTGCTAACATGTTCTTGAATTTCTTCATGTTTGTGGCAGTTCTTGTTACTCTCACGAGCTCGCAAGTCAAATTCTCGTACACGAGGTTTCAGACTATTATTACTCGTGAGGTATTATTATTTGTTGAGGATTGTTAGGAAATGATCATGGGTTTACAAGTCGTTATTAAAATTTGGAATTTATTGCATGTAGAGTGGCCGATGCGTTATTGGAGGTATTGAAGAATCGGGTTTGATTAAATATATAATCACTCTTCATCCAATGCATACTTTCTGCAATTTGGTTCGTCAAACTGAAAGGGTATGGCTATTCAAGTCCGATGAAGCTGCCAAAGGTGTAATTGCTGCCCCTCTAGGACTGCATGCTCGATTTGTGACCTATTTTCCTGATGATTGGAAAGAATGAAATGGGAAAGTTTGTGTAGCCTTACAAAACTATGATCAAATGCCATTTCTTGACATTCTTTTTTTTTTTTTAATTGTTCTACTCTTGAATTTGTTATAATCACGTGTTTCAACGTTGATCAATTCGGAAAATGAATCATCGAATGGAGATAGTATTACTTCGATGATCTTTTTCTTGATATGGGACTACTCTTAATAATTCTGAACCGTCAGTGCCATATAGCCACTGCTAGGATTGAGTTTTCTTTCTAAAAATTTGACATGAATACTTTGATTCTCTAAGTAAGTTGGTTTTGAGTTATTGTTTCAGTACCCTAGTTCTCTTGTTTCGATCAAGATAAT

mRNA sequence

ATGTTCTTCTTCATACTAGACCAAACCCATGAGCTAGCCGAAGCACTGTACGTAATCGCCAGCGTTACTGACATAGCCTATCTCAAATTCTCAATGGAAAAAATGTCCATAATGGGCAGTGCCTCACCAGAAACTGATTGCATCATAGCAATACAACTCTGCCCTCCATACTTCCAAAATTATACCTGCAACCATCTTCATTATTCATGGATTAACATCCACAAAATCTTCCCTCTCATGTCCGATCTCAACCGAGCCGGCTTCTCTTCCTTGTCCTTCTCTTTTACAGCCCCGAATCTTGCCAACCTCAGTGGCCGATGCGTTATTGGAGGTATTGAAGAATCGGGTTTGATTAAATATATAATCACTCTTCATCCAATGCATACTTTCTGCAATTTGGTTCGTCAAACTGAAAGGGTATGGCTATTCAAGTCCGATGAAGCTGCCAAAGGTGTAATTGCTGCCCCTCTAGGACTGCATGCTCGATTTGTGACCTATTTTCCTGATGATTGGAAAGAATGAAATGGGAAAGTTTGTGTAGCCTTACAAAACTATGATCAAATGCCATTTCTTGACATTCTTTTTTTTTTTTTAATTGTTCTACTCTTGAATTTGTTATAATCACGTGTTTCAACGTTGATCAATTCGGAAAATGAATCATCGAATGGAGATAGTATTACTTCGATGATCTTTTTCTTGATATGGGACTACTCTTAATAATTCTGAACCGTCAGTGCCATATAGCCACTGCTAGGATTGAGTTTTCTTTCTAAAAATTTGACATGAATACTTTGATTCTCTAAGTAAGTTGGTTTTGAGTTATTGTTTCAGTACCCTAGTTCTCTTGTTTCGATCAAGATAAT

Coding sequence (CDS)

ATGTTCTTCTTCATACTAGACCAAACCCATGAGCTAGCCGAAGCACTGTACGTAATCGCCAGCGTTACTGACATAGCCTATCTCAAATTCTCAATGGAAAAAATGTCCATAATGGGCAGTGCCTCACCAGAAACTGATTGCATCATAGCAATACAACTCTGCCCTCCATACTTCCAAAATTATACCTGCAACCATCTTCATTATTCATGGATTAACATCCACAAAATCTTCCCTCTCATGTCCGATCTCAACCGAGCCGGCTTCTCTTCCTTGTCCTTCTCTTTTACAGCCCCGAATCTTGCCAACCTCAGTGGCCGATGCGTTATTGGAGGTATTGAAGAATCGGGTTTGATTAAATATATAATCACTCTTCATCCAATGCATACTTTCTGCAATTTGGTTCGTCAAACTGAAAGGGTATGGCTATTCAAGTCCGATGAAGCTGCCAAAGGTGTAATTGCTGCCCCTCTAGGACTGCATGCTCGATTTGTGACCTATTTTCCTGATGATTGGAAAGAATGA

