CmaCh05G003680 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh05G003680
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	SPFH/band 7/PHB domain membrane-associated family protein
Location	Cma_Chr05 : 1639943 .. 1640431 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTACTTGTTTTGGTGTATCAATTCAAAAAATGTGTCGATTCCAAAGAATAAATGGGTGTAAGCAATTAATAAGCTTTTTTTTATTTTGGGTGGTTTTCAATTTCTTTGGAGTAAATAATGTTATCTATTTTGGGTGTTTTCCAATTTCTTTGGAGTAAACAATGTTGTCTTTTTTCTTGTTTTGTTTTGTGGATTTTCATTGTACTTTTGGTTGTTTCTGTATTTTTAATGTTAGTTTTTGAACCATTTTTTAAAAATTATGAATTTTCAACCAAAATATTATATTTAACATAAATTGCAACAAGATTGAAACTTAACTAGAATTACCTTCAATCTCACTTTGGTCAACTACACCTTCAAAGTTGAAGCCATGAGAGCCGAGAAGCTCCCCACCATCTTCACCATCGACCCCTGCTCTGAAGACATGGATAGCCTCCTCAAGAATGCCAAGTTCTCTATTGAGGACGAGACCCGAGTGATTTAG

mRNA sequence

ATGGGTTACTTGTTTTGGTGTATCAATTCAAAAAATGTGTCGATTCCAAAGAATAAATGGGTAATTACCTTCAATCTCACTTTGGTCAACTACACCTTCAAAGTTGAAGCCATGAGAGCCGAGAAGCTCCCCACCATCTTCACCATCGACCCCTGCTCTGAAGACATGGATAGCCTCCTCAAGAATGCCAAGTTCTCTATTGAGGACGAGACCCGAGTGATTTAG

Coding sequence (CDS)

ATGGGTTACTTGTTTTGGTGTATCAATTCAAAAAATGTGTCGATTCCAAAGAATAAATGGGTAATTACCTTCAATCTCACTTTGGTCAACTACACCTTCAAAGTTGAAGCCATGAGAGCCGAGAAGCTCCCCACCATCTTCACCATCGACCCCTGCTCTGAAGACATGGATAGCCTCCTCAAGAATGCCAAGTTCTCTATTGAGGACGAGACCCGAGTGATTTAG

Protein sequence

MGYLFWCINSKNVSIPKNKWVITFNLTLVNYTFKVEAMRAEKLPTIFTIDPCSEDMDSLLKNAKFSIEDETRVI

Homology

[Close]

BLAST of CmaCh05G003680 vs. Swiss-Prot
Match: FLOT4_MEDTR (Flotillin-like protein 4 OS=Medicago truncatula GN=FLOT4 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 5.0e-07
Identity = 30/67 (44.78%), Postives = 42/67 (62.69%), Query Frame = 1


Query: 8  INSKNVSIPKNKWVI------TFNLTLVNYTFKVEAMRAEK----LPTIFTIDPCSEDMD 65
          I  K++ + K  W++       F+L+ VNYTF+V+AM AEK    LP +FTI P  +D +
Sbjct: 16 IGIKDIKLAKKAWILPGQSYSVFDLSPVNYTFEVQAMSAEKLPFVLPAVFTIGPRVDDKE 75

[Close]

BLAST of CmaCh05G003680 vs. Swiss-Prot
Match: FLOT3_MEDTR (Flotillin-like protein 3 OS=Medicago truncatula GN=FLOT3 PE=2 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 5.6e-06
Identity = 28/63 (44.44%), Postives = 39/63 (61.90%), Query Frame = 1


Query: 12 NVSIPKNKWVI------TFNLTLVNYTFKVEAMRAEK----LPTIFTIDPCSEDMDSLLK 65
          ++ + K  W+        F+L+ VNYTF+V+AM AEK    LP +FTI P  +D +SLLK
Sbjct: 20 DIKLQKKAWIFPGQSCTVFDLSPVNYTFEVQAMSAEKLPFVLPAVFTIGPRVDDQESLLK 79

[Close]

BLAST of CmaCh05G003680 vs. Swiss-Prot
Match: FLOT1_MEDTR (Flotillin-like protein 1 OS=Medicago truncatula GN=FLOT1 PE=2 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 5.6e-06
Identity = 29/63 (46.03%), Postives = 39/63 (61.90%), Query Frame = 1


Query: 12 NVSIPKNKWVI------TFNLTLVNYTFKVEAMRAEK----LPTIFTIDPCSEDMDSLLK 65
          +V + K  W+        F+L+ VNYTF+V+AM AEK    LP +FTI P  +D +SLLK
Sbjct: 20 DVKLEKKAWIFPGQSCTVFDLSPVNYTFEVQAMSAEKLPFVLPAVFTIGPRVDDYESLLK 79

