Cp4.1LG11g09910 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG11g09910
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Pathogenesis-related protein PR-4
Location	Cp4.1LG11 : 8370383 .. 8371100 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CACAACAACAAAGAATGGATAAAGGAAGGTTTTTGATGCTATTGGCGTTGGCTTTGGGCATATTGAGCTTGGCTAATGCTCAAAGTGCCACCAATGTGAGGGCTACTTACCATTTGTATAACCCACAAGACATCAATTGGGACTACCTTAGGGCAAGTGTTTTTTGTGCAACATGGGACGCCAACAAGCCCTTGGAGTTTCGCCGCCGCTACGGTTGGACCGCCTTCTGTGGCCCTGTTGGCCCTCGTGGTCAAGCTTCCTGTGGTCGTTGTTTGAGGGTACGTAAATCTTCTCGTAATGAGTTTTTATGAAAGGAAGAATCGAAACATTGAAATTAAGAAAATTTGTGAAAATGTTTGCAGGTGACTAACACTGAAACAAAAGCTTCGGAAATAGTGAGAATTGTCGATCAATGCTCTAATGGAGGGCTGGATTTGGATGTGAATGTGTNTTTTGTGAAAATGTTTGCAGGTGACTAACACTGAAACAAAAGCTTCGGAAATCGTGAGAATTGTTGATCAATGCTCTAATGGAGGGCTGGATTTGGATGTGAATGTGTTTAGGAGAATCGATACTAATGGAAATGGATACCGTCGTGGCCATCTTATTGTCAACTATCAGTTTGTTAACTGCTAAGTTTCTTTCTCTCTGAAAGAAGGAGAAACGGAAAACTATGTTTTAATGAATAAACTATGAATAAAGTACGAACAGTTTAATA

mRNA sequence

CACAACAACAAAGAATGGATAAAGGAAGGTTTTTGATGCTATTGGCGTTGGCTTTGGGCATATTGAGCTTGGCTAATGCTCAAAGTGCCACCAATGTGAGGGCTACTTACCATTTGTATAACCCACAAGACATCAATTGGGACTACCTTAGGGCAAGTGTTTTTTGTGCAACATGGGACGCCAACAAGCCCTTGGAGTTTCGCCGCCGCTACGGTTGGACCGCCTTCTGTGGCCCTGTTGGCCCTCGTGGTCAAGCTTCCTGTGGTCGTTGTTTGAGGGTGACTAACACTGAAACAAAAGCTTCGGAAATAGTGACTAACACTGAAACAAAAGCTTCGGAAATCGTGAGAATTGTTGATCAATGCTCTAATGGAGGGCTGGATTTGGATGTGAATGTGTTTAGGAGAATCGATACTAATGGAAATGGATACCGTCGTGGCCATCTTATTGTCAACTATCAGTTTGTTAACTGCTAAGTTTCTTTCTCTCTGAAAGAAGGAGAAACGGAAAACTATGTTTTAATGAATAAACTATGAATAAAGTACGAACAGTTTAATA

Coding sequence (CDS)

ATGGATAAAGGAAGGTTTTTGATGCTATTGGCGTTGGCTTTGGGCATATTGAGCTTGGCTAATGCTCAAAGTGCCACCAATGTGAGGGCTACTTACCATTTGTATAACCCACAAGACATCAATTGGGACTACCTTAGGGCAAGTGTTTTTTGTGCAACATGGGACGCCAACAAGCCCTTGGAGTTTCGCCGCCGCTACGGTTGGACCGCCTTCTGTGGCCCTGTTGGCCCTCGTGGTCAAGCTTCCTGTGGTCGTTGTTTGAGGGTGACTAACACTGAAACAAAAGCTTCGGAAATAGTGACTAACACTGAAACAAAAGCTTCGGAAATCGTGAGAATTGTTGATCAATGCTCTAATGGAGGGCTGGATTTGGATGTGAATGTGTTTAGGAGAATCGATACTAATGGAAATGGATACCGTCGTGGCCATCTTATTGTCAACTATCAGTTTGTTAACTGCTAA

