Cp4.1LG12g02410 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG12g02410
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	50S ribosomal protein L33
Location	Cp4.1LG12 : 1661763 .. 1664271 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAATGTAATTACTTAGTTTTCTTTTTTTCCCGGCGCTTGGATAATTAAATACATACTCTGCTTCTGCTTGCGCGTCCGTTCTAGGGTTCTTCACAGCTTCTTCACGCACCTTCGAACTGTAGTAGTAAGTCTCTTACTTTTTCGATCTTTTCTATCTTCTAATCTCCTTTTTATCTTTCTTACCATTGATTCCTGCTTCTTGTTTTATTGTTAAATTGCTGAATGAAACACAACTCCGCAATCTTTTGACCAAATTATGTGCTTTCTGGAGTCGTTTTCGTAGATTTGCAATTTCGATCTGTTTATTGAATGTTGAAGGTCGCTTCAGAAGTTGTTTTCTGTTTAAGTACGTTTACGTTCGTGTGGTAGAAATTCAATTACCAAGTGACTGTTTAGGAGAATGTTATCTTAGAAATGTATACTACGTAGCCTATGAATGTTGGTTTTCCTGCATCTGATGTTCTTAAATCAGTTTTTGCCTTTTAGGATTTGCTTTTGAGGCTGAAATCATGAAATTGGTATAGTTAGGTTAAGGATATATTAACTTATTAGCCCAATTTTTTGAGACTAATAGTGATTTATAAGGAACTCTTGTAGTGTCATTTCTCACTTGATATGTTTTGTGAAACAAATTAATTCTTTGAATACGAACGTTTAGGAAAGTGTTGAAATATATTCAAATCATTTGATATACTCTAACAGGACAGCTTATTCAGAAGATGTTGTGTCTGGGTGATTTAACAAGTTGGACTAATTTGTGATACTTGTTCTATAGTTTTGCCACTCTCTTATTGAAAGTATTGGAAGTAGTCACCCTAATAGGTTCTCGTGTTCCATCTGCTAAAAATTGATGGTTTCTTTGTTGTTTTTATGCTTGTAATTATCTTTCAAAGGAGTCTTTCGGATTGCTTTTGATCCAGAGACCAGTAGACTTGGTATAGGTGGACTAAGTTGTGATTCATGTGAATATTGGTAAAAGATTAAAGGTTAAATTTATGAGTTTGCCCCGAACTTTCAATTTTGTGTTGATTTGACCATTAAACTTCAAAAATTATCTAACTCGTTCGTTAACTTTCAATTTTGAGTTCAATAGGTCCCTAAACTTTAAAAAGTGCTTAATAGGTTTTTATACTTTCAATTTTGTGTCTGATAGGTTCTTTAATTATTCAACGTCTATTCAGGGGCATAGATACAATATTGAAAGCTTAGGGTTCCTTTAGACATTAAAATCAATTTTATATCTATTAAATCAATTAATTTTAAATTTTTTTTTTAATATGTTGAAGATTCGAGGAGACCTATTAAACATTTCTTGTGAGATCTCACATTGATTGGGGAGGGGAACGAAACATTCTATATAAGGGTGTGGAAACCTTTCCTTACTAGACTCATTTTAGAACCTTGAGGGGAAGCTCAGAAGGGAGAGCCCAAAGAAGACAATATGTGTTAGCGGTAGGCGAGGAGGTTGAGCCCCGTAGAGGGGTGGACATGAGGTGGTGTGCCAGCAAGGATGCTAGGTCTCGAAGGGGGTGGATTGAGGGGTCCCATATTGATTAGAGAAAGGAACAAGTGTCAGCAAGGACGCCGGACCCCGAAGGGGAGTGGATTGTGAGATCCCACATCGGTTGGTGAGGAGAAAGGAACATTTTTTAAAACTGTGTGAAAACCTCTCTAGCAGACGCATTTTAAAATCTCGAGGGAAAATCCAGAAAGGAAGACCCAAAAAGAACAATATTTGCTAGCGGTGGGCTTGAGCTGTTACATTTCTAAAGTTCGGGAACTTATTAAACATAAAATTAAAAGTTTAAGAATCTATTACACTTCTTAAACTGAACCATGAACCGTACAAATATTAACTTGTACGTTTGGGGTGGTAGGAAGCCGGCCCTCTGTATAATTTCATTTAAGATGTCATCAGCATGGTTTAATTGCAAATAGCTCTGCATAAACATGTTTCCTTATATTCATTCTCTTCATGATAATTCTATATTATAGCACATCAAGAGCTAGCTTTCAAAATGACTTGATGAGATTTTTTCCCCTCTTTTTGGTGTGTTTGTTAGGAAATGGGTGACAAGAAAAAGAAAGCTACAATGTTCATCCGACTCGTATCAGCTGCTGGGACTGGATTCTTCTACGTCAAACGAAAGCCAACCAAAATAACAGAGAAGCTCGAGTTCCGAAAATACGATCCTCGGGTCAATCGACATGTCTTGTTTACAGAAGCGAAAATGAAGTGAAAGAAGGGAGGAAGTAAAGACCATCCTTTTAACTTGGACCTATTCTTCTTCCAAATGTTTAGACTCATGTTTCACATTGCTTGCTAGTCTCTCCCGTGGCTCATCAAAGCATGATTTTTGTGCATCAAATTCTATGGCTACGAATCGTTTGCCCCTTGATATCTTCTAGTCAGCTCTCTCTACTCATCTATTAAGCTTCTAGCAACTTAGACTTTTGACTCTTAATGGTTAATAAATTCCGAGTTTCGTGTCTATCTATTCTCTAAA

