Carg05478 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg05478
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	50S ribosomal protein L33-like
Location	Cucurbita_argyrosperma_scaffold_046 : 630013 .. 632676 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGAAGGTCGCTTCAGAAGTTGTTTTCTGTTTAAGTACGTTTACGTTCGTGTGGAAGAAATTCAATTACCAAGTGACTGTTTAGGAGAATGTTATCTTAGAAATGTATACTACGTAGCCTATGAATGTTGGTTTTCCTGCATCTGATGTTCTTGAATCAGTTTTTGCCTTTTCGGATTTGCTTTTGAGGCTGAAATCATGAAACTGGTATAGTTGGGTTAAGGATATATTAACTTCTTAGCCGAATTTTTTTAAGACTAATAGTGATTTATATAAGGAATTCTTGTAGTGTCATTTCTCACTTGTTATGTTTTGTGAAACAAATTAATTCTTTGAATACGAACGTTTAGGAAAGTGTTGAAAGATATTTAAATCATTAGATATACTCTAACAGGACAGCTTATGCAGAAGATTTTGGGTCTGGGTTGCAGAGGATTATTGGGAGAGGAGTCCCACATCGGCTAATTAAGGGATTGATCATGAGTTTATAAGTAAAGAATACATTACCATTGGTATAGGGTTGTTTGGGGAAGCCAAAAGCAAAATCATGAGAGTTAATGTTAAGTGGACAATATCACGGCATTGTGGAAGTTCGTGATTCCTAACATAGTATCATAGTCATGCCCTTAACTTAGCCATATCAATAGAATTTTCAAATGTCAAACAAAAAAGGAGACGAGCCTCGATTAGGGGGAGGCTGTTCGAGGGCTCCATAGGCCTCAGGGGAGGCTTTATGCTGTACTTTGTTCGAGGAGAGGATTGTTAAAGACTGTTGGGAGAGGAGTCCCACATCGGCTAATTAAGGGGTTGATCATAGATTTATAAGTAAGAAATACATTTTCATTGGTACAAGGCCTTTTGGGGTAACCAAAATAAAGCCATGAGAGATAATGCTCAAAGTGGATAATATCATACTACTGTTGAAGTTTCATACCATTGTGGAGGTTCGTGATTCGTAACATGGGTGATTTAACAAGTTGGACTAATTTGTGATACTTGTTCTATACTTTTGCCTCTCTCTCTCTCATCCAAAGTATTGGAAGTAGTCACTCTAATAGGTTCTGGCGTTCCATCTGCTAAAAATGGATGGTTTCTTTGTTGTTTTTATGCTTGTAATTATCTTTCAAAGGAGTCTTTCGGATTGCTTTTGATCCAGAGACCAGTAGACTTGGTATAGGTGGACTAAGTTGTGATTCATGTGGCCACCGTAAATATTGGTAAAAGATTAAAGGTTAAATCTATGAGTTTGCCCCGAAATTTCAATTCTGTGTTGATTTGACCATTAAACTTCAAAAATTATCTAACTCATTTGTTAATTACCCTAAACTTTATAAAGTGTTTAATAGGTTTTTATACTTTCAATTTTGGGTATGATAGGTTCTTTAATTATTCCACGTCTATTCAGGGGCATAGATACAATATTAAAAGCTTAGGGTTCGTTTAGACATAAAAATCAATCAATTTTATATCTAGTAAATCAATTAATTTTTAAAATTTTTAATATGTTGAAGATTCGAGGAGATCTATTAAACATTTCTTGTGAGATCCCATGTTGGTTGGAGAGGGGAACGAAACATTCTTTATAAGGGTGTGGAAACCTTTTCTTAGTGGACTCATTTTAGAACCTTGAGGGGAAGCTCAGAAGGGAAAGTCCAAAAAGGACAATATGTGTTAGCGGTAGGCTTGGGCTGTTACAAAAAGGGATCAGAGCCAGACACCGGCGATGTGCCAGCGAGGAGCCTGAGCCTCGAAGGGGGGTGGACACGAGATGGTGTGCCAGCAAGGATGCTAGGCCTCGAAGGGGTGGACTGAGGGGTCCCATATTGATTAGAGAAAGGAACAAGTGCCAGCAAGGACACCGGACCTCGAAGGGGAGTGGATTGTGAGATCTCACATCAGTTGGGGAGGAGAACGGAACATTTTTTAAAACTGTGTGAAAACCTCTCTCTAACGCATTTTAAAACCTTGCTATATTTGTTAGCGGTGGGCTTGGGCTGTTACATTTTTATCAGCATGGTTTAATTGCAAATAGCTCTGCATCAACTTGTTTACTTATATTCATTCTCTTCAGGATAATTCTATATTATAGCTCTTCAGGATAATTCTATATTATAGCACGTCAAGAGCTAGCTTTCAAAATGACTTGATGAGATTTTTTCCCCTCTTTTTGGTGTGTTTGTTAGGAAATGGGTGACAAGAAAAAGAAAGCTACAATGTTTATACGACTCGTATCAGCTGCTGGGACTGGATTCTTCTACGTCAAACGAAAGCCAACCAAAATAACAGAGAAGCTCGAGTTCCGAAAATACGATCCTCGGGTCAATCGACATGTCTTGTTTACAGAAGCGAAAATGAAGTGAAAGAAGGGAAGGAAGAAAAGACCATCCTTTTAACTTGGACCTATTCTTCTTCCAAATGTTTAGACTCATGTTTCACGTTGCTAGTCTCTCCCGTGGCTCATCAAATCATGATTTTTGTGCATCAAATTCTATAGCTACGAATCGTTTGCCCCTTGATATCTTCTAGTCAGCTCTCTCTACTCATCTATTAAGCTTCTAGCAACTTAGACTTTTGACTCTTAATGGTTAATAAATTTCGAGTTTCATGTCTATTTATTCTCTAAATTTTTAAATGGGTCTAATATATTTTGAATTTTATTTCT