Protein sequence

MDKGRFLMLLALALGILSLANAQSATNVRATYHLYNPQDINWDYLRASVFCATWDANKPLEFRRRYGWTAFCGPVGPRGQASCGRCLRVTNTETKASEIVTNTETKASEIVRIVDQCSNGGLDLDVNVFRRIDTNGNGYRRGHLIVNYQFVNC

Homology

[Close]

BLAST of Cp4.1LG11g09910 vs. Swiss-Prot
Match: PRP2_SOLLC (Pathogenesis-related protein P2 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 2.3e-54
Identity = 100/138 (72.46%), Postives = 112/138 (81.16%), Query Frame = 1


Query: 16  ILSLANAQSATNVRATYHLYNPQDINWDYLRASVFCATWDANKPLEFRRRYGWTAFCGPV 75
           ++++A AQSATNVRATYHLYNPQ+INWD   ASV+CATWDA+KPLE+RRRYGWTAFCGP 
Sbjct: 17  MMAVAAAQSATNVRATYHLYNPQNINWDLRTASVYCATWDADKPLEWRRRYGWTAFCGPA 76

Query: 76  GPRGQASCGRCLRVTNTETKASEIVTNTETKASEIVRIVDQCSNGGLDLDVNVFRRIDTN 135
           GP GQASCGRCLRVTNT T   E V           RIVDQC NGGLDLDVNVF R+DTN
Sbjct: 77  GPTGQASCGRCLRVTNTGTGTQETV-----------RIVDQCRNGGLDLDVNVFNRLDTN 136

Query: 136 GNGYRRGHLIVNYQFVNC 154
           G GY+RG+L VNY+FVNC
Sbjct: 137 GLGYQRGNLNVNYEFVNC 143

[Close]

BLAST of Cp4.1LG11g09910 vs. Swiss-Prot
Match: PR4B_TOBAC (Pathogenesis-related protein PR-4B OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 1.9e-53
Identity = 98/138 (71.01%), Postives = 115/138 (83.33%), Query Frame = 1


Query: 16  ILSLANAQSATNVRATYHLYNPQDINWDYLRASVFCATWDANKPLEFRRRYGWTAFCGPV 75
           ++++A AQSATNVR+TYHLYNPQ+INWD   AS FCATWDA+KPL +R++YGWTAFCGP 
Sbjct: 19  MMAMAAAQSATNVRSTYHLYNPQNINWDLRAASAFCATWDADKPLAWRQKYGWTAFCGPA 78

Query: 76  GPRGQASCGRCLRVTNTETKASEIVTNTETKASEIVRIVDQCSNGGLDLDVNVFRRIDTN 135
           GPRGQ SCGRCLRVTN         T T T+A+  VRIVDQCSNGGLDLDVNVF ++DTN
Sbjct: 79  GPRGQDSCGRCLRVTN---------TGTGTQAT--VRIVDQCSNGGLDLDVNVFNQLDTN 138

Query: 136 GNGYRRGHLIVNYQFVNC 154
           G GY++GHLIVNY+FVNC
Sbjct: 139 GLGYQQGHLIVNYEFVNC 145

[Close]

BLAST of Cp4.1LG11g09910 vs. Swiss-Prot
Match: PR4A_TOBAC (Pathogenesis-related protein PR-4A OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 4.3e-53
Identity = 97/138 (70.29%), Postives = 113/138 (81.88%), Query Frame = 1


Query: 16  ILSLANAQSATNVRATYHLYNPQDINWDYLRASVFCATWDANKPLEFRRRYGWTAFCGPV 75
           ++++A AQSATNVR+TYHLYNPQ+INWD   AS FCATWDA+KPL +R++YGWTAFCGP 
Sbjct: 19  VMAMAAAQSATNVRSTYHLYNPQNINWDLRAASAFCATWDADKPLAWRQKYGWTAFCGPA 78

Query: 76  GPRGQASCGRCLRVTNTETKASEIVTNTETKASEIVRIVDQCSNGGLDLDVNVFRRIDTN 135
           GPRGQ SCGRCLRVTNT T        T+T     VRIVDQCSNGGLDLDVNVF ++DTN
Sbjct: 79  GPRGQDSCGRCLRVTNTGT-------GTQTT----VRIVDQCSNGGLDLDVNVFNQLDTN 138

Query: 136 GNGYRRGHLIVNYQFVNC 154
           G GY++GHL VNY+FVNC
Sbjct: 139 GVGYQQGHLTVNYEFVNC 145

[Close]