mRNA sequence

GAAAATGAAATGGGTGACAAGAAAAAGAAAGCTACAATGTTCATCCGACTCGTATCAGCTGCTGGGACTGGATTCTTCTACGTCAAACGAAAGCCAACCAAAATAACAGAGAAGCTCGAGTTCCGAAAATACGATCCTCGGGTCAATCGACATGTCTTGTTTACAGAAGCGAAAATGAAGTGAAAGAAGGGAGGAAGTAAAGACCATCCTTTTAACTTGGACCTATTCTTCTTCCAAATGTTTAGACTCATGTTTCACATTGCTTGCTAGTCTCTCCCGTGGCTCATCAAAGCATGATTTTTGTGCATCAAATTCTATGGCTACGAATCGTTTGCCCCTTGATATCTTCTAGTCAGCTCTCTCTACTCATCTATTAAGCTTCTAGCAACTTAGACTTTTGACTCTTAATGGTTAATAAATTCCGAGTTTCGTGTCTATCTATTCTCTAAA

Coding sequence (CDS)

GAAAATGAAATGGGTGACAAGAAAAAGAAAGCTACAATGTTCATCCGACTCGTATCAGCTGCTGGGACTGGATTCTTCTACGTCAAACGAAAGCCAACCAAAATAACAGAGAAGCTCGAGTTCCGAAAATACGATCCTCGGGTCAATCGACATGTCTTGTTTACAGAAGCGAAAATGAAGTGA

Protein sequence

ENEMGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK

Homology

[Close]

BLAST of Cp4.1LG12g02410 vs. Swiss-Prot
Match: RL33_MAGSA (50S ribosomal protein L33 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=rpmG PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 2.5e-12
Identity = 36/53 (67.92%), Postives = 42/53 (79.25%), Query Frame = 1


Query: 9  KKATMFIRLVSAAGTGFFYV-KRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 61
          K AT+ I+L+S AGTGFFYV K+ P K TEKLEFRKYDP V +HV F EAK+K
Sbjct: 3  KPATILIKLLSTAGTGFFYVAKKNPRKTTEKLEFRKYDPVVRKHVQFKEAKIK 55

[Close]

BLAST of Cp4.1LG12g02410 vs. Swiss-Prot
Match: RL33_RHOCS (50S ribosomal protein L33 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=rpmG PE=3 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 4.2e-12
Identity = 35/53 (66.04%), Postives = 43/53 (81.13%), Query Frame = 1


Query: 9  KKATMFIRLVSAAGTGFFYVKRK-PTKITEKLEFRKYDPRVNRHVLFTEAKMK 61
          K+ T+ I+LVS+A TGFFYVK+K P K TEKLEF+KYDP   +HV+F EAKMK
Sbjct: 3  KQNTVLIKLVSSADTGFFYVKKKNPRKTTEKLEFKKYDPVARKHVVFKEAKMK 55

