Cp4.1LG11g09600 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG11g09600
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionL18 ribosomal protein Heart Stopper
LocationCp4.1LG11 : 8100410 .. 8103172 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TATTGGACTTCAATCCGAAAATATGAGATTGTTGTAATGTAACAAAATAGAAACCCTAATTTATGAATTGAGACTCGAGAGACCTAAAGGGCTATAAGGAACCAAATCGAACGAAGGTGAAGTGCTGGTGAAAATGGCGAGGAGACGGGCTGCATCAATCTTTGTTCTTTTACATATTGGTCTCTCTTTTCTTAGCTTTTGAGCCAAAATCAACCGCGCTGATCTTCGCTTTCTCCCCCGTTTAATTTGTCTCTCAACGAACTGGCAGCTGATCGTTAACTTATTGCAGAAGCTGTGGAAGAAGTTTGAATTATTGAAGAAATTTGTTTCGCCATTCTCCCCTTCATTTTTATCCTATTGGGTATTCTCTATCAGCTCCTCATACTAATTTCTTTGTTTTCTTGATGGAGTTTTGGTTATGGATTGCCAATAATGCACGTANATTAATTTCTTTGTTTTCTTGATGGGGTTTTGGTTATGGATTGCCAATAATGCACGTAACTTGTTCGGNACTAATTTCTTTGTTTTCTTGATGGAGTTTTGGTTATGGATTGCCAATAATGCACGTAACTTGTTCGGATTCATGGCTTCTTCCATTTGTTACTCGCTTTTGATATTTGAAATGTTCGATAGAAGGAATTATGTATTGCCTGCTAACTGTTCGACAAAATGCCTCATAGAGGTTGAATCTGTATGTGTGTTCTTCCGTGATGAATTTAAGCCTTCTCCAGTGTACCCGATGTTTATTTAGTAGTTTAATCCGTTTATTTACTCCTGAGATACTTCATGTGATTTGGGTGCTCATAGGAGTTGAAATCGGGTTCTTTCAGTACAAAAGCGGGGTTGGCTAGTAGAAGGAGGAAAAGATGTTGAAACACTTGCTTGGAAACATGCGGAAACATGCGGTTTGTGCATGTGAAGTAAACAGGGCCAGGCCTTATTTGTTTGTGCCAACAAGTGACTTTCATAAGGGGGAGGTAAGAATTTCTTCCCTTAGTTATCTATATGTTTGTTTTTAAATGTACATATTATTTTTTCTAATAAGCAAAACCTCCAAAATAAGATACTACACACAATACATCTTCAAAGTCACAATATTTCACTCTTTGCATAATTTACATAATGAGGTAACATAGACTTTCACCAAAAAGGAATTTTACCCAGTAGTAATTTACTGGATTGAATAGTTTTGAAAAGCTTTGGATGGATCACAAGGAGGAGCCATATGAAGCTTGATTGATTCAAAGGTTTCTTCCCATGAGGAGCATTTGTTGTCAAAGATCTTCTTCTAAAACCAAATTCCCTTTGGTACTTGACAATTTTGATCCAAAGAATCCAAGCTTTTCCTTCGACACCGTGACTGCTTAAGGAACCGTATATGTTACTTCTAGCTTTAGCACTGAAACTAATGGCCTAATCTCTTACAGATAACTTAAGAGATACCTCCCAGAAGCTTTACATAGGAGCTGGGAGTTCATAGAATTTAGGATATGGATACCATATCATCCACTACGAGTTGACCCAATAATCATATAGCGAAGTTGTTATCTTAGATGTTGTAATGGCTAACAAGGGCTTTAGCCTAGTCTTTTTCGGTTTTCTTGTTTCGGTTATTGGTTTCTTGTTTTTGTGAGGAACAGGCTTGTTAGTTAGTTGTCGACTTGTGGCGGATTCTCTTAGTCGTTTTTTATAGCTGTTATTGTAGTTAGTTAGGTGGCTGGACATTATCTCCTATAAACTGGGGGTCTTACCAAAGGTGCAAGGAAAATTTCAGAAAACTAATGAAGATTTCTACGCCTTTGTAACGGAATTACATCTAAGACATCTATGAGGTGTCAACTTCAAACTAGGTAACTAGAATTATAAATATTCTACGAGTTTTCAATATCAACTGTCGAGAGCTTCTGTGAGATCCTACATTGGTTGGGGAGGAGAACGAAACATTCTTTATAAGGGTGTGAGATCCTACATTAGTAGACGAGTGAAAGCCAGGAAAGGAAAGCTCAAAGAGGACAATATATGCTAGCGGCGGACTTGGGCCGTTACAGCTTCACGGTAATCCTTATATAAGTTTTGCCTAGGACACCAACAATGATAGAGAAATCACATATTCAAATTTAATCAATATTTGCATCCCTATATCCTCTTATTGGCTACTCTTTTGACTTCTACATGAATGTCCTCACATGATGTTATCCCAGAAGTTTTGATCACAGATAATCATCATTTTCATACTGCTTAAATGAATCCATCTTTGCATTAGAAAAATTACTTGCCCAGATTTATAAACCTTTGATTACTCTATCACAGGCTCATTATGCACCCAGAAGTTTCTTTGGTGTGGAGGACTTCGTCGACGATGATAATAGTCGGCCATACACATACCAAAAGGGGAAGAAATCCAAAAATCCAAAAAAGCACATATCATTCAAACAACGGACGGTAGCCTACATGGAGCCATTTACACTCGACGTGTTCATCTCGAAGCGGTTTGTTTCAGCATCGCTCACGCACAGGGTGACTTGTAAACAAGTTGCAGTTGCAGGTACGAACTCGAAAGATATCAAAGCTGTTCTTCAGTCTCGTTCGGACATTCCTGCTTGTTTGGCTGTAGGCCGTATTTTATCTGAGAGGGCTAAAGAAGCTGATGTTTATACTGCTAGTTATACTCCTAGAGAGAGAGATAAATTTGAAGGCAAAATAAGAGCTGTGGTTCAGTCTCTTATTGATAATGGGATTGATGTAAAAATCTATCTGGAGTAA

