Cp4.1LG11g00070 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG11g00070
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG11 : 464636 .. 466165 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCCGCTGTTGCTTCTCCTCATCCCAAGTCTCCGCCGACCGGAAGGAGATTCCGGTGAAGAATCCAAAACCGGAGAAGAAATCGGCGGCGGAGCGTAAGGGAGCTCCGATTGACGGTTCCTATCATTCTCACTTGTACTGGCGATGAGGATGGCGATTCCATCAATTGTGTTAGTAATTAAATGCTCATTATTTTGTTTCCTTTTACTTATTGATAAGTTAATTTAATTTAATTTAATTAGTTAAATAATATATCATCTGAAAGGAAAAAAAGAAAAAATATCTGTAATGTAAGGTTGATTCCTAGACAGGAAGGAAGTTTCTGGAACGATATTCAAAAACCACACAAATCAACTAGCCAATCACTCTCGCCTGTCATTTCTTAAACCACACAGCGCTGTCTCTCTATATCCTGGGCCCCACATTCCTAACTATATTTGTCCATTATTGACCTTCACAGTTCACAGCCTTCGTTTTTGTGGGCCCCACCCATCATTTTCCTTTTCTTTTCTTTTTTTTATTAACACATTTTCGCTGTTTCAGTGCCTTTCCGTATGTTTCTTCTCATTAATTTCGTCTTTTCGCCTTTTGGCGTAACTTCACGCTCCAATCCTCACCGTCCGATTGTTTTCGTATATACCACGCGCCATCAATTTTGAACCCCCATGCCGAAGAATCTTCCACTTTTGCAACGGACCGGAGAACGTTAAGAATGAAACGACACCGTTGTTTAATTTGAAGAGTGAATTTTTAAATCCTATTATTCATATATTAATTAAATTTTAGGTTAATATTAAACTAAATAACCACTATTTTTAATTACAACTTTAAAATGTTTCAATTTTTTATATATATTTACCAATTTTTAGTATAACTATTTTAAGATGACTTTTAATTCTAATAAAAATAATAAATAATTTGCTCCAATTGTGGAACTTCAAACTGGAATAAACCATAAATAGAATAAATCTCTAAAGTTTAACCCAAAAAGAAAAAAAAAAAAAAAAAATTTAAAACAAAAAATTACTTTTTATTTAAACGTTGTGCGGTGGAAAGACGCATATATTCCCGTTGATGATTTGAGGGAAATAGGGGACCACGCCAAAATATTAGCTGGCATTCAACCAATCGCCAGCTTGCTTGCCCCCTGCCCGTATACCTGCCCGACTTTCTCTCGCTCCTATTTTTCGCTCTCTTTCTCTCTATATATATCTCCTTCCACTATTTTCATTTCTCAATTGCAATTCAAAGCTAAGGGTCTTCTCTCAATCTCTTTCAATCCCTCTCTTCGTCTCCTTCCTCTCGCCGGAACCACCCTAATAAGCAAATATCTGAATCAATGGCCGGCGTTTCCCAAGCTTCTCTCGTGGCTCTCATTGCCATCATCTTCGCCGTCGCCTCAGTCGCTGCTACTGAGGCTCCCGCCCCCAGCCCTGCCTCCCCTGCTACTTCCATTGCTCCGTCATTCGTCTCCGCTTGCGTCGCTGCCTTCGTTGCTCTCGCCTTCGGATCTACTCTCAGGATCTGA

mRNA sequence

ATGTTCCGCTGTTGCTTCTCCTCATCCCAAGTCTCCGCCGACCGGAAGGAGATTCCGGTGAAGAATCCAAAACCGGAGAAGAAATCGGCGGCGGAGCGTAAGGGAGCTCCGATTGACGGGTCTTCTCTCAATCTCTTTCAATCCCTCTCTTCGTCTCCTTCCTCTCGCCGGAACCACCCTAATAAGCAAATATCTGAATCAATGGCCGGCGTTTCCCAAGCTTCTCTCGTGGCTCTCATTGCCATCATCTTCGCCGTCGCCTCAGTCGCTGCTACTGAGGCTCCCGCCCCCAGCCCTGCCTCCCCTGCTACTTCCATTGCTCCGTCATTCGTCTCCGCTTGCGTCGCTGCCTTCGTTGCTCTCGCCTTCGGATCTACTCTCAGGATCTGA

Coding sequence (CDS)

ATGTTCCGCTGTTGCTTCTCCTCATCCCAAGTCTCCGCCGACCGGAAGGAGATTCCGGTGAAGAATCCAAAACCGGAGAAGAAATCGGCGGCGGAGCGTAAGGGAGCTCCGATTGACGGGTCTTCTCTCAATCTCTTTCAATCCCTCTCTTCGTCTCCTTCCTCTCGCCGGAACCACCCTAATAAGCAAATATCTGAATCAATGGCCGGCGTTTCCCAAGCTTCTCTCGTGGCTCTCATTGCCATCATCTTCGCCGTCGCCTCAGTCGCTGCTACTGAGGCTCCCGCCCCCAGCCCTGCCTCCCCTGCTACTTCCATTGCTCCGTCATTCGTCTCCGCTTGCGTCGCTGCCTTCGTTGCTCTCGCCTTCGGATCTACTCTCAGGATCTGA