[Close]

BLAST of Cp4.1LG12g02410 vs. Swiss-Prot
Match: RL33_RICB8 (50S ribosomal protein L33 OS=Rickettsia bellii (strain OSU 85-389) GN=rpmG PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 4.7e-11
Identity = 34/54 (62.96%), Postives = 39/54 (72.22%), Query Frame = 1


Query: 8  KKKATMFIRLVSAAGTGFFYVK-RKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 61
          KK   + +RLVS AGTGFF VK R P   TEKL FRKYDP+V +HVLF E K+K
Sbjct: 3  KKNKNILVRLVSTAGTGFFLVKKRNPKTQTEKLSFRKYDPKVRKHVLFKEEKIK 56

[Close]

BLAST of Cp4.1LG12g02410 vs. Swiss-Prot
Match: RL33_RICBR (50S ribosomal protein L33 OS=Rickettsia bellii (strain RML369-C) GN=rpmG PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 4.7e-11
Identity = 34/54 (62.96%), Postives = 39/54 (72.22%), Query Frame = 1


Query: 8  KKKATMFIRLVSAAGTGFFYVK-RKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 61
          KK   + +RLVS AGTGFF VK R P   TEKL FRKYDP+V +HVLF E K+K
Sbjct: 3  KKNKNILVRLVSTAGTGFFLVKKRNPKTQTEKLSFRKYDPKVRKHVLFKEEKIK 56

[Close]

BLAST of Cp4.1LG12g02410 vs. Swiss-Prot
Match: RL33_ORITI (50S ribosomal protein L33 OS=Orientia tsutsugamushi (strain Ikeda) GN=rpmG PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 4.7e-11
Identity = 33/54 (61.11%), Postives = 42/54 (77.78%), Query Frame = 1


Query: 8  KKKATMFIRLVSAAGTGFFYVK-RKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 61
          +KK  + ++LVS+AGTG F+VK R P   TEKL FRKYDP+V +HV FTEAK+K
Sbjct: 3  RKKKKVLVKLVSSAGTGVFWVKQRNPKTQTEKLSFRKYDPKVRKHVQFTEAKIK 56

[Close]

BLAST of Cp4.1LG12g02410 vs. TrEMBL
Match: A0A0A0LVW9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G538800 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 7.5e-24
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 1


Query: 4  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 61
          MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
Sbjct: 1  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 57

[Close]

BLAST of Cp4.1LG12g02410 vs. TrEMBL
Match: M5XFP4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014533mg PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 8.3e-23
Identity = 54/57 (94.74%), Postives = 57/57 (100.00%), Query Frame = 1


Query: 4  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 61
          MGDKKKKAT+FIRLVSAAGTGFFYVKRKPTK+TEKLEFRK+DPRVNRHVLFTEAKMK
Sbjct: 1  MGDKKKKATVFIRLVSAAGTGFFYVKRKPTKVTEKLEFRKFDPRVNRHVLFTEAKMK 57

[Close]

BLAST of Cp4.1LG12g02410 vs. TrEMBL
Match: A0A0B2SLG3_GLYSO (50S ribosomal protein L33 OS=Glycine soja GN=glysoja_039671 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 4.5e-21
Identity = 51/57 (89.47%), Postives = 54/57 (94.74%), Query Frame = 1


Query: 4  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 61
          MGDKKKKA MF++LVSAAGTGFFYVKRKP + TEKLEFRKYDPRVNRHVLFTEAKMK
Sbjct: 1  MGDKKKKAQMFVKLVSAAGTGFFYVKRKPRQFTEKLEFRKYDPRVNRHVLFTEAKMK 57

[Close]

BLAST of Cp4.1LG12g02410 vs. TrEMBL
Match: A0A0R0GCF5_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_14G127700 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 4.5e-21
Identity = 51/57 (89.47%), Postives = 54/57 (94.74%), Query Frame = 1


Query: 4  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 61
          MGDKKKKA MF++LVSAAGTGFFYVKRKP + TEKLEFRKYDPRVNRHVLFTEAKMK
Sbjct: 31 MGDKKKKAQMFVKLVSAAGTGFFYVKRKPRQFTEKLEFRKYDPRVNRHVLFTEAKMK 87