BLAST of Cp4.1LG11g09910 vs. Swiss-Prot
Match: WIN1_SOLTU (Wound-induced protein WIN1 OS=Solanum tuberosum GN=WIN1 PE=2 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 1.3e-49
Identity = 89/130 (68.46%), Postives = 103/130 (79.23%), Query Frame = 1


Query: 24  SATNVRATYHLYNPQDINWDYLRASVFCATWDANKPLEFRRRYGWTAFCGPVGPRGQASC 83
           SA NVRATYH+YNPQ++ WD    S +C+TWDANKPL +R++YGWTAFCGPVGPRG+ SC
Sbjct: 79  SAQNVRATYHIYNPQNVGWDLNAVSAYCSTWDANKPLSWRKKYGWTAFCGPVGPRGRDSC 138

Query: 84  GRCLRVTNTETKASEIVTNTETKASEIVRIVDQCSNGGLDLDVNVFRRIDTNGNGYRRGH 143
           G+CLRVTNT T A   V           RIVDQCSNGGLDLDVNVFR+IDT+GNG  +GH
Sbjct: 139 GKCLRVTNTRTGAQTTV-----------RIVDQCSNGGLDLDVNVFRQIDTDGNGNHQGH 197

Query: 144 LIVNYQFVNC 154
           LIVNYQFV+C
Sbjct: 199 LIVNYQFVDC 197

[Close]

BLAST of Cp4.1LG11g09910 vs. Swiss-Prot
Match: WIN2_SOLTU (Wound-induced protein WIN2 OS=Solanum tuberosum GN=WIN2 PE=2 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 1.2e-47
Identity = 86/130 (66.15%), Postives = 101/130 (77.69%), Query Frame = 1


Query: 24  SATNVRATYHLYNPQDINWDYLRASVFCATWDANKPLEFRRRYGWTAFCGPVGPRGQASC 83
           SA NVRATYH+YNPQ++ WD    S +C+TWDANKP  +R +YGWTAFCGPVGPRG+ SC
Sbjct: 78  SAQNVRATYHIYNPQNVGWDLNAVSAYCSTWDANKPYAWRSKYGWTAFCGPVGPRGRDSC 137

Query: 84  GRCLRVTNTETKASEIVTNTETKASEIVRIVDQCSNGGLDLDVNVFRRIDTNGNGYRRGH 143
           G+CLRVTNT T A   V           RIVDQCSNGGLDLD+NVF++IDT+G G ++GH
Sbjct: 138 GKCLRVTNTRTGAQTTV-----------RIVDQCSNGGLDLDINVFQQIDTDGVGNQQGH 196

Query: 144 LIVNYQFVNC 154
           LIVNYQFVNC
Sbjct: 198 LIVNYQFVNC 196

[Close]

BLAST of Cp4.1LG11g09910 vs. TrEMBL
Match: A0A0A0LIC8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G010390 PE=4 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 4.8e-67
Identity = 126/153 (82.35%), Postives = 134/153 (87.58%), Query Frame = 1


Query: 1   MDKGRFLMLLALALGILSLANAQSATNVRATYHLYNPQDINWDYLRASVFCATWDANKPL 60
           M KG  +M+L LALG+LSLANAQSATNVRATYHLYNPQDINWDYLRASVFCATWDA+KPL
Sbjct: 1   MGKGSIMMILVLALGVLSLANAQSATNVRATYHLYNPQDINWDYLRASVFCATWDADKPL 60

Query: 61  EFRRRYGWTAFCGPVGPRGQASCGRCLRVTNTETKASEIVTNTETKASEIVRIVDQCSNG 120
           E+RR+YGWTAFCGPVGPRG+ SCGRCLRVT           NTET ASEIVRIVDQC+NG
Sbjct: 61  EWRRQYGWTAFCGPVGPRGRDSCGRCLRVT-----------NTETGASEIVRIVDQCANG 120

Query: 121 GLDLDVNVFRRIDTNGNGYRRGHLIVNYQFVNC 154
           GLDLDVNVFRRIDTNGNG  RGHLIVNYQFVNC
Sbjct: 121 GLDLDVNVFRRIDTNGNGNLRGHLIVNYQFVNC 142

