Cp4.1LG11g03340 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG11g03340
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionFlotillin-like protein 1
LocationCp4.1LG11 : 1697482 .. 1697931 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTACTTGTTTTGGTGTATCAATTCAAAAAATGTGTCAATTCCAAAGCAATTTATAAGCTTTTTTTTATTTTGGGTGGTTTCCAATTTCTTTGGAGTAAATAATGTTATCTATTTTGGGTGTTTTCCAATTTCTTTGGAGTAAACAATGTTGTCTTTTTTCTTGTTTTGTTTTGTGGATTTTCAGTGTACTTTTGGTTGTTTCTGTATTTTTAATGTTAGCTTTTGAACCATTTTTTAAAAATTATGAATTATCAACCACAACCAAGATTGGAACCTAACTGGAATCACCTTCGATCTCACTCTGATCAACTACACCTTTGAAGTTGAAGCCATGAGAGCCGAGAAGCACCCCGCCGTCTTCACCATTGGCCCCCGCTCCAAATACATGGATAGCCTCCTCAAGAATTCCAAGTTCTCTATTGAGGACGAGACCCGAGCGATTTAG

mRNA sequence

ATGGATTGGAACCTAACTGGAATCACCTTCGATCTCACTCTGATCAACTACACCTTTGAAGTTGAAGCCATGAGAGCCGAGAAGCACCCCGCCGTCTTCACCATTGGCCCCCGCTCCAAATACATGGATAGCCTCCTCAAGAATTCCAAGTTCTCTATTGAGGACGAGACCCGAGCGATTTAG

Coding sequence (CDS)

ATGGATTGGAACCTAACTGGAATCACCTTCGATCTCACTCTGATCAACTACACCTTTGAAGTTGAAGCCATGAGAGCCGAGAAGCACCCCGCCGTCTTCACCATTGGCCCCCGCTCCAAATACATGGATAGCCTCCTCAAGAATTCCAAGTTCTCTATTGAGGACGAGACCCGAGCGATTTAG

Protein sequence

MDWNLTGITFDLTLINYTFEVEAMRAEKHPAVFTIGPRSKYMDSLLKNSKFSIEDETRAI
BLAST of Cp4.1LG11g03340 vs. Swiss-Prot
Match: FLOT3_MEDTR (Flotillin-like protein 3 OS=Medicago truncatula GN=FLOT3 PE=2 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 2.6e-06
Identity = 28/45 (62.22%), Postives = 33/45 (73.33%), Query Frame = 1

Query: 10 FDLTLINYTFEVEAMRAEK----HPAVFTIGPRSKYMDSLLKNSK 51
          FDL+ +NYTFEV+AM AEK     PAVFTIGPR    +SLLK +K
Sbjct: 38 FDLSPVNYTFEVQAMSAEKLPFVLPAVFTIGPRVDDQESLLKYAK 82

BLAST of Cp4.1LG11g03340 vs. Swiss-Prot
Match: FLOT4_MEDTR (Flotillin-like protein 4 OS=Medicago truncatula GN=FLOT4 PE=2 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 2.6e-06
Identity = 31/55 (56.36%), Postives = 37/55 (67.27%), Query Frame = 1

Query: 3  WNLTGIT---FDLTLINYTFEVEAMRAEK----HPAVFTIGPRSKYMDSLLKNSK 51
          W L G +   FDL+ +NYTFEV+AM AEK     PAVFTIGPR    +SLLK +K
Sbjct: 28 WILPGQSYSVFDLSPVNYTFEVQAMSAEKLPFVLPAVFTIGPRVDDKESLLKYAK 82

BLAST of Cp4.1LG11g03340 vs. Swiss-Prot
Match: FLOT1_MEDTR (Flotillin-like protein 1 OS=Medicago truncatula GN=FLOT1 PE=2 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 3.5e-06
Identity = 28/45 (62.22%), Postives = 33/45 (73.33%), Query Frame = 1

Query: 10 FDLTLINYTFEVEAMRAEK----HPAVFTIGPRSKYMDSLLKNSK 51
          FDL+ +NYTFEV+AM AEK     PAVFTIGPR    +SLLK +K
Sbjct: 38 FDLSPVNYTFEVQAMSAEKLPFVLPAVFTIGPRVDDYESLLKYAK 82

