Cp4.1LG11g09070 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG11g09070
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	ATP-dependent Clp protease proteolytic subunit
Location	Cp4.1LG11 : 7462625 .. 7468018 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TACAATTTTCACGTCTCTGAAAACTCGAGAAGAAGCTAAAATCCTAGAAAATGGCCACCGGGATGAAGCTCCCCATGGCTGTTAGCTTGCAGAAACCCATGGCTATGGCGGTTCCATCTTCCTCATCTCGTCTCCCTAGAGGGATCAATTTCAGGACTTGTTGCAGCATGAACGCTACAAGTAAAGCGAAAATCCCTTTACCTCCGATAAACCCAAAGGATCCATTTCTTTCGAAGCTCGCTTCAGTAGCTTCAACCTCACCTGAAACGTTGCTAAGCCGCCCTGGAAATTCCGATTCTCTTCCATATTTGGATATTTTTGATTCTCCTCAGCTCATGGCTGCGCCTGCCCAAGTAAGTAAGCTGTCCCTCGCTTAATTTCATATGCGTTTTTTTGTTCTTGCTGGTGTTTATATGATTTTCTATTTGGAAACGGAGTTTTATTTAAATTAAGCTTTGTTTGGTAGCTAATGTTGTGAATTTGGTGATTTTCTTATTGGATAAGGTCGAAAGATCAGTTTCCTACAACGAGCATAGGTCGAGGAGGCCGCCGCCTGACTTGCCGTCTCTGTTACTTCATGGAAGAATTGTTTACATCGGAATGCCTGTAAGTGATTGAATTAGTGTTACTGCTGTGCTATACGATTTAACTTGTTTTTCGAGGAACTATTCAACTAATATTAAGGGGGAATTTACCACGATTTTTTCAATATCTTATGGTCGAGTAGTTACATTGAATGAAAAAAATGAAGCATGTTCTTTAAATTATATAAAATTTAAACGTTTTAACTAATGCACGCTGTAAAGGTGCCTCTCATAATTGCATATCGTATATCTTTAGAGGCCTACAGAGTGAAGGAAATTGTAGTTCACGAACCTTGTTGATTGAACTGAAAGTGTTAATTAAGTTGTGTTGGGGTGCTTCGGTATCATGATCCTATTAAAACAGATTTTATGACCTCATTCAGCTACTGATTTTGAAGCTTAGCAATTTTTTTTTTCAAGTGCTCTATACACTGTAGAATGATTTTCGTTTCTTTCCTCTCGAGTTGCATAAGCCCCTATGAAATAGCCATTCACAATATAAGTGTAACATGGTTTTTTTTCTAAGGCATAATTGATTCTAAATGGTTTAGAAACTATTGTGTCAACGTTCTGAGCAGTTTTTAACTGTCTTTTAAAACAAGCTTTCAGCTTCTTGTGTAGAGAATACCATAGTATCTGATCCCTCTTCATTCAATCATTTCTACTCTCAGTTGGTTCCAGCTGTCACGGAGCTAGTTATTGCTCAACTGATGTACTTGCAATGGATGGATCCAAAAGAACCAATATATATTTATATAAACTCCTCAGGAACAACTCGTGATGATGGTGAAACTGTAAGCTTTGAAATTATTCAGCTACATGAAACGAGTCAAATTAAGCTGTTAAAAGCATGCCTATCTTCTTCTTGCTTTATAAAATCTTCTGCCTGCCGTTAGGAGTTTCAGGGTTTGTATTCAGACTATGTCTTACTCATATGTCTATGTGTTCACATGCTTATTGTTAAAGTATTTATTTAAGTTTAAATTTACCGTGAGTATTACCTTGACATCAAAGAAGATTTTGATCCGATGCTTTACTTTTGTCCTAGTTGATTCTGATTTGACATTAGAAGTATATTCTTTTTTTTTTTTCCCAATAACCAAATAATTGTCTGTAGATACGAATATTTGATATGATTCCATCATTAAATTTTCTTCCCTGTCAACTTAAGTTTTTGGGTTCAGTGGTAACTTAACATAGTATAAGAGGTGGAAGTCTCTCGTTCAAATCCCTATATTGTCATTTCCTCCCCATCCCATTTTGATTTCTGCTTGTTGGGTCTTTTAAAAAATTTTCAGGTCCACAAGTGAAGGAAGTGTTAAAGCATTCATTTTGTTCTCCAGTCAAAATCAAGAAAAACAATCTTTTAAACTTTATATTATTCCTCTCTCCAAATGAGATTGTAGCGCTCTTCTTTAGCTTGGCCAAAAGTTTGCTTGCTTGATTGGAGCCATATTTTGTAGCTTGGCTCCTTTTGGGCTGGTTTTTTTGAATTCCCTTTATAATCTTTCATTTTTTTTTTGTCAATGACGGCTCAATCTTTATATGAAGACAATAAAAAATGTGATTGTAGTTTTTAGATTTTGCATTTCCAAAAATATGTTTAATTGTAATTCTTAAGATAGCTTCTTGATCCTAAATATGTGTAATTGGGCGTGGGTGTGGGTTAGTATTCCGAGAACAGTAATACCTGAATTACTTCAATTAGTACCTAACACAAAAATTACTGTAATAATAAAAAAAGAAAGGTTCATCGACCTCAGTAGACCAATTGTAGAACAATTTTTTCTACCTGACAAAGTACACTCCATCAACAATAGCATGGAGATGGAGCTGTGTCTTTCGCGATCTCTGCTAATGGTGTTACATGAGGTGATGAGTCTTTCACAATGTTATGAGATCTGTTCATGAAAAGATATAGATTTTTCATGACATTATCCGAGTATGGGAACAGAGAGGGTATGGTTCTTCCACTTGCTAGCTCACTATTTAAATTTAGGAAAGTGGGTTTGTACAAATACGGATGGCTTAGATGAATATTGCAAAATATGGTAATGGAGGGAAGATGGGTCTTTCTGTTTCACGAGCTAGCTTATTAATTTGATTGTGGAAATGGGTTTTATGATGCTGCATTATATCTTGTTCGGTTTGGAATGGCATTTATTCGTTTGTCATCCTTTTTTCAACATATTAAATTATTTGGCATTCAGGTCGCGATGGAGACGGAGGGTTTTGCTATCTATGATGCTATGATGCAGTTAAAAAATGAGGTGTGTTTTCTTGCGAAACCATTCCGTTTATTCCTACTATTCTTTTGCTGGCAAGATGACAACTAGATGCATTGTGGAGTCTGGAATTACTGGTTAATTTCATTGATTGGTATCTTAGTGTAAGTTATCACTGCACCTAGGGTATGGACTCTCTGGTCATGTCCACATATGGTAGGCACTTGAAATTTCTAGTGTTGTAGGTGCAACAACTGGCCTGAGAAATGACATGCTGATTGACCTCTTTTGCTCCAGACTAATAATTTTAGTTTTGTAAAAAAGATTGAAAGAAAATATTTCTGTAATGTTGGTAGTGTCCTTGGAAATAATTATGCTTTTGTTGTTTGAATCTCTTGCTGGTTTTGTGAAAATTTTATCATCTTTCCATTTGTAAAACATGATACCAAATATCTCATACAGATACACACATTGACTGTTGGAGCTGCCATAGGTCAAGCTTGTCTATTGCTTGCTGCAGGAACTAAAGGCAAACGTTTTATGATGCCACATTCCAAAGGTTTGATGCTTTTGGCACGTTACTTTCTGTTTTTGAATTGGTAACTATACTCTCTCGTATAGAATAATCAAATTTTCCCTCGAATTCATTCCAGCCATGATACAGCAGCCTCGTGTCCCTTCATCTGGTTTGATGCCTGCTAGTGACATTCTGATTCGCGCAAAAGAGGTCAAGATCCTTCTATTGCTTGATAATTTATTTGAAGTAGAACTCAGTTTCTATGACACTGATTTTTGATGGAGCTCTTAGCACTTCGATTCAAGTAGTGAAAAAGGAACTATTCAAAGTCTCAATCAAGTAACCACAGTTGATTTTTTTTTTTTTTTTTTTGCAATGACGATTTGCGCATCGTCATATATCTCGAGTGAATTGGAATTAACTGGTAGATTTGTATCTTATTCCCAAAAAATTTCAAGGGAATTTCCCCCCTACAAGGATACAAGTTGAGCTTTCTATTTCATCTCGTCTTTCAGGTGATAACAAACAGGGACACACTAGTGGAACTCCTAGCAAAGCACACTGGAAATGTAAGCCTAGACCACATTTGTTTCTACTCTTTTCTATGAACTCCAGACACGACATTCCATATAATTCCTTGTACAATCTTAATATTGTCAGTCACTAGAGACAGTAGCTAATGCGATGAAAAGACCATTCTACATGGACGCAATAAAAGCAAAAGAATTTGGAGTTATCGACAAGGTAAATTAACGCACAGATCTTTTTTGGGTTGTAACACGATGCGCTTGCCTCGTTGCTTATGCCTGTAGATTATAATCTAAGTTGGCAACATGTCTCCAGATTCTTTGGCGAGGTCAGGAGAAGATTATGGCTGAAGTGGCTTCCCCGGAGGATTGGGACAAAGGAGCTGGCATCAAAGCTGTTGATGAACTCTAAATCCCCTCTCAGATCTACTCTTCATTCATAGCAAGTAAGCCTATTGTTTCTCCTTTTTGCAAACTCAAATGCCTTGTTCCTTTTTTCAGTATTCAACGTGCAGATGTGTTGTAAAGCCAATAGAATTTAATCTTTCCTTTTGAAGCATGGTTTCATTGAAATTGAAATTTGGGTAGAATGAGAAGCATAATTTTTTTAGTACAAGGTGTCTCCCATCTCCGTAGGGCATATAGATGCGTAATATCATTTAGTTGTTGAAGTGAGGAAATATTTGCTTAGCTCAGTTGAAACCTTTAGCAATAATACCATCCCAATTATGTAAAATATGAAGCCTCGTGCAAGTTTTTTGAACAAGTTTTTGGATGACAAACCTAAGGGTTCTCTTATTTTCTCTTATGGATGATAGAGACAATATTGATGATAGCGATATTGATCATAGTGGCGATACTGATGATAGCGACGATATCGAACGTGACCTTGAAATGAAGCTGGAGTTTCTAGCTATGATGAATGTGTCGCTAATTATGGATATGATGCGGGAAACAGACTGATTTTATATCGGTTCAGGTTAGCTAAAACAATGTCTCTTGCACAATATTGATTTCAAATATATCGTGGAATTACGGAGACATGTATTTAAACAATTTTCTAGGCGTTAAAGAATATCCCGTTAAAAAATTCCTATTTAACTTCCTTCCAAAGTGATACAAAAAGAAGAGAAAAAAAGGAATAAGGATATGATCAAACTTTTCTTTAGATGCAACAACAAACCAACTTTTAATGCATTTCTCCATTGCTAATATTGATTAAGATTGAACATAGGTTATTTTATTCACTTTTTTTTCAGTTATTTATTTGTCATATTTTGCTTTAAAATTTTAAAATTTAGGAATTAATAATTTTAATAGGTAATTTTTCAAAAGCTAATATTTTTTACTTTAATATTAGTTTTCTAGAGGAAAAGAAAAATTCAATTAATAGAAAATTATAGAAAAAGAATTATTATATAGTACTTAAAAGGGTCGGCCATTGCCTAATTCACACGTGGCATTTATTGATTTGTTAGTTGTTACTAATTGGACTTGCATTAAAGGAATTATTCAAAAAACGCGGTTTTCCCAATTTGCCA

