Cp4.1LG10g11580 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG10g11580
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionExosome complex component RRP43
LocationCp4.1LG10 : 8841241 .. 8844781 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CCTCCTCTCCTCCGTCATAGCAACGGGCAGTCTTTTCATTCTTCATTTTTTTTGAACCGTCATACCTTTCTTGCACTCATCCCTCCGATTACCAGCTACTGCACCCCAACCCGCACGCCGCTGTCTCAGCCGCCTGATAAGCTCGCCGCTGCTACCTCCGTCTCACGCTCTCTCGTCTCTTTGCGCAATCAGCGCTACTTATAGGCTTCAGCCCCTAACCCGCGCCACTGGTGAGATCTCTGTCAGCCTCTCTGTCTAAGGATTTGAGTTTTTGTTTGTTTTTTTTTTCTATTTTGTTTCTTTGATTGATTCTGTTCGTCCACGAAGGATAAGTTCTAAAGAAGCATTTAATTTTGTTGATTTCTTCTTCAACAAATGTTCAATCTATCCGGAGGAAAACATAAAATCAAAATGCGTCAGGAGTTTGCTTGAATGGTTCTGAGTTTTGTTGAATATAGAAAGGAAATTATCTATGCTAATGAACTGGTGTAGGGAGGCTTAAATTTATTGCTCGAATATAGAAGAAACGGTCTCCAATGGCGGTAGAATTCTAATTTTAAAAATCTTTCCAAATCCTCGACCGATTTGGAATGGAGTTTTTTTTTAAAGCTAGATTTCTAATCAAAACTGGTTTCCAATTTCTGAGAAACAGATAAGAGTACAAACAATGGGACTGCCAAATGCTGCTTCTGGGGACTTGTCGTCGGAAATGGAGGTTGATGCTTTTAGACGACTCTTTCCCATTCAGTTTTTTGAGCGTCATCTCGCTGAATCAATACGTCCTGATGGAAGAGCACTGGGAAAAGCTAGGGATACAACCATTGCTCTTGGTTAGTTGTAAGCTTGGATTTTCAGAAAATTGCCATTTCTTACCATTTCCAGCTTTTGTTTATAATCTTGAGTTTGCTTGATTGATTTTGACTCTCAAAACTGAATTTGGGTATCGTCTATTCATTTAAGGACCAGTATCATCTGCGAACGGATCAGCCCTGGCTAAGGTTGGTTCTACGGTAAGTGCCTTCACATTTAACCTTTTCATATGTGCTGGGATTTTGTGACGGTTTATTCTTAAGTTTATATAGTGCAGACAATGTTGGCTGCTATTAAAATGGAGGTAATGACGCCTTCCATAGAGTCACCGGATGAGGGTTGCATAGGTTGGTCATTGTCAACAGCTAGATATTTTTGCTCCTTGTTTATCATAATCCTTATGATAACATGCTATACATCTTTGTGATATTGGGTCTATCTTTTTCCAGCTGTTGATTTCCACATGCCTCCCATATGCTCTCCAATTGTTAGGCCCGGGAGACCAGCTGAAGCAGCACCTGTGATTTCAAAGCAGTTATCTGACACTATTTCAAGGTACTATTTCACATTTCTTGCAGTTCTACTTCGATCTATTGCAATTTGCAGATGATATTTTTCTATTAAGTGTGGATGGAAATCAAGCTTTAAAAAGTATTTTGAATGCTATTGAAATGTTTGAGATGCCTTTGCTCACTTTAAATATGAAGGGTCTCAATAATCTTAGTTAAACACAGCAGCAGGATTTATACAAGGAATCGTGGCAAGTCTTGAGGCAGTTTCAAACATGATCTACACTACAAGATTCAGGCTAGTGGGAAAATTATAACAGAAGAACTAACCCCACTAACTCAGAAAATAATAAATTCAATGAACAAATATAAAGCACAAGGCTGGACGATGAATGCTGTCTTTGCAGTTAATTGAACGACACTGAAGTCTGATCTGATGAAGCTAGTGTAACGGTACCATTTGGGCTGAGATTCTAACATTCTCCTGTGGAGTGGGCGCATGGAGCAAACTTGGAAATGCCTCTTTGGGGAATCTGACTTTTAAGGACTCCTGGAAATGAATCATAGATAAATTCAGGTGCAATAATTCAAAATGGAAGAATTTACTTCTCTCTTGGTGTGGAATATTATCTCTTGTTCAATCGGTACCCTCTATTATTCCCCAATATCATGTTTTTCTTTTCAGAATGCCTTCCAAGATTGCTGATATTCTATAAAAGATCATCAGAGACTTTTTAGACAGCAGTGACAGGGTAAAGGAAAACATTTGGTAAATTGGAAAATAACTTGCCTCCCTTTTGCCCCTGGTGACTCGTGGATTTGAAACTAGAGAAGTAGAAATATTTACCTCATGACTAAGTGCCTTTGTAGATTTCCTAAAGAGAGGGAGGCTCTTTGGACAGTATAAAATTGTGATGAGAGACTATGACCCCTTCATAATTGGGGTTGGAGAGAAAGTGATTAAGAAAGAAGCCCATGGGTTAGCATGTATAAACTATAAAAACATCTCTCATGCTGTTTACTAAATAAACAAGGCTCTTTTGGGGAGCAAAATGACACACTTCGGAGCTCTGCTGGACCCCTCTCGCCTTTATTCCTGCTAACAGCAAAGGCAAGACTCTTTTGCAAGGCTAGAATGGTGAACAAAACTATTGGTTACTCCACATTAAAGAGATGTTCAGAGACACTGAAGTAGAAGATCGGATCTCCCTTATGGATGTTTTGGTTCGTGTGGTTCTTAGGGAGGGGATGATATTTTGCAATGTTCTCTTGATGGGTCATTAAGCTACTTCACTTTTCATTTTTTTTTGGGAAAAAAAATTAATTTCAACCCTAAACTCTAAAAATTGTTCATGTATAATTTTCACGTGTAAACTACTTTAGGTTCATGATAAGTTCTCTCTCTTCATTTTAAATTTTCTTAAAGGACTTACCTATTGCAAACTATTCTGCTTGCGATATTGTGTTTCTCATTATTTTAGAAGTGATAGAAATCTGGCAAGAGGAATGCAATACACTTTTTTGATTTCTGCAATTTCCTTTAAATCTTTCTAACTAATCAAGAAACTGATGATGTGAATTCTTTAGTTCTGGGATGATTGATCTGAGGGAACTATCTCTTGTTAAAGGAAAAGCTGCTTGGATGGCGTACTTGGTATGTATTTTAAAGTCATGCACTGTCAATGTATTTTTATGCTAGAAGCATCTTAGTATTTGAAGTGAGGTGCCTTTACTGATGTACCTGTATACTTTGCTTCTGAAATTTGTTCACTTGCATCATCCTTACTCTTATTGGACATTTTTTCTCTATAGCCTGATTTTTGGTCAGAATGCAGCTTTATTATTGTGGTTAATTATTTTAAATGAAATAGCAACTTGATATGCATTCCACAGGATATTTACTGTTTGGATGCCGATGGATCTCTATTTGATGCTGCACTTCTTTCTGCAGCTGCTGCATTTTCTCACTGTGAGGTTTCAGGCTCTCAACTTGTTCATAACTTGATATATTTCTGCATAATTTTGTAGGTGTTATGGTTATGGCAGTAATGCTGGTTATAATGGGACATTTGTCCTCCACTAACATTAAGGATAGTTTTTCAGATCATAGATTGATACTTTCTGCTTTTAATCCTTTACATTTCAGATTTTTTCCCTCTTTAGATTTCGTTTGTTGTTATTAAAATCTATAGGGGGCATTAAGTAATCATGTCCTGAAGTAA

