Cp4.1LG11g05940 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG11g05940
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
Description4-coumarate:CoA ligase
LocationCp4.1LG11 : 3543440 .. 3543673 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGTCTCTTCTCCGCCTAATTCAGACCCACAAAGCCACTATAGCCCCCTTCGTCCCTCCCATCGTCTTGGACTTCGCCAAAAACCCCGACATCCACCGTTACGACTTGTCGTCCATCAGAATCGTCATGTCGGGTGCTGCCCCCATGGGCAAGGCCCTGGAAGACACTGTCAAGGCCCGACTCCCCAACGCCACGCTTGGACAGGTAATTCTTAATTTTCTTTTATTTTAA

mRNA sequence

ATGTCGTCTCTTCTCCGCCTAATTCAGACCCACAAAGCCACTATAGCCCCCTTCGTCCCTCCCATCGTCTTGGACTTCGCCAAAAACCCCGACATCCACCGTTACGACTTGTCGTCCATCAGAATCGTCATGTCGGGTGCTGCCCCCATGGGCAAGGCCCTGGAAGACACTGTCAAGGCCCGACTCCCCAACGCCACGCTTGGACAGGTAATTCTTAATTTTCTTTTATTTTAA

Coding sequence (CDS)

ATGTCGTCTCTTCTCCGCCTAATTCAGACCCACAAAGCCACTATAGCCCCCTTCGTCCCTCCCATCGTCTTGGACTTCGCCAAAAACCCCGACATCCACCGTTACGACTTGTCGTCCATCAGAATCGTCATGTCGGGTGCTGCCCCCATGGGCAAGGCCCTGGAAGACACTGTCAAGGCCCGACTCCCCAACGCCACGCTTGGACAGGTAATTCTTAATTTTCTTTTATTTTAA

Protein sequence

MSSLLRLIQTHKATIAPFVPPIVLDFAKNPDIHRYDLSSIRIVMSGAAPMGKALEDTVKARLPNATLGQVILNFLLF
Homology
[Close]
BLAST of Cp4.1LG11g05940 vs. Swiss-Prot
Match: 4CL1_SOYBN (4-coumarate--CoA ligase 1 (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 3.2e-20
Identity = 45/69 (65.22%), Postives = 57/69 (82.61%), Query Frame = 1 

Query: 1  MSSLLRLIQTHKATIAPFVPPIVLDFAKNPDIHRYDLSSIRIVMSGAAPMGKALEDTVKA 60
          ++SLL LI  HK TIAP VPPIVL  +K+PD+H+YDLSSIR++ SG AP+GK LEDT++A
Sbjct: 13 INSLLALIHKHKVTIAPVVPPIVLAISKSPDLHKYDLSSIRVLKSGGAPLGKELEDTLRA 72

Query: 61 RLPNATLGQ 70
          + PNA LGQ
Sbjct: 73 KFPNAKLGQ 81

[Close]
BLAST of Cp4.1LG11g05940 vs. Swiss-Prot
Match: 4CL2_SOLTU (4-coumarate--CoA ligase 2 OS=Solanum tuberosum GN=4CL2 PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 2.1e-19
Identity = 45/69 (65.22%), Postives = 53/69 (76.81%), Query Frame = 1 

Query: 1   MSSLLRLIQTHKATIAPFVPPIVLDFAKNPDIHRYDLSSIRIVMSGAAPMGKALEDTVKA 60
           ++  L LI  HK TI PFVPPIVL  AK+P +H YDLSS+R VMSGAAP+GK LED V+A
Sbjct: 266 IAQFLELIPKHKVTIGPFVPPIVLAIAKSPLVHNYDLSSVRTVMSGAAPLGKELEDAVRA 325