Protein sequence

MFRCCFSSSQVSADRKEIPVKNPKPEKKSAAERKGAPIDGSSLNLFQSLSSSPSSRRNHPNKQISESMAGVSQASLVALIAIIFAVASVAATEAPAPSPASPATSIAPSFVSACVAAFVALAFGSTLRI
Homology
[Close]
BLAST of Cp4.1LG11g00070 vs. Swiss-Prot
Match: AGP15_ARATH (Arabinogalactan peptide 15 OS=Arabidopsis thaliana GN=AGP15 PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 9.7e-06
Identity = 33/59 (55.93%), Postives = 45/59 (76.27%), Query Frame = 1 

Query: 71  VSQASLVALIAIIFAVASVAATEAPAPSPASPATSIAPSFVSACVAAFVALAFGSTLRI 130
           +S+AS+V L+ +I +V + A +EAPAPSP S +++I+ SFVSA VAA  AL FGS LRI
Sbjct: 3   ISKASIVVLMMVIISVVASAQSEAPAPSPTSGSSAISASFVSAGVAAVAALVFGSALRI 61

[Close]
BLAST of Cp4.1LG11g00070 vs. TrEMBL
Match: A0A0A0LKU1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G351840 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 7.5e-13
Identity = 56/93 (60.22%), Postives = 69/93 (74.19%), Query Frame = 1 

Query: 37  PIDGSSLNLFQSLSSSPSSRRNHPNKQISESMAGVSQASLVALIAIIFAVASVAATEAPA 96
           P    +  +  SL S  S+    P+  +   MA +S+ SL+ALIA+IFA++SVAA EAPA
Sbjct: 37  PFSFPNQTVLSSLLSPASTLTPRPH-YLFYPMAALSKVSLLALIALIFALSSVAAQEAPA 96

Query: 97  PSPASPATSIAPSFVSACVAAFVALAFGSTLRI 130
           PSPASPATSIAPS VSAC+AAF+ALAFGSTLRI
Sbjct: 97  PSPASPATSIAPSAVSACLAAFLALAFGSTLRI 128

[Close]
BLAST of Cp4.1LG11g00070 vs. TrEMBL
Match: Q96504_CUCSA (CRG16 OS=Cucumis sativus GN=Csa_4G645890 PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 5.2e-06
Identity = 37/64 (57.81%), Postives = 47/64 (73.44%), Query Frame = 1 

Query: 68  MAGVSQASLVALIAIIFAVASVA---ATEAPAPSPASPATSIAPSFVSACVAAFVALAFG 127
           MA VS+ S +AL+A++FAV SVA   + E+PAP PASPA S+ PS   ACV AF+AL FG
Sbjct: 1   MAAVSKVSFMALVAVLFAVLSVAVAQSAESPAPPPASPANSVVPSLSFACVGAFLALLFG 60

Query: 128 STLR 129
           S L+
Sbjct: 61  SALK 64

[Close]
BLAST of Cp4.1LG11g00070 vs. TAIR10
Match: AT5G11740.1 (AT5G11740.1 arabinogalactan protein 15)

HSP 1 Score: 51.2 bits (121), Expect = 5.5e-07
Identity = 33/59 (55.93%), Postives = 45/59 (76.27%), Query Frame = 1 

Query: 71  VSQASLVALIAIIFAVASVAATEAPAPSPASPATSIAPSFVSACVAAFVALAFGSTLRI 130
           +S+AS+V L+ +I +V + A +EAPAPSP S +++I+ SFVSA VAA  AL FGS LRI
Sbjct: 3   ISKASIVVLMMVIISVVASAQSEAPAPSPTSGSSAISASFVSAGVAAVAALVFGSALRI 61

[Close]
BLAST of Cp4.1LG11g00070 vs. NCBI nr
Match: gi|700207284|gb|KGN62403.1| (hypothetical protein Csa_2G351840 [Cucumis sativus])

HSP 1 Score: 81.6 bits (200), Expect = 1.1e-12
Identity = 56/93 (60.22%), Postives = 69/93 (74.19%), Query Frame = 1 

Query: 37  PIDGSSLNLFQSLSSSPSSRRNHPNKQISESMAGVSQASLVALIAIIFAVASVAATEAPA 96
           P    +  +  SL S  S+    P+  +   MA +S+ SL+ALIA+IFA++SVAA EAPA
Sbjct: 37  PFSFPNQTVLSSLLSPASTLTPRPH-YLFYPMAALSKVSLLALIALIFALSSVAAQEAPA 96

Query: 97  PSPASPATSIAPSFVSACVAAFVALAFGSTLRI 130
           PSPASPATSIAPS VSAC+AAF+ALAFGSTLRI
Sbjct: 97  PSPASPATSIAPSAVSACLAAFLALAFGSTLRI 128

[Close]
BLAST of Cp4.1LG11g00070 vs. NCBI nr
Match: gi|1669529|dbj|BAA08394.1| (CRG16 [Cucumis sativus])

