Cp4.1LG12g03840 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG12g03840
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionHMG-I and HMG-Y, DNA-binding
LocationCp4.1LG12 : 2738880 .. 2740237 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGATCCGGAAGAACGCGAAGTTATCGCCACTGTTGTTTTCGGCTGTGGAGTGCGTTCCGCAGGTTCTTCAGACGCACGTTTGTCAGTTGAACCAGTCGCCATGGGATGTGATTCCTCTCGAGCAACACGCCGCGCACCAGGTTTTAATTAGTTGAGTTGAAGAAATGGAGAGATTTCTTTTATCTCTAATCTTTTAAATCTGTAATCTGTTTCTTCTGTGTAGATCTGTTTTTCTCTTCCTTCTCCTTGCATTTCCCTCTCTCTTTAGGGTTCTTTGTTTCCCCTTCCATTTTAGGGTTCATCCGAAAACCCTAAAAATTATCCTCGTTCTTCTCGTGATTAGGTTAATGATTCTTACTCACCTTCTGCTCTATTTCTCGATGTTTCGTGTTCTCACAGCTCGAGGAGGTCGAAGATAGCTTCTACGAAAATGCTAGTTTAGGCGGTTCTATCGGAGCCGTCGAGAGGTGAGTTTATTTGTTTCTGTGACCTCTGCTGTTTGTTGTTATTGATTTGCGTTATTTATGATTCTTTCCGTTGCGTAAATAGTCGCGGTTGAGTGAACAAGTAAATGCTCATACGATAATCCGAAATAATTTCCTCGAAGCTAAAAGGTCTGGTAGTGTGATTATTATCGTCTGTCTGTGCGTGCCTTTTTGTGGATTCGAAATTTCGTTTGGAATTTATTTTTGCATATGTATATACGAATCACAGCGTTGCGTCGATGATGGAGGGATCAGCGAAGTTATCGAATAATAATATTGTTATTACCAACGAGAGTGAAGTAATGGCAGACAAGGATGGGGATTATTGTGAAGATTTGGATGAAAATGGAGATGAATTCGAGAAATTAGTCGATAGCAGTTTGAAACAATTTCAGGAGGAAGATTATTCTTCGTTTAGTTTCGACCGCCGTCACCACCACCGCCGTTCACATCTTAGGTCTAGCGAGAATAATTATTATTCTACTCTCAATAATTCCTCGATTTCAAGGAAATCCGCCGCCGGATGTACCGTCTCGCGGCGGATGCGGCCGCCAAAGGCTTCGAAGAAGGCGGTTAGTGCGGCGACGGGATCGAATCCGTACGAGTTTTATTATTATTCTGGATTCGGACCGCTGTGGGGGAAGAAACGACGGGAGAGAGGAGGGGAAGACGGTGGGAAATCGAGCGAAAATAGGGCGGGAATTCGGAGTAATGCGACGGTGCCATCGCCGTCACTGTCGGAACACGGCAAGGAATTAGATTATGTCGAAGAGGACGACGACGAGGAGGAGGAGGAGAAGGACGGCGACGGCGGGAAGAAGCGGATGAGGAAGCCGGTGAAAGCGCGGTCGTTGAAGTCGCTGATGTGA

mRNA sequence

ATGAGGATCCGGAAGAACGCGAAGTTATCGCCACTGTTGTTTTCGGCTGTGGAGTGCGTTCCGCAGGTTCTTCAGACGCACGTTTGTCAGTTGAACCAGTCGCCATGGGATGTGATTCCTCTCGAGCAACACGCCGCGCACCAGCTCGAGGAGGTCGAAGATAGCTTCTACGAAAATGCTAGTTTAGGCGGTTCTATCGGAGCCGTCGAGAGCGTTGCGTCGATGATGGAGGGATCAGCGAAGTTATCGAATAATAATATTGTTATTACCAACGAGAGTGAAGTAATGGCAGACAAGGATGGGGATTATTGTGAAGATTTGGATGAAAATGGAGATGAATTCGAGAAATTAGTCGATAGCAGTTTGAAACAATTTCAGGAGGAAGATTATTCTTCGTTTAGTTTCGACCGCCGTCACCACCACCGCCGTTCACATCTTAGGTCTAGCGAGAATAATTATTATTCTACTCTCAATAATTCCTCGATTTCAAGGAAATCCGCCGCCGGATGTACCGTCTCGCGGCGGATGCGGCCGCCAAAGGCTTCGAAGAAGGCGGTTAGTGCGGCGACGGGATCGAATCCGTACGAGTTTTATTATTATTCTGGATTCGGACCGCTGTGGGGGAAGAAACGACGGGAGAGAGGAGGGGAAGACGGTGGGAAATCGAGCGAAAATAGGGCGGGAATTCGGAGTAATGCGACGGTGCCATCGCCGTCACTGTCGGAACACGGCAAGGAATTAGATTATGTCGAAGAGGACGACGACGAGGAGGAGGAGGAGAAGGACGGCGACGGCGGGAAGAAGCGGATGAGGAAGCCGGTGAAAGCGCGGTCGTTGAAGTCGCTGATGTGA