[Close]

BLAST of Cp4.1LG11g09910 vs. TrEMBL
Match: A0A0A0LG76_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G010380 PE=4 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 3.2e-63
Identity = 116/153 (75.82%), Postives = 130/153 (84.97%), Query Frame = 1


Query: 1   MDKGRFLMLLALALGILSLANAQSATNVRATYHLYNPQDINWDYLRASVFCATWDANKPL 60
           M+KG  +M+L LALG+LSLANAQSATNVRATYHLYNPQ+INWDY++ASV+CATWDANKPL
Sbjct: 1   MEKGSIVMILLLALGVLSLANAQSATNVRATYHLYNPQNINWDYMKASVYCATWDANKPL 60

Query: 61  EFRRRYGWTAFCGPVGPRGQASCGRCLRVTNTETKASEIVTNTETKASEIVRIVDQCSNG 120
           E+RRRY WTAFCGPVGPRGQASCGRCL+VTN ETKAS  V           RIVDQCSNG
Sbjct: 61  EWRRRYDWTAFCGPVGPRGQASCGRCLKVTNVETKASTTV-----------RIVDQCSNG 120

Query: 121 GLDLDVNVFRRIDTNGNGYRRGHLIVNYQFVNC 154
           GLDLD+  F+ IDTNGNGY+ GHL VNY+FVNC
Sbjct: 121 GLDLDIKPFKAIDTNGNGYKNGHLKVNYEFVNC 142

[Close]

BLAST of Cp4.1LG11g09910 vs. TrEMBL
Match: A0A0V0GWV1_SOLCH (Putative pathogenesis-related protein P2-like-like OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 3.3e-52
Identity = 99/138 (71.74%), Postives = 112/138 (81.16%), Query Frame = 1


Query: 16  ILSLANAQSATNVRATYHLYNPQDINWDYLRASVFCATWDANKPLEFRRRYGWTAFCGPV 75
           ++++A AQSATNVRATYHLYNPQ+INWD   AS +CATWDA+KPL +R+RYGWTAFCGP 
Sbjct: 17  MMAMAXAQSATNVRATYHLYNPQNINWDLRTASAYCATWDADKPLAWRQRYGWTAFCGPA 76

Query: 76  GPRGQASCGRCLRVTNTETKASEIVTNTETKASEIVRIVDQCSNGGLDLDVNVFRRIDTN 135
           GPRGQASCGRCLRVTNT T   E V           RIVDQCSNGGLDLDVNVF R+DTN
Sbjct: 77  GPRGQASCGRCLRVTNTGTGTQETV-----------RIVDQCSNGGLDLDVNVFNRLDTN 136

Query: 136 GNGYRRGHLIVNYQFVNC 154
           G GY+RG+L VNY+FVNC
Sbjct: 137 GLGYQRGNLNVNYEFVNC 143

[Close]

BLAST of Cp4.1LG11g09910 vs. TrEMBL
Match: K7VK61_SOLTU (Pathogenesis-related protein P2 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 4.3e-52
Identity = 99/138 (71.74%), Postives = 112/138 (81.16%), Query Frame = 1


Query: 16  ILSLANAQSATNVRATYHLYNPQDINWDYLRASVFCATWDANKPLEFRRRYGWTAFCGPV 75
           ++++A AQSATNVRATYHLYNPQ+INWD   AS +CATWDA+KPL +R+RYGWTAFCGP 
Sbjct: 17  MMAMAAAQSATNVRATYHLYNPQNINWDLRTASAYCATWDADKPLAWRQRYGWTAFCGPA 76

Query: 76  GPRGQASCGRCLRVTNTETKASEIVTNTETKASEIVRIVDQCSNGGLDLDVNVFRRIDTN 135
           GPRGQASCGRCLRVTNT T   E V           RIVDQCSNGGLDLDVNVF R+DTN
Sbjct: 77  GPRGQASCGRCLRVTNTGTGTQETV-----------RIVDQCSNGGLDLDVNVFNRLDTN 136

Query: 136 GNGYRRGHLIVNYQFVNC 154
           G GY+RG+L VNY+FVNC
Sbjct: 137 GLGYQRGNLNVNYEFVNC 143

[Close]