[Close]

BLAST of Cp4.1LG12g02410 vs. TrEMBL
Match: A0A151R6A5_CAJCA (50S ribosomal protein L33 OS=Cajanus cajan GN=KK1_040590 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 4.5e-21
Identity = 51/57 (89.47%), Postives = 54/57 (94.74%), Query Frame = 1


Query: 4  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 61
          MGDKKKKA MF++LVSAAGTGFFYVKRKP + TEKLEFRKYDPRVNRHVLFTEAKMK
Sbjct: 1  MGDKKKKAQMFVKLVSAAGTGFFYVKRKPRQFTEKLEFRKYDPRVNRHVLFTEAKMK 57

[Close]

BLAST of Cp4.1LG12g02410 vs. TAIR10
Match: AT3G06320.1 (AT3G06320.1 Ribosomal protein L33 family protein)

HSP 1 Score: 99.0 bits (245), Expect = 1.1e-21
Identity = 50/58 (86.21%), Postives = 52/58 (89.66%), Query Frame = 1


Query: 4  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTK-ITEKLEFRKYDPRVNRHVLFTEAKMK 61
          MGDK+KK  MFIRLVSAAGTGFFYVKRK TK + EKLEFRKYDPRVNRHVLFTE KMK
Sbjct: 1  MGDKRKKTFMFIRLVSAAGTGFFYVKRKSTKGLLEKLEFRKYDPRVNRHVLFTEQKMK 58

[Close]

BLAST of Cp4.1LG12g02410 vs. TAIR10
Match: AT5G18790.1 (AT5G18790.1 Ribosomal protein L33 family protein)

HSP 1 Score: 99.0 bits (245), Expect = 1.1e-21
Identity = 50/58 (86.21%), Postives = 52/58 (89.66%), Query Frame = 1


Query: 4  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTK-ITEKLEFRKYDPRVNRHVLFTEAKMK 61
          MGDK+KK  MFIRLVSAAGTGFFYVKRK TK + EKLEFRKYDPRVNRHVLFTE KMK
Sbjct: 1  MGDKRKKTFMFIRLVSAAGTGFFYVKRKSTKGLLEKLEFRKYDPRVNRHVLFTEQKMK 58

[Close]

BLAST of Cp4.1LG12g02410 vs. NCBI nr
Match: gi|449435542|ref|XP_004135554.1| (PREDICTED: 54S ribosomal protein L39, mitochondrial-like [Cucumis sativus])

HSP 1 Score: 117.1 bits (292), Expect = 1.1e-23
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 1


Query: 4  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 61
          MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
Sbjct: 1  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 57

[Close]

BLAST of Cp4.1LG12g02410 vs. NCBI nr
Match: gi|596194192|ref|XP_007223555.1| (hypothetical protein PRUPE_ppa014533mg [Prunus persica])

HSP 1 Score: 113.6 bits (283), Expect = 1.2e-22
Identity = 54/57 (94.74%), Postives = 57/57 (100.00%), Query Frame = 1


Query: 4  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 61
          MGDKKKKAT+FIRLVSAAGTGFFYVKRKPTK+TEKLEFRK+DPRVNRHVLFTEAKMK
Sbjct: 1  MGDKKKKATVFIRLVSAAGTGFFYVKRKPTKVTEKLEFRKFDPRVNRHVLFTEAKMK 57

[Close]

BLAST of Cp4.1LG12g02410 vs. NCBI nr
Match: gi|470121449|ref|XP_004296781.1| (PREDICTED: 54S ribosomal protein L39, mitochondrial [Fragaria vesca subsp. vesca])

HSP 1 Score: 109.0 bits (271), Expect = 2.9e-21
Identity = 51/57 (89.47%), Postives = 56/57 (98.25%), Query Frame = 1


Query: 4  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 61
          MGDKKKKAT+FIRLVSAAGTGFFYVK+KP+++ EKLEFRKYDPRVNRHVLFTEAKMK
Sbjct: 1  MGDKKKKATLFIRLVSAAGTGFFYVKKKPSRMVEKLEFRKYDPRVNRHVLFTEAKMK 57

[Close]