Coding sequence (CDS)

ATGAGGATCCGGAAGAACGCGAAGTTATCGCCACTGTTGTTTTCGGCTGTGGAGTGCGTTCCGCAGGTTCTTCAGACGCACGTTTGTCAGTTGAACCAGTCGCCATGGGATGTGATTCCTCTCGAGCAACACGCCGCGCACCAGCTCGAGGAGGTCGAAGATAGCTTCTACGAAAATGCTAGTTTAGGCGGTTCTATCGGAGCCGTCGAGAGCGTTGCGTCGATGATGGAGGGATCAGCGAAGTTATCGAATAATAATATTGTTATTACCAACGAGAGTGAAGTAATGGCAGACAAGGATGGGGATTATTGTGAAGATTTGGATGAAAATGGAGATGAATTCGAGAAATTAGTCGATAGCAGTTTGAAACAATTTCAGGAGGAAGATTATTCTTCGTTTAGTTTCGACCGCCGTCACCACCACCGCCGTTCACATCTTAGGTCTAGCGAGAATAATTATTATTCTACTCTCAATAATTCCTCGATTTCAAGGAAATCCGCCGCCGGATGTACCGTCTCGCGGCGGATGCGGCCGCCAAAGGCTTCGAAGAAGGCGGTTAGTGCGGCGACGGGATCGAATCCGTACGAGTTTTATTATTATTCTGGATTCGGACCGCTGTGGGGGAAGAAACGACGGGAGAGAGGAGGGGAAGACGGTGGGAAATCGAGCGAAAATAGGGCGGGAATTCGGAGTAATGCGACGGTGCCATCGCCGTCACTGTCGGAACACGGCAAGGAATTAGATTATGTCGAAGAGGACGACGACGAGGAGGAGGAGGAGAAGGACGGCGACGGCGGGAAGAAGCGGATGAGGAAGCCGGTGAAAGCGCGGTCGTTGAAGTCGCTGATGTGA

Protein sequence

MRIRKNAKLSPLLFSAVECVPQVLQTHVCQLNQSPWDVIPLEQHAAHQLEEVEDSFYENASLGGSIGAVESVASMMEGSAKLSNNNIVITNESEVMADKDGDYCEDLDENGDEFEKLVDSSLKQFQEEDYSSFSFDRRHHHRRSHLRSSENNYYSTLNNSSISRKSAAGCTVSRRMRPPKASKKAVSAATGSNPYEFYYYSGFGPLWGKKRRERGGEDGGKSSENRAGIRSNATVPSPSLSEHGKELDYVEEDDDEEEEEKDGDGGKKRMRKPVKARSLKSLM
Homology
[Close]
BLAST of Cp4.1LG12g03840 vs. TrEMBL
Match: A0A0A0K7G9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G005150 PE=4 SV=1)

HSP 1 Score: 370.9 bits (951), Expect = 1.4e-99
Identity = 212/271 (78.23%), Postives = 230/271 (84.87%), Query Frame = 1 

Query: 20  VPQVLQTHVCQLNQSPWDVIPLEQHAAHQLEEVEDSFYENASLGGSIGAVESVASMMEGS 79
           VP+ LQTH+CQLNQSPWDVIPL QH  +QLEE EDSF ENAS G S+GAVESV+SMME S
Sbjct: 6   VPEALQTHICQLNQSPWDVIPLHQHDTNQLEEAEDSFNENASFGDSVGAVESVSSMMEES 65

Query: 80  AKLSNNNIVITNESEVMADKDGDYCEDLDENGDEFEKLVDSSLK---QFQEEDYSSFSFD 139
            KLSNNNIVITN +EVMADKDGDYCED DENG+ FEKLVDSSLK   QF+EEDYSSFS D
Sbjct: 66  GKLSNNNIVITNGNEVMADKDGDYCEDFDENGNGFEKLVDSSLKCKKQFKEEDYSSFSSD 125

Query: 140 RRHHHRRSHLRSSENNYYSTLNNSSISRKSAAGCTVSRRMRPPKASKKAVSAAT-GSNPY 199
              HHRRS LRSSENNYYSTL+N SIS+KSA G TVSRR+RP + SKKAV+AA  GSNPY
Sbjct: 126 I--HHRRSFLRSSENNYYSTLDNCSISKKSATGGTVSRRIRPARCSKKAVNAAAGGSNPY 185

Query: 200 EFYYYSGFGPLWGKKRRERGG-EDGGKSSENRAGIRSNATVPSPSLSEHGKELDYVEEDD 259
           EFYYYSGFGPLWGKKRR+RGG EDGGKSSEN  GIRSNAT PSPS  E   ELDYVE D+
Sbjct: 186 EFYYYSGFGPLWGKKRRDRGGEEDGGKSSENTTGIRSNATTPSPSDME---ELDYVEYDE 245