BLAST of Cp4.1LG11g09910 vs. TrEMBL
Match: M1BPP7_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400019437 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 9.7e-52
Identity = 99/135 (73.33%), Postives = 109/135 (80.74%), Query Frame = 1


Query: 19  LANAQSATNVRATYHLYNPQDINWDYLRASVFCATWDANKPLEFRRRYGWTAFCGPVGPR 78
           +A AQSATNVRATYHLYNPQ+INWD   AS +CATWDA+KPL +R+RYGWTAFCGP GPR
Sbjct: 1   MAAAQSATNVRATYHLYNPQNINWDLRTASAYCATWDADKPLAWRQRYGWTAFCGPAGPR 60

Query: 79  GQASCGRCLRVTNTETKASEIVTNTETKASEIVRIVDQCSNGGLDLDVNVFRRIDTNGNG 138
           GQASCGRCLRVTNT T   E V           RIVDQCSNGGLDLDVNVF R+DTNG G
Sbjct: 61  GQASCGRCLRVTNTGTGTQETV-----------RIVDQCSNGGLDLDVNVFNRLDTNGLG 120

Query: 139 YRRGHLIVNYQFVNC 154
           Y+RG+L VNY+FVNC
Sbjct: 121 YQRGNLNVNYEFVNC 124

[Close]

BLAST of Cp4.1LG11g09910 vs. TAIR10
Match: AT3G04720.1 (AT3G04720.1 pathogenesis-related 4)

HSP 1 Score: 183.3 bits (464), Expect = 1.1e-46
Identity = 85/131 (64.89%), Postives = 101/131 (77.10%), Query Frame = 1


Query: 23  QSATNVRATYHLYNPQDINWDYLRASVFCATWDANKPLEFRRRYGWTAFCGPVGPRGQAS 82
           +SA+NVRATYH YNP   NWD    S +C+TWDA+KP  +R +YGWTAFCGP GPRGQAS
Sbjct: 72  ESASNVRATYHFYNPAQNNWDLRAVSAYCSTWDADKPYAWRSKYGWTAFCGPAGPRGQAS 131

Query: 83  CGRCLRVTNTETKASEIVTNTETKASEIVRIVDQCSNGGLDLDVNVFRRIDTNGNGYRRG 142
           CG+CLRV NT T A+  VT         VRIVDQCSNGGLDLDV +F +IDT+G GY++G
Sbjct: 132 CGKCLRVKNTRTNAA--VT---------VRIVDQCSNGGLDLDVAMFNQIDTDGFGYQQG 191

Query: 143 HLIVNYQFVNC 154
           HLIV+YQFV+C
Sbjct: 192 HLIVDYQFVDC 191

[Close]

BLAST of Cp4.1LG11g09910 vs. NCBI nr
Match: gi|659070649|ref|XP_008456018.1| (PREDICTED: pathogenesis-related protein PR-4-like [Cucumis melo])

HSP 1 Score: 264.2 bits (674), Expect = 1.4e-67
Identity = 127/153 (83.01%), Postives = 134/153 (87.58%), Query Frame = 1


Query: 1   MDKGRFLMLLALALGILSLANAQSATNVRATYHLYNPQDINWDYLRASVFCATWDANKPL 60
           M+KG  +M+L LALG+LSLANAQSATNVRATYHLYNPQDINWDYLRASVFCATWDANKPL
Sbjct: 1   MEKGSIMMILVLALGVLSLANAQSATNVRATYHLYNPQDINWDYLRASVFCATWDANKPL 60

Query: 61  EFRRRYGWTAFCGPVGPRGQASCGRCLRVTNTETKASEIVTNTETKASEIVRIVDQCSNG 120
           E+RRRYGWTAFCGPVGPRG+ SCGRCLRVT           NTET ASEIVRIVDQC+NG
Sbjct: 61  EWRRRYGWTAFCGPVGPRGRDSCGRCLRVT-----------NTETGASEIVRIVDQCANG 120

Query: 121 GLDLDVNVFRRIDTNGNGYRRGHLIVNYQFVNC 154
           GLDLDVNVFRRIDTNGNG  RGHL VNYQFVNC
Sbjct: 121 GLDLDVNVFRRIDTNGNGNFRGHLTVNYQFVNC 142

[Close]

