CmoCh05G012270 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh05G012270
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Wound-induced protein
Location	Cmo_Chr05 : 9599597 .. 9600197 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATAAACGAAGCTTTTTGATGCTATTGGCGTTGGTTTTGGGCATATTGAGCTTGGCTAATGCTCAAAGTGCCAACAATGTGAGGGCTACTTACCATTTGTACAACCCACAAGACATCAATTGGGACTACCTTAGGGCAAGTGTTTATTGCGCAACATGGGACGCCAACAAGCCCTTGGAGTTTCGCCGCCGCTACGGTTGGACCGCCTTCTGTGGCCCTGTTGGCCCTCGTGGTCAAGCTTCCTGTGGTCGTTGTTTGAGGGTAAGTAAATCTTCTCGTAATGAGTTTTTATGAAAGGAGAAATAGAAACATTGAAATTAAGAAAATTTGTGAAAATGTTTGCAGGTGACTAACACTGAAACAAGAGCTTCGGAAATAGTGAGAATTGTCGATCAATGCTCTAATGGAGGGCTGGATTTGGATGTGAACGTGTTTAGGAGAATCGATACTAACAGAAATGGATACCAGCGTGGCCATCTTATTGTCAACTATGAGTTTGTTAACTGCTAAGTTTCTTTCTTTCGGAAAGAAGGGAGAAACGAAAAACTATGTTTTAATGAATAAACTATGAATAAAGTACGAACAGTTTAATATATCG

mRNA sequence

ATGGATAAACGAAGCTTTTTGATGCTATTGGCGTTGGTTTTGGGCATATTGAGCTTGGCTAATGCTCAAAGTGCCAACAATGTGAGGGCTACTTACCATTTGTACAACCCACAAGACATCAATTGGGACTACCTTAGGGCAAGTGTTTATTGCGCAACATGGGACGCCAACAAGCCCTTGGAGTTTCGCCGCCGCTACGGTTGGACCGCCTTCTGTGGCCCTGTTGGCCCTCGTGGTCAAGCTTCCTGTGGTCGTTGTTTGAGGGTGACTAACACTGAAACAAGAGCTTCGGAAATAGTGAGAATTGTCGATCAATGCTCTAATGGAGGGCTGGATTTGGATGTGAACGTGTTTAGGAGAATCGATACTAACAGAAATGGATACCAGCGTGGCCATCTTATTGTCAACTATGAGTTTGTTAACTGCTAAGTTTCTTTCTTTCGGAAAGAAGGGAGAAACGAAAAACTATGTTTTAATGAATAAACTATGAATAAAGTACGAACAGTTTAATATATCG

Coding sequence (CDS)

ATGGATAAACGAAGCTTTTTGATGCTATTGGCGTTGGTTTTGGGCATATTGAGCTTGGCTAATGCTCAAAGTGCCAACAATGTGAGGGCTACTTACCATTTGTACAACCCACAAGACATCAATTGGGACTACCTTAGGGCAAGTGTTTATTGCGCAACATGGGACGCCAACAAGCCCTTGGAGTTTCGCCGCCGCTACGGTTGGACCGCCTTCTGTGGCCCTGTTGGCCCTCGTGGTCAAGCTTCCTGTGGTCGTTGTTTGAGGGTGACTAACACTGAAACAAGAGCTTCGGAAATAGTGAGAATTGTCGATCAATGCTCTAATGGAGGGCTGGATTTGGATGTGAACGTGTTTAGGAGAATCGATACTAACAGAAATGGATACCAGCGTGGCCATCTTATTGTCAACTATGAGTTTGTTAACTGCTAA

Homology

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BLAST of CmoCh05G012270 vs. Swiss-Prot
Match: PRP2_SOLLC (Pathogenesis-related protein P2 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 6.0e-57
Identity = 101/127 (79.53%), Postives = 110/127 (86.61%), Query Frame = 1


Query: 16  ILSLANAQSANNVRATYHLYNPQDINWDYLRASVYCATWDANKPLEFRRRYGWTAFCGPV 75
           ++++A AQSA NVRATYHLYNPQ+INWD   ASVYCATWDA+KPLE+RRRYGWTAFCGP 
Sbjct: 17  MMAVAAAQSATNVRATYHLYNPQNINWDLRTASVYCATWDADKPLEWRRRYGWTAFCGPA 76