Query: 260 DEEEEEKD--GDGGKKRMRKPVKARSLKSLM 284
           D+EEE+ D  G+GGKKRMRKPVKARSLKSLM
Sbjct: 246 DDEEEDGDGEGEGGKKRMRKPVKARSLKSLM 271

[Close]
BLAST of Cp4.1LG12g03840 vs. TrEMBL
Match: B9I8M6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s08340g PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 8.3e-41
Identity = 139/309 (44.98%), Postives = 178/309 (57.61%), Query Frame = 1 

Query: 1   MRIRKNAKLSPLLFSAVECVPQVLQTHVCQLNQSPWDVIPLEQHAAHQLE-----EVEDS 60
           MRIRKNAKLSPL+FS      Q LQTHVCQLNQSPWDVI   Q   +        E EDS
Sbjct: 1   MRIRKNAKLSPLMFSQGSSEAQPLQTHVCQLNQSPWDVISFSQETYYPSSSLYQFEGEDS 60

Query: 61  FYENASLGGSIGAVESVASMM------EGSAKLSNNNIVIT-----NESEVMADKDGDYC 120
           F  N SLG S+GAVESVASMM      +G  K+  +++VI      NE    ++  GDY 
Sbjct: 61  FNGNGSLGDSVGAVESVASMMMEDIEEKGMMKMKVDHMVIVDDNYENEGNKRSEMFGDYE 120

Query: 121 EDLDENGDEFEKL--VDSSLKQFQEEDYSSFSFDRRHHHRRSHLRSSENNYYSTLNNSSI 180
           E   ++  + +K    D      + +  +  +    HHH  SH +SS +N  + +N S+ 
Sbjct: 121 EMKIDSEFKLKKCNKTDGKGWHCKNDTKNGHTVCDHHHHLTSH-KSSYSNINNNINGSAA 180

Query: 181 SRK--SAAGCTVSRRMRPPKASKKAVSAATGSNPYEFYYYSGFGPLWGKKRRERG--GED 240
           ++K    A    +RR R   A K    +++ SNPYEFYYYSGFGPLWGK+R ++    ++
Sbjct: 181 TKKPDKVASIIGARRGRAKSAKK---GSSSSSNPYEFYYYSGFGPLWGKRRGDKDTVNKN 240

Query: 241 GGKSSENRAGIRSNA--TVPSPSLS--EHGKELDYVEEDDDEEEEEKDGDGGKKRMRKPV 284
             K  +N   I S    T PS S S  E+ +  DYV+EDDD+EEE    D GKKRMRKPV
Sbjct: 241 EAKDVDNSTVIGSMIPNTTPSSSYSPIENNQGFDYVDEDDDDEEE----DSGKKRMRKPV 300

[Close]
BLAST of Cp4.1LG12g03840 vs. TrEMBL
Match: B9RDV2_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1616170 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 2.3e-38
Identity = 141/317 (44.48%), Postives = 181/317 (57.10%), Query Frame = 1 

Query: 1   MRIRKNAKLSPLLFSAVECVPQVLQTHVCQLNQSPWDVIPLEQHA-----AHQLEEVEDS 60
           MRIRKNA LS L+FS      +VLQTHVCQLNQSPWDVIP  Q A      HQ E  EDS
Sbjct: 1   MRIRKNANLSSLMFSHASGT-EVLQTHVCQLNQSPWDVIPFSQEAYQSSHLHQYEG-EDS 60

Query: 61  FYENASLGGSIGAVES--VASMME------GSAKLSNNNIVITN-----------ESEVM 120
           F  N SL  SIGAVES  VAS+ME       + K+  NN+VI +           E + M
Sbjct: 61  FSGNGSLADSIGAVESSSVASLMEYDPEDKAAIKIKVNNMVIVDDDNYEIRRINQEKKTM 120

Query: 121 ADKDGDYCEDLDENGDEFEKLVDSSLKQFQEEDYSSFSFDRRHHHRRSHLRSSENNYYST 180
           +++D ++   L + G++         K++  ++          HH  S L+SS NN  ++
Sbjct: 121 SEEDCEFNHKL-KKGEKIYCCNKIDGKEWHCKNELKEGHSMCDHHILSSLKSSYNNNVTS 180

Query: 181 L-----NNSSISRKSAAGCTVSRRMRPPKASKKAVSAATGSNPYEFYYYSGFGPLWGKKR 240
                  NS   +K       +RR R  K +KK  S++  SNPYEFYYYSGFGPLWGK+R
Sbjct: 181 ACIASPTNSPSIKKPEKAVAGTRRGRG-KGAKKGQSSS--SNPYEFYYYSGFGPLWGKRR 240