mRNA sequence

ATGTTGAAGGTCGCTTCAGAAGAAATGGGTGACAAGAAAAAGAAAGCTACAATGTTTATACGACTCGTATCAGCTGCTGGGACTGGATTCTTCTACGTCAAACGAAAGCCAACCAAAATAACAGAGAAGCTCGAGTTCCGAAAATACGATCCTCGGGTCAATCGACATGTCTTGTTTACAGAAGCGAAAATGAAGTGAAAGAAGGGAAGGAAGAAAAGACCATCCTTTTAACTTGGACCTATTCTTCTTCCAAATGTTTAGACTCATGTTTCACGTTGCTAGTCTCTCCCGTGGCTCATCAAATCATGATTTTTGTGCATCAAATTCTATAGCTACGAATCGTTTGCCCCTTGATATCTTCTAGTCAGCTCTCTCTACTCATCTATTAAGCTTCTAGCAACTTAGACTTTTGACTCTTAATGGTTAATAAATTTCGAGTTTCATGTCTATTTATTCTCTAAATTTTTAAATGGGTCTAATATATTTTGAATTTTATTTCT

Coding sequence (CDS)

ATGTTGAAGGTCGCTTCAGAAGAAATGGGTGACAAGAAAAAGAAAGCTACAATGTTTATACGACTCGTATCAGCTGCTGGGACTGGATTCTTCTACGTCAAACGAAAGCCAACCAAAATAACAGAGAAGCTCGAGTTCCGAAAATACGATCCTCGGGTCAATCGACATGTCTTGTTTACAGAAGCGAAAATGAAGTGA

Protein sequence

MLKVASEEMGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK

Homology

[Close]

BLAST of Carg05478 vs. NCBI nr
Match: XP_004135554.1 (PREDICTED: 54S ribosomal protein L39, mitochondrial-like [Cucumis sativus] >XP_008445095.1 PREDICTED: 50S ribosomal protein L33-like [Cucumis melo] >XP_022138424.1 uncharacterized protein LOC111009599 [Momordica charantia] >XP_022958839.1 uncharacterized protein LOC111459991 [Cucurbita moschata] >XP_023006427.1 uncharacterized protein LOC111499157 [Cucurbita maxima] >XP_023548396.1 uncharacterized protein LOC111807061 [Cucurbita pepo subsp. pepo] >KGN65933.1 hypothetical protein Csa_1G538800 [Cucumis sativus])

HSP 1 Score: 116.3 bits (290), Expect = 3.8e-23
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 9  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 66
          MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
Sbjct: 1  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 57

[Close]