[Close]

BLAST of CmaCh05G003680 vs. Swiss-Prot
Match: FLOT6_MEDTR (Flotillin-like protein 6 OS=Medicago truncatula GN=FLOT6 PE=2 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 5.6e-06
Identity = 28/64 (43.75%), Postives = 40/64 (62.50%), Query Frame = 1


Query: 11 KNVSIPKNKWVI------TFNLTLVNYTFKVEAMRAEK----LPTIFTIDPCSEDMDSLL 65
          K++ + K  W++        +L+ VNYTF+V+AM AEK    LP +FTI P  +D +SLL
Sbjct: 21 KDIKLAKKAWILPGQSCSVLDLSPVNYTFEVQAMSAEKLPFVLPAVFTIGPRVDDKESLL 80

[Close]

BLAST of CmaCh05G003680 vs. Swiss-Prot
Match: FLOT2_MEDTR (Flotillin-like protein 2 OS=Medicago truncatula GN=FLOT2 PE=2 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 7.3e-06
Identity = 28/64 (43.75%), Postives = 39/64 (60.94%), Query Frame = 1


Query: 11 KNVSIPKNKWVI------TFNLTLVNYTFKVEAMRAEK----LPTIFTIDPCSEDMDSLL 65
          K++ + K  W+         +L+ VNYTF+V+AM AEK    LP +FTI P  +D +SLL
Sbjct: 21 KDIKLKKKAWIFPGQSCTVLDLSPVNYTFEVQAMSAEKLPFVLPAVFTIGPRVDDQESLL 80

[Close]

BLAST of CmaCh05G003680 vs. TrEMBL
Match: A0A0A0LM23_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G382440 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 6.6e-06
Identity = 31/67 (46.27%), Postives = 43/67 (64.18%), Query Frame = 1


Query: 8  INSKNVSIPKNKWVIT------FNLTLVNYTFKVEAMRAEK----LPTIFTIDPCSEDMD 65
          +   ++ + K  WV+       F+++ VNYTF+V+AM AEK    LP +FTI P S+DMD
Sbjct: 16 VGISDIKLAKKAWVLPGQSCTIFDISPVNYTFEVQAMSAEKLPFILPAVFTIGPRSDDMD 75

[Close]

BLAST of CmaCh05G003680 vs. TAIR10
Match: AT5G25250.1 (AT5G25250.1 SPFH/Band 7/PHB domain-containing membrane-associated protein family)

HSP 1 Score: 47.4 bits (111), Expect = 4.5e-06
Identity = 26/64 (40.62%), Postives = 39/64 (60.94%), Query Frame = 1


Query: 11 KNVSIPKNKWVI------TFNLTLVNYTFKVEAMRAEK----LPTIFTIDPCSEDMDSLL 65
          +++ + K  WV        F+++ VNYTFKV+AM AEK    LP +FTI P  +D D+L+
Sbjct: 19 EDIKLSKKSWVFPWQSCTVFDVSPVNYTFKVQAMSAEKLPFVLPAVFTIGPRVDDDDALI 78

[Close]

BLAST of CmaCh05G003680 vs. TAIR10
Match: AT5G25260.1 (AT5G25260.1 SPFH/Band 7/PHB domain-containing membrane-associated protein family)

HSP 1 Score: 46.6 bits (109), Expect = 7.7e-06
Identity = 25/64 (39.06%), Postives = 39/64 (60.94%), Query Frame = 1


Query: 11 KNVSIPKNKWVI------TFNLTLVNYTFKVEAMRAEK----LPTIFTIDPCSEDMDSLL 65
          +++ + K  WV        F+++ VNYTFKV+AM AEK    LP +FTI P  +D ++L+
Sbjct: 19 EDIKLSKKSWVFPWQRCTVFDVSPVNYTFKVQAMSAEKLPFVLPAVFTIGPRVDDTEALI 78

[Close]

BLAST of CmaCh05G003680 vs. NCBI nr
Match: gi|778672592|ref|XP_011649835.1| (PREDICTED: flotillin-like protein 4 [Cucumis sativus])

HSP 1 Score: 57.8 bits (138), Expect = 9.5e-06
Identity = 31/67 (46.27%), Postives = 43/67 (64.18%), Query Frame = 1


Query: 8  INSKNVSIPKNKWVIT------FNLTLVNYTFKVEAMRAEK----LPTIFTIDPCSEDMD 65
          +   ++ + K  WV+       F+++ VNYTF+V+AM AEK    LP +FTI P S+DMD
Sbjct: 16 VGISDIKLAKKAWVLPGQSCTIFDISPVNYTFEVQAMSAEKLPFILPAVFTIGPRSDDMD 75