mRNA sequence

TACAATTTTCACGTCTCTGAAAACTCGAGAAGAAGCTAAAATCCTAGAAAATGGCCACCGGGATGAAGCTCCCCATGGCTGTTAGCTTGCAGAAACCCATGGCTATGGCGGTTCCATCTTCCTCATCTCGTCTCCCTAGAGGGATCAATTTCAGGACTTGTTGCAGCATGAACGCTACAAGTAAAGCGAAAATCCCTTTACCTCCGATAAACCCAAAGGATCCATTTCTTTCGAAGCTCGCTTCAGTAGCTTCAACCTCACCTGAAACGTTGCTAAGCCGCCCTGGAAATTCCGATTCTCTTCCATATTTGGATATTTTTGATTCTCCTCAGCTCATGGCTGCGCCTGCCCAAGTCGAAAGATCAGTTTCCTACAACGAGCATAGGTCGAGGAGGCCGCCGCCTGACTTGCCGTCTCTGTTACTTCATGGAAGAATTGTTTACATCGGAATGCCTTTGGTTCCAGCTGTCACGGAGCTAGTTATTGCTCAACTGATGTACTTGCAATGGATGGATCCAAAAGAACCAATATATATTTATATAAACTCCTCAGGAACAACTCGTGATGATGGTGAAACTGTCGCGATGGAGACGGAGGGTTTTGCTATCTATGATGCTATGATGCAGTTAAAAAATGAGATACACACATTGACTGTTGGAGCTGCCATAGGTCAAGCTTGTCTATTGCTTGCTGCAGGAACTAAAGGCAAACGTTTTATGATGCCACATTCCAAAGCCATGATACAGCAGCCTCGTGTCCCTTCATCTGGTTTGATGCCTGCTAGTGACATTCTGATTCGCGCAAAAGAGGTGATAACAAACAGGGACACACTAGTGGAACTCCTAGCAAAGCACACTGGAAATTCACTAGAGACAGTAGCTAATGCGATGAAAAGACCATTCTACATGGACGCAATAAAAGCAAAAGAATTTGGAGTTATCGACAAGATTCTTTGGCGAGGTCAGGAGAAGATTATGGCTGAAGTGGCTTCCCCGGAGGATTGGGACAAAGGAGCTGGCATCAAAGCTGTTGATGAACTCTAAATCCCCTCTCAGATCTACTCTTCATTCATAGCAAAGACAATATTGATGATAGCGATATTGATCATAGTGGCGATACTGATGATAGCGACGATATCGAACGTGACCTTGAAATGAAGCTGGAGTTTCTAGCTATGATGAATGTGTCGCTAATTATGGATATGATGCGGGAAACAGACTGATTTTATATCGGTTCAGGTTAGCTAAAACAATGTCTCTTGCACAATATTGATTTCAAATATATCGTGGAATTACGGAGACATGTATTTAAACAATTTTCTAGGCGTTAAAGAATATCCCGTTAAAAAATTCCTATTTAACTTCCTTCCAAAGTGATACAAAAAGAAGAGAAAAAAAGGAATAAGGATATGATCAAACTTTTCTTTAGATGCAACAACAAACCAACTTTTAATGCATTTCTCCATTGCTAATATTGATTAAGATTGAACATAGGTTATTTTATTCACTTTTTTTTCAGTTATTTATTTGTCATATTTTGCTTTAAAATTTTAAAATTTAGGAATTAATAATTTTAATAGGTAATTTTTCAAAAGCTAATATTTTTTACTTTAATATTAGTTTTCTAGAGGAAAAGAAAAATTCAATTAATAGAAAATTATAGAAAAAGAATTATTATATAGTACTTAAAAGGGTCGGCCATTGCCTAATTCACACGTGGCATTTATTGATTTGTTAGTTGTTACTAATTGGACTTGCATTAAAGGAATTATTCAAAAAACGCGGTTTTCCCAATTTGCCA

Coding sequence (CDS)

ATGGCCACCGGGATGAAGCTCCCCATGGCTGTTAGCTTGCAGAAACCCATGGCTATGGCGGTTCCATCTTCCTCATCTCGTCTCCCTAGAGGGATCAATTTCAGGACTTGTTGCAGCATGAACGCTACAAGTAAAGCGAAAATCCCTTTACCTCCGATAAACCCAAAGGATCCATTTCTTTCGAAGCTCGCTTCAGTAGCTTCAACCTCACCTGAAACGTTGCTAAGCCGCCCTGGAAATTCCGATTCTCTTCCATATTTGGATATTTTTGATTCTCCTCAGCTCATGGCTGCGCCTGCCCAAGTCGAAAGATCAGTTTCCTACAACGAGCATAGGTCGAGGAGGCCGCCGCCTGACTTGCCGTCTCTGTTACTTCATGGAAGAATTGTTTACATCGGAATGCCTTTGGTTCCAGCTGTCACGGAGCTAGTTATTGCTCAACTGATGTACTTGCAATGGATGGATCCAAAAGAACCAATATATATTTATATAAACTCCTCAGGAACAACTCGTGATGATGGTGAAACTGTCGCGATGGAGACGGAGGGTTTTGCTATCTATGATGCTATGATGCAGTTAAAAAATGAGATACACACATTGACTGTTGGAGCTGCCATAGGTCAAGCTTGTCTATTGCTTGCTGCAGGAACTAAAGGCAAACGTTTTATGATGCCACATTCCAAAGCCATGATACAGCAGCCTCGTGTCCCTTCATCTGGTTTGATGCCTGCTAGTGACATTCTGATTCGCGCAAAAGAGGTGATAACAAACAGGGACACACTAGTGGAACTCCTAGCAAAGCACACTGGAAATTCACTAGAGACAGTAGCTAATGCGATGAAAAGACCATTCTACATGGACGCAATAAAAGCAAAAGAATTTGGAGTTATCGACAAGATTCTTTGGCGAGGTCAGGAGAAGATTATGGCTGAAGTGGCTTCCCCGGAGGATTGGGACAAAGGAGCTGGCATCAAAGCTGTTGATGAACTCTAA

Protein sequence

MATGMKLPMAVSLQKPMAMAVPSSSSRLPRGINFRTCCSMNATSKAKIPLPPINPKDPFLSKLASVASTSPETLLSRPGNSDSLPYLDIFDSPQLMAAPAQVERSVSYNEHRSRRPPPDLPSLLLHGRIVYIGMPLVPAVTELVIAQLMYLQWMDPKEPIYIYINSSGTTRDDGETVAMETEGFAIYDAMMQLKNEIHTLTVGAAIGQACLLLAAGTKGKRFMMPHSKAMIQQPRVPSSGLMPASDILIRAKEVITNRDTLVELLAKHTGNSLETVANAMKRPFYMDAIKAKEFGVIDKILWRGQEKIMAEVASPEDWDKGAGIKAVDEL

Homology

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BLAST of Cp4.1LG11g09070 vs. Swiss-Prot
Match: CLPR3_ARATH (ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic OS=Arabidopsis thaliana GN=CLPR3 PE=1 SV=1)

HSP 1 Score: 482.3 bits (1240), Expect = 4.4e-135
Identity = 246/329 (74.77%), Postives = 281/329 (85.41%), Query Frame = 1