mRNA sequence

TATTGGACTTCAATCCGAAAATATGAGATTGTTGTAATGTAACAAAATAGAAACCCTAATTTATGAATTGAGACTCGAGAGACCTAAAGGGCTATAAGGAACCAAATCGAACGAAGGTGAAGTGCTGGTGAAAATGGCGAGGAGACGGGCTGCATCAATCTTTGTTCTTTTACATATTGGTCTCTCTTTTCTTAGCTTTTGAGCCAAAATCAACCGCGCTGATCTTCGCTTTCTCCCCCGTTTAATTTGTCTCTCAACGAACTGGCAGCTGATCGTTAACTTATTGCAGAAGCTGTGGAAGAAGTTTGAATTATTGAAGAAATTTGTTTCGCCATTCTCCCCTTCATTTTTATCCTATTGGGAGTTGAAATCGGGTTCTTTCAGTACAAAAGCGGGGTTGGCTAGTAGAAGGAGGAAAAGATGTTGAAACACTTGCTTGGAAACATGCGGAAACATGCGGTTTGTGCATGTGAAGTAAACAGGGCCAGGCCTTATTTGTTTGTGCCAACAAGTGACTTTCATAAGGGGGAGGCTCATTATGCACCCAGAAGTTTCTTTGGTGTGGAGGACTTCGTCGACGATGATAATAGTCGGCCATACACATACCAAAAGGGGAAGAAATCCAAAAATCCAAAAAAGCACATATCATTCAAACAACGGACGGTAGCCTACATGGAGCCATTTACACTCGACGTGTTCATCTCGAAGCGGTTTGTTTCAGCATCGCTCACGCACAGGGTGACTTGTAAACAAGTTGCAGTTGCAGGTACGAACTCGAAAGATATCAAAGCTGTTCTTCAGTCTCGTTCGGACATTCCTGCTTGTTTGGCTGTAGGCCGTATTTTATCTGAGAGGGCTAAAGAAGCTGATGTTTATACTGCTAGTTATACTCCTAGAGAGAGAGATAAATTTGAAGGCAAAATAAGAGCTGTGGTTCAGTCTCTTATTGATAATGGGATTGATGTAAAAATCTATCTGGAGTAA

Coding sequence (CDS)