mRNA sequence

CCTCCTCTCCTCCGTCATAGCAACGGGCAGTCTTTTCATTCTTCATTTTTTTTGAACCGTCATACCTTTCTTGCACTCATCCCTCCGATTACCAGCTACTGCACCCCAACCCGCACGCCGCTGTCTCAGCCGCCTGATAAGCTCGCCGCTGCTACCTCCGTCTCACGCTCTCTCGTCTCTTTGCGCAATCAGCGCTACTTATAGGCTTCAGCCCCTAACCCGCGCCACTGATAAGAGTACAAACAATGGGACTGCCAAATGCTGCTTCTGGGGACTTGTCGTCGGAAATGGAGGTTGATGCTTTTAGACGACTCTTTCCCATTCAGTTTTTTGAGCGTCATCTCGCTGAATCAATACGTCCTGATGGAAGAGCACTGGGAAAAGCTAGGGATACAACCATTGCTCTTGGACCAGTATCATCTGCGAACGGATCAGCCCTGGCTAAGGTTGGTTCTACGACAATGTTGGCTGCTATTAAAATGGAGGTAATGACGCCTTCCATAGAGTCACCGGATGAGGGTTGCATAGCTGTTGATTTCCACATGCCTCCCATATGCTCTCCAATTGTTAGGCCCGGGAGACCAGCTGAAGCAGCACCTGTGATTTCAAAGCAGTTATCTGACACTATTTCAAGTTCTGGGATGATTGATCTGAGGGAACTATCTCTTGTTAAAGGAAAAGCTGCTTGGATGGCGTACTTGGATATTTACTGTTTGGATGCCGATGGATCTCTATTTGATGCTGCACTTCTTTCTGCAGCTGCTGCATTTTCTCACTGTGAGGGGGCATTAAGTAATCATGTCCTGAAGTAA

Coding sequence (CDS)

ATGGGACTGCCAAATGCTGCTTCTGGGGACTTGTCGTCGGAAATGGAGGTTGATGCTTTTAGACGACTCTTTCCCATTCAGTTTTTTGAGCGTCATCTCGCTGAATCAATACGTCCTGATGGAAGAGCACTGGGAAAAGCTAGGGATACAACCATTGCTCTTGGACCAGTATCATCTGCGAACGGATCAGCCCTGGCTAAGGTTGGTTCTACGACAATGTTGGCTGCTATTAAAATGGAGGTAATGACGCCTTCCATAGAGTCACCGGATGAGGGTTGCATAGCTGTTGATTTCCACATGCCTCCCATATGCTCTCCAATTGTTAGGCCCGGGAGACCAGCTGAAGCAGCACCTGTGATTTCAAAGCAGTTATCTGACACTATTTCAAGTTCTGGGATGATTGATCTGAGGGAACTATCTCTTGTTAAAGGAAAAGCTGCTTGGATGGCGTACTTGGATATTTACTGTTTGGATGCCGATGGATCTCTATTTGATGCTGCACTTCTTTCTGCAGCTGCTGCATTTTCTCACTGTGAGGGGGCATTAAGTAATCATGTCCTGAAGTAA

Protein sequence

MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSANGSALAKVGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHCEGALSNHVLK
Homology
[Close]
BLAST of Cp4.1LG10g11580 vs. Swiss-Prot
Match: EXOS8_HUMAN (Exosome complex component RRP43 OS=Homo sapiens GN=EXOSC8 PE=1 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 5.7e-31
Identity = 63/160 (39.38%), Postives = 102/160 (63.75%), Query Frame = 1 

Query: 20  FRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSANGSALAKVGSTTMLAAIKM 79
           F+ + P++++ R L E+ RPDGR LG+ R TT+ +G +S+A+GSAL K+G+TT++  +K 
Sbjct: 5   FKTVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKA 64

Query: 80  EVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLREL 139
           E   PS ++PD+G +  +  +PP+CS   R G P E A V S+ ++D I +S +I   +L
Sbjct: 65  EFAAPSTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDL 124