Query: 61  RLPNATLGQ 70
           + PNA LGQ
Sbjct: 326 KFPNAKLGQ 334

[Close]
BLAST of Cp4.1LG11g05940 vs. Swiss-Prot
Match: 4CL2_TOBAC (4-coumarate--CoA ligase 2 OS=Nicotiana tabacum GN=4CL2 PE=1 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 4.6e-19
Identity = 46/67 (68.66%), Postives = 53/67 (79.10%), Query Frame = 1 

Query: 3   SLLRLIQTHKATIAPFVPPIVLDFAKNPDIHRYDLSSIRIVMSGAAPMGKALEDTVKARL 62
           S L LIQ +K TI PFVPPIVL  AK+P +  YDLSS+R VMSGAAP+GK LEDTV+A+ 
Sbjct: 265 SFLELIQRYKVTIGPFVPPIVLAIAKSPMVDDYDLSSVRTVMSGAAPLGKELEDTVRAKF 324

Query: 63  PNATLGQ 70
           PNA LGQ
Sbjct: 325 PNAKLGQ 331

[Close]
BLAST of Cp4.1LG11g05940 vs. Swiss-Prot
Match: 4CL1_PETCR (4-coumarate--CoA ligase 1 OS=Petroselinum crispum GN=4CL1 PE=2 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.7e-18
Identity = 44/65 (67.69%), Postives = 52/65 (80.00%), Query Frame = 1 

Query: 5   LRLIQTHKATIAPFVPPIVLDFAKNPDIHRYDLSSIRIVMSGAAPMGKALEDTVKARLPN 64
           L LIQ +K TI PFVPPIVL  AK+P + +YDLSS+R VMSGAAP+GK LED V+A+ PN
Sbjct: 268 LELIQKYKVTIGPFVPPIVLAIAKSPVVDKYDLSSVRTVMSGAAPLGKELEDAVRAKFPN 327

Query: 65  ATLGQ 70
           A LGQ
Sbjct: 328 AKLGQ 332

[Close]
BLAST of Cp4.1LG11g05940 vs. Swiss-Prot
Match: 4CL2_PETCR (4-coumarate--CoA ligase 1 OS=Petroselinum crispum GN=4CL2 PE=2 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.7e-18
Identity = 44/65 (67.69%), Postives = 52/65 (80.00%), Query Frame = 1 

Query: 5   LRLIQTHKATIAPFVPPIVLDFAKNPDIHRYDLSSIRIVMSGAAPMGKALEDTVKARLPN 64
           L LIQ +K TI PFVPPIVL  AK+P + +YDLSS+R VMSGAAP+GK LED V+A+ PN
Sbjct: 268 LELIQKYKVTIGPFVPPIVLAIAKSPVVDKYDLSSVRTVMSGAAPLGKELEDAVRAKFPN 327

Query: 65  ATLGQ 70
           A LGQ
Sbjct: 328 AKLGQ 332

[Close]
BLAST of Cp4.1LG11g05940 vs. TrEMBL
Match: A0A0A0LM95_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G048330 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 6.4e-28
Identity = 65/69 (94.20%), Postives = 67/69 (97.10%), Query Frame = 1 

Query: 1   MSSLLRLIQTHKATIAPFVPPIVLDFAKNPDIHRYDLSSIRIVMSGAAPMGKALEDTVKA 60
           +SSLLRLIQTHKATIAPFVPPIVLDFAKNPDIHRYDLSSIRIVMSGAAPMGK LEDTVKA
Sbjct: 269 VSSLLRLIQTHKATIAPFVPPIVLDFAKNPDIHRYDLSSIRIVMSGAAPMGKDLEDTVKA 328

Query: 61  RLPNATLGQ 70
           +LPNA LGQ
Sbjct: 329 KLPNAILGQ 337

[Close]
BLAST of Cp4.1LG11g05940 vs. TrEMBL
Match: Q9LL50_RUBID (4-coumarate:coA ligase 2 OS=Rubus idaeus PE=2 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 9.9e-21
Identity = 51/69 (73.91%), Postives = 59/69 (85.51%), Query Frame = 1 