Query: 76  GPRGQASCGRCLRVTNTETRASEIVRIVDQCSNGGLDLDVNVFRRIDTNRNGYQRGHLIV 135
           GP GQASCGRCLRVTNT T   E VRIVDQC NGGLDLDVNVF R+DTN  GYQRG+L V
Sbjct: 77  GPTGQASCGRCLRVTNTGTGTQETVRIVDQCRNGGLDLDVNVFNRLDTNGLGYQRGNLNV 136

Query: 136 NYEFVNC 143
           NYEFVNC
Sbjct: 137 NYEFVNC 143

[Close]

BLAST of CmoCh05G012270 vs. Swiss-Prot
Match: PR4B_TOBAC (Pathogenesis-related protein PR-4B OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 1.2e-54
Identity = 96/133 (72.18%), Postives = 112/133 (84.21%), Query Frame = 1


Query: 10  LALVLGILSLANAQSANNVRATYHLYNPQDINWDYLRASVYCATWDANKPLEFRRRYGWT 69
           L ++  ++++A AQSA NVR+TYHLYNPQ+INWD   AS +CATWDA+KPL +R++YGWT
Sbjct: 13  LLIMSVMMAMAAAQSATNVRSTYHLYNPQNINWDLRAASAFCATWDADKPLAWRQKYGWT 72

Query: 70  AFCGPVGPRGQASCGRCLRVTNTETRASEIVRIVDQCSNGGLDLDVNVFRRIDTNRNGYQ 129
           AFCGP GPRGQ SCGRCLRVTNT T     VRIVDQCSNGGLDLDVNVF ++DTN  GYQ
Sbjct: 73  AFCGPAGPRGQDSCGRCLRVTNTGTGTQATVRIVDQCSNGGLDLDVNVFNQLDTNGLGYQ 132

Query: 130 RGHLIVNYEFVNC 143
           +GHLIVNYEFVNC
Sbjct: 133 QGHLIVNYEFVNC 145

[Close]

BLAST of CmoCh05G012270 vs. Swiss-Prot
Match: PR4A_TOBAC (Pathogenesis-related protein PR-4A OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 1.6e-54
Identity = 95/133 (71.43%), Postives = 111/133 (83.46%), Query Frame = 1


Query: 10  LALVLGILSLANAQSANNVRATYHLYNPQDINWDYLRASVYCATWDANKPLEFRRRYGWT 69
           L ++  ++++A AQSA NVR+TYHLYNPQ+INWD   AS +CATWDA+KPL +R++YGWT
Sbjct: 13  LLIISMVMAMAAAQSATNVRSTYHLYNPQNINWDLRAASAFCATWDADKPLAWRQKYGWT 72

Query: 70  AFCGPVGPRGQASCGRCLRVTNTETRASEIVRIVDQCSNGGLDLDVNVFRRIDTNRNGYQ 129
           AFCGP GPRGQ SCGRCLRVTNT T     VRIVDQCSNGGLDLDVNVF ++DTN  GYQ
Sbjct: 73  AFCGPAGPRGQDSCGRCLRVTNTGTGTQTTVRIVDQCSNGGLDLDVNVFNQLDTNGVGYQ 132

Query: 130 RGHLIVNYEFVNC 143
           +GHL VNYEFVNC
Sbjct: 133 QGHLTVNYEFVNC 145

[Close]

BLAST of CmoCh05G012270 vs. Swiss-Prot
Match: WIN1_SOLTU (Wound-induced protein WIN1 OS=Solanum tuberosum GN=WIN1 PE=2 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 9.9e-52
Identity = 88/119 (73.95%), Postives = 102/119 (85.71%), Query Frame = 1


Query: 24  SANNVRATYHLYNPQDINWDYLRASVYCATWDANKPLEFRRRYGWTAFCGPVGPRGQASC 83
           SA NVRATYH+YNPQ++ WD    S YC+TWDANKPL +R++YGWTAFCGPVGPRG+ SC
Sbjct: 79  SAQNVRATYHIYNPQNVGWDLNAVSAYCSTWDANKPLSWRKKYGWTAFCGPVGPRGRDSC 138