The following BLAST results are available for this feature:

BLAST of CmaCh05G003680 vs. Swiss-Prot


Match Name	E-value	Identity	Description
FLOT4_MEDTR	5.0e-07	44.78	Flotillin-like protein 4 OS=Medicago truncatula GN=FLOT4 PE=2 SV=1	[more]
FLOT3_MEDTR	5.6e-06	44.44	Flotillin-like protein 3 OS=Medicago truncatula GN=FLOT3 PE=2 SV=1	[more]
FLOT1_MEDTR	5.6e-06	46.03	Flotillin-like protein 1 OS=Medicago truncatula GN=FLOT1 PE=2 SV=1	[more]
FLOT6_MEDTR	5.6e-06	43.75	Flotillin-like protein 6 OS=Medicago truncatula GN=FLOT6 PE=2 SV=1	[more]
FLOT2_MEDTR	7.3e-06	43.75	Flotillin-like protein 2 OS=Medicago truncatula GN=FLOT2 PE=2 SV=1	[more]

BLAST of CmaCh05G003680 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LM23_CUCSA	6.6e-06	46.27	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G382440 PE=4 SV=1	[more]

BLAST of CmaCh05G003680 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G25250.1	4.5e-06	40.63	SPFH/Band 7/PHB domain-containing membrane-associated protein family	[more]
AT5G25260.1	7.7e-06	39.06	SPFH/Band 7/PHB domain-containing membrane-associated protein family	[more]

BLAST of CmaCh05G003680 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778672592\|ref\|XP_011649835.1\|	9.5e-06	46.27	PREDICTED: flotillin-like protein 4 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051819	induction of tumor, nodule, or growth in other organism involved in symbiotic interaction
cellular_component	GO:0016324	apical plasma membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh05G003680.1	CmaCh05G003680.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh05G003680	Cp4.1LG11g03340	Cucurbita pepo (Zucchini)	cmacpeB766
CmaCh05G003680	Bhi04G000013	Wax gourd	cmawgoB0945

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh05G003680	Wax gourd	cmawgoB0967
CmaCh05G003680	Cucurbita maxima (Rimu)	cmacmaB066
CmaCh05G003680	Cucurbita maxima (Rimu)	cmacmaB199
CmaCh05G003680	Cucumber (Gy14) v1	cgycmaB0462
CmaCh05G003680	Cucumber (Gy14) v1	cgycmaB0758
CmaCh05G003680	Cucurbita moschata (Rifu)	cmacmoB754
CmaCh05G003680	Cucurbita moschata (Rifu)	cmacmoB770
CmaCh05G003680	Cucurbita moschata (Rifu)	cmacmoB786
CmaCh05G003680	Wild cucumber (PI 183967)	cmacpiB801
CmaCh05G003680	Wild cucumber (PI 183967)	cmacpiB809
CmaCh05G003680	Cucumber (Chinese Long) v2	cmacuB792
CmaCh05G003680	Cucumber (Chinese Long) v2	cmacuB800
CmaCh05G003680	Melon (DHL92) v3.5.1	cmameB725
CmaCh05G003680	Melon (DHL92) v3.5.1	cmameB743
CmaCh05G003680	Watermelon (Charleston Gray)	cmawcgB700
CmaCh05G003680	Watermelon (Charleston Gray)	cmawcgB712
CmaCh05G003680	Watermelon (97103) v1	cmawmB753
CmaCh05G003680	Watermelon (97103) v1	cmawmB756
CmaCh05G003680	Cucurbita pepo (Zucchini)	cmacpeB785
CmaCh05G003680	Cucurbita pepo (Zucchini)	cmacpeB797
CmaCh05G003680	Bottle gourd (USVL1VR-Ls)	cmalsiB727
CmaCh05G003680	Bottle gourd (USVL1VR-Ls)	cmalsiB739
CmaCh05G003680	Cucumber (Gy14) v2	cgybcmaB258
CmaCh05G003680	Cucumber (Gy14) v2	cgybcmaB557
CmaCh05G003680	Melon (DHL92) v3.6.1	cmamedB818
CmaCh05G003680	Melon (DHL92) v3.6.1	cmamedB838
CmaCh05G003680	Silver-seed gourd	carcmaB0189
CmaCh05G003680	Silver-seed gourd	carcmaB0901
CmaCh05G003680	Silver-seed gourd	carcmaB1357
CmaCh05G003680	Cucumber (Chinese Long) v3	cmacucB0935
CmaCh05G003680	Cucumber (Chinese Long) v3	cmacucB0944
CmaCh05G003680	Watermelon (97103) v2	cmawmbB817
CmaCh05G003680	Watermelon (97103) v2	cmawmbB829
CmaCh05G003680	Watermelon (97103) v2	cmawmbB832