ATGTTGAAACACTTGCTTGGAAACATGCGGAAACATGCGGTTTGTGCATGTGAAGTAAACAGGGCCAGGCCTTATTTGTTTGTGCCAACAAGTGACTTTCATAAGGGGGAGGCTCATTATGCACCCAGAAGTTTCTTTGGTGTGGAGGACTTCGTCGACGATGATAATAGTCGGCCATACACATACCAAAAGGGGAAGAAATCCAAAAATCCAAAAAAGCACATATCATTCAAACAACGGACGGTAGCCTACATGGAGCCATTTACACTCGACGTGTTCATCTCGAAGCGGTTTGTTTCAGCATCGCTCACGCACAGGGTGACTTGTAAACAAGTTGCAGTTGCAGGTACGAACTCGAAAGATATCAAAGCTGTTCTTCAGTCTCGTTCGGACATTCCTGCTTGTTTGGCTGTAGGCCGTATTTTATCTGAGAGGGCTAAAGAAGCTGATGTTTATACTGCTAGTTATACTCCTAGAGAGAGAGATAAATTTGAAGGCAAAATAAGAGCTGTGGTTCAGTCTCTTATTGATAATGGGATTGATGTAAAAATCTATCTGGAGTAA

Protein sequence

MLKHLLGNMRKHAVCACEVNRARPYLFVPTSDFHKGEAHYAPRSFFGVEDFVDDDNSRPYTYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLQSRSDIPACLAVGRILSERAKEADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE
Homology
[Close]
BLAST of Cp4.1LG11g09600 vs. TrEMBL
Match: A0A0A0LLI4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G013320 PE=4 SV=1)

HSP 1 Score: 355.9 bits (912), Expect = 3.0e-95
Identity = 175/187 (93.58%), Postives = 180/187 (96.26%), Query Frame = 1 

Query: 1   MLKHLLGNMRKHAVCACEVNRARPYLFVPTSDFHKGEAHYAPRSFFGVEDFVDDDNSRPY 60
           MLKH LGNMRKH VCACEVNR RPYL VPTSDFHKGE H APRSFFG+EDF+DDDNSRPY
Sbjct: 1   MLKHFLGNMRKHVVCACEVNRFRPYLLVPTSDFHKGEVHCAPRSFFGIEDFLDDDNSRPY 60

Query: 61  TYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120
           TYQK KKSKNPKKHISFKQRT+AYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK
Sbjct: 61  TYQKSKKSKNPKKHISFKQRTLAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120

Query: 121 DIKAVLQSRSDIPACLAVGRILSERAKEADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180
           DIKAVLQSRSDIPACLAVGRIL+ERA+EADVYTASYTPRERDKFEGKIRAVVQSLIDNGI
Sbjct: 121 DIKAVLQSRSDIPACLAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180

Query: 181 DVKIYLE 188
           DVKIYLE
Sbjct: 181 DVKIYLE 187

[Close]
BLAST of Cp4.1LG11g09600 vs. TrEMBL
Match: K7KJN0_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_04G122100 PE=4 SV=1)

HSP 1 Score: 314.3 bits (804), Expect = 9.9e-83
Identity = 153/187 (81.82%), Postives = 171/187 (91.44%), Query Frame = 1 

Query: 1   MLKHLLGNMRKHAVCACEVNRARPYLFVPTSDFHKGEAHYAPRSFFGVEDFVDDDNSRPY 60
           MLK  +G + +  V ACE NR  P+++VP+S FH G+AH APRSFFGVEDF+DDDNSRPY
Sbjct: 1   MLKQAIGRIFRTGVYACEGNRVLPWIYVPSSFFHHGQAHMAPRSFFGVEDFLDDDNSRPY 60

Query: 61  TYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120
           TYQKGKKSKNP KHISFKQRT+AYMEPFTLDVFISKRFVSASLTHRVT KQVAVAGTNSK
Sbjct: 61  TYQKGKKSKNPNKHISFKQRTIAYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSK 120

Query: 121 DIKAVLQSRSDIPACLAVGRILSERAKEADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180
           DIKAVL+SRSDIPAC+A+GRIL+ERAKEADVYT SYTPR+RDKFEGKIRAVVQSLIDNGI
Sbjct: 121 DIKAVLRSRSDIPACIAIGRILAERAKEADVYTGSYTPRDRDKFEGKIRAVVQSLIDNGI 180