Query: 241 RERGGEDGGKSSENRAG----IRSNATVPSPSLS-EHGKELDYVEEDDDEEEEEKDGDGG 284
            +RG  +  +S E+       I  N T  S  L  E  +ELD+V+EDDD++E+ + GD G
Sbjct: 241 GDRGEGNKNESKESEISGAIAIHHNTTPFSAPLPIEDHQELDFVDEDDDDDEDSEGGDIG 300

[Close]
BLAST of Cp4.1LG12g03840 vs. TrEMBL
Match: A0A067K0J8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14369 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 2.1e-36
Identity = 143/318 (44.97%), Postives = 180/318 (56.60%), Query Frame = 1 

Query: 1   MRIRKNAKLSPLLFSAVECVPQVLQTHVCQLNQSPWDVIPLEQH----AAHQLEEVEDSF 60
           MRIRKNA LS L+ S     P+ LQTHVCQLNQSPWDVIP  Q     + HQ EE EDSF
Sbjct: 1   MRIRKNANLSSLISSHASG-PESLQTHVCQLNQSPWDVIPFSQETYPSSLHQFEE-EDSF 60

Query: 61  YENASLGGSIGAVES--VASMMEGS---AKLSNNNIVITN--ESEVMADKDGDYCEDLDE 120
             N SLG SIGAVES  VAS+ME +   A ++ +N++I +  E E +A+K   + +D  E
Sbjct: 61  NGNGSLGNSIGAVESSSVASLMEDAEDKAAMTVDNMIIDDNYEMERIAEKKRVF-DDYQE 120

Query: 121 N--GDEFE-----KL-----VDSSLKQFQEEDYSSFSFDRRHHHRRSHLRSSENNYYSTL 180
              G EF+     KL      D      + E     S    H        +  N+  S  
Sbjct: 121 MKIGSEFKLKKGGKLHCCNKTDGKGWHCKNETKEGHSICDHHFILLKSYNNVSNSCISLP 180

Query: 181 NNSSISRKSAAGCTVSRRMRPPKASKKAVSAATGSNPYEFYYYSGFGPLWGKKRRERGGE 240
            + S  ++        RR R  KA+KK  S+   SNPYEFYYYSGFGPLWGK+R   GG+
Sbjct: 181 TSPSTKKQEKVNLAGGRRGRG-KAAKKGSSST--SNPYEFYYYSGFGPLWGKRR---GGD 240

Query: 241 DGGKSSENRA--------GIRSNATVPSP---SLSEHGKELDYVEEDDDEEEEEKDGDGG 284
             G+ ++N +         I    T PSP   S  EH +E D+V+EDDD+EE+ ++GD G
Sbjct: 241 KFGEGNKNESKESEINGMDIGPRNTTPSPTTCSSIEHHEEFDFVDEDDDDEEDSENGDSG 300

[Close]
BLAST of Cp4.1LG12g03840 vs. TrEMBL
Match: I1KI73_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_07G068200 PE=4 SV=2)

HSP 1 Score: 158.7 bits (400), Expect = 1.1e-35
Identity = 129/311 (41.48%), Postives = 169/311 (54.34%), Query Frame = 1 

Query: 1   MRIRKNAKLSPLLFSAVECVPQ---VLQTHVCQLNQSPWDVIPLEQHAAH-QLEEVEDSF 60
           MRIRKNAKLSPLLFS+  C+      L+THVCQLNQSPWDVIP +  +   QL+    + 
Sbjct: 1   MRIRKNAKLSPLLFSSSSCLQGGSVPLETHVCQLNQSPWDVIPFDSDSIQFQLDHSFAAG 60

Query: 61  YENASLGGSIGAVESVASMMEGSAKLSNNNIVITNESEVMADKDGDYCEDLDENGDEFEK 120
             N S   S GAVESVASMM+   K S ++ ++ + + +  D   +       N   +  
Sbjct: 61  NNNGSAENSFGAVESVASMMDAD-KTSYHSTLVVDVAPINIDATTNMTNPCQFNDKGWPC 120

Query: 121 LVDSSLKQFQEEDYSSFSFDRRHHHRRSHLRSSENNYYSTLNNSSISRKSAAGCTVSRRM 180
           + +    Q   E + S+S    HHH             ++    + ++ SA G   +RR 
Sbjct: 121 MNEVRQGQSFCEQHLSYSLLTPHHH-------------TSKKPQAQAQPSAPG---TRRG 180

Query: 181 RPPKASKKAVSAATG--SNPYEFYYYSGFGPLWGKKRRERGGEDGGKSS----ENRAGIR 240
           +P  A+ K  +A  G  SNPYEFYYYSGFGPLWGK+R +R G +G K+S    EN   + 
Sbjct: 181 KPRGAAGKKAAAGAGASSNPYEFYYYSGFGPLWGKRRGDRNGGEGSKNSSVGVENSTMVE 240

Query: 241 SNATV-----------------PSPSLSEHGKELDYVEEDDDEE-EEEKDGDGGKKRMRK 284
           S   V                 PS S  EH   +DYV++D++EE EEE   D GKKRMRK
Sbjct: 241 SKNGVGGADDGINDNVASVEVGPSVSEMEHEGIIDYVDDDEEEEGEEEGVDDSGKKRMRK 294

