CmoCh05G001130 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh05G001130
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr05 : 470702 .. 472204 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCCGCTGTTGCTTCTCCTCATCCCAAGTCTCCGCCGTCGGGAAGGAGATTCCGGTGAAGAATCCAAAACCGGAGAAGAAATCGGCGGTGGAGTGTAAGGGAGCTCCGATCGACGGTTCCTATCATTCTCACTTGTACTGGCGATGAGGATGGCGATTCCATCAATTGTGTTTCCTTTTACTTATTGATTGATAAGTTAATTTAATTAGTTAAATAATATATCATCTGAAAGGGAAAAAAAAAAAAATCAGAAAAAAAATCTGTAATGTAAGGTTGATTCCTAGACAGGAAGGAAGTTTCTGGAACGATATTCAAAAACCACACAAATCAACTAGCCAATCACTCTCGCCTGTCATTTCTTAACCACACAGCTGTCTCTCTATATCCTGGGCCCCACAATTCCTAACTATATTTGTCCATTATTGACCTTCACAGTTCACAGCCTTCGTTTTGTGGGCCCCACCCATCATTTTCCTTTTTTTTTTATTTTTTTTATTAACACATTTTCGCTGTTTCAGTGGCTTTCCGTTTTTTTTTTCCTCATTAATTTCGTCTTTTTCGCCTTTTGGCGTATCTTCACGCTCCAATCCACGCCGTCCGATTGTTTTGTATATACCACGCGCCATCAATTTTGAACCCCCATGCCGAAGAATCTTCCACTTTTGCAACGGACCGGAGAATGTTAGAATGAAACGACACCGTTGTTTAATTTGAAAGAGTGAAATTTTAAATCCTATTATTCGTATATTAATTAAATTTTAGGTTAAGATTAAACTAAATAACCACTATTTTTAATTACAACTTTAAAATGTTTCAATTTTTTTATATATTTACCATTTTTAGTATAACTATTTTAAGATGGCTATTAATTCTAATAAAAATAATAAATAATTTGCTCCAATTGTGGAACTTCAAACTGGAATAAACCATAAATAGAATAAATCTCAAAAGTTTAACCCAAAAAGAAAAAAAAAAAAGAAATTTAAAACAAAAAATTACTTTTTATTTAAACGTTGTGCGGTGGAAAGACGCATATATTCCCGTTGATGATTTGAGGGAAATAGGGGACCACGCCAAAATATTAGCTGGCATTCAACCAATCGCCAGCTTGCTTGCCCCCTGCCCGAATACCTGCCCGACTTTCTCTCGCTCCTATTTTTCGCTCTCTTTCTCTCTATATATATCTCCTTCCACTATTTTCATTTCTCAATTGCAATTCAAAGCTAAGGGTCTTCTCTCAATCTCTTTCGATCCCTCTCGTCGTCTCCTTCCTCTCGCCGGAACCACCCTAACAGGCAAATATCTGAATCAATGGCCGGCGTTTCCCAAGCTTCTCTCGTTGCTCTCATTGCCATCGTCTTCGCCGTCGCCTCCGTTGCTGCTACTGAGGCTCCCGCCCCCAGCCCTGCCTCCCCTGCTACCTCCATTGCTCCGTCGTTCGTCTCCGCTTGCGTCGCTGCCTTCGTTGCTCTCGCCTTCGGATCTACTCTCAGGATCTGA

mRNA sequence

ATGTTCCGCTGTTGCTTCTCCTCATCCCAAGTCTCCGCCGTCGGGAAGGAGATTCCGGTGAAGAATCCAAAACCGGAGAAGAAATCGGCGGTGGAGTGTAAGGGAGCTCCGATCGACGGGTCTTCTCTCAATCTCTTTCGATCCCTCTCGTCGTCTCCTTCCTCTCGCCGGAACCACCCTAACAGGCAAATATCTGAATCAATGGCCGGCGTTTCCCAAGCTTCTCTCGTTGCTCTCATTGCCATCGTCTTCGCCGTCGCCTCCGTTGCTGCTACTGAGGCTCCCGCCCCCAGCCCTGCCTCCCCTGCTACCTCCATTGCTCCGTCGTTCGTCTCCGCTTGCGTCGCTGCCTTCGTTGCTCTCGCCTTCGGATCTACTCTCAGGATCTGA

Coding sequence (CDS)