Query: 1   MSSLLRLIQTHKATIAPFVPPIVLDFAKNPDIHRYDLSSIRIVMSGAAPMGKALEDTVKA 60
           ++ LL L++  K TIAPFVPPIVL  AK PD+HRYDLSSIR+VMSGAAPMGK LEDTV+A
Sbjct: 265 INKLLELVEKEKVTIAPFVPPIVLSIAKCPDLHRYDLSSIRMVMSGAAPMGKELEDTVRA 324

Query: 61  RLPNATLGQ 70
           +LPNA LGQ
Sbjct: 325 KLPNAKLGQ 333

[Close]
BLAST of Cp4.1LG11g05940 vs. TrEMBL
Match: A0A0N7BCP5_9ROSA (4-coumaroyl CoA ligase OS=Pyrus x bretschneideri GN=4CL11 PE=2 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.2e-20
Identity = 50/69 (72.46%), Postives = 60/69 (86.96%), Query Frame = 1 

Query: 1   MSSLLRLIQTHKATIAPFVPPIVLDFAKNPDIHRYDLSSIRIVMSGAAPMGKALEDTVKA 60
           ++ LL L++ +K TIAPFVPPIVL  AK+PD+ RYDLSSIR+VMSGAAPMGK LEDTV+A
Sbjct: 268 ITKLLELVEKYKVTIAPFVPPIVLSIAKSPDLDRYDLSSIRMVMSGAAPMGKELEDTVRA 327

Query: 61  RLPNATLGQ 70
           +LPNA LGQ
Sbjct: 328 KLPNAKLGQ 336

[Close]
BLAST of Cp4.1LG11g05940 vs. TrEMBL
Match: K9US15_PYRPY (4-coumarate:coenzyme A ligase 2 OS=Pyrus pyrifolia GN=4CL2 PE=2 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.2e-20
Identity = 50/69 (72.46%), Postives = 60/69 (86.96%), Query Frame = 1 

Query: 1   MSSLLRLIQTHKATIAPFVPPIVLDFAKNPDIHRYDLSSIRIVMSGAAPMGKALEDTVKA 60
           ++ LL L++ +K TIAPFVPPIVL  AK+PD+ RYDLSSIR+VMSGAAPMGK LEDTV+A
Sbjct: 268 ITKLLELVEKYKVTIAPFVPPIVLSIAKSPDLDRYDLSSIRMVMSGAAPMGKELEDTVRA 327

Query: 61  RLPNATLGQ 70
           +LPNA LGQ
Sbjct: 328 KLPNAKLGQ 336

[Close]
BLAST of Cp4.1LG11g05940 vs. TrEMBL
Match: A0A068F498_9ROSA (4-coumarate coenzyme A ligase 5 OS=Eriobotrya japonica GN=4CL5 PE=2 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 4.9e-20
Identity = 49/69 (71.01%), Postives = 60/69 (86.96%), Query Frame = 1 

Query: 1   MSSLLRLIQTHKATIAPFVPPIVLDFAKNPDIHRYDLSSIRIVMSGAAPMGKALEDTVKA 60
           ++ LL L++ +K TIAPFVPPIVL  AK+PD+ RYDLSS+R+VMSGAAPMGK LEDTV+A
Sbjct: 268 ITKLLELVEKYKVTIAPFVPPIVLSIAKSPDLDRYDLSSMRMVMSGAAPMGKELEDTVRA 327

Query: 61  RLPNATLGQ 70
           +LPNA LGQ
Sbjct: 328 KLPNAKLGQ 336

[Close]
BLAST of Cp4.1LG11g05940 vs. TAIR10
Match: AT1G65060.1 (AT1G65060.1 4-coumarate:CoA ligase 3)

HSP 1 Score: 88.2 bits (217), Expect = 2.4e-18
Identity = 40/69 (57.97%), Postives = 54/69 (78.26%), Query Frame = 1 