[Close]
BLAST of Cp4.1LG12g03840 vs. TAIR10
Match: AT4G00310.1 (AT4G00310.1 Putative membrane lipoprotein)

HSP 1 Score: 95.1 bits (235), Expect = 7.3e-20
Identity = 100/316 (31.65%), Postives = 142/316 (44.94%), Query Frame = 1 

Query: 1   MRIRKNAKLSPLLFSAVECVPQVLQTHVCQLNQSPWDVIPLEQHAAHQLEEVEDSFYENA 60
           MRIRKN KLS +L S   C  +   T+VC LNQSPWDVIP+      +L  + DS +   
Sbjct: 1   MRIRKNTKLSSVLLSTAGCGGERPDTYVCHLNQSPWDVIPVSSSGDCELTNLVDSSWFLP 60

Query: 61  SLGGSIGAVESVASMMEGSAKLSNNNIVITN--------ESEVMADKDGDYCEDLDENGD 120
               S  +   +     G     N N+ + +         S V +++     E L+ N  
Sbjct: 61  LSSSSSSSSPPLIHKFIGEEDSFNGNVSLGDCNDTAQRFNSSVSSNQSLVSVEKLNLNAA 120

Query: 121 EFEKLVDSSLKQFQEEDYSSFSFDRRHHHRRSHLRSSENNYYSTLNNSSISRKSAAGCTV 180
           E +K   S   + ++    S  +D++         + E N  S +  S    K       
Sbjct: 121 EEDKYAIS--PEVEDPMDQSDDYDKKS-------EALEPN--SPVKTSGDDEKVVVTIPT 180

Query: 181 SRRMRPPKASKKAVSAATGSNPYEFYYYSGFGPLWGKKRRERGGEDGGK-----SSENRA 240
           + +   P+ S K VSA    NPYEFYYYSGFGP WG+K   RGG D  K     S ++R+
Sbjct: 181 APKRGRPRGSGKKVSAPALKNPYEFYYYSGFGPRWGRK---RGGSDDEKMVINDSKKSRS 240

Query: 241 GIRSNATVPSPSLSEHG------KELDYVEEDDDEEEEEKDGDGGKKRM----------- 284
              S++       +  G       E D+V+ED D  E+++  D G+K+            
Sbjct: 241 SASSSSDEDGHKTAAFGGGSVSFDEFDFVDEDYDVMEQDQGSDHGRKKKNEKMIMMKKTM 300

[Close]
BLAST of Cp4.1LG12g03840 vs. NCBI nr
Match: gi|659116676|ref|XP_008458199.1| (PREDICTED: uncharacterized protein LOC103497701 [Cucumis melo])

HSP 1 Score: 402.5 bits (1033), Expect = 6.0e-109
Identity = 232/291 (79.73%), Postives = 252/291 (86.60%), Query Frame = 1 

Query: 1   MRIRKNAKLSPLLFSAVEC--VPQVLQTHVCQLNQSPWDVIPLEQHAAHQLEEVEDSFYE 60
           MRIRKNAKLSPLLFSA+E   VP+VLQTH+CQLNQSPWDVIPL QH  +QLEE EDSF  
Sbjct: 1   MRIRKNAKLSPLLFSAMESSSVPEVLQTHICQLNQSPWDVIPLHQHDTNQLEEAEDSFNG 60

Query: 61  NASLGGSIGAVESVASMMEGSAKLSNNNIVITNESEVMADKDGDYCEDLDENGDEFEKLV 120
           NAS G S+GAVESV+SMME SAKLSNNNIVITN +EVMADKDGDYCED DENG+ FEKLV
Sbjct: 61  NASFGDSVGAVESVSSMMEESAKLSNNNIVITNGNEVMADKDGDYCEDFDENGNGFEKLV 120

Query: 121 DSSLK---QFQEEDYSSFSFDRRHHHRRSHLRSSENNYYSTLNNSSISRKSAAGCTVSRR 180
           DS+LK   QF+EEDYSSFS D   HHRRS LRSSENNYYSTL+N SIS+KSAAG TVSRR
Sbjct: 121 DSNLKFKKQFKEEDYSSFSSDI--HHRRSFLRSSENNYYSTLDNCSISKKSAAGGTVSRR 180

Query: 181 MRPPKASKKAVSAAT-GSNPYEFYYYSGFGPLWGKKRRERGG-EDGGKSSENRAGIRSNA 240
           +RP ++SKKAV+AA  GSNPYEFYYYSGFGPLWGKKRR+RGG E+GGKSSEN  GIRSNA
Sbjct: 181 IRPARSSKKAVNAAAGGSNPYEFYYYSGFGPLWGKKRRDRGGEEEGGKSSENTTGIRSNA 240