Query: 140 SLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHCE 180
            +  GK  W+ Y D+ CLD DG++ DA   +  AA  + +
Sbjct: 125 CISPGKLVWVLYCDLICLDYDGNILDACTFALLAALKNVQ 164

[Close]
BLAST of Cp4.1LG10g11580 vs. Swiss-Prot
Match: EXOS8_MOUSE (Exosome complex component RRP43 OS=Mus musculus GN=Exosc8 PE=1 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 7.5e-31
Identity = 62/160 (38.75%), Postives = 102/160 (63.75%), Query Frame = 1 

Query: 20  FRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSANGSALAKVGSTTMLAAIKM 79
           F+ + P++++ R L E+ RPDGR LG+ R TT+ +G +S+A+GSAL K+G+TT++  +K 
Sbjct: 5   FKTVEPLEYYRRFLKENCRPDGRELGEFRATTVNIGSISTADGSALVKLGNTTVICGVKA 64

Query: 80  EVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLREL 139
           E   P +++PD G +  +  +PP+CS   R G P E A V S+ ++D + +S +I   +L
Sbjct: 65  EFAAPPVDAPDRGYVVPNVDLPPLCSSRFRTGPPGEEAQVTSQFIADVVDNSQVIKKEDL 124

Query: 140 SLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHCE 180
            +  GK AW+ Y D+ CLD DG++ DA   +  AA  + +
Sbjct: 125 CISPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQ 164

[Close]
BLAST of Cp4.1LG10g11580 vs. Swiss-Prot
Match: EXOS8_BOVIN (Exosome complex component RRP43 OS=Bos taurus GN=EXOSC8 PE=2 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 9.1e-29
Identity = 61/160 (38.12%), Postives = 100/160 (62.50%), Query Frame = 1 

Query: 20  FRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSANGSALAKVGSTTMLAAIKM 79
           F+ + P++++ R L E+ RPDGR LG+ R TT+ +G + +A+GSAL K+G+TT++  IK 
Sbjct: 5   FKTVEPLEYYRRFLKENCRPDGRELGEFRTTTVNVGSIGTADGSALVKLGNTTVICGIKA 64

Query: 80  EVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLREL 139
           E   P  ++PD+G +  +  + P+CS   R G P E A V S+ ++D I +S +I   +L
Sbjct: 65  EFGAPPTDAPDKGYVVPNVDLSPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDL 124

Query: 140 SLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHCE 180
            +  GK AW+ Y D+ CL+ DG++ DA   +  AA  + +
Sbjct: 125 CISSGKLAWVLYCDLICLNHDGNILDACTFALLAALKNVQ 164

[Close]
BLAST of Cp4.1LG10g11580 vs. Swiss-Prot
Match: RRP43_SCHPO (Exosome complex component rrp43 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rrp43 PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 4.7e-25
Identity = 58/155 (37.42%), Postives = 93/155 (60.00%), Query Frame = 1 

Query: 20  FRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSANGSALAKVGSTTMLAAIKM 79
           F+++ P Q+    L + +R DGR++ + R+  I    +S+ANGSA+ + G    +  IK 
Sbjct: 17  FKKITPEQYLSHLLNQDVRSDGRSVSEFREIVINDNCISTANGSAIIRAGENVFVCGIKA 76

Query: 80  EVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLREL 139
           E+  P   SP+EG I  +  + P+CS   +PG P++ A V+S++L  T+  S +I+L+ L
Sbjct: 77  EIAEPFENSPNEGWIVPNLELSPLCSSKFKPGPPSDLAQVVSQELHQTLQQSNLINLQSL 136

Query: 140 SLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAA 175
            + + KAAW+ Y DI CL+ DGS FD A  +  AA
Sbjct: 137 CIFEKKAAWVLYADIICLNYDGSAFDYAWAALFAA 171

[Close]
BLAST of Cp4.1LG10g11580 vs. Swiss-Prot
Match: RRP42_METKA (Exosome complex component Rrp42 OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=rrp42 PE=3 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.7e-22
Identity = 56/142 (39.44%), Postives = 88/142 (61.97%), Query Frame = 1 