Query: 9   MAVSLQKPMAMAVPSSSSRLPRGI---------NFRTC-CSMNATSKAKIPLPPINPKDP 68
           MA  LQ  M   +P SSS  P            N +T   +  A + AKIP+PPINPKDP
Sbjct: 1   MASCLQASMNSLLPRSSSFSPHPPLSSNSSGRRNLKTFRYAFRAKASAKIPMPPINPKDP 60

Query: 69  FLSKLASVASTSPETLLSRPGNSDSLPYLDIFDSPQLMAAPAQVERSVSYNEHRSRRPPP 128
           FLS LAS+A+ SPE LL+RP N+D  PYLDIFDSPQLM++PAQVERSV+YNEHR R PPP
Sbjct: 61  FLSTLASIAANSPEKLLNRPVNADVPPYLDIFDSPQLMSSPAQVERSVAYNEHRPRTPPP 120

Query: 129 DLPSLLLHGRIVYIGMPLVPAVTELVIAQLMYLQWMDPKEPIYIYINSSGTTRDDGETVA 188
           DLPS+LL GRIVYIGMPLVPAVTELV+A+LMYLQW+DPKEPIYIYINS+GTTRDDGETV 
Sbjct: 121 DLPSMLLDGRIVYIGMPLVPAVTELVVAELMYLQWLDPKEPIYIYINSTGTTRDDGETVG 180

Query: 189 METEGFAIYDAMMQLKNEIHTLTVGAAIGQACLLLAAGTKGKRFMMPHSKAMIQQPRVPS 248
           ME+EGFAIYD++MQLKNE+HT+ VGAAIGQACLLL+AGTKGKRFMMPH+KAMIQQPRVPS
Sbjct: 181 MESEGFAIYDSLMQLKNEVHTVCVGAAIGQACLLLSAGTKGKRFMMPHAKAMIQQPRVPS 240

Query: 249 SGLMPASDILIRAKEVITNRDTLVELLAKHTGNSLETVANAMKRPFYMDAIKAKEFGVID 308
           SGLMPASD+LIRAKEVITNRD LVELL+KHTGNS+ETVAN M+RP+YMDA KAKEFGVID
Sbjct: 241 SGLMPASDVLIRAKEVITNRDILVELLSKHTGNSVETVANVMRRPYYMDAPKAKEFGVID 300

Query: 309 KILWRGQEKIMAEVASPEDWDKGAGIKAV 328
           +ILWRGQEKI+A+V   E++DK AGIK+V
Sbjct: 301 RILWRGQEKIIADVVPSEEFDKNAGIKSV 329

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BLAST of Cp4.1LG11g09070 vs. Swiss-Prot
Match: CLPR_SYNY3 (Putative ATP-dependent Clp protease proteolytic subunit-like OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=clpR PE=3 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 2.5e-45
Identity = 96/208 (46.15%), Postives = 140/208 (67.31%), Query Frame = 1


Query: 104 RSVSYNEHRSRRPPPDLPSLLLHGRIVYIGMPLVPA----------VTELVIAQLMYLQW 163
           +S  Y +   + PPPDL SLLL  RIVY+GMPL  +          VT+L+IAQL+YLQ+
Sbjct: 7   QSSYYGDMAFKTPPPDLESLLLKERIVYLGMPLFSSDEVKQQVGIDVTQLIIAQLLYLQF 66

Query: 164 MDPKEPIYIYINSSGTTRDDGETVAMETEGFAIYDAMMQLKNEIHTLTVGAAIGQACLLL 223
            DP +PIY YINS+GT+   G+ V  ETE FAI D +  +K  +HT+ +G A+G A ++L
Sbjct: 67  DDPDKPIYFYINSTGTSWYTGDAVGFETEAFAICDTLNYIKPPVHTICIGQAMGTAAMIL 126

Query: 224 AAGTKGKRFMMPHSKAMIQQPRVPSSGLMPASDILIRAKEVITNRDTLVELLAKHTGNSL 283
           ++GTKG R  +PH+  ++ Q R  + G   A+DI IRAKEVI+N+ T++E+L+ +TG + 
Sbjct: 127 SSGTKGYRASLPHATIVLNQNRTGAQG--QATDIQIRAKEVISNKQTMLEILSLNTGQTQ 186

Query: 284 ETVANAMKRPFYMDAIKAKEFGVIDKIL 302
           E +A  M R FY+   +AKE+G+ID++L
Sbjct: 187 EKLAKDMDRTFYLTPAQAKEYGLIDRVL 212

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BLAST of Cp4.1LG11g09070 vs. Swiss-Prot
Match: CLPR_SYNE7 (Putative ATP-dependent Clp protease proteolytic subunit-like OS=Synechococcus elongatus (strain PCC 7942) GN=clpR PE=3 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 2.1e-44
Identity = 94/216 (43.52%), Postives = 138/216 (63.89%), Query Frame = 1


Query: 96  MAAPAQVERSVSYNEHRSRRPPPDLPSLLLHGRIVYIGMPLVPA----------VTELVI 155
           M    Q  ++  Y +   R PPPDLPSLLL  RI+Y+GMPL  +          VTEL+I
Sbjct: 1   MLESIQAVQAPYYGDVSYRTPPPDLPSLLLKERIIYLGMPLFSSDDVKRQVGFDVTELII 60

Query: 156 AQLMYLQWMDPKEPIYIYINSSGTTRDDGETVAMETEGFAIYDAMMQLKNEIHTLTVGAA 215
           AQL+YL++ +P++PIY YINS+GT+   G+ +  ETE FAI D M  +K  +HT+ +G A
Sbjct: 61  AQLLYLEFDNPEKPIYFYINSTGTSWYTGDAIGYETEAFAICDTMRYIKPPVHTICIGQA 120

Query: 216 IGQACLLLAAGTKGKRFMMPHSKAMIQQPRVPSSGLMPASDILIRAKEVITNRDTLVELL 275
           +G A ++L+ GT G R  +PH+  ++ QPR  + G   ASDI IRAKEV+ N+ T++E+ 
Sbjct: 121 MGTAAMILSGGTPGNRASLPHATIVLNQPRTGAQG--QASDIQIRAKEVLANKRTMLEIF 180

Query: 276 AKHTGNSLETVANAMKRPFYMDAIKAKEFGVIDKIL 302
           A++TG   + +A    R  YM   +A E+G+ID++L
Sbjct: 181 ARNTGQDPDRLARDTDRMLYMTPAQAVEYGLIDRVL 214

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BLAST of Cp4.1LG11g09070 vs. Swiss-Prot
Match: CLPR1_ARATH (ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic OS=Arabidopsis thaliana GN=CLPR1 PE=1 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 6.7e-43
Identity = 94/190 (49.47%), Postives = 127/190 (66.84%), Query Frame = 1


Query: 112 RSRRPPPDLPSLLLHGRIVYIGMPLVPAVTELVIAQLMYLQWMDPKEPIYIYINSSGTTR 171
           R R  PPDLPSLLL  RI Y+GMP+VPAVTEL++AQ M+L + +P +PIY+YINS GT  
Sbjct: 164 RPRTAPPDLPSLLLDARICYLGMPIVPAVTELLVAQFMWLDYDNPTKPIYLYINSPGTQN 223

Query: 172 DDGETVAMETEGFAIYDAMMQLKNEIHTLTVGAAIGQACLLLAAGTKGKRFMMPHSKAMI 231
           +  ETV  ETE +AI D +   K++++T+  G A GQA +LL+ G KG R + PHS   +
Sbjct: 224 EKMETVGSETEAYAIADTISYCKSDVYTINCGMAFGQAAMLLSLGKKGYRAVQPHSSTKL 283

Query: 232 QQPRV-PSSGLMPASDILIRAKEVITNRDTLVELLAKHTGNSLETVANAMKRPFYMDAIK 291
             P+V  SSG   A D+ I+AKE+  N +  +ELLAK TG S E +   +KRP Y+ A  
Sbjct: 284 YLPKVNRSSG--AAIDMWIKAKELDANTEYYIELLAKGTGKSKEQINEDIKRPKYLQAQA 343

Query: 292 AKEFGVIDKI 301
           A ++G+ DKI
Sbjct: 344 AIDYGIADKI 351

[Close]

BLAST of Cp4.1LG11g09070 vs. Swiss-Prot
Match: CLPR4_ARATH (ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic OS=Arabidopsis thaliana GN=CLPR4 PE=1 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 9.7e-42
Identity = 92/188 (48.94%), Postives = 126/188 (67.02%), Query Frame = 1


Query: 115 RPPPDLPSLLLHGRIVYIGMPLVPAVTELVIAQLMYLQWMDPKEPIYIYINSSGTTRDDG 174
           +PPPDL S L   RIVY+GM LVP+VTEL++A+ +YLQ+ D ++PIY+YINS+GTT+ +G
Sbjct: 101 QPPPDLASYLFKNRIVYLGMSLVPSVTELILAEFLYLQYEDEEKPIYLYINSTGTTK-NG 160

Query: 175 ETVAMETEGFAIYDAMMQLKNEIHTLTVGAAIGQACLLLAAGTKGKRFMMPHSKAMIQQP 234
           E +  +TE FAIYD M  +K  I TL VG A G+A LLL AG KG R  +P S  MI+QP
Sbjct: 161 EKLGYDTEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLTAGAKGNRSALPSSTIMIKQP 220

Query: 235 RVPSSGLMPASDILIRAKEVITNRDTLVELLAKHTGNSLETVANAMKRPFYMDAIKAKEF 294
                G   A+D+ I  KE+   +  +V+L +KH G S E +   MKRP Y    +A E+
Sbjct: 221 IARFQG--QATDVEIARKEIKHIKTEMVKLYSKHIGKSPEQIEADMKRPKYFSPTEAVEY 280