Query: 181 DVKIYLE 188
           D+K+YL+
Sbjct: 181 DIKVYLD 187

[Close]
BLAST of Cp4.1LG11g09600 vs. TrEMBL
Match: A0A0B2S3H0_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_017300 PE=4 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 3.8e-82
Identity = 152/187 (81.28%), Postives = 171/187 (91.44%), Query Frame = 1 

Query: 1   MLKHLLGNMRKHAVCACEVNRARPYLFVPTSDFHKGEAHYAPRSFFGVEDFVDDDNSRPY 60
           MLK ++G + +  V ACE NR  P+++VP+  FH G+AH APRSFFGVEDF+DDDNSRPY
Sbjct: 16  MLKQVIGRICRTDVYACEGNRVLPWIYVPSCFFHHGQAHMAPRSFFGVEDFLDDDNSRPY 75

Query: 61  TYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120
           TYQKGKKSKNP KHISFKQRT+AYMEPFTLDVFISKRFVSASLTHRVT KQVAVAGTNSK
Sbjct: 76  TYQKGKKSKNPNKHISFKQRTIAYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSK 135

Query: 121 DIKAVLQSRSDIPACLAVGRILSERAKEADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180
           DIKAVL+SRSDIPAC+A+GRIL+ERAKEADVYT SYTPR+RDKFEGKIRAVVQSLIDNGI
Sbjct: 136 DIKAVLRSRSDIPACIAIGRILAERAKEADVYTGSYTPRDRDKFEGKIRAVVQSLIDNGI 195

Query: 181 DVKIYLE 188
           D+K+YL+
Sbjct: 196 DIKVYLD 202

[Close]
BLAST of Cp4.1LG11g09600 vs. TrEMBL
Match: I1KFI3_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_06G309500 PE=4 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 3.8e-82
Identity = 152/187 (81.28%), Postives = 171/187 (91.44%), Query Frame = 1 

Query: 1   MLKHLLGNMRKHAVCACEVNRARPYLFVPTSDFHKGEAHYAPRSFFGVEDFVDDDNSRPY 60
           MLK ++G + +  V ACE NR  P+++VP+  FH G+AH APRSFFGVEDF+DDDNSRPY
Sbjct: 16  MLKQVIGRICRTDVYACEGNRVLPWIYVPSCFFHHGQAHMAPRSFFGVEDFLDDDNSRPY 75

Query: 61  TYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120
           TYQKGKKSKNP KHISFKQRT+AYMEPFTLDVFISKRFVSASLTHRVT KQVAVAGTNSK
Sbjct: 76  TYQKGKKSKNPNKHISFKQRTIAYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSK 135

Query: 121 DIKAVLQSRSDIPACLAVGRILSERAKEADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180
           DIKAVL+SRSDIPAC+A+GRIL+ERAKEADVYT SYTPR+RDKFEGKIRAVVQSLIDNGI
Sbjct: 136 DIKAVLRSRSDIPACIAIGRILAERAKEADVYTGSYTPRDRDKFEGKIRAVVQSLIDNGI 195

Query: 181 DVKIYLE 188
           D+K+YL+
Sbjct: 196 DIKVYLD 202

[Close]
BLAST of Cp4.1LG11g09600 vs. TrEMBL
Match: A0A0R0JVC6_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_06G309500 PE=4 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 3.8e-82
Identity = 152/187 (81.28%), Postives = 171/187 (91.44%), Query Frame = 1 

Query: 1   MLKHLLGNMRKHAVCACEVNRARPYLFVPTSDFHKGEAHYAPRSFFGVEDFVDDDNSRPY 60
           MLK ++G + +  V ACE NR  P+++VP+  FH G+AH APRSFFGVEDF+DDDNSRPY
Sbjct: 38  MLKQVIGRICRTDVYACEGNRVLPWIYVPSCFFHHGQAHMAPRSFFGVEDFLDDDNSRPY 97