Query: 1   MSSLLRLIQTHKATIAPFVPPIVLDFAKNPDIHRYDLSSIRIVMSGAAPMGKALEDTVKA 60
           + +LL LIQ H+ TIA  VPP+V+  AKNP ++ YDLSS+R V+SGAAP+GK L+D+++ 
Sbjct: 287 IGALLDLIQRHRVTIAALVPPLVIALAKNPTVNSYDLSSVRFVLSGAAPLGKELQDSLRR 346

Query: 61  RLPNATLGQ 70
           RLP A LGQ
Sbjct: 347 RLPQAILGQ 355

[Close]
BLAST of Cp4.1LG11g05940 vs. TAIR10
Match: AT1G51680.1 (AT1G51680.1 4-coumarate:CoA ligase 1)

HSP 1 Score: 87.8 bits (216), Expect = 3.1e-18
Identity = 43/66 (65.15%), Postives = 50/66 (75.76%), Query Frame = 1 

Query: 4   LLRLIQTHKATIAPFVPPIVLDFAKNPDIHRYDLSSIRIVMSGAAPMGKALEDTVKARLP 63
           LL LIQ  K T+AP VPPIVL  AK+ +  +YDLSSIR+V SGAAP+GK LED V A+ P
Sbjct: 287 LLELIQRCKVTVAPMVPPIVLAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFP 346

Query: 64  NATLGQ 70
           NA LGQ
Sbjct: 347 NAKLGQ 352

[Close]
BLAST of Cp4.1LG11g05940 vs. TAIR10
Match: AT3G21240.1 (AT3G21240.1 4-coumarate:CoA ligase 2)

HSP 1 Score: 83.2 bits (204), Expect = 7.8e-17
Identity = 40/66 (60.61%), Postives = 49/66 (74.24%), Query Frame = 1 

Query: 4   LLRLIQTHKATIAPFVPPIVLDFAKNPDIHRYDLSSIRIVMSGAAPMGKALEDTVKARLP 63
           LL  IQ  K T+A  VPPIVL  AK+P+  +YDLSS+R+V SGAAP+GK LED + A+ P
Sbjct: 280 LLEQIQRCKVTVAMVVPPIVLAIAKSPETEKYDLSSVRMVKSGAAPLGKELEDAISAKFP 339

Query: 64  NATLGQ 70
           NA LGQ
Sbjct: 340 NAKLGQ 345

[Close]
BLAST of Cp4.1LG11g05940 vs. TAIR10
Match: AT3G21230.1 (AT3G21230.1 4-coumarate:CoA ligase 5)

HSP 1 Score: 80.1 bits (196), Expect = 6.6e-16
Identity = 35/69 (50.72%), Postives = 50/69 (72.46%), Query Frame = 1 

Query: 1   MSSLLRLIQTHKATIAPFVPPIVLDFAKNPDIHRYDLSSIRIVMSGAAPMGKALEDTVKA 60
           ++ ++ LIQ +K T+ P  PP+VL F K+P+  RYDLSS+RI++SGAA + K LED V+ 
Sbjct: 292 LNLVMELIQRYKVTVVPVAPPVVLAFIKSPETERYDLSSVRIMLSGAATLKKELEDAVRL 351

Query: 61  RLPNATLGQ 70
           + PNA  GQ
Sbjct: 352 KFPNAIFGQ 360

[Close]
BLAST of Cp4.1LG11g05940 vs. TAIR10
Match: AT1G62940.1 (AT1G62940.1 acyl-CoA synthetase 5)

HSP 1 Score: 53.1 bits (126), Expect = 8.6e-08
Identity = 24/62 (38.71%), Postives = 38/62 (61.29%), Query Frame = 1 