Query: 84  GRCLRVTNTETRASEIVRIVDQCSNGGLDLDVNVFRRIDTNRNGYQRGHLIVNYEFVNC 143
           G+CLRVTNT T A   VRIVDQCSNGGLDLDVNVFR+IDT+ NG  +GHLIVNY+FV+C
Sbjct: 139 GKCLRVTNTRTGAQTTVRIVDQCSNGGLDLDVNVFRQIDTDGNGNHQGHLIVNYQFVDC 197

[Close]

BLAST of CmoCh05G012270 vs. Swiss-Prot
Match: WIN2_SOLTU (Wound-induced protein WIN2 OS=Solanum tuberosum GN=WIN2 PE=2 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 3.2e-50
Identity = 86/119 (72.27%), Postives = 100/119 (84.03%), Query Frame = 1


Query: 24  SANNVRATYHLYNPQDINWDYLRASVYCATWDANKPLEFRRRYGWTAFCGPVGPRGQASC 83
           SA NVRATYH+YNPQ++ WD    S YC+TWDANKP  +R +YGWTAFCGPVGPRG+ SC
Sbjct: 78  SAQNVRATYHIYNPQNVGWDLNAVSAYCSTWDANKPYAWRSKYGWTAFCGPVGPRGRDSC 137

Query: 84  GRCLRVTNTETRASEIVRIVDQCSNGGLDLDVNVFRRIDTNRNGYQRGHLIVNYEFVNC 143
           G+CLRVTNT T A   VRIVDQCSNGGLDLD+NVF++IDT+  G Q+GHLIVNY+FVNC
Sbjct: 138 GKCLRVTNTRTGAQTTVRIVDQCSNGGLDLDINVFQQIDTDGVGNQQGHLIVNYQFVNC 196

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BLAST of CmoCh05G012270 vs. TrEMBL
Match: A0A0A0LIC8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G010390 PE=4 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 9.9e-67
Identity = 121/142 (85.21%), Postives = 131/142 (92.25%), Query Frame = 1


Query: 1   MDKRSFLMLLALVLGILSLANAQSANNVRATYHLYNPQDINWDYLRASVYCATWDANKPL 60
           M K S +M+L L LG+LSLANAQSA NVRATYHLYNPQDINWDYLRASV+CATWDA+KPL
Sbjct: 1   MGKGSIMMILVLALGVLSLANAQSATNVRATYHLYNPQDINWDYLRASVFCATWDADKPL 60

Query: 61  EFRRRYGWTAFCGPVGPRGQASCGRCLRVTNTETRASEIVRIVDQCSNGGLDLDVNVFRR 120
           E+RR+YGWTAFCGPVGPRG+ SCGRCLRVTNTET ASEIVRIVDQC+NGGLDLDVNVFRR
Sbjct: 61  EWRRQYGWTAFCGPVGPRGRDSCGRCLRVTNTETGASEIVRIVDQCANGGLDLDVNVFRR 120

Query: 121 IDTNRNGYQRGHLIVNYEFVNC 143
           IDTN NG  RGHLIVNY+FVNC
Sbjct: 121 IDTNGNGNLRGHLIVNYQFVNC 142

[Close]

BLAST of CmoCh05G012270 vs. TrEMBL
Match: A0A0A0LG76_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G010380 PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 6.0e-64
Identity = 114/142 (80.28%), Postives = 127/142 (89.44%), Query Frame = 1


Query: 1   MDKRSFLMLLALVLGILSLANAQSANNVRATYHLYNPQDINWDYLRASVYCATWDANKPL 60
           M+K S +M+L L LG+LSLANAQSA NVRATYHLYNPQ+INWDY++ASVYCATWDANKPL
Sbjct: 1   MEKGSIVMILLLALGVLSLANAQSATNVRATYHLYNPQNINWDYMKASVYCATWDANKPL 60