BLAST of Cp4.1LG11g09910 vs. NCBI nr
Match: gi|449442941|ref|XP_004139239.1| (PREDICTED: pathogenesis-related protein PR-4 [Cucumis sativus])

HSP 1 Score: 261.9 bits (668), Expect = 6.9e-67
Identity = 126/153 (82.35%), Postives = 134/153 (87.58%), Query Frame = 1


Query: 1   MDKGRFLMLLALALGILSLANAQSATNVRATYHLYNPQDINWDYLRASVFCATWDANKPL 60
           M KG  +M+L LALG+LSLANAQSATNVRATYHLYNPQDINWDYLRASVFCATWDA+KPL
Sbjct: 1   MGKGSIMMILVLALGVLSLANAQSATNVRATYHLYNPQDINWDYLRASVFCATWDADKPL 60

Query: 61  EFRRRYGWTAFCGPVGPRGQASCGRCLRVTNTETKASEIVTNTETKASEIVRIVDQCSNG 120
           E+RR+YGWTAFCGPVGPRG+ SCGRCLRVT           NTET ASEIVRIVDQC+NG
Sbjct: 61  EWRRQYGWTAFCGPVGPRGRDSCGRCLRVT-----------NTETGASEIVRIVDQCANG 120

Query: 121 GLDLDVNVFRRIDTNGNGYRRGHLIVNYQFVNC 154
           GLDLDVNVFRRIDTNGNG  RGHLIVNYQFVNC
Sbjct: 121 GLDLDVNVFRRIDTNGNGNLRGHLIVNYQFVNC 142

[Close]

BLAST of Cp4.1LG11g09910 vs. NCBI nr
Match: gi|449442937|ref|XP_004139237.1| (PREDICTED: pathogenesis-related protein PR-4A-like [Cucumis sativus])

HSP 1 Score: 249.2 bits (635), Expect = 4.6e-63
Identity = 116/153 (75.82%), Postives = 130/153 (84.97%), Query Frame = 1


Query: 1   MDKGRFLMLLALALGILSLANAQSATNVRATYHLYNPQDINWDYLRASVFCATWDANKPL 60
           M+KG  +M+L LALG+LSLANAQSATNVRATYHLYNPQ+INWDY++ASV+CATWDANKPL
Sbjct: 1   MEKGSIVMILLLALGVLSLANAQSATNVRATYHLYNPQNINWDYMKASVYCATWDANKPL 60

Query: 61  EFRRRYGWTAFCGPVGPRGQASCGRCLRVTNTETKASEIVTNTETKASEIVRIVDQCSNG 120
           E+RRRY WTAFCGPVGPRGQASCGRCL+VTN ETKAS  V           RIVDQCSNG
Sbjct: 61  EWRRRYDWTAFCGPVGPRGQASCGRCLKVTNVETKASTTV-----------RIVDQCSNG 120

Query: 121 GLDLDVNVFRRIDTNGNGYRRGHLIVNYQFVNC 154
           GLDLD+  F+ IDTNGNGY+ GHL VNY+FVNC
Sbjct: 121 GLDLDIKPFKAIDTNGNGYKNGHLKVNYEFVNC 142

[Close]

BLAST of Cp4.1LG11g09910 vs. NCBI nr
Match: gi|659070651|ref|XP_008456027.1| (PREDICTED: pathogenesis-related protein PR-4-like [Cucumis melo])

HSP 1 Score: 219.5 bits (558), Expect = 3.9e-54
Identity = 104/153 (67.97%), Postives = 120/153 (78.43%), Query Frame = 1


Query: 1   MDKGRFLMLLALALGILSLANAQSATNVRATYHLYNPQDINWDYLRASVFCATWDANKPL 60
           M+K   +M+L LALG+LSLANAQSATNV ATYHLYNPQ INWDY +A+V+CATWDANKP 
Sbjct: 1   MEKESIVMILLLALGVLSLANAQSATNVTATYHLYNPQIINWDYTKANVYCATWDANKPF 60

Query: 61  EFRRRYGWTAFCGPVGPRGQASCGRCLRVTNTETKASEIVTNTETKASEIVRIVDQCSNG 120
           E+R RYGWTAFCGPVGP GQASCGRC +VTN E           TKAS IVRIVD+CS G
Sbjct: 61  EWRSRYGWTAFCGPVGPHGQASCGRCTKVTNAE-----------TKASTIVRIVDECSYG 120