Protein sequence

MFFFILDQTHELAEALYVIASVTDIAYLKFSMEKMSIMGSASPETDCIIAIQLCPPYFQNYTCNHLHYSWINIHKIFPLMSDLNRAGFSSLSFSFTAPNLANLSGRCVIGGIEESGLIKYIITLHPMHTFCNLVRQTERVWLFKSDEAAKGVIAAPLGLHARFVTYFPDDWKE
Homology
[Close]
BLAST of Cp4.1LG12g04290 vs. TrEMBL
Match: A0A0A0K833_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G002320 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 6.1e-18
Identity = 51/105 (48.57%), Postives = 67/105 (63.81%), Query Frame = 1 

Query: 1   MFFFILDQTHELAEALYVIASVTDIAYLKFSMEKMSIMGSASPETDCIIAIQLCPPYF-Q 60
           MF FILD+ H   +A+  +A +  +  LKFS E  SIM + +P   C IA+QL PP+F Q
Sbjct: 1   MFVFILDEIHSFVDAVSALAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQ 60

Query: 61  NYTCNHLHYSWINIHKIFPLMSDLNRAGFSSLSFSFTAPNLANLS 105
            Y+C  LHYSWI I+  FP M  L R GFSSL+FSF   + A+L+
Sbjct: 61  QYSCQQLHYSWIYINHFFPEMFHLERTGFSSLTFSFADSHHADLT 105

[Close]
BLAST of Cp4.1LG12g04290 vs. TrEMBL
Match: A0A0A0KA18_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G006750 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 5.5e-11
Identity = 33/86 (38.37%), Postives = 53/86 (61.63%), Query Frame = 1 

Query: 85  RAGFSSLSFSFTAPNLANLSGRCVIGGIEESGLIKYIITLHPMHTFCNLVRQTERVWLFK 144
           R  FSS +   T   ++   GRC++GG+     +++IIT+   + F +   Q++R+WLFK
Sbjct: 170 RVSFSSSTIQETT--ISAEDGRCIVGGVRAPVQVQFIITMSQPNAFFHFASQSKRIWLFK 229

Query: 145 SDEAAKGVIAAPLGLHARFVTYFPDD 171
              + KG+I APLGL+ R V++F DD
Sbjct: 230 EVNSTKGIITAPLGLYGRLVSFFCDD 253

[Close]
BLAST of Cp4.1LG12g04290 vs. TrEMBL
Match: A0A0A0LIF2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G848840 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.7e-10
Identity = 30/70 (42.86%), Postives = 47/70 (67.14%), Query Frame = 1 

Query: 100 LANLSGRCVIGGIEESGLIKYIITLHPMHTFCNLVRQTERVWLFKSDEAAKGVIAAPLGL 159
           L+  +G+C+IGG+     ++++ITL P   F ++  QT+RVW FK   + +G+I APLGL
Sbjct: 181 LSPQNGQCIIGGLRAPDEVEFVITLGPQEVFNHIASQTKRVWFFKQCNSNRGLITAPLGL 240

Query: 160 HARFVTYFPD 170
           +AR V +F D
Sbjct: 241 NARLVAFFCD 250

[Close]
BLAST of Cp4.1LG12g04290 vs. TrEMBL
Match: A0A0A0KFM5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G106730 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.8e-09
Identity = 27/65 (41.54%), Postives = 44/65 (67.69%), Query Frame = 1 

Query: 105 GRCVIGGIEESGLIKYIITLHPMHTFCNLVRQTERVWLFKSDEAAKGVIAAPLGLHARFV 164
           G+C+IGG+     +++IIT+   + F +   Q++R+WLFK   + KG+I APLGL+ R V
Sbjct: 188 GQCLIGGVRAPNQVQFIITMSQPNAFFHFASQSKRIWLFKEVNSTKGIITAPLGLYGRLV 247

Query: 165 TYFPD 170
           ++F D
Sbjct: 248 SFFCD 252

[Close]
BLAST of Cp4.1LG12g04290 vs. TrEMBL
Match: A0A0A0LLD1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G154090 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.1e-08
Identity = 26/64 (40.62%), Postives = 41/64 (64.06%), Query Frame = 1 