Query: 61  EFRRRYGWTAFCGPVGPRGQASCGRCLRVTNTETRASEIVRIVDQCSNGGLDLDVNVFRR 120
           E+RRRY WTAFCGPVGPRGQASCGRCL+VTN ET+AS  VRIVDQCSNGGLDLD+  F+ 
Sbjct: 61  EWRRRYDWTAFCGPVGPRGQASCGRCLKVTNVETKASTTVRIVDQCSNGGLDLDIKPFKA 120

Query: 121 IDTNRNGYQRGHLIVNYEFVNC 143
           IDTN NGY+ GHL VNYEFVNC
Sbjct: 121 IDTNGNGYKNGHLKVNYEFVNC 142

[Close]

BLAST of CmoCh05G012270 vs. TrEMBL
Match: A0A0V0GWV1_SOLCH (Putative pathogenesis-related protein P2-like-like OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 8.7e-55
Identity = 100/127 (78.74%), Postives = 110/127 (86.61%), Query Frame = 1


Query: 16  ILSLANAQSANNVRATYHLYNPQDINWDYLRASVYCATWDANKPLEFRRRYGWTAFCGPV 75
           ++++A AQSA NVRATYHLYNPQ+INWD   AS YCATWDA+KPL +R+RYGWTAFCGP 
Sbjct: 17  MMAMAXAQSATNVRATYHLYNPQNINWDLRTASAYCATWDADKPLAWRQRYGWTAFCGPA 76

Query: 76  GPRGQASCGRCLRVTNTETRASEIVRIVDQCSNGGLDLDVNVFRRIDTNRNGYQRGHLIV 135
           GPRGQASCGRCLRVTNT T   E VRIVDQCSNGGLDLDVNVF R+DTN  GYQRG+L V
Sbjct: 77  GPRGQASCGRCLRVTNTGTGTQETVRIVDQCSNGGLDLDVNVFNRLDTNGLGYQRGNLNV 136

Query: 136 NYEFVNC 143
           NYEFVNC
Sbjct: 137 NYEFVNC 143

[Close]

BLAST of CmoCh05G012270 vs. TrEMBL
Match: A0A072VMG3_MEDTR (Chitinase / Hevein / PR-4 / Wheatwin2 OS=Medicago truncatula GN=MTR_1g080810 PE=4 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 1.1e-54
Identity = 99/136 (72.79%), Postives = 118/136 (86.76%), Query Frame = 1


Query: 7   LMLLALVLGILSLANAQSANNVRATYHLYNPQDINWDYLRASVYCATWDANKPLEFRRRY 66
           L++   ++G++ L + QSAN VR+TYHLYNPQ+INWDY RASVYCATWDAN+PLE+R++Y
Sbjct: 10  LLVFCFLVGMM-LVSGQSANGVRSTYHLYNPQNINWDYNRASVYCATWDANQPLEWRKKY 69

Query: 67  GWTAFCGPVGPRGQASCGRCLRVTNTETRASEIVRIVDQCSNGGLDLDVNVFRRIDTNRN 126
           GWTAFCGP GPRG+ SCG+CLRV NT T A E VRIVDQC+NGGLDLDVNVF+RIDTN  
Sbjct: 70  GWTAFCGPQGPRGRDSCGKCLRVKNTATGAQETVRIVDQCANGGLDLDVNVFKRIDTNGQ 129

Query: 127 GYQRGHLIVNYEFVNC 143
           GYQ+GHLIV+Y FVNC
Sbjct: 130 GYQKGHLIVDYVFVNC 144

[Close]

BLAST of CmoCh05G012270 vs. TrEMBL
Match: K7VK61_SOLTU (Pathogenesis-related protein P2 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 1.1e-54
Identity = 100/127 (78.74%), Postives = 110/127 (86.61%), Query Frame = 1


Query: 16  ILSLANAQSANNVRATYHLYNPQDINWDYLRASVYCATWDANKPLEFRRRYGWTAFCGPV 75
           ++++A AQSA NVRATYHLYNPQ+INWD   AS YCATWDA+KPL +R+RYGWTAFCGP 
Sbjct: 17  MMAMAAAQSATNVRATYHLYNPQNINWDLRTASAYCATWDADKPLAWRQRYGWTAFCGPA 76