Query: 241 TVPSPSLSEHGKELDYVEED-DDEEEEEKDGDGGKKRMRKPVKARSLKSLM 284
           T PSPS  E   ELDYVE+D DDEEEE+ DGDGGKKRMRKPVKARSLKSLM
Sbjct: 241 TTPSPSDVE---ELDYVEDDEDDEEEEDGDGDGGKKRMRKPVKARSLKSLM 286

[Close]
BLAST of Cp4.1LG12g03840 vs. NCBI nr
Match: gi|778709153|ref|XP_011656350.1| (PREDICTED: uncharacterized protein LOC105435722 [Cucumis sativus])

HSP 1 Score: 397.1 bits (1019), Expect = 2.5e-107
Identity = 229/292 (78.42%), Postives = 248/292 (84.93%), Query Frame = 1 

Query: 1   MRIRKNAKLSPLLFSAVEC--VPQVLQTHVCQLNQSPWDVIPLEQHAAHQLEEVEDSFYE 60
           MRIRKNAKLSPLLFSA+E   VP+ LQTH+CQLNQSPWDVIPL QH  +QLEE EDSF E
Sbjct: 1   MRIRKNAKLSPLLFSAMESSSVPEALQTHICQLNQSPWDVIPLHQHDTNQLEEAEDSFNE 60

Query: 61  NASLGGSIGAVESVASMMEGSAKLSNNNIVITNESEVMADKDGDYCEDLDENGDEFEKLV 120
           NAS G S+GAVESV+SMME S KLSNNNIVITN +EVMADKDGDYCED DENG+ FEKLV
Sbjct: 61  NASFGDSVGAVESVSSMMEESGKLSNNNIVITNGNEVMADKDGDYCEDFDENGNGFEKLV 120

Query: 121 DSSLK---QFQEEDYSSFSFDRRHHHRRSHLRSSENNYYSTLNNSSISRKSAAGCTVSRR 180
           DSSLK   QF+EEDYSSFS D   HHRRS LRSSENNYYSTL+N SIS+KSA G TVSRR
Sbjct: 121 DSSLKCKKQFKEEDYSSFSSDI--HHRRSFLRSSENNYYSTLDNCSISKKSATGGTVSRR 180

Query: 181 MRPPKASKKAVSAAT-GSNPYEFYYYSGFGPLWGKKRRERGG-EDGGKSSENRAGIRSNA 240
           +RP + SKKAV+AA  GSNPYEFYYYSGFGPLWGKKRR+RGG EDGGKSSEN  GIRSNA
Sbjct: 181 IRPARCSKKAVNAAAGGSNPYEFYYYSGFGPLWGKKRRDRGGEEDGGKSSENTTGIRSNA 240

Query: 241 TVPSPSLSEHGKELDYVEEDDDEEEEEKD--GDGGKKRMRKPVKARSLKSLM 284
           T PSPS  E   ELDYVE D+D+EEE+ D  G+GGKKRMRKPVKARSLKSLM
Sbjct: 241 TTPSPSDME---ELDYVEYDEDDEEEDGDGEGEGGKKRMRKPVKARSLKSLM 287

[Close]
BLAST of Cp4.1LG12g03840 vs. NCBI nr
Match: gi|700190471|gb|KGN45675.1| (hypothetical protein Csa_6G005150 [Cucumis sativus])

HSP 1 Score: 370.9 bits (951), Expect = 1.9e-99
Identity = 212/271 (78.23%), Postives = 230/271 (84.87%), Query Frame = 1 

Query: 20  VPQVLQTHVCQLNQSPWDVIPLEQHAAHQLEEVEDSFYENASLGGSIGAVESVASMMEGS 79
           VP+ LQTH+CQLNQSPWDVIPL QH  +QLEE EDSF ENAS G S+GAVESV+SMME S
Sbjct: 6   VPEALQTHICQLNQSPWDVIPLHQHDTNQLEEAEDSFNENASFGDSVGAVESVSSMMEES 65

Query: 80  AKLSNNNIVITNESEVMADKDGDYCEDLDENGDEFEKLVDSSLK---QFQEEDYSSFSFD 139
            KLSNNNIVITN +EVMADKDGDYCED DENG+ FEKLVDSSLK   QF+EEDYSSFS D
Sbjct: 66  GKLSNNNIVITNGNEVMADKDGDYCEDFDENGNGFEKLVDSSLKCKKQFKEEDYSSFSSD 125

Query: 140 RRHHHRRSHLRSSENNYYSTLNNSSISRKSAAGCTVSRRMRPPKASKKAVSAAT-GSNPY 199
              HHRRS LRSSENNYYSTL+N SIS+KSA G TVSRR+RP + SKKAV+AA  GSNPY
Sbjct: 126 I--HHRRSFLRSSENNYYSTLDNCSISKKSATGGTVSRRIRPARCSKKAVNAAAGGSNPY 185