Query: 105 GRCVIGGIEESGLIKYIITLHPMHTFCNLVRQTERVWLFKSDEAAKGVIAAPLGLHARFV 164
           G C+I G+ +   ++++I ++P H + N+  Q +RVWLFKS +     I AP+GL A+F 
Sbjct: 92  GECIIEGVGKGPAVEFLIPVYPTHVYYNITFQAQRVWLFKSADKCGTFIIAPVGLFAQFA 151

Query: 165 TYFP 169
            YFP
Sbjct: 152 IYFP 155

[Close]
BLAST of Cp4.1LG12g04290 vs. NCBI nr
Match: gi|659116807|ref|XP_008458269.1| (PREDICTED: uncharacterized protein LOC103497738 [Cucumis melo])

HSP 1 Score: 99.4 bits (246), Expect = 6.7e-18
Identity = 51/105 (48.57%), Postives = 68/105 (64.76%), Query Frame = 1 

Query: 1   MFFFILDQTHELAEALYVIASVTDIAYLKFSMEKMSIMGSASPETDCIIAIQLCPPYF-Q 60
           MF FIL++ H   +A+ V+A +  +  LKFS E  SIM + +P   C IA+QL PP+F Q
Sbjct: 1   MFVFILEEIHSFVDAVSVLAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQ 60

Query: 61  NYTCNHLHYSWINIHKIFPLMSDLNRAGFSSLSFSFTAPNLANLS 105
            Y+C  LHYSWI I+  FP M D+ R GFSSL+FSF     A+L+
Sbjct: 61  QYSCQQLHYSWIYINPFFPEMFDMERTGFSSLTFSFADSLHADLT 105

[Close]
BLAST of Cp4.1LG12g04290 vs. NCBI nr
Match: gi|700190434|gb|KGN45638.1| (hypothetical protein Csa_6G002320 [Cucumis sativus])

HSP 1 Score: 99.0 bits (245), Expect = 8.7e-18
Identity = 51/105 (48.57%), Postives = 67/105 (63.81%), Query Frame = 1 

Query: 1   MFFFILDQTHELAEALYVIASVTDIAYLKFSMEKMSIMGSASPETDCIIAIQLCPPYF-Q 60
           MF FILD+ H   +A+  +A +  +  LKFS E  SIM + +P   C IA+QL PP+F Q
Sbjct: 1   MFVFILDEIHSFVDAVSALAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQ 60

Query: 61  NYTCNHLHYSWINIHKIFPLMSDLNRAGFSSLSFSFTAPNLANLS 105
            Y+C  LHYSWI I+  FP M  L R GFSSL+FSF   + A+L+
Sbjct: 61  QYSCQQLHYSWIYINHFFPEMFHLERTGFSSLTFSFADSHHADLT 105

[Close]
BLAST of Cp4.1LG12g04290 vs. NCBI nr
Match: gi|778709186|ref|XP_004138491.2| (PREDICTED: uncharacterized protein LOC101219791 [Cucumis sativus])

HSP 1 Score: 75.9 bits (185), Expect = 7.9e-11
Identity = 33/86 (38.37%), Postives = 53/86 (61.63%), Query Frame = 1 

Query: 85  RAGFSSLSFSFTAPNLANLSGRCVIGGIEESGLIKYIITLHPMHTFCNLVRQTERVWLFK 144
           R  FSS +   T   ++   GRC++GG+     +++IIT+   + F +   Q++R+WLFK
Sbjct: 170 RVSFSSSTIQETT--ISAEDGRCIVGGVRAPVQVQFIITMSQPNAFFHFASQSKRIWLFK 229

Query: 145 SDEAAKGVIAAPLGLHARFVTYFPDD 171
              + KG+I APLGL+ R V++F DD
Sbjct: 230 EVNSTKGIITAPLGLYGRLVSFFCDD 253

[Close]
BLAST of Cp4.1LG12g04290 vs. NCBI nr
Match: gi|778686236|ref|XP_011652354.1| (PREDICTED: uncharacterized protein LOC101206630 isoform X2 [Cucumis sativus])

HSP 1 Score: 75.1 bits (183), Expect = 1.3e-10
Identity = 32/77 (41.56%), Postives = 49/77 (63.64%), Query Frame = 1 

Query: 93  FSFTAPNLANLSGRCVIGGIEESGLIKYIITLHPMHTFCNLVRQTERVWLFKSDEAAKGV 152
           FS++      LS +C+IGG+     ++++ITL P   F ++  QT+RVW FK   + +G+
Sbjct: 171 FSYSTMQETILSPQCIIGGLRAPDEVEFVITLGPQEVFNHIASQTKRVWFFKQCNSNRGL 230