Query: 76  GPRGQASCGRCLRVTNTETRASEIVRIVDQCSNGGLDLDVNVFRRIDTNRNGYQRGHLIV 135
           GPRGQASCGRCLRVTNT T   E VRIVDQCSNGGLDLDVNVF R+DTN  GYQRG+L V
Sbjct: 77  GPRGQASCGRCLRVTNTGTGTQETVRIVDQCSNGGLDLDVNVFNRLDTNGLGYQRGNLNV 136

Query: 136 NYEFVNC 143
           NYEFVNC
Sbjct: 137 NYEFVNC 143

[Close]

BLAST of CmoCh05G012270 vs. TAIR10
Match: AT3G04720.1 (AT3G04720.1 pathogenesis-related 4)

HSP 1 Score: 191.4 bits (485), Expect = 3.7e-49
Identity = 83/120 (69.17%), Postives = 98/120 (81.67%), Query Frame = 1


Query: 23  QSANNVRATYHLYNPQDINWDYLRASVYCATWDANKPLEFRRRYGWTAFCGPVGPRGQAS 82
           +SA+NVRATYH YNP   NWD    S YC+TWDA+KP  +R +YGWTAFCGP GPRGQAS
Sbjct: 72  ESASNVRATYHFYNPAQNNWDLRAVSAYCSTWDADKPYAWRSKYGWTAFCGPAGPRGQAS 131

Query: 83  CGRCLRVTNTETRASEIVRIVDQCSNGGLDLDVNVFRRIDTNRNGYQRGHLIVNYEFVNC 142
           CG+CLRV NT T A+  VRIVDQCSNGGLDLDV +F +IDT+  GYQ+GHLIV+Y+FV+C
Sbjct: 132 CGKCLRVKNTRTNAAVTVRIVDQCSNGGLDLDVAMFNQIDTDGFGYQQGHLIVDYQFVDC 191

[Close]

BLAST of CmoCh05G012270 vs. NCBI nr
Match: gi|659070649|ref|XP_008456018.1| (PREDICTED: pathogenesis-related protein PR-4-like [Cucumis melo])

HSP 1 Score: 263.1 bits (671), Expect = 2.9e-67
Identity = 122/142 (85.92%), Postives = 131/142 (92.25%), Query Frame = 1


Query: 1   MDKRSFLMLLALVLGILSLANAQSANNVRATYHLYNPQDINWDYLRASVYCATWDANKPL 60
           M+K S +M+L L LG+LSLANAQSA NVRATYHLYNPQDINWDYLRASV+CATWDANKPL
Sbjct: 1   MEKGSIMMILVLALGVLSLANAQSATNVRATYHLYNPQDINWDYLRASVFCATWDANKPL 60

Query: 61  EFRRRYGWTAFCGPVGPRGQASCGRCLRVTNTETRASEIVRIVDQCSNGGLDLDVNVFRR 120
           E+RRRYGWTAFCGPVGPRG+ SCGRCLRVTNTET ASEIVRIVDQC+NGGLDLDVNVFRR
Sbjct: 61  EWRRRYGWTAFCGPVGPRGRDSCGRCLRVTNTETGASEIVRIVDQCANGGLDLDVNVFRR 120

Query: 121 IDTNRNGYQRGHLIVNYEFVNC 143
           IDTN NG  RGHL VNY+FVNC
Sbjct: 121 IDTNGNGNFRGHLTVNYQFVNC 142

[Close]

BLAST of CmoCh05G012270 vs. NCBI nr
Match: gi|449442941|ref|XP_004139239.1| (PREDICTED: pathogenesis-related protein PR-4 [Cucumis sativus])

HSP 1 Score: 260.8 bits (665), Expect = 1.4e-66
Identity = 121/142 (85.21%), Postives = 131/142 (92.25%), Query Frame = 1


Query: 1   MDKRSFLMLLALVLGILSLANAQSANNVRATYHLYNPQDINWDYLRASVYCATWDANKPL 60
           M K S +M+L L LG+LSLANAQSA NVRATYHLYNPQDINWDYLRASV+CATWDA+KPL
Sbjct: 1   MGKGSIMMILVLALGVLSLANAQSATNVRATYHLYNPQDINWDYLRASVFCATWDADKPL 60