Query: 295 GVIDKILW 303
           G+IDK+++
Sbjct: 281 GIIDKVVY 285

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BLAST of Cp4.1LG11g09070 vs. TrEMBL
Match: A0A0A0LLW4_CUCSA (ATP-dependent Clp protease proteolytic subunit OS=Cucumis sativus GN=Csa_2G031150 PE=3 SV=1)

HSP 1 Score: 555.8 bits (1431), Expect = 3.5e-155
Identity = 276/330 (83.64%), Postives = 305/330 (92.42%), Query Frame = 1


Query: 1   MATGMKLPMAVSLQKPMAMAVPSSSSRLPRGINFRTCCSMNATSKAKIPLPPINPKDPFL 60
           MATGMKLPM V+LQKPMAMA PSSS  L R INFRT   +NATS AK+PLPPINPKDPFL
Sbjct: 1   MATGMKLPMTVTLQKPMAMAAPSSSFSLHRAINFRTVSCLNATSNAKVPLPPINPKDPFL 60

Query: 61  SKLASVASTSPETLLSRPGNSDSLPYLDIFDSPQLMAAPAQVERSVSYNEHRSRRPPPDL 120
           SKLASVASTSPETLL+RP NS+S PYLDIFD+P+LMAAPAQVERS+SYNEHRSRRPPPDL
Sbjct: 61  SKLASVASTSPETLLNRPANSESPPYLDIFDAPRLMAAPAQVERSISYNEHRSRRPPPDL 120

Query: 121 PSLLLHGRIVYIGMPLVPAVTELVIAQLMYLQWMDPKEPIYIYINSSGTTRDDGETVAME 180
           PSLLLHGRIVYIGMPLVPAVTELVIAQ+MYLQWMDPKEP+Y+YINS+GTTRDDGE VAME
Sbjct: 121 PSLLLHGRIVYIGMPLVPAVTELVIAQIMYLQWMDPKEPMYLYINSTGTTRDDGEVVAME 180

Query: 181 TEGFAIYDAMMQLKNEIHTLTVGAAIGQACLLLAAGTKGKRFMMPHSKAMIQQPRVPSSG 240
           +EGFAIYDA+MQ KNEIHT+ VGAA+G ACLLLAAGTKG+R+ MPH+KAMIQQP VPS G
Sbjct: 181 SEGFAIYDALMQSKNEIHTVNVGAAVGHACLLLAAGTKGRRYSMPHAKAMIQQPSVPSYG 240

Query: 241 LMPASDILIRAKEVITNRDTLVELLAKHTGNSLETVANAMK-RPFYMDAIKAKEFGVIDK 300
           LMPASD++IRAKEV+TNRDTLV+LLAKHT NS+ETVAN MK  P+YMD++KAKEFGVIDK
Sbjct: 241 LMPASDVIIRAKEVLTNRDTLVKLLAKHTENSVETVANVMKGGPYYMDSVKAKEFGVIDK 300

Query: 301 ILWRGQEKIMAEVASPEDWDKGAGIKAVDE 330
           ILWRGQEKIMA++ASPEDWDKGAGIK  DE
Sbjct: 301 ILWRGQEKIMADMASPEDWDKGAGIKVQDE 330

[Close]

BLAST of Cp4.1LG11g09070 vs. TrEMBL
Match: W9RRY1_9ROSA (ATP-dependent Clp protease proteolytic subunit OS=Morus notabilis GN=L484_010822 PE=3 SV=1)

HSP 1 Score: 530.4 bits (1365), Expect = 1.6e-147
Identity = 268/331 (80.97%), Postives = 293/331 (88.52%), Query Frame = 1


Query: 9   MAVSLQKPMAMAVPSSSS---------RLPRGINFRTCCSMNATSKAKIPLPPINPKDPF 68
           M + LQ P+  ++PSSSS         R PR  NFRT CS NA +KAKIP+PPINPKDPF
Sbjct: 1   MVMGLQLPITNSLPSSSSSSSPFFLGPRNPR--NFRTFCSFNAKAKAKIPVPPINPKDPF 60

Query: 69  LSKLASVASTSPETLLSRPGNSDSLPYLDIFDSPQLMAAPAQVERSVSYNEHRSRRPPPD 128
           LSKLASVA+TSPETLL RP NS+S PYLD+FD+P+LMA PAQVERSVSYN+ R   PPPD
Sbjct: 61  LSKLASVAATSPETLLDRPVNSESPPYLDLFDAPKLMATPAQVERSVSYNDQRPSTPPPD 120

Query: 129 LPSLLLHGRIVYIGMPLVPAVTELVIAQLMYLQWMDPKEPIYIYINSSGTTRDDGETVAM 188
           LPSLLLHGRIVYIGMPLVPAVTELV+A+LMYLQWMDPKEPIYIYINS+GTTRDDGETV M
Sbjct: 121 LPSLLLHGRIVYIGMPLVPAVTELVVAELMYLQWMDPKEPIYIYINSTGTTRDDGETVGM 180

Query: 189 ETEGFAIYDAMMQLKNEIHTLTVGAAIGQACLLLAAGTKGKRFMMPHSKAMIQQPRVPSS 248
           ETEGFAIYDAMMQLKNEIHT+ VGAAIGQACLLL AGTKGKRFMMPH+KAMIQQPRVPSS
Sbjct: 181 ETEGFAIYDAMMQLKNEIHTVAVGAAIGQACLLLLAGTKGKRFMMPHAKAMIQQPRVPSS 240

Query: 249 GLMPASDILIRAKEVITNRDTLVELLAKHTGNSLETVANAMKRPFYMDAIKAKEFGVIDK 308
           GLMPASD+LIRAKE++TNRDTLV+LLAKHTGNS ETVAN M+RPFYMDA KAKEFGVIDK
Sbjct: 241 GLMPASDVLIRAKEIVTNRDTLVKLLAKHTGNSEETVANVMRRPFYMDATKAKEFGVIDK 300

Query: 309 ILWRGQEKIMAEVASPEDWDKGAGIKAVDEL 331
           +LWRGQEKIM++VA PEDWDK AGIK VD L
Sbjct: 301 VLWRGQEKIMSDVAPPEDWDKSAGIKVVDGL 329

[Close]

BLAST of Cp4.1LG11g09070 vs. TrEMBL
Match: D7U9V6_VITVI (ATP-dependent Clp protease proteolytic subunit OS=Vitis vinifera GN=VIT_14s0060g02160 PE=3 SV=1)

HSP 1 Score: 529.3 bits (1362), Expect = 3.5e-147
Identity = 264/320 (82.50%), Postives = 287/320 (89.69%), Query Frame = 1


Query: 9   MAVSLQKPMAMAVPSSSSRLPRGINFRTCCSMNATSKAKIPLPPINPKDPFLSKLASVAS 68
           MA SLQ PMA ++PSSSS       F+T CSM  T  AKIP+ PINPKDPFLSKLASVA+
Sbjct: 1   MAASLQLPMASSIPSSSSPSTTRPIFKTHCSMKPTCSAKIPMSPINPKDPFLSKLASVAA 60

Query: 69  TSPETLLSRPGNSDSLPYLDIFDSPQLMAAPAQVERSVSYNEHRSRRPPPDLPSLLLHGR 128
           TSPE LL RP  SDSLP+LD+FDSP+LMA PAQVERSVSYNEHR RRPPPDLPSLLLHGR
Sbjct: 61  TSPERLLQRPSGSDSLPFLDLFDSPKLMATPAQVERSVSYNEHRPRRPPPDLPSLLLHGR 120

Query: 129 IVYIGMPLVPAVTELVIAQLMYLQWMDPKEPIYIYINSSGTTRDDGETVAMETEGFAIYD 188
           IVYIGMPLVPAVTELVIA+LMYLQWMDPKEP+Y+YIN +GTTRDDGE V METEGFAIYD
Sbjct: 121 IVYIGMPLVPAVTELVIAELMYLQWMDPKEPVYVYINCTGTTRDDGERVGMETEGFAIYD 180

Query: 189 AMMQLKNEIHTLTVGAAIGQACLLLAAGTKGKRFMMPHSKAMIQQPRVPSSGLMPASDIL 248
           AMMQLKNEIHT+ VGAAIGQACLLLAAGTKGKRFMMPH+KAMIQQPRVPSSGLMPASD+L
Sbjct: 181 AMMQLKNEIHTVAVGAAIGQACLLLAAGTKGKRFMMPHAKAMIQQPRVPSSGLMPASDVL 240

Query: 249 IRAKEVITNRDTLVELLAKHTGNSLETVANAMKRPFYMDAIKAKEFGVIDKILWRGQEKI 308
           IRAKEVITNRDTLV+LLAKHTGNS ETV+  M+RP+YMD+ KAKEFGVIDKILWRGQEKI
Sbjct: 241 IRAKEVITNRDTLVKLLAKHTGNSEETVSTVMRRPYYMDSTKAKEFGVIDKILWRGQEKI 300

Query: 309 MAEVASPEDWDKGAGIKAVD 329
           MA+V SPE+WDK AGI+ VD
Sbjct: 301 MADVLSPEEWDKNAGIQVVD 320

[Close]

BLAST of Cp4.1LG11g09070 vs. TrEMBL
Match: A0A164VKK8_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_022148 PE=4 SV=1)

HSP 1 Score: 525.0 bits (1351), Expect = 6.5e-146
Identity = 259/328 (78.96%), Postives = 291/328 (88.72%), Query Frame = 1