Query: 121 GLDLDVNVFRRIDTNGNGYRRGHLIVNYQFVNC 154
           G DLDV VF R+DT+G G   G ++VNY+FV+C
Sbjct: 121 GFDLDVGVFMRLDTDGIGSTNGFIMVNYEFVDC 142

[Close]

BLAST of Cp4.1LG11g09910 vs. NCBI nr
Match: gi|350538353|ref|NP_001234083.1| (pathogenesis-related protein P2 precursor [Solanum lycopersicum])

HSP 1 Score: 213.0 bits (541), Expect = 3.7e-52
Identity = 100/138 (72.46%), Postives = 112/138 (81.16%), Query Frame = 1


Query: 16  ILSLANAQSATNVRATYHLYNPQDINWDYLRASVFCATWDANKPLEFRRRYGWTAFCGPV 75
           ++++A AQSATNVRATYHLYNPQ+INWD   ASV+CATWDA+KPLE+RRRYGWTAFCGP 
Sbjct: 17  MMAVAAAQSATNVRATYHLYNPQNINWDLRTASVYCATWDADKPLEWRRRYGWTAFCGPA 76

Query: 76  GPRGQASCGRCLRVTNTETKASEIVTNTETKASEIVRIVDQCSNGGLDLDVNVFRRIDTN 135
           GP GQASCGRCLRVTNT T   E V           RIVDQC NGGLDLDVNVF R+DTN
Sbjct: 77  GPTGQASCGRCLRVTNTGTGTQETV-----------RIVDQCRNGGLDLDVNVFNRLDTN 136

Query: 136 GNGYRRGHLIVNYQFVNC 154
           G GY+RG+L VNY+FVNC
Sbjct: 137 GLGYQRGNLNVNYEFVNC 143

The following BLAST results are available for this feature:

BLAST of Cp4.1LG11g09910 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PRP2_SOLLC	2.3e-54	72.46	Pathogenesis-related protein P2 OS=Solanum lycopersicum PE=2 SV=1	[more]
PR4B_TOBAC	1.9e-53	71.01	Pathogenesis-related protein PR-4B OS=Nicotiana tabacum PE=2 SV=1	[more]
PR4A_TOBAC	4.3e-53	70.29	Pathogenesis-related protein PR-4A OS=Nicotiana tabacum PE=2 SV=1	[more]
WIN1_SOLTU	1.3e-49	68.46	Wound-induced protein WIN1 OS=Solanum tuberosum GN=WIN1 PE=2 SV=1	[more]
WIN2_SOLTU	1.2e-47	66.15	Wound-induced protein WIN2 OS=Solanum tuberosum GN=WIN2 PE=2 SV=1	[more]

BLAST of Cp4.1LG11g09910 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LIC8_CUCSA	4.8e-67	82.35	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G010390 PE=4 SV=1	[more]
A0A0A0LG76_CUCSA	3.2e-63	75.82	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G010380 PE=4 SV=1	[more]
A0A0V0GWV1_SOLCH	3.3e-52	71.74	Putative pathogenesis-related protein P2-like-like OS=Solanum chacoense PE=4 SV=...	[more]
K7VK61_SOLTU	4.3e-52	71.74	Pathogenesis-related protein P2 OS=Solanum tuberosum PE=2 SV=1	[more]
M1BPP7_SOLTU	9.7e-52	73.33	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400019437 PE=4 SV=1	[more]

BLAST of Cp4.1LG11g09910 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G04720.1	1.1e-46	64.89	pathogenesis-related 4	[more]

BLAST of Cp4.1LG11g09910 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659070649\|ref\|XP_008456018.1\|	1.4e-67	83.01	PREDICTED: pathogenesis-related protein PR-4-like [Cucumis melo]	[more]
gi\|449442941\|ref\|XP_004139239.1\|	6.9e-67	82.35	PREDICTED: pathogenesis-related protein PR-4 [Cucumis sativus]	[more]
gi\|449442937\|ref\|XP_004139237.1\|	4.6e-63	75.82	PREDICTED: pathogenesis-related protein PR-4A-like [Cucumis sativus]	[more]
gi\|659070651\|ref\|XP_008456027.1\|	3.9e-54	67.97	PREDICTED: pathogenesis-related protein PR-4-like [Cucumis melo]	[more]
gi\|350538353\|ref\|NP_001234083.1\|	3.7e-52	72.46	pathogenesis-related protein P2 precursor [Solanum lycopersicum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0050832	defense response to fungus
GO:0042742	defense response to bacterium