Query: 61  EFRRRYGWTAFCGPVGPRGQASCGRCLRVTNTETRASEIVRIVDQCSNGGLDLDVNVFRR 120
           E+RR+YGWTAFCGPVGPRG+ SCGRCLRVTNTET ASEIVRIVDQC+NGGLDLDVNVFRR
Sbjct: 61  EWRRQYGWTAFCGPVGPRGRDSCGRCLRVTNTETGASEIVRIVDQCANGGLDLDVNVFRR 120

Query: 121 IDTNRNGYQRGHLIVNYEFVNC 143
           IDTN NG  RGHLIVNY+FVNC
Sbjct: 121 IDTNGNGNLRGHLIVNYQFVNC 142

[Close]

BLAST of CmoCh05G012270 vs. NCBI nr
Match: gi|449442937|ref|XP_004139237.1| (PREDICTED: pathogenesis-related protein PR-4A-like [Cucumis sativus])

HSP 1 Score: 251.5 bits (641), Expect = 8.6e-64
Identity = 114/142 (80.28%), Postives = 127/142 (89.44%), Query Frame = 1


Query: 1   MDKRSFLMLLALVLGILSLANAQSANNVRATYHLYNPQDINWDYLRASVYCATWDANKPL 60
           M+K S +M+L L LG+LSLANAQSA NVRATYHLYNPQ+INWDY++ASVYCATWDANKPL
Sbjct: 1   MEKGSIVMILLLALGVLSLANAQSATNVRATYHLYNPQNINWDYMKASVYCATWDANKPL 60

Query: 61  EFRRRYGWTAFCGPVGPRGQASCGRCLRVTNTETRASEIVRIVDQCSNGGLDLDVNVFRR 120
           E+RRRY WTAFCGPVGPRGQASCGRCL+VTN ET+AS  VRIVDQCSNGGLDLD+  F+ 
Sbjct: 61  EWRRRYDWTAFCGPVGPRGQASCGRCLKVTNVETKASTTVRIVDQCSNGGLDLDIKPFKA 120

Query: 121 IDTNRNGYQRGHLIVNYEFVNC 143
           IDTN NGY+ GHL VNYEFVNC
Sbjct: 121 IDTNGNGYKNGHLKVNYEFVNC 142

[Close]

BLAST of CmoCh05G012270 vs. NCBI nr
Match: gi|659070651|ref|XP_008456027.1| (PREDICTED: pathogenesis-related protein PR-4-like [Cucumis melo])

HSP 1 Score: 226.1 bits (575), Expect = 3.9e-56
Identity = 103/142 (72.54%), Postives = 118/142 (83.10%), Query Frame = 1


Query: 1   MDKRSFLMLLALVLGILSLANAQSANNVRATYHLYNPQDINWDYLRASVYCATWDANKPL 60
           M+K S +M+L L LG+LSLANAQSA NV ATYHLYNPQ INWDY +A+VYCATWDANKP 
Sbjct: 1   MEKESIVMILLLALGVLSLANAQSATNVTATYHLYNPQIINWDYTKANVYCATWDANKPF 60

Query: 61  EFRRRYGWTAFCGPVGPRGQASCGRCLRVTNTETRASEIVRIVDQCSNGGLDLDVNVFRR 120
           E+R RYGWTAFCGPVGP GQASCGRC +VTN ET+AS IVRIVD+CS GG DLDV VF R
Sbjct: 61  EWRSRYGWTAFCGPVGPHGQASCGRCTKVTNAETKASTIVRIVDECSYGGFDLDVGVFMR 120

Query: 121 IDTNRNGYQRGHLIVNYEFVNC 143
           +DT+  G   G ++VNYEFV+C
Sbjct: 121 LDTDGIGSTNGFIMVNYEFVDC 142

[Close]

BLAST of CmoCh05G012270 vs. NCBI nr
Match: gi|1009117496|ref|XP_015875351.1| (PREDICTED: pathogenesis-related protein PR-4-like [Ziziphus jujuba])