BLAST of Carg05478 vs. NCBI nr
Match: XP_022137876.1 (uncharacterized protein LOC111009198 [Momordica charantia])

HSP 1 Score: 115.5 bits (288), Expect = 6.6e-23
Identity = 56/57 (98.25%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 9  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 66
          MGDKKKKATMFIRLVSAAGTGFFYVKRKPTK+TEKLEFRKYDPRVNRHVLFTEAKMK
Sbjct: 1  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKLTEKLEFRKYDPRVNRHVLFTEAKMK 57

[Close]

BLAST of Carg05478 vs. NCBI nr
Match: XP_007223555.1 (uncharacterized protein LOC18791548 [Prunus persica] >XP_008223087.1 PREDICTED: 50S ribosomal protein L33 [Prunus mume] >XP_021808617.1 uncharacterized protein LOC110752307 [Prunus avium] >ONI28500.1 hypothetical protein PRUPE_1G144200 [Prunus persica] >ONI28501.1 hypothetical protein PRUPE_1G144200 [Prunus persica])

HSP 1 Score: 112.8 bits (281), Expect = 4.3e-22
Identity = 54/57 (94.74%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 9  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 66
          MGDKKKKAT+FIRLVSAAGTGFFYVKRKPTK+TEKLEFRK+DPRVNRHVLFTEAKMK
Sbjct: 1  MGDKKKKATVFIRLVSAAGTGFFYVKRKPTKVTEKLEFRKFDPRVNRHVLFTEAKMK 57

[Close]

BLAST of Carg05478 vs. NCBI nr
Match: PON80258.1 (Ribosomal protein [Parasponia andersonii])

HSP 1 Score: 109.4 bits (272), Expect = 4.7e-21
Identity = 52/65 (80.00%), Postives = 60/65 (92.31%), Query Frame = 0


Query: 1  MLKVASEEMGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFT 60
          + K   +EMGDKKKKAT+FIRLVSAAGTGFFYVK+KP+++ EKLEFRK+DPRVNRHVLFT
Sbjct: 2  LTKARLKEMGDKKKKATIFIRLVSAAGTGFFYVKKKPSRMVEKLEFRKFDPRVNRHVLFT 61

Query: 61 EAKMK 66
          EAKMK
Sbjct: 62 EAKMK 66

[Close]

BLAST of Carg05478 vs. NCBI nr
Match: POO02370.1 (Ribosomal protein [Trema orientalis])

HSP 1 Score: 108.6 bits (270), Expect = 8.0e-21
Identity = 51/59 (86.44%), Postives = 58/59 (98.31%), Query Frame = 0


Query: 7  EEMGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 66
          +EMGDKKKKAT+FIRLVSAAGTGFFYVK+KP+++ EKLEFRK+DPRVNRHVLFTEAKMK
Sbjct: 8  KEMGDKKKKATIFIRLVSAAGTGFFYVKKKPSRMVEKLEFRKFDPRVNRHVLFTEAKMK 66

[Close]

BLAST of Carg05478 vs. TAIR10
Match: AT3G06320.1 (Ribosomal protein L33 family protein)

HSP 1 Score: 98.2 bits (243), Expect = 2.0e-21
Identity = 50/58 (86.21%), Postives = 52/58 (89.66%), Query Frame = 0


Query: 9  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTK-ITEKLEFRKYDPRVNRHVLFTEAKMK 66
          MGDK+KK  MFIRLVSAAGTGFFYVKRK TK + EKLEFRKYDPRVNRHVLFTE KMK
Sbjct: 1  MGDKRKKTFMFIRLVSAAGTGFFYVKRKSTKGLLEKLEFRKYDPRVNRHVLFTEQKMK 58

[Close]

BLAST of Carg05478 vs. TAIR10
Match: AT5G18790.1 (Ribosomal protein L33 family protein)

HSP 1 Score: 98.2 bits (243), Expect = 2.0e-21
Identity = 50/58 (86.21%), Postives = 52/58 (89.66%), Query Frame = 0


Query: 9  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTK-ITEKLEFRKYDPRVNRHVLFTEAKMK 66
          MGDK+KK  MFIRLVSAAGTGFFYVKRK TK + EKLEFRKYDPRVNRHVLFTE KMK
Sbjct: 1  MGDKRKKTFMFIRLVSAAGTGFFYVKRKSTKGLLEKLEFRKYDPRVNRHVLFTEQKMK 58