Query: 5   LRLIQTHKATIAPFVPPIVLDFAKNPDIHRYDLSSIRI--VMSGAAPMGKALEDTVKARL 64
           L  +  H+ + AP VPPI+L+  KNP +  +DLS +++  VM+ AAP+   L    +A+ 
Sbjct: 265 LNALIAHEVSFAPIVPPIILNLVKNPIVDEFDLSKLKLQSVMTAAAPLAPELLTAFEAKF 324

[Close]
BLAST of Cp4.1LG11g05940 vs. NCBI nr
Match: gi|449462693|ref|XP_004149075.1| (PREDICTED: 4-coumarate--CoA ligase 1-like [Cucumis sativus])

HSP 1 Score: 131.0 bits (328), Expect = 9.2e-28
Identity = 65/69 (94.20%), Postives = 67/69 (97.10%), Query Frame = 1 

Query: 1   MSSLLRLIQTHKATIAPFVPPIVLDFAKNPDIHRYDLSSIRIVMSGAAPMGKALEDTVKA 60
           +SSLLRLIQTHKATIAPFVPPIVLDFAKNPDIHRYDLSSIRIVMSGAAPMGK LEDTVKA
Sbjct: 269 VSSLLRLIQTHKATIAPFVPPIVLDFAKNPDIHRYDLSSIRIVMSGAAPMGKDLEDTVKA 328

Query: 61  RLPNATLGQ 70
           +LPNA LGQ
Sbjct: 329 KLPNAILGQ 337

[Close]
BLAST of Cp4.1LG11g05940 vs. NCBI nr
Match: gi|659069891|ref|XP_008452293.1| (PREDICTED: 4-coumarate--CoA ligase 2-like [Cucumis melo])

HSP 1 Score: 127.5 bits (319), Expect = 1.0e-26
Identity = 64/69 (92.75%), Postives = 65/69 (94.20%), Query Frame = 1 

Query: 1   MSSLLRLIQTHKATIAPFVPPIVLDFAKNPDIHRYDLSSIRIVMSGAAPMGKALEDTVKA 60
           MSSLLRLIQ HKATIAPFVPPIVLDFAKNPDIH Y+LSSIRIVMSGAAPMGK LEDTVKA
Sbjct: 268 MSSLLRLIQIHKATIAPFVPPIVLDFAKNPDIHNYNLSSIRIVMSGAAPMGKDLEDTVKA 327

Query: 61  RLPNATLGQ 70
           RLPNA LGQ
Sbjct: 328 RLPNAILGQ 336

[Close]
BLAST of Cp4.1LG11g05940 vs. NCBI nr
Match: gi|470148826|ref|XP_004309949.1| (PREDICTED: 4-coumarate--CoA ligase 2-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 107.5 bits (267), Expect = 1.1e-20
Identity = 50/69 (72.46%), Postives = 61/69 (88.41%), Query Frame = 1 

Query: 1   MSSLLRLIQTHKATIAPFVPPIVLDFAKNPDIHRYDLSSIRIVMSGAAPMGKALEDTVKA 60
           ++ LL L++  K TIAPFVPPIVL+ AK+PD+H+YDLSSIR+VMSGAAPMGK LEDTV+A
Sbjct: 266 INKLLELVEKEKVTIAPFVPPIVLNIAKSPDLHQYDLSSIRMVMSGAAPMGKELEDTVRA 325

Query: 61  RLPNATLGQ 70
           +LPNA LGQ
Sbjct: 326 KLPNAKLGQ 334

[Close]
BLAST of Cp4.1LG11g05940 vs. NCBI nr
Match: gi|9651915|gb|AAF91309.1|AF239686_1 (4-coumarate:coA ligase 2 [Rubus idaeus])

HSP 1 Score: 107.1 bits (266), Expect = 1.4e-20
Identity = 51/69 (73.91%), Postives = 59/69 (85.51%), Query Frame = 1 