HSP 1 Score: 223.8 bits (569), Expect = 1.9e-55
Identity = 104/142 (73.24%), Postives = 122/142 (85.92%), Query Frame = 1


Query: 1   MDKRSFLMLLALVLGILSLANAQSANNVRATYHLYNPQDINWDYLRASVYCATWDANKPL 60
           M+K S L++L + +  ++ A+AQSA+NVRATYHLYNPQ+INWDY  ASVYCATWDANKPL
Sbjct: 1   MEKMSALVVLMMCM--VASASAQSASNVRATYHLYNPQNINWDYNAASVYCATWDANKPL 60

Query: 61  EFRRRYGWTAFCGPVGPRGQASCGRCLRVTNTETRASEIVRIVDQCSNGGLDLDVNVFRR 120
           E+RR+Y WTAFCGPVGPRGQ SCG+CLRVTNT T+A   VRIVDQCSNGGLDLDVNVF +
Sbjct: 61  EWRRQYRWTAFCGPVGPRGQESCGKCLRVTNTRTQAQVTVRIVDQCSNGGLDLDVNVFNQ 120

Query: 121 IDTNRNGYQRGHLIVNYEFVNC 143
           IDT++ GY +G L VNYEFVNC
Sbjct: 121 IDTDKQGYAQGFLTVNYEFVNC 140

The following BLAST results are available for this feature:

BLAST of CmoCh05G012270 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PRP2_SOLLC	6.0e-57	79.53	Pathogenesis-related protein P2 OS=Solanum lycopersicum PE=2 SV=1	[more]
PR4B_TOBAC	1.2e-54	72.18	Pathogenesis-related protein PR-4B OS=Nicotiana tabacum PE=2 SV=1	[more]
PR4A_TOBAC	1.6e-54	71.43	Pathogenesis-related protein PR-4A OS=Nicotiana tabacum PE=2 SV=1	[more]
WIN1_SOLTU	9.9e-52	73.95	Wound-induced protein WIN1 OS=Solanum tuberosum GN=WIN1 PE=2 SV=1	[more]
WIN2_SOLTU	3.2e-50	72.27	Wound-induced protein WIN2 OS=Solanum tuberosum GN=WIN2 PE=2 SV=1	[more]

BLAST of CmoCh05G012270 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LIC8_CUCSA	9.9e-67	85.21	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G010390 PE=4 SV=1	[more]
A0A0A0LG76_CUCSA	6.0e-64	80.28	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G010380 PE=4 SV=1	[more]
A0A0V0GWV1_SOLCH	8.7e-55	78.74	Putative pathogenesis-related protein P2-like-like OS=Solanum chacoense PE=4 SV=...	[more]
A0A072VMG3_MEDTR	1.1e-54	72.79	Chitinase / Hevein / PR-4 / Wheatwin2 OS=Medicago truncatula GN=MTR_1g080810 PE=...	[more]
K7VK61_SOLTU	1.1e-54	78.74	Pathogenesis-related protein P2 OS=Solanum tuberosum PE=2 SV=1	[more]

BLAST of CmoCh05G012270 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G04720.1	3.7e-49	69.17	pathogenesis-related 4	[more]

BLAST of CmoCh05G012270 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659070649\|ref\|XP_008456018.1\|	2.9e-67	85.92	PREDICTED: pathogenesis-related protein PR-4-like [Cucumis melo]	[more]
gi\|449442941\|ref\|XP_004139239.1\|	1.4e-66	85.21	PREDICTED: pathogenesis-related protein PR-4 [Cucumis sativus]	[more]
gi\|449442937\|ref\|XP_004139237.1\|	8.6e-64	80.28	PREDICTED: pathogenesis-related protein PR-4A-like [Cucumis sativus]	[more]
gi\|659070651\|ref\|XP_008456027.1\|	3.9e-56	72.54	PREDICTED: pathogenesis-related protein PR-4-like [Cucumis melo]	[more]
gi\|1009117496\|ref\|XP_015875351.1\|	1.9e-55	73.24	PREDICTED: pathogenesis-related protein PR-4-like [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001153	Barwin_dom
IPR009009	RlpA-like_DPBB
IPR018226	Barwin_CS