[Close]

BLAST of Carg05478 vs. Swiss-Prot
Match: sp|Q2W1A2|RL33_MAGSA (50S ribosomal protein L33 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) OX=342108 GN=rpmG PE=3 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 4.6e-12
Identity = 36/53 (67.92%), Postives = 42/53 (79.25%), Query Frame = 0


Query: 14 KKATMFIRLVSAAGTGFFYV-KRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 66
          K AT+ I+L+S AGTGFFYV K+ P K TEKLEFRKYDP V +HV F EAK+K
Sbjct: 3  KPATILIKLLSTAGTGFFYVAKKNPRKTTEKLEFRKYDPVVRKHVQFKEAKIK 55

[Close]

BLAST of Carg05478 vs. Swiss-Prot
Match: sp|B6IN38|RL33_RHOCS (50S ribosomal protein L33 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) OX=414684 GN=rpmG PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 7.9e-12
Identity = 35/53 (66.04%), Postives = 43/53 (81.13%), Query Frame = 0


Query: 14 KKATMFIRLVSAAGTGFFYVKRK-PTKITEKLEFRKYDPRVNRHVLFTEAKMK 66
          K+ T+ I+LVS+A TGFFYVK+K P K TEKLEF+KYDP   +HV+F EAKMK
Sbjct: 3  KQNTVLIKLVSSADTGFFYVKKKNPRKTTEKLEFKKYDPVARKHVVFKEAKMK 55

[Close]

BLAST of Carg05478 vs. Swiss-Prot
Match: sp|B3CRY6|RL33_ORITI (50S ribosomal protein L33 OS=Orientia tsutsugamushi (strain Ikeda) OX=334380 GN=rpmG PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 8.8e-11
Identity = 33/54 (61.11%), Postives = 42/54 (77.78%), Query Frame = 0


Query: 13 KKKATMFIRLVSAAGTGFFYVK-RKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 66
          +KK  + ++LVS+AGTG F+VK R P   TEKL FRKYDP+V +HV FTEAK+K
Sbjct: 3  RKKKKVLVKLVSSAGTGVFWVKQRNPKTQTEKLSFRKYDPKVRKHVQFTEAKIK 56

[Close]

BLAST of Carg05478 vs. Swiss-Prot
Match: sp|A8GY80|RL33_RICB8 (50S ribosomal protein L33 OS=Rickettsia bellii (strain OSU 85-389) OX=391896 GN=rpmG PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 8.8e-11
Identity = 34/54 (62.96%), Postives = 39/54 (72.22%), Query Frame = 0


Query: 13 KKKATMFIRLVSAAGTGFFYV-KRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 66
          KK   + +RLVS AGTGFF V KR P   TEKL FRKYDP+V +HVLF E K+K
Sbjct: 3  KKNKNILVRLVSTAGTGFFLVKKRNPKTQTEKLSFRKYDPKVRKHVLFKEEKIK 56

[Close]

BLAST of Carg05478 vs. Swiss-Prot
Match: sp|Q1RGQ4|RL33_RICBR (50S ribosomal protein L33 OS=Rickettsia bellii (strain RML369-C) OX=336407 GN=rpmG PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 8.8e-11
Identity = 34/54 (62.96%), Postives = 39/54 (72.22%), Query Frame = 0


Query: 13 KKKATMFIRLVSAAGTGFFYV-KRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 66
          KK   + +RLVS AGTGFF V KR P   TEKL FRKYDP+V +HVLF E K+K
Sbjct: 3  KKNKNILVRLVSTAGTGFFLVKKRNPKTQTEKLSFRKYDPKVRKHVLFKEEKIK 56

[Close]

BLAST of Carg05478 vs. TrEMBL
Match: tr|A0A1S3BBV4|A0A1S3BBV4_CUCME (50S ribosomal protein L33-like OS=Cucumis melo OX=3656 GN=LOC103488236 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 2.5e-23
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 9  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 66
          MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
Sbjct: 1  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 57

[Close]

BLAST of Carg05478 vs. TrEMBL
Match: tr|A0A0A0LVW9|A0A0A0LVW9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G538800 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 2.5e-23
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 9  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 66
          MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
Sbjct: 1  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 57

[Close]