BLAST of Cp4.1LG11g03340 vs. TrEMBL
Match: A0A0A0LM23_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G382440 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 7.0e-06
Identity = 33/55 (60.00%), Postives = 39/55 (70.91%), Query Frame = 1

Query: 3  WNLTGIT---FDLTLINYTFEVEAMRAEKH----PAVFTIGPRSKYMDSLLKNSK 51
          W L G +   FD++ +NYTFEV+AM AEK     PAVFTIGPRS  MDSLLK +K
Sbjct: 28 WVLPGQSCTIFDISPVNYTFEVQAMSAEKLPFILPAVFTIGPRSDDMDSLLKYAK 82

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
FLOT3_MEDTR2.6e-0662.22Flotillin-like protein 3 OS=Medicago truncatula GN=FLOT3 PE=2 SV=1[more]
FLOT4_MEDTR2.6e-0656.36Flotillin-like protein 4 OS=Medicago truncatula GN=FLOT4 PE=2 SV=1[more]
FLOT1_MEDTR3.5e-0662.22Flotillin-like protein 1 OS=Medicago truncatula GN=FLOT1 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0LM23_CUCSA7.0e-0660.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G382440 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0051819 induction of tumor, nodule, or growth in other organism involved in symbiotic interaction
cellular_component GO:0005575 cellular_component
cellular_component GO:0016324 apical plasma membrane
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG11g03340.1Cp4.1LG11g03340.1mRNA


The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG11g03340CmaCh05G003680Cucurbita maxima (Rimu)cmacpeB766
Cp4.1LG11g03340CsaV3_2G032250Cucumber (Chinese Long) v3cpecucB0116
Cp4.1LG11g03340Bhi04G000013Wax gourdcpewgoB0142
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG11g03340Wax gourdcpewgoB0163
Cp4.1LG11g03340Cucurbita pepo (Zucchini)cpecpeB134
Cp4.1LG11g03340Cucurbita pepo (Zucchini)cpecpeB146
Cp4.1LG11g03340Cucumber (Gy14) v1cgycpeB0430
Cp4.1LG11g03340Cucumber (Gy14) v1cgycpeB0706
Cp4.1LG11g03340Cucurbita maxima (Rimu)cmacpeB028
Cp4.1LG11g03340Cucurbita maxima (Rimu)cmacpeB179
Cp4.1LG11g03340Cucurbita moschata (Rifu)cmocpeB004
Cp4.1LG11g03340Cucurbita moschata (Rifu)cmocpeB154
Cp4.1LG11g03340Cucurbita moschata (Rifu)cmocpeB720
Cp4.1LG11g03340Wild cucumber (PI 183967)cpecpiB101
Cp4.1LG11g03340Wild cucumber (PI 183967)cpecpiB111
Cp4.1LG11g03340Cucumber (Chinese Long) v2cpecuB105
Cp4.1LG11g03340Cucumber (Chinese Long) v2cpecuB115
Cp4.1LG11g03340Bottle gourd (USVL1VR-Ls)cpelsiB087
Cp4.1LG11g03340Bottle gourd (USVL1VR-Ls)cpelsiB083
Cp4.1LG11g03340Bottle gourd (USVL1VR-Ls)cpelsiB100
Cp4.1LG11g03340Watermelon (Charleston Gray)cpewcgB110
Cp4.1LG11g03340Watermelon (Charleston Gray)cpewcgB125
Cp4.1LG11g03340Watermelon (97103) v1cpewmB101
Cp4.1LG11g03340Watermelon (97103) v1cpewmB106
Cp4.1LG11g03340Melon (DHL92) v3.5.1cpemeB089
Cp4.1LG11g03340Melon (DHL92) v3.5.1cpemeB108
Cp4.1LG11g03340Cucumber (Gy14) v2cgybcpeB169
Cp4.1LG11g03340Cucumber (Gy14) v2cgybcpeB477
Cp4.1LG11g03340Melon (DHL92) v3.6.1cpemedB112
Cp4.1LG11g03340Melon (DHL92) v3.6.1cpemedB133
Cp4.1LG11g03340Silver-seed gourdcarcpeB0199
Cp4.1LG11g03340Silver-seed gourdcarcpeB0895
Cp4.1LG11g03340Silver-seed gourdcarcpeB1352
Cp4.1LG11g03340Cucumber (Chinese Long) v3cpecucB0126