Query: 61  TYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120
           TYQKGKKSKNP KHISFKQRT+AYMEPFTLDVFISKRFVSASLTHRVT KQVAVAGTNSK
Sbjct: 98  TYQKGKKSKNPNKHISFKQRTIAYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSK 157

Query: 121 DIKAVLQSRSDIPACLAVGRILSERAKEADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180
           DIKAVL+SRSDIPAC+A+GRIL+ERAKEADVYT SYTPR+RDKFEGKIRAVVQSLIDNGI
Sbjct: 158 DIKAVLRSRSDIPACIAIGRILAERAKEADVYTGSYTPRDRDKFEGKIRAVVQSLIDNGI 217

Query: 181 DVKIYLE 188
           D+K+YL+
Sbjct: 218 DIKVYLD 224

[Close]
BLAST of Cp4.1LG11g09600 vs. TAIR10
Match: AT1G08845.2 (AT1G08845.2 Ribosomal L18p/L5e family protein)

HSP 1 Score: 284.3 bits (726), Expect = 5.6e-77
Identity = 142/189 (75.13%), Postives = 163/189 (86.24%), Query Frame = 1 

Query: 1   MLKHLLG--NMRKHAVCACEVNRARPYLFVPTSDFHKGEAHYAPRSFFGVEDFVDDDNSR 60
           MLK ++   ++ K A+      + RP++   +  FH G   +APRSFFGVED+VDDD SR
Sbjct: 46  MLKQVVAKYSIGKAAIYGSNREKLRPFMCQTSCRFHNGRTVFAPRSFFGVEDYVDDDTSR 105

Query: 61  PYTYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTN 120
           PYTYQK KKSKNP KH+SFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTC+QVAVAGTN
Sbjct: 106 PYTYQKEKKSKNPDKHVSFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCRQVAVAGTN 165

Query: 121 SKDIKAVLQSRSDIPACLAVGRILSERAKEADVYTASYTPRERDKFEGKIRAVVQSLIDN 180
           SKD+KAVL+SR DIPAC+++GRILSERAKEADVYTASYTPR++DKFEGKIRAVVQSLIDN
Sbjct: 166 SKDVKAVLRSRCDIPACMSIGRILSERAKEADVYTASYTPRDQDKFEGKIRAVVQSLIDN 225

Query: 181 GIDVKIYLE 188
           GIDVKIYL+
Sbjct: 226 GIDVKIYLD 234

[Close]
BLAST of Cp4.1LG11g09600 vs. TAIR10
Match: AT3G22450.1 (AT3G22450.1 Ribosomal L18p/L5e family protein)

HSP 1 Score: 110.9 bits (276), Expect = 8.4e-25
Identity = 56/119 (47.06%), Postives = 82/119 (68.91%), Query Frame = 1 

Query: 69  KNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLQS 128
           K  ++  +F Q T  +  PF LD++ISK  V A + HRVT K V VA + SKD+K  L S
Sbjct: 179 KKRERTFTFNQLTAPFHYPFCLDIYISKESVRACVIHRVTSKVVTVAHSISKDMKFDLGS 238

Query: 129 RSDIPACLAVGRILSERAKEADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE 188
           R ++ AC AVG +L++R+ E D++   YTPR+ DK EGK++ V+Q+LIDNG++VK+ L+
Sbjct: 239 RRNVAACAAVGAVLAQRSLEDDIHDVIYTPRKGDKIEGKLQVVLQALIDNGVNVKVKLK 297

[Close]
BLAST of Cp4.1LG11g09600 vs. TAIR10
Match: AT3G20230.1 (AT3G20230.1 Ribosomal L18p/L5e family protein)

HSP 1 Score: 104.0 bits (258), Expect = 1.0e-22
Identity = 50/117 (42.74%), Postives = 81/117 (69.23%), Query Frame = 1 

Query: 64  KGKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIK 123
           +G+ +K P +  S+KQRT  YM PF L+VF S++F+ A + HR T K ++VA TN++DI+
Sbjct: 68  RGEAAKRPNRK-SWKQRTDMYMRPFLLNVFFSRKFIHAKVMHRPTSKVISVATTNARDIR 127