ATGTTCCGCTGTTGCTTCTCCTCATCCCAAGTCTCCGCCGTCGGGAAGGAGATTCCGGTGAAGAATCCAAAACCGGAGAAGAAATCGGCGGTGGAGTGTAAGGGAGCTCCGATCGACGGGTCTTCTCTCAATCTCTTTCGATCCCTCTCGTCGTCTCCTTCCTCTCGCCGGAACCACCCTAACAGGCAAATATCTGAATCAATGGCCGGCGTTTCCCAAGCTTCTCTCGTTGCTCTCATTGCCATCGTCTTCGCCGTCGCCTCCGTTGCTGCTACTGAGGCTCCCGCCCCCAGCCCTGCCTCCCCTGCTACCTCCATTGCTCCGTCGTTCGTCTCCGCTTGCGTCGCTGCCTTCGTTGCTCTCGCCTTCGGATCTACTCTCAGGATCTGA
Homology
[Close]
BLAST of CmoCh05G001130 vs. TrEMBL
Match: A0A0A0LKU1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G351840 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 5.7e-13
Identity = 52/78 (66.67%), Postives = 63/78 (80.77%), Query Frame = 1 

Query: 52  SPSSRRNHPNRQISESMAGVSQASLVALIAIVFAVASVAATEAPAPSPASPATSIAPSFV 111
           SP+S        +   MA +S+ SL+ALIA++FA++SVAA EAPAPSPASPATSIAPS V
Sbjct: 51  SPASTLTPRPHYLFYPMAALSKVSLLALIALIFALSSVAAQEAPAPSPASPATSIAPSAV 110

Query: 112 SACVAAFVALAFGSTLRI 130
           SAC+AAF+ALAFGSTLRI
Sbjct: 111 SACLAAFLALAFGSTLRI 128

[Close]
BLAST of CmoCh05G001130 vs. TrEMBL
Match: Q96504_CUCSA (CRG16 OS=Cucumis sativus GN=Csa_4G645890 PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 6.8e-06
Identity = 37/64 (57.81%), Postives = 47/64 (73.44%), Query Frame = 1 

Query: 68  MAGVSQASLVALIAIVFAVASVA---ATEAPAPSPASPATSIAPSFVSACVAAFVALAFG 127
           MA VS+ S +AL+A++FAV SVA   + E+PAP PASPA S+ PS   ACV AF+AL FG
Sbjct: 1   MAAVSKVSFMALVAVLFAVLSVAVAQSAESPAPPPASPANSVVPSLSFACVGAFLALLFG 60

Query: 128 STLR 129
           S L+
Sbjct: 61  SALK 64

[Close]
BLAST of CmoCh05G001130 vs. TAIR10
Match: AT5G11740.1 (AT5G11740.1 arabinogalactan protein 15)

HSP 1 Score: 50.8 bits (120), Expect = 7.1e-07
Identity = 32/59 (54.24%), Postives = 45/59 (76.27%), Query Frame = 1 

Query: 71  VSQASLVALIAIVFAVASVAATEAPAPSPASPATSIAPSFVSACVAAFVALAFGSTLRI 130
           +S+AS+V L+ ++ +V + A +EAPAPSP S +++I+ SFVSA VAA  AL FGS LRI
Sbjct: 3   ISKASIVVLMMVIISVVASAQSEAPAPSPTSGSSAISASFVSAGVAAVAALVFGSALRI 61

[Close]
BLAST of CmoCh05G001130 vs. NCBI nr
Match: gi|700207284|gb|KGN62403.1| (hypothetical protein Csa_2G351840 [Cucumis sativus])

HSP 1 Score: 82.0 bits (201), Expect = 8.2e-13
Identity = 52/78 (66.67%), Postives = 63/78 (80.77%), Query Frame = 1 

Query: 52  SPSSRRNHPNRQISESMAGVSQASLVALIAIVFAVASVAATEAPAPSPASPATSIAPSFV 111
           SP+S        +   MA +S+ SL+ALIA++FA++SVAA EAPAPSPASPATSIAPS V
Sbjct: 51  SPASTLTPRPHYLFYPMAALSKVSLLALIALIFALSSVAAQEAPAPSPASPATSIAPSAV 110

Query: 112 SACVAAFVALAFGSTLRI 130
           SAC+AAF+ALAFGSTLRI
Sbjct: 111 SACLAAFLALAFGSTLRI 128

[Close]
BLAST of CmoCh05G001130 vs. NCBI nr
Match: gi|1669529|dbj|BAA08394.1| (CRG16 [Cucumis sativus])

