Cp4.1LG11g09980 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG11g09980
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Auxin-responsive protein
Location	Cp4.1LG11 : 8353843 .. 8355302 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGAAGATCAAATAAATTTGTAGCGCGTGGTAAACACGCGCCAAGTAGGGAAGTGGGGAAATTATAGCTCCTTTTGCTTTAATCGCCTTCTATAAAATACGTTTGAGTGTTATTTGAGCTTAACAAGCACTTCATTTCTCCTCTGATTCTCTTCTGCACTTTCTGTTTGTTTCCCGAGAAAATAAAACACAACCCATCAGAAAATTCAAGAAACCCATTTCAGAGAAGGAAAAAAAATGGCGTTCGAGAAAGATCTCAACTTGGAAGCCACCGAGCTCCGATTAGGTCTGCCGGGAACTTCGCCTGACGATCAATCTTCTCCGATCAACCGAATCATCTCCAACAAAAGAGCTTTGCCGTCCGACGACCAGAACCCGCCGGAATCCGGCCGGGACGATAACTCCGATCTCACTAAATCCGCCCAAGAAAATCCCCCACCCACCAAGTAAGCACCTCATAATAAAAACTCAAACTTTATCTCTTATTTGAATAGAATTTGACGAAAAGATTTGAACTTTTCAGGGCACAAGTCGTGGGGTGGCCGCCGGTGAGATCGTTCAGAAAGAATTGTTTTCAAGCTAAGAAAAAAGATGAGGTGGCGGCGGCGGCGACGGCGGCCGGAGGGATGTTCATTAAAGTAAGCATGGATGGAGCTCCTTTTCTAAGGAAAGTTGATCTCAAAACCTATCAAGGATATCCTGAGCTTCTTCAAGCTTTAGAGAACATGTTCAAATTCTCTCTTGGTAATTTTCTTAAACATGGATCTCGACATCATAATCGCTTTAGAATGAAAATTTATTCAACTTTCGTCGTGTTCTTGCAGGTAAGTTTTGCGAGAGAGAAGGGTATAACGGGTCGGAATTTGTTCCAACTTATGAAGATAAAGATGGCGATTGGATGCTTGTCGGTGACGTTCCCTGGGAGTAAGTTTCAATCTCTACCTAAAATAACAAGCATGCAACTTTTTTCTAGTAGTTTCATACATATTTGTCACGACCTAAAAAAATCTTATCAACCCAATTCAACTGATACATCTGAGTTTGATTATGAACTTATTTTGATTGAATTAGCCGATAAATTTTCTTAAAATTAGATTGGATTACTGAACCAACCAGAATTTATCGTTTTTTAGATTCAACCCACGAACAATTTTATTATAACGGTGACGTTCGATAATTTTTTTCGTTGATCGTGAGATTCGGTTTAGGTTTAGGTTTTGGTTCGAGTAACTAACGGTGGGTTTATTCGAAAATTTGTAGAATGTTCATGGGGTCATGCAAGAAGCTTAGGATCATGAAGGGATCAGAAGCCAAAGGGTTGAGCTGTGGATCAGTGTGAAGAACAAAAAAGGAAGAAGAAAAGGGATCAGAGGGCACCCAAATGGCTCTCTTTTTTATGATCATCGGAAAAGCTGCCGAAGTTCATCACAGCCGCCGTGGATTCGCCGGCGACAGCTCCGA

mRNA sequence

TTGAAGATCAAATAAATTTGTAGCGCGTGGTAAACACGCGCCAAGTAGGGAAGTGGGGAAATTATAGCTCCTTTTGCTTTAATCGCCTTCTATAAAATACGTTTGAGTGTTATTTGAGCTTAACAAGCACTTCATTTCTCCTCTGATTCTCTTCTGCACTTTCTGTTTGTTTCCCGAGAAAATAAAACACAACCCATCAGAAAATTCAAGAAACCCATTTCAGAGAAGGAAAAAAAATGGCGTTCGAGAAAGATCTCAACTTGGAAGCCACCGAGCTCCGATTAGGTCTGCCGGGAACTTCGCCTGACGATCAATCTTCTCCGATCAACCGAATCATCTCCAACAAAAGAGCTTTGCCGTCCGACGACCAGAACCCGCCGGAATCCGGCCGGGACGATAACTCCGATCTCACTAAATCCGCCCAAGAAAATCCCCCACCCACCAACTGCCGAAGTTCATCACAGCCGCCGTGGATTCGCCGGCGACAGCTCCGA