Query: 124 AVLQSRSDIPACLAVGRILSERAKEADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 181
             + S  D  AC  +G++++ER+ EADVY  SY PR+ ++ EGK+  V+ ++ ++GI
Sbjct: 128 TNIPSLVDNEACRLIGKLIAERSMEADVYAVSYEPRKGERIEGKLGIVIDTIKEHGI 183

[Close]
BLAST of Cp4.1LG11g09600 vs. NCBI nr
Match: gi|449442869|ref|XP_004139203.1| (PREDICTED: uncharacterized protein LOC101215592 [Cucumis sativus])

HSP 1 Score: 355.9 bits (912), Expect = 4.3e-95
Identity = 175/187 (93.58%), Postives = 180/187 (96.26%), Query Frame = 1 

Query: 1   MLKHLLGNMRKHAVCACEVNRARPYLFVPTSDFHKGEAHYAPRSFFGVEDFVDDDNSRPY 60
           MLKH LGNMRKH VCACEVNR RPYL VPTSDFHKGE H APRSFFG+EDF+DDDNSRPY
Sbjct: 1   MLKHFLGNMRKHVVCACEVNRFRPYLLVPTSDFHKGEVHCAPRSFFGIEDFLDDDNSRPY 60

Query: 61  TYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120
           TYQK KKSKNPKKHISFKQRT+AYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK
Sbjct: 61  TYQKSKKSKNPKKHISFKQRTLAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120

Query: 121 DIKAVLQSRSDIPACLAVGRILSERAKEADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180
           DIKAVLQSRSDIPACLAVGRIL+ERA+EADVYTASYTPRERDKFEGKIRAVVQSLIDNGI
Sbjct: 121 DIKAVLQSRSDIPACLAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180

Query: 181 DVKIYLE 188
           DVKIYLE
Sbjct: 181 DVKIYLE 187

[Close]
BLAST of Cp4.1LG11g09600 vs. NCBI nr
Match: gi|659070510|ref|XP_008455473.1| (PREDICTED: uncharacterized protein LOC103495625 [Cucumis melo])

HSP 1 Score: 353.6 bits (906), Expect = 2.1e-94
Identity = 175/187 (93.58%), Postives = 179/187 (95.72%), Query Frame = 1 

Query: 1   MLKHLLGNMRKHAVCACEVNRARPYLFVPTSDFHKGEAHYAPRSFFGVEDFVDDDNSRPY 60
           MLKH LGNM KH VCACEVNR RPYL VPTSDFHKGE H APRSFFGVEDF+DDDNSRPY
Sbjct: 1   MLKHFLGNMGKHVVCACEVNRFRPYLLVPTSDFHKGEVHCAPRSFFGVEDFLDDDNSRPY 60

Query: 61  TYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120
           TYQK KKSKNPKKHISFKQRT+AYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK
Sbjct: 61  TYQKAKKSKNPKKHISFKQRTLAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120

Query: 121 DIKAVLQSRSDIPACLAVGRILSERAKEADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180
           DIKAVLQSRSDIPACLAVGRIL+ERA+EADVYTASYTPRERDKFEGKIRAVVQSLIDNGI
Sbjct: 121 DIKAVLQSRSDIPACLAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180

Query: 181 DVKIYLE 188
           DVKIYLE
Sbjct: 181 DVKIYLE 187

[Close]
BLAST of Cp4.1LG11g09600 vs. NCBI nr
Match: gi|356508210|ref|XP_003522852.1| (PREDICTED: 50S ribosomal protein L18 [Glycine max])

HSP 1 Score: 314.3 bits (804), Expect = 1.4e-82
Identity = 153/187 (81.82%), Postives = 171/187 (91.44%), Query Frame = 1 

Query: 1   MLKHLLGNMRKHAVCACEVNRARPYLFVPTSDFHKGEAHYAPRSFFGVEDFVDDDNSRPY 60
           MLK  +G + +  V ACE NR  P+++VP+S FH G+AH APRSFFGVEDF+DDDNSRPY
Sbjct: 1   MLKQAIGRIFRTGVYACEGNRVLPWIYVPSSFFHHGQAHMAPRSFFGVEDFLDDDNSRPY 60

Query: 61  TYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120
           TYQKGKKSKNP KHISFKQRT+AYMEPFTLDVFISKRFVSASLTHRVT KQVAVAGTNSK
Sbjct: 61  TYQKGKKSKNPNKHISFKQRTIAYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSK 120