Query: 38  RPDGRALGKARDTTIALGPVSSANGSALAKVGSTTMLAAIKMEVMTPSIESPDEGCIAVD 97
           R DGR   + R   +  G +S ANGSAL ++G+T ++  +K+EV  P  +SP+EG +AV+
Sbjct: 23  RIDGRDFEEFRPIEVRAGVISKANGSALVRLGNTQLVVGVKLEVGRPYPDSPNEGALAVN 82

Query: 98  FHMPPICSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCL 157
             + P+  P   PG P E A  +S+ +   I  S MIDL EL + +G+  W+ ++DI+ L
Sbjct: 83  AELVPLADPSFEPGPPDENAIELSRVVDRGIRESEMIDLEELCIEEGEHCWVTFVDIHVL 142

Query: 158 DADGSLFDAALLSAAAAFSHCE 180
           D DG+LFDA+++ + +A S  E
Sbjct: 143 DHDGNLFDASMIGSVSALSITE 164

[Close]
BLAST of Cp4.1LG10g11580 vs. TrEMBL
Match: A0A0D2Q4I8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G116000 PE=4 SV=1)

HSP 1 Score: 303.1 bits (775), Expect = 2.3e-79
Identity = 151/179 (84.36%), Postives = 169/179 (94.41%), Query Frame = 1 

Query: 1   MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA 60
           MGLPNA SGDLS+E+EVDAFRRLFP++F+E+HL ESIRPD R LG+AR+TTIALG V+SA
Sbjct: 1   MGLPNA-SGDLSTEVEVDAFRRLFPLRFYEKHLLESIRPDARPLGRARETTIALGAVASA 60

Query: 61  NGSALAKVGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI 120
           NGSALAK+GSTTMLAAIKMEVMTPS+E+PDEGCIA+DFHMPPICSPIVRPGRPAEAAPV+
Sbjct: 61  NGSALAKIGSTTMLAAIKMEVMTPSLETPDEGCIAIDFHMPPICSPIVRPGRPAEAAPVV 120

Query: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHCE 180
           +KQLSDTI SSGMI+L+ELSLV GKAAWMAYLDIYCLDADG+LFD ALLSA AAFSH E
Sbjct: 121 AKQLSDTILSSGMINLKELSLVSGKAAWMAYLDIYCLDADGALFDTALLSAVAAFSHLE 178

[Close]
BLAST of Cp4.1LG10g11580 vs. TrEMBL
Match: A0A0D2QBI8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G116000 PE=4 SV=1)

HSP 1 Score: 303.1 bits (775), Expect = 2.3e-79
Identity = 151/179 (84.36%), Postives = 169/179 (94.41%), Query Frame = 1 

Query: 1   MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA 60
           MGLPNA SGDLS+E+EVDAFRRLFP++F+E+HL ESIRPD R LG+AR+TTIALG V+SA
Sbjct: 1   MGLPNA-SGDLSTEVEVDAFRRLFPLRFYEKHLLESIRPDARPLGRARETTIALGAVASA 60

Query: 61  NGSALAKVGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI 120
           NGSALAK+GSTTMLAAIKMEVMTPS+E+PDEGCIA+DFHMPPICSPIVRPGRPAEAAPV+
Sbjct: 61  NGSALAKIGSTTMLAAIKMEVMTPSLETPDEGCIAIDFHMPPICSPIVRPGRPAEAAPVV 120

Query: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHCE 180
           +KQLSDTI SSGMI+L+ELSLV GKAAWMAYLDIYCLDADG+LFD ALLSA AAFSH E
Sbjct: 121 AKQLSDTILSSGMINLKELSLVSGKAAWMAYLDIYCLDADGALFDTALLSAVAAFSHLE 178