Query: 1   MATGMKLPMAVSLQKPMAMAVPSSSSRLPRGINFRTCCSMNATSKAKIPLPPINPKDPFL 60
           MAT +++PMA S+         SSS +  +  +F+ C ++N+ + AKIPLPPINP DPFL
Sbjct: 1   MATALRIPMASSIS-----CCSSSSPQSMKRCSFKPCAALNSRNSAKIPLPPINPNDPFL 60

Query: 61  SKLASVASTSPETLLSRPGNSDSLPYLDIFDSPQLMAAPAQVERSVSYNEHRSRRPPPDL 120
           S+LASVA+ SPE LL+RP NSD+ PYLDIFDSP LMA PAQVERSVSYNEHR RRPPPDL
Sbjct: 61  SRLASVAANSPEKLLNRPANSDTPPYLDIFDSPTLMATPAQVERSVSYNEHRPRRPPPDL 120

Query: 121 PSLLLHGRIVYIGMPLVPAVTELVIAQLMYLQWMDPKEPIYIYINSSGTTRDDGETVAME 180
           PSLLLHGRIVYIGMPLVPAVTELV+A+LMYLQWMDPK+PIY+YINS+GTTRDDGETV ME
Sbjct: 121 PSLLLHGRIVYIGMPLVPAVTELVVAELMYLQWMDPKDPIYLYINSTGTTRDDGETVGME 180

Query: 181 TEGFAIYDAMMQLKNEIHTLTVGAAIGQACLLLAAGTKGKRFMMPHSKAMIQQPRVPSSG 240
           TEGFAIYDAMMQLKNEIHT+ VGAAIGQACLLLAAG+KGKRFMMPH+KAMIQQPRVPSSG
Sbjct: 181 TEGFAIYDAMMQLKNEIHTVAVGAAIGQACLLLAAGSKGKRFMMPHAKAMIQQPRVPSSG 240

Query: 241 LMPASDILIRAKEVITNRDTLVELLAKHTGNSLETVANAMKRPFYMDAIKAKEFGVIDKI 300
           LMPASD+LIRAKEV+ NRDTLVELLAKHTGNS+E VAN M+RPFYMD+ +AKEFGVIDKI
Sbjct: 241 LMPASDVLIRAKEVVINRDTLVELLAKHTGNSIEAVANVMRRPFYMDSTRAKEFGVIDKI 300

Query: 301 LWRGQEKIMAEVASPEDWDKGAGIKAVD 329
           LWRGQEKIMA+ ASPEDWDK AGIK +D
Sbjct: 301 LWRGQEKIMADAASPEDWDKNAGIKVLD 323

[Close]

BLAST of Cp4.1LG11g09070 vs. TrEMBL
Match: M5WBU1_PRUPE (ATP-dependent Clp protease proteolytic subunit OS=Prunus persica GN=PRUPE_ppa008579mg PE=3 SV=1)

HSP 1 Score: 518.1 bits (1333), Expect = 8.0e-144
Identity = 258/331 (77.95%), Postives = 292/331 (88.22%), Query Frame = 1


Query: 1   MATGMKLPMAVSLQKPMAMAVPSSSSRLPRGINFRTCCSMNATSKAKIPLPPINPKDPFL 60
           MAT + LP+++S       A  SSS R      F   CS+N+ +K KIP+PPINPKDPFL
Sbjct: 1   MATSLHLPISIS-------ATSSSSLRAKNTRRFAAFCSINSKAKVKIPIPPINPKDPFL 60

Query: 61  SKLASVASTSPETLLSRP-GNSDSLPYLDIFDSPQLMAAPAQVERSVSYNEHRSRRPPPD 120
           S+L+SVA+ SPETLL+RP  NSDSLPYLD+FD P+LMA PAQVERSVSYNEHR R+PPPD
Sbjct: 61  SRLSSVAANSPETLLNRPVQNSDSLPYLDLFDEPKLMATPAQVERSVSYNEHRPRKPPPD 120

Query: 121 LPSLLLHGRIVYIGMPLVPAVTELVIAQLMYLQWMDPKEPIYIYINSSGTTRDDGETVAM 180
           LPSLLLHGRIVYIGMPLVPAVTELV+A+LMYLQWMDPK+PIYIYINS+GTTRDDGETV M
Sbjct: 121 LPSLLLHGRIVYIGMPLVPAVTELVVAELMYLQWMDPKQPIYIYINSTGTTRDDGETVGM 180

Query: 181 ETEGFAIYDAMMQLKNEIHTLTVGAAIGQACLLLAAGTKGKRFMMPHSKAMIQQPRVPSS 240
           E+EGFAIYDAMMQLKNEIHT+ VGAAIGQACLLL+AGTKGKRFMMPH+KAMIQQPRVPSS
Sbjct: 181 ESEGFAIYDAMMQLKNEIHTVAVGAAIGQACLLLSAGTKGKRFMMPHAKAMIQQPRVPSS 240

Query: 241 GLMPASDILIRAKEVITNRDTLVELLAKHTGNSLETVANAMKRPFYMDAIKAKEFGVIDK 300
           GLMPASD+LIRAKEV+TNRD L++LLAKHTGNS+E V N M+RP+YMD+  AKEFGVIDK
Sbjct: 241 GLMPASDVLIRAKEVMTNRDILIKLLAKHTGNSVEAVTNVMRRPYYMDSTTAKEFGVIDK 300

Query: 301 ILWRGQEKIMAEVASPEDWDKGAGIKAVDEL 331
           ILWRGQEKIMA+VASPE+WDK AG+K VDEL
Sbjct: 301 ILWRGQEKIMADVASPEEWDKKAGVKVVDEL 324

[Close]

BLAST of Cp4.1LG11g09070 vs. TAIR10
Match: AT1G09130.3 (AT1G09130.3 ATP-dependent caseinolytic (Clp) protease/crotonase family protein)

HSP 1 Score: 480.7 bits (1236), Expect = 7.2e-136
Identity = 245/328 (74.70%), Postives = 280/328 (85.37%), Query Frame = 1


Query: 9   MAVSLQKPMAMAVPSSSSRLPRGI---------NFRTC-CSMNATSKAKIPLPPINPKDP 68
           MA  LQ  M   +P SSS  P            N +T   +  A + AKIP+PPINPKDP
Sbjct: 1   MASCLQASMNSLLPRSSSFSPHPPLSSNSSGRRNLKTFRYAFRAKASAKIPMPPINPKDP 60

Query: 69  FLSKLASVASTSPETLLSRPGNSDSLPYLDIFDSPQLMAAPAQVERSVSYNEHRSRRPPP 128
           FLS LAS+A+ SPE LL+RP N+D  PYLDIFDSPQLM++PAQVERSV+YNEHR R PPP
Sbjct: 61  FLSTLASIAANSPEKLLNRPVNADVPPYLDIFDSPQLMSSPAQVERSVAYNEHRPRTPPP 120

Query: 129 DLPSLLLHGRIVYIGMPLVPAVTELVIAQLMYLQWMDPKEPIYIYINSSGTTRDDGETVA 188
           DLPS+LL GRIVYIGMPLVPAVTELV+A+LMYLQW+DPKEPIYIYINS+GTTRDDGETV 
Sbjct: 121 DLPSMLLDGRIVYIGMPLVPAVTELVVAELMYLQWLDPKEPIYIYINSTGTTRDDGETVG 180

Query: 189 METEGFAIYDAMMQLKNEIHTLTVGAAIGQACLLLAAGTKGKRFMMPHSKAMIQQPRVPS 248
           ME+EGFAIYD++MQLKNE+HT+ VGAAIGQACLLL+AGTKGKRFMMPH+KAMIQQPRVPS
Sbjct: 181 MESEGFAIYDSLMQLKNEVHTVCVGAAIGQACLLLSAGTKGKRFMMPHAKAMIQQPRVPS 240

Query: 249 SGLMPASDILIRAKEVITNRDTLVELLAKHTGNSLETVANAMKRPFYMDAIKAKEFGVID 308
           SGLMPASD+LIRAKEVITNRD LVELL+KHTGNS+ETVAN M+RP+YMDA KAKEFGVID
Sbjct: 241 SGLMPASDVLIRAKEVITNRDILVELLSKHTGNSVETVANVMRRPYYMDAPKAKEFGVID 300

Query: 309 KILWRGQEKIMAEVASPEDWDKGAGIKA 327
           +ILWRGQEKI+A+V   E++DK AGIK+
Sbjct: 301 RILWRGQEKIIADVVPSEEFDKNAGIKS 328

[Close]

BLAST of Cp4.1LG11g09070 vs. TAIR10
Match: AT1G49970.1 (AT1G49970.1 CLP protease proteolytic subunit 1)

HSP 1 Score: 176.0 bits (445), Expect = 3.8e-44
Identity = 94/190 (49.47%), Postives = 127/190 (66.84%), Query Frame = 1


Query: 112 RSRRPPPDLPSLLLHGRIVYIGMPLVPAVTELVIAQLMYLQWMDPKEPIYIYINSSGTTR 171
           R R  PPDLPSLLL  RI Y+GMP+VPAVTEL++AQ M+L + +P +PIY+YINS GT  
Sbjct: 164 RPRTAPPDLPSLLLDARICYLGMPIVPAVTELLVAQFMWLDYDNPTKPIYLYINSPGTQN 223

Query: 172 DDGETVAMETEGFAIYDAMMQLKNEIHTLTVGAAIGQACLLLAAGTKGKRFMMPHSKAMI 231
           +  ETV  ETE +AI D +   K++++T+  G A GQA +LL+ G KG R + PHS   +
Sbjct: 224 EKMETVGSETEAYAIADTISYCKSDVYTINCGMAFGQAAMLLSLGKKGYRAVQPHSSTKL 283