BLAST of Carg05478 vs. TrEMBL
Match: tr|M5XFP4|M5XFP4_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G144200 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 2.8e-22
Identity = 54/57 (94.74%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 9  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 66
          MGDKKKKAT+FIRLVSAAGTGFFYVKRKPTK+TEKLEFRK+DPRVNRHVLFTEAKMK
Sbjct: 1  MGDKKKKATVFIRLVSAAGTGFFYVKRKPTKVTEKLEFRKFDPRVNRHVLFTEAKMK 57

[Close]

BLAST of Carg05478 vs. TrEMBL
Match: tr|A0A2P5E3Z0|A0A2P5E3Z0_PARAD (Ribosomal protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_007080 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 3.1e-21
Identity = 52/65 (80.00%), Postives = 60/65 (92.31%), Query Frame = 0


Query: 1  MLKVASEEMGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFT 60
          + K   +EMGDKKKKAT+FIRLVSAAGTGFFYVK+KP+++ EKLEFRK+DPRVNRHVLFT
Sbjct: 2  LTKARLKEMGDKKKKATIFIRLVSAAGTGFFYVKKKPSRMVEKLEFRKFDPRVNRHVLFT 61

Query: 61 EAKMK 66
          EAKMK
Sbjct: 62 EAKMK 66

[Close]

BLAST of Carg05478 vs. TrEMBL
Match: tr|A0A2P5FX58|A0A2P5FX58_9ROSA (Ribosomal protein OS=Trema orientalis OX=63057 GN=TorRG33x02_021540 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 5.3e-21
Identity = 51/59 (86.44%), Postives = 58/59 (98.31%), Query Frame = 0


Query: 7  EEMGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 66
          +EMGDKKKKAT+FIRLVSAAGTGFFYVK+KP+++ EKLEFRK+DPRVNRHVLFTEAKMK
Sbjct: 8  KEMGDKKKKATIFIRLVSAAGTGFFYVKKKPSRMVEKLEFRKFDPRVNRHVLFTEAKMK 66

The following BLAST results are available for this feature:

BLAST of Carg05478 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004135554.1	3.8e-23	100.00	PREDICTED: 54S ribosomal protein L39, mitochondrial-like [Cucumis sativus] >XP_0...	[more]
XP_022137876.1	6.6e-23	98.25	uncharacterized protein LOC111009198 [Momordica charantia]	[more]
XP_007223555.1	4.3e-22	94.74	uncharacterized protein LOC18791548 [Prunus persica] >XP_008223087.1 PREDICTED: ...	[more]
PON80258.1	4.7e-21	80.00	Ribosomal protein [Parasponia andersonii]	[more]
POO02370.1	8.0e-21	86.44	Ribosomal protein [Trema orientalis]	[more]

BLAST of Carg05478 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G06320.1	2.0e-21	86.21	Ribosomal protein L33 family protein	[more]
AT5G18790.1	2.0e-21	86.21	Ribosomal protein L33 family protein	[more]

BLAST of Carg05478 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q2W1A2\|RL33_MAGSA	4.6e-12	67.92	50S ribosomal protein L33 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 70...	[more]
sp\|B6IN38\|RL33_RHOCS	7.9e-12	66.04	50S ribosomal protein L33 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) OX...	[more]
sp\|B3CRY6\|RL33_ORITI	8.8e-11	61.11	50S ribosomal protein L33 OS=Orientia tsutsugamushi (strain Ikeda) OX=334380 GN=...	[more]
sp\|A8GY80\|RL33_RICB8	8.8e-11	62.96	50S ribosomal protein L33 OS=Rickettsia bellii (strain OSU 85-389) OX=391896 GN=...	[more]
sp\|Q1RGQ4\|RL33_RICBR	8.8e-11	62.96	50S ribosomal protein L33 OS=Rickettsia bellii (strain RML369-C) OX=336407 GN=rp...	[more]