HSP 1 Score: 58.9 bits (141), Expect = 7.4e-06
Identity = 37/64 (57.81%), Postives = 47/64 (73.44%), Query Frame = 1 

Query: 68  MAGVSQASLVALIAIIFAVASVA---ATEAPAPSPASPATSIAPSFVSACVAAFVALAFG 127
           MA VS+ S +AL+A++FAV SVA   + E+PAP PASPA S+ PS   ACV AF+AL FG
Sbjct: 1   MAAVSKVSFMALVAVLFAVLSVAVAQSAESPAPPPASPANSVVPSLSFACVGAFLALLFG 60

Query: 128 STLR 129
           S L+
Sbjct: 61  SALK 64

The following BLAST results are available for this feature:
BLAST of Cp4.1LG11g00070 vs. Swiss-Prot
Match NameE-valueIdentityDescription
AGP15_ARATH9.7e-0655.93Arabinogalactan peptide 15 OS=Arabidopsis thaliana GN=AGP15 PE=1 SV=1[more]
BLAST of Cp4.1LG11g00070 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LKU1_CUCSA7.5e-1360.22Uncharacterized protein OS=Cucumis sativus GN=Csa_2G351840 PE=4 SV=1[more]
Q96504_CUCSA5.2e-0657.81CRG16 OS=Cucumis sativus GN=Csa_4G645890 PE=2 SV=1[more]
BLAST of Cp4.1LG11g00070 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G11740.15.5e-0755.93 arabinogalactan protein 15[more]
BLAST of Cp4.1LG11g00070 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700207284|gb|KGN62403.1|1.1e-1260.22hypothetical protein Csa_2G351840 [Cucumis sativus][more]
gi|1669529|dbj|BAA08394.1|7.4e-0657.81CRG16 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG11g00070.1Cp4.1LG11g00070.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG11g00070CmaCh05G001070Cucurbita maxima (Rimu)cmacpeB766
Cp4.1LG11g00070CmoCh05G001130Cucurbita moschata (Rifu)cmocpeB720
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG11g00070Wax gourdcpewgoB0141
Cp4.1LG11g00070Wax gourdcpewgoB0157
Cp4.1LG11g00070Cucurbita pepo (Zucchini)cpecpeB125
Cp4.1LG11g00070Cucurbita pepo (Zucchini)cpecpeB136
Cp4.1LG11g00070Cucurbita pepo (Zucchini)cpecpeB146
Cp4.1LG11g00070Cucumber (Gy14) v1cgycpeB0919
Cp4.1LG11g00070Cucumber (Gy14) v1cgycpeB1039
Cp4.1LG11g00070Cucurbita maxima (Rimu)cmacpeB030
Cp4.1LG11g00070Cucurbita maxima (Rimu)cmacpeB179
Cp4.1LG11g00070Cucurbita maxima (Rimu)cmacpeB460
Cp4.1LG11g00070Cucurbita moschata (Rifu)cmocpeB006
Cp4.1LG11g00070Cucurbita moschata (Rifu)cmocpeB154
Cp4.1LG11g00070Wild cucumber (PI 183967)cpecpiB092
Cp4.1LG11g00070Wild cucumber (PI 183967)cpecpiB112
Cp4.1LG11g00070Cucumber (Chinese Long) v2cpecuB096
Cp4.1LG11g00070Cucumber (Chinese Long) v2cpecuB116
Cp4.1LG11g00070Bottle gourd (USVL1VR-Ls)cpelsiB085
Cp4.1LG11g00070Bottle gourd (USVL1VR-Ls)cpelsiB100
Cp4.1LG11g00070Watermelon (Charleston Gray)cpewcgB115
Cp4.1LG11g00070Watermelon (Charleston Gray)cpewcgB125
Cp4.1LG11g00070Watermelon (97103) v1cpewmB101
Cp4.1LG11g00070Watermelon (97103) v1cpewmB110
Cp4.1LG11g00070Melon (DHL92) v3.5.1cpemeB091
Cp4.1LG11g00070Melon (DHL92) v3.5.1cpemeB107
Cp4.1LG11g00070Cucumber (Gy14) v2cgybcpeB161
Cp4.1LG11g00070Cucumber (Gy14) v2cgybcpeB478
Cp4.1LG11g00070Melon (DHL92) v3.6.1cpemedB103
Cp4.1LG11g00070Melon (DHL92) v3.6.1cpemedB115
Cp4.1LG11g00070Melon (DHL92) v3.6.1cpemedB132
Cp4.1LG11g00070Silver-seed gourdcarcpeB0263
Cp4.1LG11g00070Silver-seed gourdcarcpeB0446
Cp4.1LG11g00070Silver-seed gourdcarcpeB0975
Cp4.1LG11g00070Silver-seed gourdcarcpeB1078
Cp4.1LG11g00070Cucumber (Chinese Long) v3cpecucB0106
Cp4.1LG11g00070Cucumber (Chinese Long) v3cpecucB0127
Cp4.1LG11g00070Cucumber (Chinese Long) v3cpecucB0141