Query: 232 QQPRV-PSSGLMPASDILIRAKEVITNRDTLVELLAKHTGNSLETVANAMKRPFYMDAIK 291
             P+V  SSG   A D+ I+AKE+  N +  +ELLAK TG S E +   +KRP Y+ A  
Sbjct: 284 YLPKVNRSSG--AAIDMWIKAKELDANTEYYIELLAKGTGKSKEQINEDIKRPKYLQAQA 343

Query: 292 AKEFGVIDKI 301
           A ++G+ DKI
Sbjct: 344 AIDYGIADKI 351

[Close]

BLAST of Cp4.1LG11g09070 vs. TAIR10
Match: AT4G17040.1 (AT4G17040.1 CLP protease R subunit 4)

HSP 1 Score: 172.2 bits (435), Expect = 5.4e-43
Identity = 92/188 (48.94%), Postives = 126/188 (67.02%), Query Frame = 1


Query: 115 RPPPDLPSLLLHGRIVYIGMPLVPAVTELVIAQLMYLQWMDPKEPIYIYINSSGTTRDDG 174
           +PPPDL S L   RIVY+GM LVP+VTEL++A+ +YLQ+ D ++PIY+YINS+GTT+ +G
Sbjct: 101 QPPPDLASYLFKNRIVYLGMSLVPSVTELILAEFLYLQYEDEEKPIYLYINSTGTTK-NG 160

Query: 175 ETVAMETEGFAIYDAMMQLKNEIHTLTVGAAIGQACLLLAAGTKGKRFMMPHSKAMIQQP 234
           E +  +TE FAIYD M  +K  I TL VG A G+A LLL AG KG R  +P S  MI+QP
Sbjct: 161 EKLGYDTEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLTAGAKGNRSALPSSTIMIKQP 220

Query: 235 RVPSSGLMPASDILIRAKEVITNRDTLVELLAKHTGNSLETVANAMKRPFYMDAIKAKEF 294
                G   A+D+ I  KE+   +  +V+L +KH G S E +   MKRP Y    +A E+
Sbjct: 221 IARFQG--QATDVEIARKEIKHIKTEMVKLYSKHIGKSPEQIEADMKRPKYFSPTEAVEY 280

Query: 295 GVIDKILW 303
           G+IDK+++
Sbjct: 281 GIIDKVVY 285

[Close]

BLAST of Cp4.1LG11g09070 vs. TAIR10
Match: AT5G23140.1 (AT5G23140.1 nuclear-encoded CLP protease P7)

HSP 1 Score: 132.5 bits (332), Expect = 4.8e-31
Identity = 82/214 (38.32%), Postives = 119/214 (55.61%), Query Frame = 1


Query: 110 EHRSRRPPP-DLPSLLLHGRIVYIGMPLVPAVTELVIAQLMYLQWMDPKEPIYIYINSSG 169
           EH SR     D+ S LL  RI+ I  P+    + +V+AQL+YL+  +P +PI++Y+NS G
Sbjct: 38  EHSSRGERAYDIFSRLLKERIICINGPINDDTSHVVVAQLLYLESENPSKPIHMYLNSPG 97

Query: 170 TTRDDGETVAMETEGFAIYDAMMQLKNEIHTLTVGAAIGQACLLLAAGTKGKRFMMPHSK 229
                       T G AIYD M  +++ I T+ +G A   A LLLAAG KG+R  +P++ 
Sbjct: 98  ---------GHVTAGLAIYDTMQYIRSPISTICLGQAASMASLLLAAGAKGQRRSLPNAT 157

Query: 230 AMIQQPRVPSSGLMPASDILIRAKEVITNRDTLVELLAKHTGNSLETVANAMKRPFYMDA 289
            MI QP    SG   A DI I  K+++   D L EL  KHTG  L+ VAN M R  +M  
Sbjct: 158 VMIHQPSGGYSG--QAKDITIHTKQIVRVWDALNELYVKHTGQPLDVVANNMDRDHFMTP 217

Query: 290 IKAKEFGVIDKILWRGQEKIMAEVASPEDWDKGA 323
            +AK FG+ID+++     +++ +    E  DK +
Sbjct: 218 EEAKAFGIIDEVIDERPLELVKDAVGNESKDKSS 240

[Close]

BLAST of Cp4.1LG11g09070 vs. TAIR10
Match: AT5G45390.1 (AT5G45390.1 CLP protease P4)

HSP 1 Score: 123.2 bits (308), Expect = 2.9e-28
Identity = 83/241 (34.44%), Postives = 129/241 (53.53%), Query Frame = 1


Query: 61  SKLASVASTSPETLLSRPGNSDSLPYLDIFDSPQLMAAPAQVERSVSYNEHRSRRPPPDL 120
           S  +S +   P  L  +P    S P      SP L  A A +E S +  E   R    D+
Sbjct: 23  SSASSSSFPKPNNLYLKPTKLISPPLRTTSPSP-LRFANASIEMSQT-QESAIRGAESDV 82

Query: 121 PSLLLHGRIVYIGMPLVPAVTELVIAQLMYLQWMDPKEPIYIYINSSGTTRDDGETVAME 180
             LLL  RIV++G  +   V + +++QL+ L   DPK+ I ++INS G +          
Sbjct: 83  MGLLLRERIVFLGSSIDDFVADAIMSQLLLLDAKDPKKDIKLFINSPGGSL--------- 142

Query: 181 TEGFAIYDAMMQLKNEIHTLTVGAAIGQACLLLAAGTKGKRFMMPHSKAMIQQPRVPSSG 240
           +   AIYD +  ++ ++ T+ +G A   A ++L AGTKGKRF MP+++ MI QP   +SG
Sbjct: 143 SATMAIYDVVQLVRADVSTIALGIAASTASIILGAGTKGKRFAMPNTRIMIHQPLGGASG 202

Query: 241 LMPASDILIRAKEVITNRDTLVELLAKHTGNSLETVANAMKRPFYMDAIKAKEFGVIDKI 300
              A D+ I+AKEV+ N++ +  ++A  T  S E V   + R  YM  I+A E+G+ID +
Sbjct: 203 --QAIDVEIQAKEVMHNKNNVTSIIAGCTSRSFEQVLKDIDRDRYMSPIEAVEYGLIDGV 250

Query: 301 L 302
           +
Sbjct: 263 I 250

[Close]

BLAST of Cp4.1LG11g09070 vs. NCBI nr
Match: gi|659070248|ref|XP_008454159.1| (PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic [Cucumis melo])

HSP 1 Score: 571.2 bits (1471), Expect = 1.1e-159
Identity = 286/331 (86.40%), Postives = 310/331 (93.66%), Query Frame = 1


Query: 1   MATGMKLPMAVSLQKPMAMAV--PSSSSRLPRGINFRTCCSMNATSKAKIPLPPINPKDP 60
           MA GMKLPMAV+LQKPMAMA+  PSSSS L R INFRT    NATSKAKIP+PPINPKDP
Sbjct: 1   MAIGMKLPMAVTLQKPMAMAMAAPSSSSSLHRAINFRTVSCSNATSKAKIPMPPINPKDP 60

Query: 61  FLSKLASVASTSPETLLSRPGNSDSLPYLDIFDSPQLMAAPAQVERSVSYNEHRSRRPPP 120
           FLSKLASVASTSPETLL+RP NSDS PYLDIFD+P+LMAAPAQVERSVSYNEHR RRPPP
Sbjct: 61  FLSKLASVASTSPETLLNRPENSDSPPYLDIFDAPRLMAAPAQVERSVSYNEHRPRRPPP 120

Query: 121 DLPSLLLHGRIVYIGMPLVPAVTELVIAQLMYLQWMDPKEPIYIYINSSGTTRDDGETVA 180
           DLPSLLLHGRIVYIGMPLVPAVTEL++A+LMYLQWMDPKEPIYIYINS+GTTRDDGET+ 
Sbjct: 121 DLPSLLLHGRIVYIGMPLVPAVTELIVAELMYLQWMDPKEPIYIYINSTGTTRDDGETIG 180

Query: 181 METEGFAIYDAMMQLKNEIHTLTVGAAIGQACLLLAAGTKGKRFMMPHSKAMIQQPRVPS 240
           METEGFAIYDAMMQLKNEIHT+ VGAAIGQACLLLAAG++G+R+MMPH+KAMIQQPRVPS
Sbjct: 181 METEGFAIYDAMMQLKNEIHTVAVGAAIGQACLLLAAGSEGRRYMMPHAKAMIQQPRVPS 240

Query: 241 SGLMPASDILIRAKEVITNRDTLVELLAKHTGNSLETVANAMKRPFYMDAIKAKEFGVID 300
           SGLMPASD+LIRAKEVITNRDTLV+LLAKHTGNS+ETV+N MKRPFYMDA  AKEFGV+D
Sbjct: 241 SGLMPASDVLIRAKEVITNRDTLVKLLAKHTGNSVETVSNVMKRPFYMDATLAKEFGVVD 300

Query: 301 KILWRGQEKIMAEVASPEDWDKGAGIKAVDE 330
           KILWRGQEKIM+ V +PEDWDKGAGIK VDE
Sbjct: 301 KILWRGQEKIMSAVVAPEDWDKGAGIKVVDE 331

[Close]

BLAST of Cp4.1LG11g09070 vs. NCBI nr
Match: gi|449454073|ref|XP_004144780.1| (PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic [Cucumis sativus])