HSP 1 Score: 58.5 bits (140), Expect = 9.7e-06
Identity = 37/64 (57.81%), Postives = 47/64 (73.44%), Query Frame = 1 

Query: 68  MAGVSQASLVALIAIVFAVASVA---ATEAPAPSPASPATSIAPSFVSACVAAFVALAFG 127
           MA VS+ S +AL+A++FAV SVA   + E+PAP PASPA S+ PS   ACV AF+AL FG
Sbjct: 1   MAAVSKVSFMALVAVLFAVLSVAVAQSAESPAPPPASPANSVVPSLSFACVGAFLALLFG 60

Query: 128 STLR 129
           S L+
Sbjct: 61  SALK 64

The following BLAST results are available for this feature:
BLAST of CmoCh05G001130 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh05G001130 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LKU1_CUCSA5.7e-1366.67Uncharacterized protein OS=Cucumis sativus GN=Csa_2G351840 PE=4 SV=1[more]
Q96504_CUCSA6.8e-0657.81CRG16 OS=Cucumis sativus GN=Csa_4G645890 PE=2 SV=1[more]
BLAST of CmoCh05G001130 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G11740.17.1e-0754.24 arabinogalactan protein 15[more]
BLAST of CmoCh05G001130 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700207284|gb|KGN62403.1|8.2e-1366.67hypothetical protein Csa_2G351840 [Cucumis sativus][more]
gi|1669529|dbj|BAA08394.1|9.7e-0657.81CRG16 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh05G001130.1CmoCh05G001130.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh05G001130CmaCh05G001070Cucurbita maxima (Rimu)cmacmoB786
CmoCh05G001130Cp4.1LG11g00070Cucurbita pepo (Zucchini)cmocpeB720
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh05G001130Watermelon (97103) v2cmowmbB794
CmoCh05G001130Watermelon (97103) v2cmowmbB802
CmoCh05G001130Wax gourdcmowgoB0944
CmoCh05G001130Wax gourdcmowgoB0960
CmoCh05G001130Cucurbita maxima (Rimu)cmacmoB483
CmoCh05G001130Cucurbita moschata (Rifu)cmocmoB033
CmoCh05G001130Cucurbita moschata (Rifu)cmocmoB156
CmoCh05G001130Cucumber (Gy14) v1cgycmoB0969
CmoCh05G001130Cucumber (Gy14) v1cgycmoB1093
CmoCh05G001130Cucurbita maxima (Rimu)cmacmoB062
CmoCh05G001130Cucurbita maxima (Rimu)cmacmoB199
CmoCh05G001130Wild cucumber (PI 183967)cmocpiB782
CmoCh05G001130Wild cucumber (PI 183967)cmocpiB795
CmoCh05G001130Cucumber (Chinese Long) v2cmocuB777
CmoCh05G001130Cucumber (Chinese Long) v2cmocuB792
CmoCh05G001130Melon (DHL92) v3.5.1cmomeB718
CmoCh05G001130Melon (DHL92) v3.5.1cmomeB729
CmoCh05G001130Watermelon (Charleston Gray)cmowcgB708
CmoCh05G001130Watermelon (Charleston Gray)cmowcgB716
CmoCh05G001130Watermelon (97103) v1cmowmB748
CmoCh05G001130Watermelon (97103) v1cmowmB754
CmoCh05G001130Cucurbita pepo (Zucchini)cmocpeB734
CmoCh05G001130Cucurbita pepo (Zucchini)cmocpeB740
CmoCh05G001130Cucurbita pepo (Zucchini)cmocpeB750
CmoCh05G001130Bottle gourd (USVL1VR-Ls)cmolsiB715
CmoCh05G001130Bottle gourd (USVL1VR-Ls)cmolsiB731
CmoCh05G001130Cucumber (Gy14) v2cgybcmoB238
CmoCh05G001130Cucumber (Gy14) v2cgybcmoB533
CmoCh05G001130Melon (DHL92) v3.6.1cmomedB815
CmoCh05G001130Melon (DHL92) v3.6.1cmomedB826
CmoCh05G001130Silver-seed gourdcarcmoB0443
CmoCh05G001130Silver-seed gourdcarcmoB0263
CmoCh05G001130Silver-seed gourdcarcmoB0949
CmoCh05G001130Silver-seed gourdcarcmoB1047
CmoCh05G001130Cucumber (Chinese Long) v3cmocucB0918
CmoCh05G001130Cucumber (Chinese Long) v3cmocucB0933
CmoCh05G001130Cucumber (Chinese Long) v3cmocucB0949