BLAST of Cp4.1LG12g02410 vs. NCBI nr
Match: gi|356563842|ref|XP_003550167.1| (PREDICTED: 50S ribosomal protein L33-like [Glycine max])

HSP 1 Score: 107.8 bits (268), Expect = 6.5e-21
Identity = 51/57 (89.47%), Postives = 54/57 (94.74%), Query Frame = 1


Query: 4  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 61
          MGDKKKKA MF++LVSAAGTGFFYVKRKP + TEKLEFRKYDPRVNRHVLFTEAKMK
Sbjct: 1  MGDKKKKAQMFVKLVSAAGTGFFYVKRKPRQFTEKLEFRKYDPRVNRHVLFTEAKMK 57

[Close]

BLAST of Cp4.1LG12g02410 vs. NCBI nr
Match: gi|955365372|ref|XP_014622782.1| (PREDICTED: 50S ribosomal protein L33-like isoform X1 [Glycine max])

HSP 1 Score: 107.8 bits (268), Expect = 6.5e-21
Identity = 51/57 (89.47%), Postives = 54/57 (94.74%), Query Frame = 1


Query: 4  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 61
          MGDKKKKA MF++LVSAAGTGFFYVKRKP + TEKLEFRKYDPRVNRHVLFTEAKMK
Sbjct: 31 MGDKKKKAQMFVKLVSAAGTGFFYVKRKPRQFTEKLEFRKYDPRVNRHVLFTEAKMK 87

The following BLAST results are available for this feature:

BLAST of Cp4.1LG12g02410 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL33_MAGSA	2.5e-12	67.92	50S ribosomal protein L33 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 70...	[more]
RL33_RHOCS	4.2e-12	66.04	50S ribosomal protein L33 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN...	[more]
RL33_RICB8	4.7e-11	62.96	50S ribosomal protein L33 OS=Rickettsia bellii (strain OSU 85-389) GN=rpmG PE=3 ...	[more]
RL33_RICBR	4.7e-11	62.96	50S ribosomal protein L33 OS=Rickettsia bellii (strain RML369-C) GN=rpmG PE=3 SV...	[more]
RL33_ORITI	4.7e-11	61.11	50S ribosomal protein L33 OS=Orientia tsutsugamushi (strain Ikeda) GN=rpmG PE=3 ...	[more]

BLAST of Cp4.1LG12g02410 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LVW9_CUCSA	7.5e-24	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G538800 PE=4 SV=1	[more]
M5XFP4_PRUPE	8.3e-23	94.74	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014533mg PE=4 SV=1	[more]
A0A0B2SLG3_GLYSO	4.5e-21	89.47	50S ribosomal protein L33 OS=Glycine soja GN=glysoja_039671 PE=4 SV=1	[more]
A0A0R0GCF5_SOYBN	4.5e-21	89.47	Uncharacterized protein OS=Glycine max GN=GLYMA_14G127700 PE=4 SV=1	[more]
A0A151R6A5_CAJCA	4.5e-21	89.47	50S ribosomal protein L33 OS=Cajanus cajan GN=KK1_040590 PE=4 SV=1	[more]

BLAST of Cp4.1LG12g02410 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G06320.1	1.1e-21	86.21	Ribosomal protein L33 family protein	[more]
AT5G18790.1	1.1e-21	86.21	Ribosomal protein L33 family protein	[more]

BLAST of Cp4.1LG12g02410 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449435542\|ref\|XP_004135554.1\|	1.1e-23	100.00	PREDICTED: 54S ribosomal protein L39, mitochondrial-like [Cucumis sativus]	[more]
gi\|596194192\|ref\|XP_007223555.1\|	1.2e-22	94.74	hypothetical protein PRUPE_ppa014533mg [Prunus persica]	[more]
gi\|470121449\|ref\|XP_004296781.1\|	2.9e-21	89.47	PREDICTED: 54S ribosomal protein L39, mitochondrial [Fragaria vesca subsp. vesca...	[more]
gi\|356563842\|ref\|XP_003550167.1\|	6.5e-21	89.47	PREDICTED: 50S ribosomal protein L33-like [Glycine max]	[more]
gi\|955365372\|ref\|XP_014622782.1\|	6.5e-21	89.47	PREDICTED: 50S ribosomal protein L33-like isoform X1 [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0005622	intracellular