Coding sequence (CDS)

ATGGCGTTCGAGAAAGATCTCAACTTGGAAGCCACCGAGCTCCGATTAGGTCTGCCGGGAACTTCGCCTGACGATCAATCTTCTCCGATCAACCGAATCATCTCCAACAAAAGAGCTTTGCCGTCCGACGACCAGAACCCGCCGGAATCCGGCCGGGACGATAACTCCGATCTCACTAAATCCGCCCAAGAAAATCCCCCACCCACCAACTGCCGAAGTTCATCACAGCCGCCGTGGATTCGCCGGCGACAGCTCCGA

Protein sequence

MAFEKDLNLEATELRLGLPGTSPDDQSSPINRIISNKRALPSDDQNPPESGRDDNSDLTKSAQENPPPTNCRSSSQPPWIRRRQLR

Homology

[Close]

BLAST of Cp4.1LG11g09980 vs. TrEMBL
Match: A0A0A0LID4_CUCSA (Auxin-responsive protein OS=Cucumis sativus GN=Csa_2G011420 PE=3 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 4.2e-20
Identity = 59/79 (74.68%), Postives = 63/79 (79.75%), Query Frame = 1


Query: 1  MAFEKDLNLEATELRLGLPGTSPDDQS-SPINRIISNKRALPSDDQNPPESGRDDNSDLT 60
          MAFEKDLNLEATELRLGLPGTSPDDQS SPINR  SNKRALPSDDQN  ES R+ NSD +
Sbjct: 1  MAFEKDLNLEATELRLGLPGTSPDDQSNSPINRTNSNKRALPSDDQNSSESRREINSDTS 60

Query: 61 KSAQENPPPTNCRSSSQPP 79
          K +QEN PPT  +    PP
Sbjct: 61 KCSQENTPPTKAQVVGWPP 79

[Close]

BLAST of Cp4.1LG11g09980 vs. TrEMBL
Match: Q9SSY1_CUCSA (Auxin-responsive protein (Fragment) OS=Cucumis sativus GN=CsIAA3 PE=2 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.0e-13
Identity = 48/68 (70.59%), Postives = 52/68 (76.47%), Query Frame = 1


Query: 12 TELRLGLPGTSPDDQS-SPINRIISNKRALPSDDQNPPESGRDDNSDLTKSAQENPPPTN 71
          TELRLGLPGTSPDDQS SPINR  SNKRALPSDDQN  ES R+ NSD +K +QEN PPT 
Sbjct: 1  TELRLGLPGTSPDDQSNSPINRTNSNKRALPSDDQNSSESRREINSDTSKCSQENTPPTK 60

Query: 72 CRSSSQPP 79
           +    PP
Sbjct: 61 AQVVGWPP 68

[Close]

BLAST of Cp4.1LG11g09980 vs. TrEMBL
Match: A0PH63_POPTO (Auxin-responsive protein OS=Populus tomentosa PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 4.5e-06
Identity = 41/86 (47.67%), Postives = 49/86 (56.98%), Query Frame = 1


Query: 1  MAFEKDLNLEATELRLGLPGTSP---DDQSSPINRIISNKRALPSDDQNPPESGRDDNS- 60
          M FE+DLNLEATELRLGLPGT+    + Q+   N   SNKR+LP  D N   +GR ++S 
Sbjct: 1  MEFERDLNLEATELRLGLPGTATQQLEKQTPSSNVTKSNKRSLP--DMNEDSAGRSESSS 60