Query: 121 DIKAVLQSRSDIPACLAVGRILSERAKEADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180
           DIKAVL+SRSDIPAC+A+GRIL+ERAKEADVYT SYTPR+RDKFEGKIRAVVQSLIDNGI
Sbjct: 121 DIKAVLRSRSDIPACIAIGRILAERAKEADVYTGSYTPRDRDKFEGKIRAVVQSLIDNGI 180

Query: 181 DVKIYLE 188
           D+K+YL+
Sbjct: 181 DIKVYLD 187

[Close]
BLAST of Cp4.1LG11g09600 vs. NCBI nr
Match: gi|947107812|gb|KRH56195.1| (hypothetical protein GLYMA_06G309500 [Glycine max])

HSP 1 Score: 312.4 bits (799), Expect = 5.4e-82
Identity = 152/187 (81.28%), Postives = 171/187 (91.44%), Query Frame = 1 

Query: 1   MLKHLLGNMRKHAVCACEVNRARPYLFVPTSDFHKGEAHYAPRSFFGVEDFVDDDNSRPY 60
           MLK ++G + +  V ACE NR  P+++VP+  FH G+AH APRSFFGVEDF+DDDNSRPY
Sbjct: 38  MLKQVIGRICRTDVYACEGNRVLPWIYVPSCFFHHGQAHMAPRSFFGVEDFLDDDNSRPY 97

Query: 61  TYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120
           TYQKGKKSKNP KHISFKQRT+AYMEPFTLDVFISKRFVSASLTHRVT KQVAVAGTNSK
Sbjct: 98  TYQKGKKSKNPNKHISFKQRTIAYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSK 157

Query: 121 DIKAVLQSRSDIPACLAVGRILSERAKEADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180
           DIKAVL+SRSDIPAC+A+GRIL+ERAKEADVYT SYTPR+RDKFEGKIRAVVQSLIDNGI
Sbjct: 158 DIKAVLRSRSDIPACIAIGRILAERAKEADVYTGSYTPRDRDKFEGKIRAVVQSLIDNGI 217

Query: 181 DVKIYLE 188
           D+K+YL+
Sbjct: 218 DIKVYLD 224

[Close]
BLAST of Cp4.1LG11g09600 vs. NCBI nr
Match: gi|356517682|ref|XP_003527515.1| (PREDICTED: 50S ribosomal protein L18 [Glycine max])

HSP 1 Score: 312.4 bits (799), Expect = 5.4e-82
Identity = 152/187 (81.28%), Postives = 171/187 (91.44%), Query Frame = 1 

Query: 1   MLKHLLGNMRKHAVCACEVNRARPYLFVPTSDFHKGEAHYAPRSFFGVEDFVDDDNSRPY 60
           MLK ++G + +  V ACE NR  P+++VP+  FH G+AH APRSFFGVEDF+DDDNSRPY
Sbjct: 16  MLKQVIGRICRTDVYACEGNRVLPWIYVPSCFFHHGQAHMAPRSFFGVEDFLDDDNSRPY 75

Query: 61  TYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120
           TYQKGKKSKNP KHISFKQRT+AYMEPFTLDVFISKRFVSASLTHRVT KQVAVAGTNSK
Sbjct: 76  TYQKGKKSKNPNKHISFKQRTIAYMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSK 135

Query: 121 DIKAVLQSRSDIPACLAVGRILSERAKEADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180
           DIKAVL+SRSDIPAC+A+GRIL+ERAKEADVYT SYTPR+RDKFEGKIRAVVQSLIDNGI
Sbjct: 136 DIKAVLRSRSDIPACIAIGRILAERAKEADVYTGSYTPRDRDKFEGKIRAVVQSLIDNGI 195