HSP 1 Score: 555.8 bits (1431), Expect = 5.0e-155
Identity = 276/330 (83.64%), Postives = 305/330 (92.42%), Query Frame = 1


Query: 1   MATGMKLPMAVSLQKPMAMAVPSSSSRLPRGINFRTCCSMNATSKAKIPLPPINPKDPFL 60
           MATGMKLPM V+LQKPMAMA PSSS  L R INFRT   +NATS AK+PLPPINPKDPFL
Sbjct: 1   MATGMKLPMTVTLQKPMAMAAPSSSFSLHRAINFRTVSCLNATSNAKVPLPPINPKDPFL 60

Query: 61  SKLASVASTSPETLLSRPGNSDSLPYLDIFDSPQLMAAPAQVERSVSYNEHRSRRPPPDL 120
           SKLASVASTSPETLL+RP NS+S PYLDIFD+P+LMAAPAQVERS+SYNEHRSRRPPPDL
Sbjct: 61  SKLASVASTSPETLLNRPANSESPPYLDIFDAPRLMAAPAQVERSISYNEHRSRRPPPDL 120

Query: 121 PSLLLHGRIVYIGMPLVPAVTELVIAQLMYLQWMDPKEPIYIYINSSGTTRDDGETVAME 180
           PSLLLHGRIVYIGMPLVPAVTELVIAQ+MYLQWMDPKEP+Y+YINS+GTTRDDGE VAME
Sbjct: 121 PSLLLHGRIVYIGMPLVPAVTELVIAQIMYLQWMDPKEPMYLYINSTGTTRDDGEVVAME 180

Query: 181 TEGFAIYDAMMQLKNEIHTLTVGAAIGQACLLLAAGTKGKRFMMPHSKAMIQQPRVPSSG 240
           +EGFAIYDA+MQ KNEIHT+ VGAA+G ACLLLAAGTKG+R+ MPH+KAMIQQP VPS G
Sbjct: 181 SEGFAIYDALMQSKNEIHTVNVGAAVGHACLLLAAGTKGRRYSMPHAKAMIQQPSVPSYG 240

Query: 241 LMPASDILIRAKEVITNRDTLVELLAKHTGNSLETVANAMK-RPFYMDAIKAKEFGVIDK 300
           LMPASD++IRAKEV+TNRDTLV+LLAKHT NS+ETVAN MK  P+YMD++KAKEFGVIDK
Sbjct: 241 LMPASDVIIRAKEVLTNRDTLVKLLAKHTENSVETVANVMKGGPYYMDSVKAKEFGVIDK 300

Query: 301 ILWRGQEKIMAEVASPEDWDKGAGIKAVDE 330
           ILWRGQEKIMA++ASPEDWDKGAGIK  DE
Sbjct: 301 ILWRGQEKIMADMASPEDWDKGAGIKVQDE 330

[Close]

BLAST of Cp4.1LG11g09070 vs. NCBI nr
Match: gi|1009116892|ref|XP_015875022.1| (PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic isoform X1 [Ziziphus jujuba])

HSP 1 Score: 532.7 bits (1371), Expect = 4.5e-148
Identity = 266/324 (82.10%), Postives = 296/324 (91.36%), Query Frame = 1


Query: 9   MAVSLQKPMAMAVPSSSS----RLPRGINFRTCCSMNATSKAKIPLPPINPKDPFLSKLA 68
           MA+SLQ P++ ++PSSSS    RL R  NFRT C+MNA +KAKIP+PP NPKDPFLSKLA
Sbjct: 1   MAMSLQMPISTSLPSSSSSPCVRL-RSRNFRTLCTMNAKAKAKIPIPPTNPKDPFLSKLA 60

Query: 69  SVASTSPETLLSRPGNSDSLPYLDIFDSPQLMAAPAQVERSVSYNEHRSRRPPPDLPSLL 128
           SVA+TSPETLL+RP NSD+ PYLD+FD+P+LMA PAQVERSVSYNEHR RRPPPDLPSLL
Sbjct: 61  SVAATSPETLLNRPVNSDTPPYLDLFDAPKLMATPAQVERSVSYNEHRPRRPPPDLPSLL 120

Query: 129 LHGRIVYIGMPLVPAVTELVIAQLMYLQWMDPKEPIYIYINSSGTTRDDGETVAMETEGF 188
           LHGRIVYIGMPLVPAV+ELV+A+LMYLQWMDPKEPIYIYINS+GTTRDDGETV METEGF
Sbjct: 121 LHGRIVYIGMPLVPAVSELVVAELMYLQWMDPKEPIYIYINSTGTTRDDGETVGMETEGF 180

Query: 189 AIYDAMMQLKNEIHTLTVGAAIGQACLLLAAGTKGKRFMMPHSKAMIQQPRVPSSGLMPA 248
           AIYDAMMQL NEIHT+ VGAAIGQACLLLAAG++GKRFMMPH+KAMIQQPR+PSSGLMPA
Sbjct: 181 AIYDAMMQLDNEIHTVAVGAAIGQACLLLAAGSEGKRFMMPHAKAMIQQPRIPSSGLMPA 240

Query: 249 SDILIRAKEVITNRDTLVELLAKHTGNSLETVANAMKRPFYMDAIKAKEFGVIDKILWRG 308
           SD+LIRAKE ITNRDTL+ LLA+HTGNS ETV   MKRP+YMD+ +AKEFGVIDKILWRG
Sbjct: 241 SDVLIRAKEAITNRDTLIRLLAEHTGNSEETVNKVMKRPYYMDSTRAKEFGVIDKILWRG 300

Query: 309 QEKIMAEVASPEDWDKGAGIKAVD 329
           QEKIMA+VA PEDWDKGAGIK VD
Sbjct: 301 QEKIMADVAPPEDWDKGAGIKVVD 323

[Close]

BLAST of Cp4.1LG11g09070 vs. NCBI nr
Match: gi|703134519|ref|XP_010105658.1| (ATP-dependent Clp protease proteolytic subunit-related protein 3 [Morus notabilis])

HSP 1 Score: 530.4 bits (1365), Expect = 2.2e-147
Identity = 268/331 (80.97%), Postives = 293/331 (88.52%), Query Frame = 1


Query: 9   MAVSLQKPMAMAVPSSSS---------RLPRGINFRTCCSMNATSKAKIPLPPINPKDPF 68
           M + LQ P+  ++PSSSS         R PR  NFRT CS NA +KAKIP+PPINPKDPF
Sbjct: 1   MVMGLQLPITNSLPSSSSSSSPFFLGPRNPR--NFRTFCSFNAKAKAKIPVPPINPKDPF 60

Query: 69  LSKLASVASTSPETLLSRPGNSDSLPYLDIFDSPQLMAAPAQVERSVSYNEHRSRRPPPD 128
           LSKLASVA+TSPETLL RP NS+S PYLD+FD+P+LMA PAQVERSVSYN+ R   PPPD
Sbjct: 61  LSKLASVAATSPETLLDRPVNSESPPYLDLFDAPKLMATPAQVERSVSYNDQRPSTPPPD 120

Query: 129 LPSLLLHGRIVYIGMPLVPAVTELVIAQLMYLQWMDPKEPIYIYINSSGTTRDDGETVAM 188
           LPSLLLHGRIVYIGMPLVPAVTELV+A+LMYLQWMDPKEPIYIYINS+GTTRDDGETV M
Sbjct: 121 LPSLLLHGRIVYIGMPLVPAVTELVVAELMYLQWMDPKEPIYIYINSTGTTRDDGETVGM 180

Query: 189 ETEGFAIYDAMMQLKNEIHTLTVGAAIGQACLLLAAGTKGKRFMMPHSKAMIQQPRVPSS 248
           ETEGFAIYDAMMQLKNEIHT+ VGAAIGQACLLL AGTKGKRFMMPH+KAMIQQPRVPSS
Sbjct: 181 ETEGFAIYDAMMQLKNEIHTVAVGAAIGQACLLLLAGTKGKRFMMPHAKAMIQQPRVPSS 240

Query: 249 GLMPASDILIRAKEVITNRDTLVELLAKHTGNSLETVANAMKRPFYMDAIKAKEFGVIDK 308
           GLMPASD+LIRAKE++TNRDTLV+LLAKHTGNS ETVAN M+RPFYMDA KAKEFGVIDK
Sbjct: 241 GLMPASDVLIRAKEIVTNRDTLVKLLAKHTGNSEETVANVMRRPFYMDATKAKEFGVIDK 300

Query: 309 ILWRGQEKIMAEVASPEDWDKGAGIKAVDEL 331
           +LWRGQEKIM++VA PEDWDK AGIK VD L
Sbjct: 301 VLWRGQEKIMSDVAPPEDWDKSAGIKVVDGL 329

[Close]

BLAST of Cp4.1LG11g09070 vs. NCBI nr
Match: gi|225450774|ref|XP_002279451.1| (PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic [Vitis vinifera])

HSP 1 Score: 529.3 bits (1362), Expect = 5.0e-147
Identity = 264/320 (82.50%), Postives = 287/320 (89.69%), Query Frame = 1


Query: 9   MAVSLQKPMAMAVPSSSSRLPRGINFRTCCSMNATSKAKIPLPPINPKDPFLSKLASVAS 68
           MA SLQ PMA ++PSSSS       F+T CSM  T  AKIP+ PINPKDPFLSKLASVA+
Sbjct: 1   MAASLQLPMASSIPSSSSPSTTRPIFKTHCSMKPTCSAKIPMSPINPKDPFLSKLASVAA 60