Query: 200 EFYYYSGFGPLWGKKRRERGG-EDGGKSSENRAGIRSNATVPSPSLSEHGKELDYVEEDD 259
           EFYYYSGFGPLWGKKRR+RGG EDGGKSSEN  GIRSNAT PSPS  E   ELDYVE D+
Sbjct: 186 EFYYYSGFGPLWGKKRRDRGGEEDGGKSSENTTGIRSNATTPSPSDME---ELDYVEYDE 245

Query: 260 DEEEEEKD--GDGGKKRMRKPVKARSLKSLM 284
           D+EEE+ D  G+GGKKRMRKPVKARSLKSLM
Sbjct: 246 DDEEEDGDGEGEGGKKRMRKPVKARSLKSLM 271

[Close]
BLAST of Cp4.1LG12g03840 vs. NCBI nr
Match: gi|224130336|ref|XP_002320812.1| (hypothetical protein POPTR_0014s08340g [Populus trichocarpa])

HSP 1 Score: 175.6 bits (444), Expect = 1.2e-40
Identity = 139/309 (44.98%), Postives = 178/309 (57.61%), Query Frame = 1 

Query: 1   MRIRKNAKLSPLLFSAVECVPQVLQTHVCQLNQSPWDVIPLEQHAAHQLE-----EVEDS 60
           MRIRKNAKLSPL+FS      Q LQTHVCQLNQSPWDVI   Q   +        E EDS
Sbjct: 1   MRIRKNAKLSPLMFSQGSSEAQPLQTHVCQLNQSPWDVISFSQETYYPSSSLYQFEGEDS 60

Query: 61  FYENASLGGSIGAVESVASMM------EGSAKLSNNNIVIT-----NESEVMADKDGDYC 120
           F  N SLG S+GAVESVASMM      +G  K+  +++VI      NE    ++  GDY 
Sbjct: 61  FNGNGSLGDSVGAVESVASMMMEDIEEKGMMKMKVDHMVIVDDNYENEGNKRSEMFGDYE 120

Query: 121 EDLDENGDEFEKL--VDSSLKQFQEEDYSSFSFDRRHHHRRSHLRSSENNYYSTLNNSSI 180
           E   ++  + +K    D      + +  +  +    HHH  SH +SS +N  + +N S+ 
Sbjct: 121 EMKIDSEFKLKKCNKTDGKGWHCKNDTKNGHTVCDHHHHLTSH-KSSYSNINNNINGSAA 180

Query: 181 SRK--SAAGCTVSRRMRPPKASKKAVSAATGSNPYEFYYYSGFGPLWGKKRRERG--GED 240
           ++K    A    +RR R   A K    +++ SNPYEFYYYSGFGPLWGK+R ++    ++
Sbjct: 181 TKKPDKVASIIGARRGRAKSAKK---GSSSSSNPYEFYYYSGFGPLWGKRRGDKDTVNKN 240

Query: 241 GGKSSENRAGIRSNA--TVPSPSLS--EHGKELDYVEEDDDEEEEEKDGDGGKKRMRKPV 284
             K  +N   I S    T PS S S  E+ +  DYV+EDDD+EEE    D GKKRMRKPV
Sbjct: 241 EAKDVDNSTVIGSMIPNTTPSSSYSPIENNQGFDYVDEDDDDEEE----DSGKKRMRKPV 300

[Close]
BLAST of Cp4.1LG12g03840 vs. NCBI nr
Match: gi|743789611|ref|XP_011036800.1| (PREDICTED: uncharacterized protein LOC105134179 [Populus euphratica])

HSP 1 Score: 169.9 bits (429), Expect = 6.6e-39
Identity = 137/309 (44.34%), Postives = 176/309 (56.96%), Query Frame = 1 

Query: 1   MRIRKNAKLSPLLFSAVECVPQVLQTHVCQLNQSPWDVIPLEQHAAHQLE-----EVEDS 60
           MRIRKNAKLS L+FS      Q LQTHVCQLNQSPWDVI   Q   +        E EDS
Sbjct: 1   MRIRKNAKLSSLMFSQGSSGAQPLQTHVCQLNQSPWDVISFSQETYYPSSSLYQFEGEDS 60

Query: 61  FYENASLGGSIGAVESVASMM------EGSAKLSNNNIVIT-----NESEVMADKDGDYC 120
           F  N SLG S+GAVESVASMM      +G  K+  +++VI      NE    ++  GDY 
Sbjct: 61  FNGNGSLGDSVGAVESVASMMMEDSEEKGMMKMKVDHMVIVDDNYENEGNKRSEMFGDYE 120

Query: 121 EDLDENGDEFEKL--VDSSLKQFQEEDYSSFSFDRRHHHRRSHLRSSENNYYSTLNNSSI 180
           E   ++  + +K    D      + +  +  +    HHH  SH +SS +N  + +N S+ 
Sbjct: 121 EMKIDSEFKLKKCNKTDGKGWHCKNDTKNGRTVCDHHHHLTSH-KSSYSNINNNINGSAA 180