Query: 153 IAAPLGLHARFVTYFPD 170
           I APLGL+AR V +F D
Sbjct: 231 ITAPLGLNARLVAFFCD 247

[Close]
BLAST of Cp4.1LG12g04290 vs. NCBI nr
Match: gi|659119586|ref|XP_008459734.1| (PREDICTED: uncharacterized protein LOC103498776 [Cucumis melo])

HSP 1 Score: 73.6 bits (179), Expect = 3.9e-10
Identity = 34/83 (40.96%), Postives = 52/83 (62.65%), Query Frame = 1 

Query: 92  SFSFTAPNLANL-SGRCVIGGIEESGLIKYIITLHPMHTFCNLVRQTERVWLFKSDEAAK 151
           S+S     + N  +G+C+IGGI+    +++I+TL P   F ++  QT+RVW FK   + K
Sbjct: 171 SYSIMQETILNQQNGQCIIGGIKAPNQVQFILTLGPSEVFNHIASQTKRVWFFKQCNSNK 230

Query: 152 GVIAAPLGLHARFVTYFPDDWKE 174
           G+I APLGL++R V  F D + E
Sbjct: 231 GLITAPLGLNSRLVACFFDVFAE 253

The following BLAST results are available for this feature:
BLAST of Cp4.1LG12g04290 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG12g04290 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K833_CUCSA6.1e-1848.57Uncharacterized protein OS=Cucumis sativus GN=Csa_6G002320 PE=4 SV=1[more]
A0A0A0KA18_CUCSA5.5e-1138.37Uncharacterized protein OS=Cucumis sativus GN=Csa_6G006750 PE=4 SV=1[more]
A0A0A0LIF2_CUCSA2.7e-1042.86Uncharacterized protein OS=Cucumis sativus GN=Csa_3G848840 PE=4 SV=1[more]
A0A0A0KFM5_CUCSA1.8e-0941.54Uncharacterized protein OS=Cucumis sativus GN=Csa_6G106730 PE=4 SV=1[more]
A0A0A0LLD1_CUCSA1.1e-0840.63Uncharacterized protein OS=Cucumis sativus GN=Csa_2G154090 PE=4 SV=1[more]
BLAST of Cp4.1LG12g04290 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG12g04290 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659116807|ref|XP_008458269.1|6.7e-1848.57PREDICTED: uncharacterized protein LOC103497738 [Cucumis melo][more]
gi|700190434|gb|KGN45638.1|8.7e-1848.57hypothetical protein Csa_6G002320 [Cucumis sativus][more]
gi|778709186|ref|XP_004138491.2|7.9e-1138.37PREDICTED: uncharacterized protein LOC101219791 [Cucumis sativus][more]
gi|778686236|ref|XP_011652354.1|1.3e-1041.56PREDICTED: uncharacterized protein LOC101206630 isoform X2 [Cucumis sativus][more]
gi|659119586|ref|XP_008459734.1|3.9e-1040.96PREDICTED: uncharacterized protein LOC103498776 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG12g04290.1Cp4.1LG12g04290.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG12g04290Cucurbita pepo (Zucchini)cpecpeB159
Cp4.1LG12g04290Cucumber (Gy14) v1cgycpeB0286
Cp4.1LG12g04290Cucurbita maxima (Rimu)cmacpeB371
Cp4.1LG12g04290Cucurbita maxima (Rimu)cmacpeB904
Cp4.1LG12g04290Cucurbita moschata (Rifu)cmocpeB335
Cp4.1LG12g04290Cucurbita moschata (Rifu)cmocpeB840
Cp4.1LG12g04290Wild cucumber (PI 183967)cpecpiB154
Cp4.1LG12g04290Cucumber (Chinese Long) v2cpecuB152
Cp4.1LG12g04290Bottle gourd (USVL1VR-Ls)cpelsiB101
Cp4.1LG12g04290Watermelon (Charleston Gray)cpewcgB144
Cp4.1LG12g04290Watermelon (97103) v1cpewmB155
Cp4.1LG12g04290Melon (DHL92) v3.5.1cpemeB112
Cp4.1LG12g04290Cucumber (Gy14) v2cgybcpeB732
Cp4.1LG12g04290Melon (DHL92) v3.6.1cpemedB138
Cp4.1LG12g04290Silver-seed gourdcarcpeB0850
Cp4.1LG12g04290Silver-seed gourdcarcpeB1250
Cp4.1LG12g04290Cucumber (Chinese Long) v3cpecucB0176
Cp4.1LG12g04290Wax gourdcpewgoB0174