Vocabulary: **INTERPRO**
Term	Definition
IPR018226	Barwin_CS
IPR009009	RlpA-like_DPBB
IPR001153	Barwin_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042742	defense response to bacterium
biological_process	GO:0050832	defense response to fungus
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005618	cell wall
cellular_component	GO:0005576	extracellular region
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0008061	chitin binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG11g09910.1	Cp4.1LG11g09910.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001153	Barwin domain	PRODOM	PD004535		coord: 31..153 score: 1.0
IPR001153	Barwin domain	PRINTS	PR00602	BARWIN	coord: 77..95 score: 7.1E-16coord: 58..76 score: 7.1
IPR001153	Barwin domain	PFAM	PF00967	Barwin	coord: 24..100 score: 7.4
IPR001153	Barwin domain	PROFILE	PS51174	BARWIN_3	coord: 23..153 score: 78
IPR009009	RlpA-like protein, double-psi beta-barrel domain	GENE3D	G3DSA:2.40.40.10		coord: 23..153 score: 5.3
IPR009009	RlpA-like protein, double-psi beta-barrel domain	unknown	SSF50685	Barwin-like endoglucanases	coord: 23..153 score: 6.28
IPR018226	Barwin, conserved site	PROSITE	PS00771	BARWIN_1	coord: 83..91 scor
IPR018226	Barwin, conserved site	PROSITE	PS00772	BARWIN_2	coord: 146..153 scor
None	No IPR available	PANTHER	PTHR22595	CHITINASE-RELATED	coord: 1..153 score: 1.0
None	No IPR available	PANTHER	PTHR22595:SF62	HEVEIN-LIKE PREPROPROTEIN	coord: 1..153 score: 1.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG11g09910	Cucsa.133190	Cucumber (Gy14) v1	cgycpeB0351
Cp4.1LG11g09910	CmaCh05G012040	Cucurbita maxima (Rimu)	cmacpeB767
Cp4.1LG11g09910	CmoCh05G012270	Cucurbita moschata (Rifu)	cmocpeB721
Cp4.1LG11g09910	Cla019803	Watermelon (97103) v1	cpewmB113
Cp4.1LG11g09910	Csa2G010340	Cucumber (Chinese Long) v2	cpecuB103
Cp4.1LG11g09910	MELO3C004385	Melon (DHL92) v3.5.1	cpemeB099
Cp4.1LG11g09910	ClCG02G016680	Watermelon (Charleston Gray)	cpewcgB104
Cp4.1LG11g09910	CSPI02G02890	Wild cucumber (PI 183967)	cpecpiB100
Cp4.1LG11g09910	Lsi11G004390	Bottle gourd (USVL1VR-Ls)	cpelsiB074
Cp4.1LG11g09910	MELO3C004385.2	Melon (DHL92) v3.6.1	cpemedB123
Cp4.1LG11g09910	CsaV3_2G004040	Cucumber (Chinese Long) v3	cpecucB0114
Cp4.1LG11g09910	Bhi06G001525	Wax gourd	cpewgoB0114
Cp4.1LG11g09910	CsGy2G003010	Cucumber (Gy14) v2	cgybcpeB168
Cp4.1LG11g09910	Carg22986	Silver-seed gourd	carcpeB1494

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG11g09910	Cp4.1LG00g04240	Cucurbita pepo (Zucchini)	cpecpeB000

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG11g09910	Cucurbita pepo (Zucchini)	cpecpeB002
Cp4.1LG11g09910	Cucurbita pepo (Zucchini)	cpecpeB139
Cp4.1LG11g09910	Cucurbita maxima (Rimu)	cmacpeB171
Cp4.1LG11g09910	Cucurbita moschata (Rifu)	cmocpeB147
Cp4.1LG11g09910	Silver-seed gourd	carcpeB1005