Query: 181 DVKIYLE 188
           D+K+YL+
Sbjct: 196 DIKVYLD 202

The following BLAST results are available for this feature:
BLAST of Cp4.1LG11g09600 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG11g09600 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LLI4_CUCSA3.0e-9593.58Uncharacterized protein OS=Cucumis sativus GN=Csa_2G013320 PE=4 SV=1[more]
K7KJN0_SOYBN9.9e-8381.82Uncharacterized protein OS=Glycine max GN=GLYMA_04G122100 PE=4 SV=1[more]
A0A0B2S3H0_GLYSO3.8e-8281.28Uncharacterized protein OS=Glycine soja GN=glysoja_017300 PE=4 SV=1[more]
I1KFI3_SOYBN3.8e-8281.28Uncharacterized protein OS=Glycine max GN=GLYMA_06G309500 PE=4 SV=1[more]
A0A0R0JVC6_SOYBN3.8e-8281.28Uncharacterized protein OS=Glycine max GN=GLYMA_06G309500 PE=4 SV=1[more]
BLAST of Cp4.1LG11g09600 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G08845.25.6e-7775.13 Ribosomal L18p/L5e family protein[more]
AT3G22450.18.4e-2547.06 Ribosomal L18p/L5e family protein[more]
AT3G20230.11.0e-2242.74 Ribosomal L18p/L5e family protein[more]
BLAST of Cp4.1LG11g09600 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449442869|ref|XP_004139203.1|4.3e-9593.58PREDICTED: uncharacterized protein LOC101215592 [Cucumis sativus][more]
gi|659070510|ref|XP_008455473.1|2.1e-9493.58PREDICTED: uncharacterized protein LOC103495625 [Cucumis melo][more]
gi|356508210|ref|XP_003522852.1|1.4e-8281.82PREDICTED: 50S ribosomal protein L18 [Glycine max][more]
gi|947107812|gb|KRH56195.1|5.4e-8281.28hypothetical protein GLYMA_06G309500 [Glycine max][more]
gi|356517682|ref|XP_003527515.1|5.4e-8281.28PREDICTED: 50S ribosomal protein L18 [Glycine max][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: INTERPRO
TermDefinition
IPR005484Ribosomal_L18
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG11g09600.1Cp4.1LG11g09600.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005484Ribosomal protein L18PFAMPF00861Ribosomal_L18pcoord: 66..181
score: 1.
NoneNo IPR availableGENE3DG3DSA:3.30.420.100coord: 86..182
score: 3.8
NoneNo IPR availablePANTHERPTHR1289939S RIBOSOMAL PROTEIN L18, MITOCHONDRIALcoord: 1..187
score: 8.5E
NoneNo IPR availablePANTHERPTHR12899:SF5RIBOSOMAL L18P/L5E FAMILY PROTEINcoord: 1..187
score: 8.5E
NoneNo IPR availableunknownSSF53137Translational machinery componentscoord: 66..180
score: 3.14

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG11g09600Cucurbita pepo (Zucchini)cpecpeB001
Cp4.1LG11g09600Cucurbita pepo (Zucchini)cpecpeB139
Cp4.1LG11g09600Cucumber (Gy14) v1cgycpeB0351
Cp4.1LG11g09600Cucurbita maxima (Rimu)cmacpeB171
Cp4.1LG11g09600Cucurbita maxima (Rimu)cmacpeB767
Cp4.1LG11g09600Cucurbita moschata (Rifu)cmocpeB051
Cp4.1LG11g09600Cucurbita moschata (Rifu)cmocpeB147
Cp4.1LG11g09600Cucurbita moschata (Rifu)cmocpeB721
Cp4.1LG11g09600Wild cucumber (PI 183967)cpecpiB100
Cp4.1LG11g09600Cucumber (Chinese Long) v2cpecuB103
Cp4.1LG11g09600Bottle gourd (USVL1VR-Ls)cpelsiB074
Cp4.1LG11g09600Watermelon (Charleston Gray)cpewcgB104
Cp4.1LG11g09600Watermelon (97103) v1cpewmB113
Cp4.1LG11g09600Melon (DHL92) v3.5.1cpemeB099
Cp4.1LG11g09600Cucumber (Gy14) v2cgybcpeB168
Cp4.1LG11g09600Melon (DHL92) v3.6.1cpemedB123
Cp4.1LG11g09600Silver-seed gourdcarcpeB0410
Cp4.1LG11g09600Silver-seed gourdcarcpeB1005
Cp4.1LG11g09600Cucumber (Chinese Long) v3cpecucB0114
Cp4.1LG11g09600Wax gourdcpewgoB0114