Query: 1   MSSLLRLIQTHKATIAPFVPPIVLDFAKNPDIHRYDLSSIRIVMSGAAPMGKALEDTVKA 60
           ++ LL L++  K TIAPFVPPIVL  AK PD+HRYDLSSIR+VMSGAAPMGK LEDTV+A
Sbjct: 265 INKLLELVEKEKVTIAPFVPPIVLSIAKCPDLHRYDLSSIRMVMSGAAPMGKELEDTVRA 324

Query: 61  RLPNATLGQ 70
           +LPNA LGQ
Sbjct: 325 KLPNAKLGQ 333

[Close]
BLAST of Cp4.1LG11g05940 vs. NCBI nr
Match: gi|806984570|gb|AKC34063.1| (4-coumaroyl CoA ligase [Pyrus x bretschneideri])

HSP 1 Score: 105.9 bits (263), Expect = 3.2e-20
Identity = 50/69 (72.46%), Postives = 60/69 (86.96%), Query Frame = 1 

Query: 1   MSSLLRLIQTHKATIAPFVPPIVLDFAKNPDIHRYDLSSIRIVMSGAAPMGKALEDTVKA 60
           ++ LL L++ +K TIAPFVPPIVL  AK+PD+ RYDLSSIR+VMSGAAPMGK LEDTV+A
Sbjct: 268 ITKLLELVEKYKVTIAPFVPPIVLSIAKSPDLDRYDLSSIRMVMSGAAPMGKELEDTVRA 327

Query: 61  RLPNATLGQ 70
           +LPNA LGQ
Sbjct: 328 KLPNAKLGQ 336

The following BLAST results are available for this feature:
BLAST of Cp4.1LG11g05940 vs. Swiss-Prot
Match NameE-valueIdentityDescription
4CL1_SOYBN3.2e-2065.224-coumarate--CoA ligase 1 (Fragment) OS=Glycine max PE=2 SV=1[more]
4CL2_SOLTU2.1e-1965.224-coumarate--CoA ligase 2 OS=Solanum tuberosum GN=4CL2 PE=3 SV=1[more]
4CL2_TOBAC4.6e-1968.664-coumarate--CoA ligase 2 OS=Nicotiana tabacum GN=4CL2 PE=1 SV=1[more]
4CL1_PETCR1.7e-1867.694-coumarate--CoA ligase 1 OS=Petroselinum crispum GN=4CL1 PE=2 SV=1[more]
4CL2_PETCR1.7e-1867.694-coumarate--CoA ligase 1 OS=Petroselinum crispum GN=4CL2 PE=2 SV=1[more]
BLAST of Cp4.1LG11g05940 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LM95_CUCSA6.4e-2894.20Uncharacterized protein OS=Cucumis sativus GN=Csa_2G048330 PE=4 SV=1[more]
Q9LL50_RUBID9.9e-2173.914-coumarate:coA ligase 2 OS=Rubus idaeus PE=2 SV=1[more]
A0A0N7BCP5_9ROSA2.2e-2072.464-coumaroyl CoA ligase OS=Pyrus x bretschneideri GN=4CL11 PE=2 SV=1[more]
K9US15_PYRPY2.2e-2072.464-coumarate:coenzyme A ligase 2 OS=Pyrus pyrifolia GN=4CL2 PE=2 SV=1[more]
A0A068F498_9ROSA4.9e-2071.014-coumarate coenzyme A ligase 5 OS=Eriobotrya japonica GN=4CL5 PE=2 SV=1[more]
BLAST of Cp4.1LG11g05940 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G65060.12.4e-1857.97 4-coumarate:CoA ligase 3[more]
AT1G51680.13.1e-1865.15 4-coumarate:CoA ligase 1[more]
AT3G21240.17.8e-1760.61 4-coumarate:CoA ligase 2[more]
AT3G21230.16.6e-1650.72 4-coumarate:CoA ligase 5[more]
AT1G62940.18.6e-0838.71 acyl-CoA synthetase 5[more]
BLAST of Cp4.1LG11g05940 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449462693|ref|XP_004149075.1|9.2e-2894.20PREDICTED: 4-coumarate--CoA ligase 1-like [Cucumis sativus][more]
gi|659069891|ref|XP_008452293.1|1.0e-2692.75PREDICTED: 4-coumarate--CoA ligase 2-like [Cucumis melo][more]
gi|470148826|ref|XP_004309949.1|1.1e-2072.46PREDICTED: 4-coumarate--CoA ligase 2-like [Fragaria vesca subsp. vesca][more]
gi|9651915|gb|AAF91309.1|AF239686_11.4e-2073.914-coumarate:coA ligase 2 [Rubus idaeus][more]
gi|806984570|gb|AKC34063.1|3.2e-2072.464-coumaroyl CoA ligase [Pyrus x bretschneideri][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR000873AMP-dep_Synth/Lig
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009805 coumarin biosynthetic process
biological_process GO:0009809 lignin biosynthetic process
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0009811 stilbene biosynthetic process
biological_process GO:0008152 metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0016207 4-coumarate-CoA ligase activity
molecular_function GO:0047077 Photinus-luciferin 4-monooxygenase (ATP-hydrolyzing) activity
molecular_function GO:0003824 catalytic activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG11g05940.1Cp4.1LG11g05940.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000873AMP-dependent synthetase/ligasePFAMPF00501AMP-bindingcoord: 3..66
score: 3.
NoneNo IPR availableGENE3DG3DSA:3.40.50.980coord: 3..69
score: 2.2
NoneNo IPR availablePANTHERPTHR24096FAMILY NOT NAMEDcoord: 1..69
score: 7.1
NoneNo IPR availablePANTHERPTHR24096:SF1494-COUMARATE--COA LIGASE 1-RELATEDcoord: 1..69
score: 7.1
NoneNo IPR availableunknownSSF56801Acetyl-CoA synthetase-likecoord: 2..67
score: 4.71