BLAST of Carg05478 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BBV4\|A0A1S3BBV4_CUCME	2.5e-23	100.00	50S ribosomal protein L33-like OS=Cucumis melo OX=3656 GN=LOC103488236 PE=4 SV=1	[more]
tr\|A0A0A0LVW9\|A0A0A0LVW9_CUCSA	2.5e-23	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G538800 PE=4 SV=1	[more]
tr\|M5XFP4\|M5XFP4_PRUPE	2.8e-22	94.74	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G144200 PE=4 SV=1	[more]
tr\|A0A2P5E3Z0\|A0A2P5E3Z0_PARAD	3.1e-21	80.00	Ribosomal protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_007080 PE=4 SV=...	[more]
tr\|A0A2P5FX58\|A0A2P5FX58_9ROSA	5.3e-21	86.44	Ribosomal protein OS=Trema orientalis OX=63057 GN=TorRG33x02_021540 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR011332	Ribosomal_zn-bd
IPR038584	L33_sf
IPR001705	Ribosomal_L33

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg05478-RA	Carg05478-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001705	Ribosomal protein L33	PFAM	PF00471	Ribosomal_L33	coord: 20..63 e-value: 8.0E-11 score: 42.1
IPR001705	Ribosomal protein L33	TIGRFAM	TIGR01023	TIGR01023	coord: 12..65 e-value: 1.3E-17 score: 61.9
IPR038584	Ribosomal protein L33 superfamily	GENE3D	G3DSA:2.20.28.120		coord: 10..65 e-value: 1.2E-25 score: 90.9
None	No IPR available	PANTHER	PTHR15238	FAMILY NOT NAMED	coord: 9..65
IPR011332	Zinc-binding ribosomal protein	SUPERFAMILY	SSF57829	Zn-binding ribosomal proteins	coord: 12..63

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg05478	CmaCh17G002960	Cucurbita maxima (Rimu)	carcmaB0091
Carg05478	CmoCh17G002840	Cucurbita moschata (Rifu)	carcmoB0097
Carg05478	Cp4.1LG12g02410	Cucurbita pepo (Zucchini)	carcpeB0099

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg05478	Silver-seed gourd	carcarB080
Carg05478	Silver-seed gourd	carcarB083
Carg05478	Silver-seed gourd	carcarB087
Carg05478	Cucumber (Gy14) v2	carcgybB0071
Carg05478	Cucumber (Gy14) v2	carcgybB0075
Carg05478	Cucumber (Gy14) v1	carcgyB0083
Carg05478	Cucumber (Gy14) v1	carcgyB0085
Carg05478	Cucurbita maxima (Rimu)	carcmaB0090
Carg05478	Cucurbita maxima (Rimu)	carcmaB0094
Carg05478	Cucurbita maxima (Rimu)	carcmaB0096
Carg05478	Cucurbita moschata (Rifu)	carcmoB0096
Carg05478	Cucurbita moschata (Rifu)	carcmoB0102
Carg05478	Cucurbita moschata (Rifu)	carcmoB0104
Carg05478	Cucurbita pepo (Zucchini)	carcpeB0104
Carg05478	Cucurbita pepo (Zucchini)	carcpeB0106
Carg05478	Cucurbita pepo (Zucchini)	carcpeB0109
Carg05478	Wild cucumber (PI 183967)	carcpiB0074
Carg05478	Wild cucumber (PI 183967)	carcpiB0078
Carg05478	Wild cucumber (PI 183967)	carcpiB0084
Carg05478	Cucumber (Chinese Long) v2	carcuB0071
Carg05478	Cucumber (Chinese Long) v2	carcuB0074
Carg05478	Cucumber (Chinese Long) v2	carcuB0080
Carg05478	Cucumber (Chinese Long) v3	carcucB0078
Carg05478	Cucumber (Chinese Long) v3	carcucB0082
Carg05478	Bottle gourd (USVL1VR-Ls)	carlsiB061
Carg05478	Bottle gourd (USVL1VR-Ls)	carlsiB065
Carg05478	Melon (DHL92) v3.5.1	carmeB0073
Carg05478	Melon (DHL92) v3.5.1	carmeB0067
Carg05478	Melon (DHL92) v3.6.1	carmedB0068
Carg05478	Melon (DHL92) v3.6.1	carmedB0074
Carg05478	Watermelon (Charleston Gray)	carwcgB0072
Carg05478	Watermelon (Charleston Gray)	carwcgB0073
Carg05478	Watermelon (97103) v1	carwmB0070
Carg05478	Watermelon (97103) v1	carwmB0073
Carg05478	Watermelon (97103) v2	carwmbB0069
Carg05478	Watermelon (97103) v2	carwmbB0070
Carg05478	Wax gourd	carwgoB0083
Carg05478	Wax gourd	carwgoB0086