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR011332	Ribosomal_zn-bd
IPR001705	Ribosomal_L33

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG12g02410.1	Cp4.1LG12g02410.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001705	Ribosomal protein L33	PFAM	PF00471	Ribosomal_L33	coord: 15..58 score: 6.2
IPR001705	Ribosomal protein L33	TIGRFAMs	TIGR01023	TIGR01023	coord: 7..60 score: 9.5
IPR011332	Zinc-binding ribosomal protein	unknown	SSF57829	Zn-binding ribosomal proteins	coord: 7..58 score: 5.8
None	No IPR available	PANTHER	PTHR15238	FAMILY NOT NAMED	coord: 1..60 score: 4.1
None	No IPR available	PANTHER	PTHR15238:SF10	SUBFAMILY NOT NAMED	coord: 1..60 score: 4.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG12g02410	CmaCh17G002960	Cucurbita maxima (Rimu)	cmacpeB371
Cp4.1LG12g02410	CmoCh17G002840	Cucurbita moschata (Rifu)	cmocpeB335
Cp4.1LG12g02410	Carg05478	Silver-seed gourd	carcpeB0099

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG12g02410	Cucumber (Gy14) v2	cgybcpeB303
Cp4.1LG12g02410	Cucumber (Gy14) v2	cgybcpeB724
Cp4.1LG12g02410	Melon (DHL92) v3.6.1	cpemedB138
Cp4.1LG12g02410	Melon (DHL92) v3.6.1	cpemedB170
Cp4.1LG12g02410	Silver-seed gourd	carcpeB0450
Cp4.1LG12g02410	Silver-seed gourd	carcpeB0857
Cp4.1LG12g02410	Silver-seed gourd	carcpeB1163
Cp4.1LG12g02410	Cucumber (Chinese Long) v3	cpecucB0154
Cp4.1LG12g02410	Cucumber (Chinese Long) v3	cpecucB0168
Cp4.1LG12g02410	Wax gourd	cpewgoB0180
Cp4.1LG12g02410	Wax gourd	cpewgoB0188
Cp4.1LG12g02410	Cucurbita pepo (Zucchini)	cpecpeB169
Cp4.1LG12g02410	Cucurbita pepo (Zucchini)	cpecpeB184
Cp4.1LG12g02410	Cucurbita pepo (Zucchini)	cpecpeB194
Cp4.1LG12g02410	Cucumber (Gy14) v1	cgycpeB0671
Cp4.1LG12g02410	Cucumber (Gy14) v1	cgycpeB0948
Cp4.1LG12g02410	Cucurbita maxima (Rimu)	cmacpeB262
Cp4.1LG12g02410	Cucurbita maxima (Rimu)	cmacpeB810
Cp4.1LG12g02410	Cucurbita maxima (Rimu)	cmacpeB895
Cp4.1LG12g02410	Cucurbita moschata (Rifu)	cmocpeB225
Cp4.1LG12g02410	Cucurbita moschata (Rifu)	cmocpeB833
Cp4.1LG12g02410	Wild cucumber (PI 183967)	cpecpiB133
Cp4.1LG12g02410	Wild cucumber (PI 183967)	cpecpiB146
Cp4.1LG12g02410	Wild cucumber (PI 183967)	cpecpiB155
Cp4.1LG12g02410	Cucumber (Chinese Long) v2	cpecuB132
Cp4.1LG12g02410	Cucumber (Chinese Long) v2	cpecuB144
Cp4.1LG12g02410	Cucumber (Chinese Long) v2	cpecuB153
Cp4.1LG12g02410	Bottle gourd (USVL1VR-Ls)	cpelsiB101
Cp4.1LG12g02410	Bottle gourd (USVL1VR-Ls)	cpelsiB118
Cp4.1LG12g02410	Watermelon (Charleston Gray)	cpewcgB139
Cp4.1LG12g02410	Watermelon (Charleston Gray)	cpewcgB144
Cp4.1LG12g02410	Watermelon (97103) v1	cpewmB152
Cp4.1LG12g02410	Watermelon (97103) v1	cpewmB161
Cp4.1LG12g02410	Melon (DHL92) v3.5.1	cpemeB112
Cp4.1LG12g02410	Melon (DHL92) v3.5.1	cpemeB140