Query: 181 SRK--SAAGCTVSRRMRPPKASKKAVSAATGSNPYEFYYYSGFGPLWGKKRRERG--GED 240
           ++K    A    +RR R     K    +++ SNPYEFYYYSGFGPLWGK+R ++    ++
Sbjct: 181 TKKPDKVASIIGARRGRAKSVKK---GSSSSSNPYEFYYYSGFGPLWGKRRGDKDTVNKN 240

Query: 241 GGKSSENRAGIRSNA--TVPSPSLS--EHGKELDYVEEDDDEEEEEKDGDGGKKRMRKPV 284
             K  +N   I S    T PS S S  E+ +  DYV+EDDD+EEE    D GKKRMRKPV
Sbjct: 241 EAKDVDNSTVIGSMIPNTTPSSSYSPIENNQGFDYVDEDDDDEEE----DSGKKRMRKPV 300

The following BLAST results are available for this feature:
BLAST of Cp4.1LG12g03840 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG12g03840 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K7G9_CUCSA1.4e-9978.23Uncharacterized protein OS=Cucumis sativus GN=Csa_6G005150 PE=4 SV=1[more]
B9I8M6_POPTR8.3e-4144.98Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s08340g PE=4 SV=1[more]
B9RDV2_RICCO2.3e-3844.48Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1616170 PE=4 SV=1[more]
A0A067K0J8_JATCU2.1e-3644.97Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14369 PE=4 SV=1[more]
I1KI73_SOYBN1.1e-3541.48Uncharacterized protein OS=Glycine max GN=GLYMA_07G068200 PE=4 SV=2[more]
BLAST of Cp4.1LG12g03840 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G00310.17.3e-2031.65 Putative membrane lipoprotein[more]
BLAST of Cp4.1LG12g03840 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659116676|ref|XP_008458199.1|6.0e-10979.73PREDICTED: uncharacterized protein LOC103497701 [Cucumis melo][more]
gi|778709153|ref|XP_011656350.1|2.5e-10778.42PREDICTED: uncharacterized protein LOC105435722 [Cucumis sativus][more]
gi|700190471|gb|KGN45675.1|1.9e-9978.23hypothetical protein Csa_6G005150 [Cucumis sativus][more]
gi|224130336|ref|XP_002320812.1|1.2e-4044.98hypothetical protein POPTR_0014s08340g [Populus trichocarpa][more]
gi|743789611|ref|XP_011036800.1|6.6e-3944.34PREDICTED: uncharacterized protein LOC105134179 [Populus euphratica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG12g03840.1Cp4.1LG12g03840.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34680FAMILY NOT NAMEDcoord: 1..283
score: 1.8
NoneNo IPR availablePANTHERPTHR34680:SF1SUBFAMILY NOT NAMEDcoord: 1..283
score: 1.8

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG12g03840Cucsa.135670Cucumber (Gy14) v1cgycpeB0359
Cp4.1LG12g03840CmaCh17G004450Cucurbita maxima (Rimu)cmacpeB371
Cp4.1LG12g03840CmaCh08G009000Cucurbita maxima (Rimu)cmacpeB904
Cp4.1LG12g03840CmoCh08G008710Cucurbita moschata (Rifu)cmocpeB840
Cp4.1LG12g03840CmoCh17G004240Cucurbita moschata (Rifu)cmocpeB335
Cp4.1LG12g03840Cla001243Watermelon (97103) v1cpewmB158
Cp4.1LG12g03840Csa6G005150Cucumber (Chinese Long) v2cpecuB141
Cp4.1LG12g03840MELO3C021196Melon (DHL92) v3.5.1cpemeB112
Cp4.1LG12g03840ClCG06G003540Watermelon (Charleston Gray)cpewcgB144
Cp4.1LG12g03840CSPI06G00650Wild cucumber (PI 183967)cpecpiB143
Cp4.1LG12g03840Lsi09G015820Bottle gourd (USVL1VR-Ls)cpelsiB101
Cp4.1LG12g03840MELO3C021196.2Melon (DHL92) v3.6.1cpemedB138
Cp4.1LG12g03840CsaV3_6G000720Cucumber (Chinese Long) v3cpecucB0165
Cp4.1LG12g03840Bhi12G001677Wax gourdcpewgoB0177
Cp4.1LG12g03840CsGy6G000700Cucumber (Gy14) v2cgybcpeB721
Cp4.1LG12g03840Carg13835Silver-seed gourdcarcpeB0850
Cp4.1LG12g03840Carg05618Silver-seed gourdcarcpeB0099
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG12g03840Cp4.1LG17g03660Cucurbita pepo (Zucchini)cpecpeB159
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG12g03840Cucumber (Gy14) v2cgybcpeB596
Cp4.1LG12g03840Melon (DHL92) v3.6.1cpemedB137
Cp4.1LG12g03840Silver-seed gourdcarcpeB1294
Cp4.1LG12g03840Cucumber (Chinese Long) v3cpecucB0164
Cp4.1LG12g03840Wax gourdcpewgoB0179