Query: 61 ----DLTKSAQENPPPTNCRSSSQPP 79
              D     QE  PPT  R    PP
Sbjct: 61 VSSNDKKSDEQETAPPTETRVVGWPP 84

[Close]

BLAST of Cp4.1LG11g09980 vs. NCBI nr
Match: gi|659070637|ref|XP_008455974.1| (PREDICTED: auxin-induced protein 22D-like [Cucumis melo])

HSP 1 Score: 106.3 bits (264), Expect = 2.7e-20
Identity = 60/79 (75.95%), Postives = 63/79 (79.75%), Query Frame = 1


Query: 1  MAFEKDLNLEATELRLGLPGTSPDDQS-SPINRIISNKRALPSDDQNPPESGRDDNSDLT 60
          MAFEKDLNLEATELRLGLPGTSPDDQS SPINR  SNKRALPSDDQNP ES R+ NSD +
Sbjct: 1  MAFEKDLNLEATELRLGLPGTSPDDQSNSPINRTNSNKRALPSDDQNPLESRREINSDPS 60

Query: 61 KSAQENPPPTNCRSSSQPP 79
          K  QEN PPT  +    PP
Sbjct: 61 KCTQENTPPTKAQVVGWPP 79

[Close]

BLAST of Cp4.1LG11g09980 vs. NCBI nr
Match: gi|449442931|ref|XP_004139234.1| (PREDICTED: auxin-responsive protein IAA4 [Cucumis sativus])

HSP 1 Score: 105.1 bits (261), Expect = 6.0e-20
Identity = 59/79 (74.68%), Postives = 63/79 (79.75%), Query Frame = 1


Query: 1  MAFEKDLNLEATELRLGLPGTSPDDQS-SPINRIISNKRALPSDDQNPPESGRDDNSDLT 60
          MAFEKDLNLEATELRLGLPGTSPDDQS SPINR  SNKRALPSDDQN  ES R+ NSD +
Sbjct: 1  MAFEKDLNLEATELRLGLPGTSPDDQSNSPINRTNSNKRALPSDDQNSSESRREINSDTS 60

Query: 61 KSAQENPPPTNCRSSSQPP 79
          K +QEN PPT  +    PP
Sbjct: 61 KCSQENTPPTKAQVVGWPP 79

[Close]

BLAST of Cp4.1LG11g09980 vs. NCBI nr
Match: gi|6136834|dbj|BAA85822.1| (Aux/IAA protein [Cucumis sativus])

HSP 1 Score: 84.0 bits (206), Expect = 1.4e-13
Identity = 48/68 (70.59%), Postives = 52/68 (76.47%), Query Frame = 1


Query: 12 TELRLGLPGTSPDDQS-SPINRIISNKRALPSDDQNPPESGRDDNSDLTKSAQENPPPTN 71
          TELRLGLPGTSPDDQS SPINR  SNKRALPSDDQN  ES R+ NSD +K +QEN PPT 
Sbjct: 1  TELRLGLPGTSPDDQSNSPINRTNSNKRALPSDDQNSSESRREINSDTSKCSQENTPPTK 60

Query: 72 CRSSSQPP 79
           +    PP
Sbjct: 61 AQVVGWPP 68

[Close]

BLAST of Cp4.1LG11g09980 vs. NCBI nr
Match: gi|62125392|gb|AAX63768.1| (auxin-responsive protein IAA [Populus tomentosa])

HSP 1 Score: 58.5 bits (140), Expect = 6.5e-06
Identity = 41/86 (47.67%), Postives = 49/86 (56.98%), Query Frame = 1


Query: 1  MAFEKDLNLEATELRLGLPGTSP---DDQSSPINRIISNKRALPSDDQNPPESGRDDNS- 60
          M FE+DLNLEATELRLGLPGT+    + Q+   N   SNKR+LP  D N   +GR ++S 
Sbjct: 1  MEFERDLNLEATELRLGLPGTATQQLEKQTPSSNVTKSNKRSLP--DMNEDSAGRSESSS 60