Vocabulary: **Biological Process**
Term	Definition
GO:0042742	defense response to bacterium
GO:0050832	defense response to fungus

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042742	defense response to bacterium
biological_process	GO:0050832	defense response to fungus
cellular_component	GO:0005618	cell wall
cellular_component	GO:0005576	extracellular region
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0008061	chitin binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh05G012270.1	CmoCh05G012270.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001153	Barwin domain	PRODOM	PD004535		coord: 31..142 score: 2.0
IPR001153	Barwin domain	PRINTS	PR00602	BARWIN	coord: 117..141 score: 4.9E-41coord: 77..95 score: 4.9E-41coord: 58..76 score: 4.9E-41coord: 96..114 score: 4.9
IPR001153	Barwin domain	PFAM	PF00967	Barwin	coord: 24..142 score: 1.7
IPR001153	Barwin domain	PROFILE	PS51174	BARWIN_3	coord: 23..142 score: 78
IPR009009	RlpA-like protein, double-psi beta-barrel domain	GENE3D	G3DSA:2.40.40.10		coord: 24..142 score: 8.6
IPR009009	RlpA-like protein, double-psi beta-barrel domain	unknown	SSF50685	Barwin-like endoglucanases	coord: 24..142 score: 4.19
IPR018226	Barwin, conserved site	PROSITE	PS00771	BARWIN_1	coord: 83..91 scor
IPR018226	Barwin, conserved site	PROSITE	PS00772	BARWIN_2	coord: 135..142 scor
None	No IPR available	PANTHER	PTHR22595	CHITINASE-RELATED	coord: 1..142 score: 2.4
None	No IPR available	PANTHER	PTHR22595:SF62	HEVEIN-LIKE PREPROPROTEIN	coord: 1..142 score: 2.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh05G012270	Cucsa.133190	Cucumber (Gy14) v1	cgycmoB0362
CmoCh05G012270	CmaCh05G012040	Cucurbita maxima (Rimu)	cmacmoB787
CmoCh05G012270	Cla019803	Watermelon (97103) v1	cmowmB757
CmoCh05G012270	Csa2G010340	Cucumber (Chinese Long) v2	cmocuB783
CmoCh05G012270	MELO3C004385	Melon (DHL92) v3.5.1	cmomeB724
CmoCh05G012270	ClCG02G016680	Watermelon (Charleston Gray)	cmowcgB700
CmoCh05G012270	CSPI02G02890	Wild cucumber (PI 183967)	cmocpiB787
CmoCh05G012270	Lsi11G004390	Bottle gourd (USVL1VR-Ls)	cmolsiB706
CmoCh05G012270	Cp4.1LG00g04240	Cucurbita pepo (Zucchini)	cmocpeB714
CmoCh05G012270	Cp4.1LG11g09910	Cucurbita pepo (Zucchini)	cmocpeB721
CmoCh05G012270	MELO3C004385.2	Melon (DHL92) v3.6.1	cmomedB821
CmoCh05G012270	CsaV3_2G004040	Cucumber (Chinese Long) v3	cmocucB0924
CmoCh05G012270	Cla97C02G042460	Watermelon (97103) v2	cmowmbB785
CmoCh05G012270	Bhi06G001525	Wax gourd	cmowgoB0919
CmoCh05G012270	CsGy2G003010	Cucumber (Gy14) v2	cgybcmoB243
CmoCh05G012270	Carg22986	Silver-seed gourd	carcmoB1442

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh05G012270	Watermelon (97103) v2	cmowmbB805
CmoCh05G012270	Cucurbita moschata (Rifu)	cmocmoB148
CmoCh05G012270	Cucurbita moschata (Rifu)	cmocmoB305
CmoCh05G012270	Cucurbita maxima (Rimu)	cmacmoB190
CmoCh05G012270	Cucurbita pepo (Zucchini)	cmocpeB717
CmoCh05G012270	Cucurbita pepo (Zucchini)	cmocpeB742
CmoCh05G012270	Silver-seed gourd	carcmoB0974
CmoCh05G012270	Cucumber (Chinese Long) v3	cmocucB0950