Query: 69  TSPETLLSRPGNSDSLPYLDIFDSPQLMAAPAQVERSVSYNEHRSRRPPPDLPSLLLHGR 128
           TSPE LL RP  SDSLP+LD+FDSP+LMA PAQVERSVSYNEHR RRPPPDLPSLLLHGR
Sbjct: 61  TSPERLLQRPSGSDSLPFLDLFDSPKLMATPAQVERSVSYNEHRPRRPPPDLPSLLLHGR 120

Query: 129 IVYIGMPLVPAVTELVIAQLMYLQWMDPKEPIYIYINSSGTTRDDGETVAMETEGFAIYD 188
           IVYIGMPLVPAVTELVIA+LMYLQWMDPKEP+Y+YIN +GTTRDDGE V METEGFAIYD
Sbjct: 121 IVYIGMPLVPAVTELVIAELMYLQWMDPKEPVYVYINCTGTTRDDGERVGMETEGFAIYD 180

Query: 189 AMMQLKNEIHTLTVGAAIGQACLLLAAGTKGKRFMMPHSKAMIQQPRVPSSGLMPASDIL 248
           AMMQLKNEIHT+ VGAAIGQACLLLAAGTKGKRFMMPH+KAMIQQPRVPSSGLMPASD+L
Sbjct: 181 AMMQLKNEIHTVAVGAAIGQACLLLAAGTKGKRFMMPHAKAMIQQPRVPSSGLMPASDVL 240

Query: 249 IRAKEVITNRDTLVELLAKHTGNSLETVANAMKRPFYMDAIKAKEFGVIDKILWRGQEKI 308
           IRAKEVITNRDTLV+LLAKHTGNS ETV+  M+RP+YMD+ KAKEFGVIDKILWRGQEKI
Sbjct: 241 IRAKEVITNRDTLVKLLAKHTGNSEETVSTVMRRPYYMDSTKAKEFGVIDKILWRGQEKI 300

Query: 309 MAEVASPEDWDKGAGIKAVD 329
           MA+V SPE+WDK AGI+ VD
Sbjct: 301 MADVLSPEEWDKNAGIQVVD 320

The following BLAST results are available for this feature:

BLAST of Cp4.1LG11g09070 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CLPR3_ARATH	4.4e-135	74.77	ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic ...	[more]
CLPR_SYNY3	2.5e-45	46.15	Putative ATP-dependent Clp protease proteolytic subunit-like OS=Synechocystis sp...	[more]
CLPR_SYNE7	2.1e-44	43.52	Putative ATP-dependent Clp protease proteolytic subunit-like OS=Synechococcus el...	[more]
CLPR1_ARATH	6.7e-43	49.47	ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic ...	[more]
CLPR4_ARATH	9.7e-42	48.94	ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic ...	[more]

BLAST of Cp4.1LG11g09070 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LLW4_CUCSA	3.5e-155	83.64	ATP-dependent Clp protease proteolytic subunit OS=Cucumis sativus GN=Csa_2G03115...	[more]
W9RRY1_9ROSA	1.6e-147	80.97	ATP-dependent Clp protease proteolytic subunit OS=Morus notabilis GN=L484_010822...	[more]
D7U9V6_VITVI	3.5e-147	82.50	ATP-dependent Clp protease proteolytic subunit OS=Vitis vinifera GN=VIT_14s0060g...	[more]
A0A164VKK8_DAUCA	6.5e-146	78.96	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_022148 PE=4 SV=1	[more]
M5WBU1_PRUPE	8.0e-144	77.95	ATP-dependent Clp protease proteolytic subunit OS=Prunus persica GN=PRUPE_ppa008...	[more]

BLAST of Cp4.1LG11g09070 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G09130.3	7.2e-136	74.70	ATP-dependent caseinolytic (Clp) protease/crotonase family protein	[more]
AT1G49970.1	3.8e-44	49.47	CLP protease proteolytic subunit 1	[more]
AT4G17040.1	5.4e-43	48.94	CLP protease R subunit 4	[more]
AT5G23140.1	4.8e-31	38.32	nuclear-encoded CLP protease P7	[more]
AT5G45390.1	2.9e-28	34.44	CLP protease P4	[more]

BLAST of Cp4.1LG11g09070 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659070248\|ref\|XP_008454159.1\|	1.1e-159	86.40	PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 3, chl...	[more]
gi\|449454073\|ref\|XP_004144780.1\|	5.0e-155	83.64	PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 3, chl...	[more]
gi\|1009116892\|ref\|XP_015875022.1\|	4.5e-148	82.10	PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 3, chl...	[more]
gi\|703134519\|ref\|XP_010105658.1\|	2.2e-147	80.97	ATP-dependent Clp protease proteolytic subunit-related protein 3 [Morus notabili...	[more]
gi\|225450774\|ref\|XP_002279451.1\|	5.0e-147	82.50	PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 3, chl...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006508	proteolysis

Vocabulary: **Molecular Function**
Term	Definition
GO:0004252	serine-type endopeptidase activity

Vocabulary: **INTERPRO**
Term	Definition
IPR023562	ClpP/TepA
IPR001907	ClpP

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0009579	thylakoid
molecular_function	GO:0004252	serine-type endopeptidase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG11g09070.1	Cp4.1LG11g09070.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001907	ATP-dependent Clp protease proteolytic subunit	PRINTS	PR00127	CLPPROTEASEP	coord: 119..134 score: 3.3E-20coord: 220..239 score: 3.3E-20coord: 279..298 score: 3.3E-20coord: 159..179 score: 3.3E-20coord: 199..216 score: 3.3
IPR023562	Clp protease proteolytic subunit /Translocation-enhancing protein TepA	PANTHER	PTHR10381	ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT	coord: 41..325 score: 1.7E
IPR023562	Clp protease proteolytic subunit /Translocation-enhancing protein TepA	PFAM	PF00574	CLP_protease	coord: 122..301 score: 2.5
None	No IPR available	PANTHER	PTHR10381:SF6	ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT-RELATED PROTEIN 3, CHLOROPLASTIC	coord: 41..325 score: 1.7E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG11g09070	Cucsa.091070	Cucumber (Gy14) v1	cgycpeB0171
Cp4.1LG11g09070	CmaCh05G011250	Cucurbita maxima (Rimu)	cmacpeB767
Cp4.1LG11g09070	CmoCh12G010720	Cucurbita moschata (Rifu)	cmocpeB159
Cp4.1LG11g09070	CmoCh05G011370	Cucurbita moschata (Rifu)	cmocpeB721
Cp4.1LG11g09070	Cla019925	Watermelon (97103) v1	cpewmB114
Cp4.1LG11g09070	Csa2G031150	Cucumber (Chinese Long) v2	cpecuB100
Cp4.1LG11g09070	MELO3C004223	Melon (DHL92) v3.5.1	cpemeB105
Cp4.1LG11g09070	ClCG02G015430	Watermelon (Charleston Gray)	cpewcgB105
Cp4.1LG11g09070	CSPI02G04300	Wild cucumber (PI 183967)	cpecpiB097
Cp4.1LG11g09070	Lsi11G005890	Bottle gourd (USVL1VR-Ls)	cpelsiB071
Cp4.1LG11g09070	MELO3C004223.2	Melon (DHL92) v3.6.1	cpemedB130
Cp4.1LG11g09070	CsaV3_2G006650	Cucumber (Chinese Long) v3	cpecucB0110
Cp4.1LG11g09070	Bhi06G001291	Wax gourd	cpewgoB0122
Cp4.1LG11g09070	CsGy2G004410	Cucumber (Gy14) v2	cgybcpeB166
Cp4.1LG11g09070	Carg26766	Silver-seed gourd	carcpeB1044
Cp4.1LG11g09070	Carg12044	Silver-seed gourd	carcpeB0800

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG11g09070	Cucurbita pepo (Zucchini)	cpecpeB001
Cp4.1LG11g09070	Cucurbita pepo (Zucchini)	cpecpeB139
Cp4.1LG11g09070	Cucumber (Gy14) v1	cgycpeB0168
Cp4.1LG11g09070	Cucurbita maxima (Rimu)	cmacpeB171
Cp4.1LG11g09070	Cucurbita moschata (Rifu)	cmocpeB147
Cp4.1LG11g09070	Wild cucumber (PI 183967)	cpecpiB088
Cp4.1LG11g09070	Wild cucumber (PI 183967)	cpecpiB100
Cp4.1LG11g09070	Cucumber (Chinese Long) v2	cpecuB092
Cp4.1LG11g09070	Bottle gourd (USVL1VR-Ls)	cpelsiB095
Cp4.1LG11g09070	Watermelon (Charleston Gray)	cpewcgB104
Cp4.1LG11g09070	Watermelon (97103) v1	cpewmB104
Cp4.1LG11g09070	Watermelon (97103) v1	cpewmB113
Cp4.1LG11g09070	Melon (DHL92) v3.5.1	cpemeB084
Cp4.1LG11g09070	Melon (DHL92) v3.5.1	cpemeB099
Cp4.1LG11g09070	Cucumber (Gy14) v2	cgybcpeB168
Cp4.1LG11g09070	Cucumber (Gy14) v2	cgybcpeB027
Cp4.1LG11g09070	Cucumber (Gy14) v2	cgybcpeB028
Cp4.1LG11g09070	Melon (DHL92) v3.6.1	cpemedB108
Cp4.1LG11g09070	Melon (DHL92) v3.6.1	cpemedB123
Cp4.1LG11g09070	Silver-seed gourd	carcpeB1005
Cp4.1LG11g09070	Cucumber (Chinese Long) v3	cpecucB0100