Query: 61 ----DLTKSAQENPPPTNCRSSSQPP 79
              D     QE  PPT  R    PP
Sbjct: 61 VSSNDKKSDEQETAPPTETRVVGWPP 84

The following BLAST results are available for this feature:

BLAST of Cp4.1LG11g09980 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG11g09980 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LID4_CUCSA	4.2e-20	74.68	Auxin-responsive protein OS=Cucumis sativus GN=Csa_2G011420 PE=3 SV=1	[more]
Q9SSY1_CUCSA	1.0e-13	70.59	Auxin-responsive protein (Fragment) OS=Cucumis sativus GN=CsIAA3 PE=2 SV=1	[more]
A0PH63_POPTO	4.5e-06	47.67	Auxin-responsive protein OS=Populus tomentosa PE=2 SV=1	[more]

BLAST of Cp4.1LG11g09980 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG11g09980 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659070637\|ref\|XP_008455974.1\|	2.7e-20	75.95	PREDICTED: auxin-induced protein 22D-like [Cucumis melo]	[more]
gi\|449442931\|ref\|XP_004139234.1\|	6.0e-20	74.68	PREDICTED: auxin-responsive protein IAA4 [Cucumis sativus]	[more]
gi\|6136834\|dbj\|BAA85822.1\|	1.4e-13	70.59	Aux/IAA protein [Cucumis sativus]	[more]
gi\|62125392\|gb\|AAX63768.1\|	6.5e-06	47.67	auxin-responsive protein IAA [Populus tomentosa]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009734	auxin-activated signaling pathway
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG11g09980.1	Cp4.1LG11g09980.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG11g09980	Cucsa.133260	Cucumber (Gy14) v1	cgycpeB0351
Cp4.1LG11g09980	CmaCh12G011230	Cucurbita maxima (Rimu)	cmacpeB171
Cp4.1LG11g09980	CmaCh05G012020	Cucurbita maxima (Rimu)	cmacpeB767
Cp4.1LG11g09980	CmoCh05G012250	Cucurbita moschata (Rifu)	cmocpeB721
Cp4.1LG11g09980	Cla019806	Watermelon (97103) v1	cpewmB113
Cp4.1LG11g09980	Csa2G011420	Cucumber (Chinese Long) v2	cpecuB103
Cp4.1LG11g09980	MELO3C004381	Melon (DHL92) v3.5.1	cpemeB099
Cp4.1LG11g09980	ClCG02G016640	Watermelon (Charleston Gray)	cpewcgB104
Cp4.1LG11g09980	CSPI02G02990	Wild cucumber (PI 183967)	cpecpiB100
Cp4.1LG11g09980	Lsi11G004460	Bottle gourd (USVL1VR-Ls)	cpelsiB074
Cp4.1LG11g09980	MELO3C004381.2	Melon (DHL92) v3.6.1	cpemedB123
Cp4.1LG11g09980	CsaV3_2G004130	Cucumber (Chinese Long) v3	cpecucB0114
Cp4.1LG11g09980	Bhi06G001520	Wax gourd	cpewgoB0114
Cp4.1LG11g09980	CsGy2G003100	Cucumber (Gy14) v2	cgybcpeB168
Cp4.1LG11g09980	Carg17598	Silver-seed gourd	carcpeB1005
Cp4.1LG11g09980	Carg23452	Silver-seed gourd	carcpeB0410

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG11g09980	Cp4.1LG00g04230	Cucurbita pepo (Zucchini)	cpecpeB000

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG11g09980	Cucurbita pepo (Zucchini)	cpecpeB002
Cp4.1LG11g09980	Cucurbita pepo (Zucchini)	cpecpeB139
Cp4.1LG11g09980	Cucurbita moschata (Rifu)	cmocpeB147