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG11g05940MELO3C004092.2Melon (DHL92) v3.6.1cpemedB129
Cp4.1LG11g05940CsaV3_2G007940Cucumber (Chinese Long) v3cpecucB0108
Cp4.1LG11g05940Bhi06G001173Wax gourdcpewgoB0126
Cp4.1LG11g05940CsGy2G005740Cucumber (Gy14) v2cgybcpeB164
Cp4.1LG11g05940Carg08355Silver-seed gourdcarcpeB0079
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG11g05940Cucurbita pepo (Zucchini)cpecpeB129
Cp4.1LG11g05940Cucurbita pepo (Zucchini)cpecpeB144
Cp4.1LG11g05940Cucumber (Gy14) v1cgycpeB0170
Cp4.1LG11g05940Cucurbita maxima (Rimu)cmacpeB110
Cp4.1LG11g05940Cucurbita maxima (Rimu)cmacpeB177
Cp4.1LG11g05940Cucurbita maxima (Rimu)cmacpeB766
Cp4.1LG11g05940Cucurbita moschata (Rifu)cmocpeB086
Cp4.1LG11g05940Cucurbita moschata (Rifu)cmocpeB152
Cp4.1LG11g05940Cucurbita moschata (Rifu)cmocpeB720
Cp4.1LG11g05940Wild cucumber (PI 183967)cpecpiB095
Cp4.1LG11g05940Cucumber (Chinese Long) v2cpecuB098
Cp4.1LG11g05940Bottle gourd (USVL1VR-Ls)cpelsiB070
Cp4.1LG11g05940Watermelon (Charleston Gray)cpewcgB099
Cp4.1LG11g05940Watermelon (Charleston Gray)cpewcgB116
Cp4.1LG11g05940Watermelon (97103) v1cpewmB123
Cp4.1LG11g05940Melon (DHL92) v3.5.1cpemeB103
Cp4.1LG11g05940Cucumber (Gy14) v2cgybcpeB030