[Close]
BLAST of Cp4.1LG10g11580 vs. TrEMBL
Match: A0A061EX61_THECC (3'-5'-exoribonuclease family protein OS=Theobroma cacao GN=TCM_024636 PE=4 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 3.0e-79
Identity = 151/179 (84.36%), Postives = 167/179 (93.30%), Query Frame = 1 

Query: 1   MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA 60
           MGLPNA SGDLS+E+EVDAFRRLFP++F+E+HL+ESIRPD R LG+ARDTTIALG V+SA
Sbjct: 1   MGLPNA-SGDLSTEVEVDAFRRLFPLRFYEKHLSESIRPDARPLGRARDTTIALGAVASA 60

Query: 61  NGSALAKVGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI 120
           NGSALAK+GSTTMLAAIKMEVMTPS E+PDEGC+A+DFHMPPICSPIVRPGRPAEAAPV+
Sbjct: 61  NGSALAKIGSTTMLAAIKMEVMTPSTETPDEGCVAIDFHMPPICSPIVRPGRPAEAAPVV 120

Query: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHCE 180
           SKQLSDTI SSGMI L+EL LV GKAAWMAYLDIYCLDADG+LFD ALLSA AAFSH E
Sbjct: 121 SKQLSDTILSSGMISLKELCLVSGKAAWMAYLDIYCLDADGALFDTALLSAVAAFSHLE 178

[Close]
BLAST of Cp4.1LG10g11580 vs. TrEMBL
Match: U5G927_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s04970g PE=4 SV=1)

HSP 1 Score: 300.8 bits (769), Expect = 1.1e-78
Identity = 152/179 (84.92%), Postives = 169/179 (94.41%), Query Frame = 1 

Query: 1   MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA 60
           MG+P+A SGDLSSEMEVDAFRRLFP+++FERHL+ESIRPD R LG+ARDTT+ALG V+SA
Sbjct: 1   MGVPDA-SGDLSSEMEVDAFRRLFPLRYFERHLSESIRPDARPLGRARDTTLALGAVASA 60

Query: 61  NGSALAKVGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI 120
           +GSALAK+GSTTMLAAIKMEVMTPS ESP+EG IA+DFHMPPICSPIVRPGRPAEAAPVI
Sbjct: 61  HGSALAKIGSTTMLAAIKMEVMTPSTESPEEGSIAIDFHMPPICSPIVRPGRPAEAAPVI 120

Query: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHCE 180
           SKQLSDTISSSGMI+L+ELSLV GKAAWMAYLDIYCLDADG+LFDAALLSA  AFSH +
Sbjct: 121 SKQLSDTISSSGMINLKELSLVSGKAAWMAYLDIYCLDADGALFDAALLSAVGAFSHLQ 178

[Close]
BLAST of Cp4.1LG10g11580 vs. TrEMBL
Match: A0A067JQ87_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21085 PE=4 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 2.5e-78
Identity = 149/179 (83.24%), Postives = 166/179 (92.74%), Query Frame = 1 

Query: 1   MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA 60
           MGLPN  SGDLSSEMEVDAFRRLFP++++ERHLAESIRPD R LG ARDTT+ALG V+SA
Sbjct: 1   MGLPNV-SGDLSSEMEVDAFRRLFPLRYYERHLAESIRPDARPLGSARDTTLALGAVASA 60

Query: 61  NGSALAKVGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI 120
           +GSALAK+GSTTMLAAIKMEVMTPS +SPDEGCIA+DFHMPPICSP+VRPGRPAEAAPV+
Sbjct: 61  DGSALAKIGSTTMLAAIKMEVMTPSTDSPDEGCIAIDFHMPPICSPLVRPGRPAEAAPVV 120

Query: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHCE 180
           +KQLSDTI SSGMI+L+ELSLV GKAAWMAYLDIYCLDADG+LFDAAL S  AAFSH +
Sbjct: 121 AKQLSDTILSSGMINLKELSLVSGKAAWMAYLDIYCLDADGALFDAALFSVVAAFSHLQ 178

[Close]
BLAST of Cp4.1LG10g11580 vs. TAIR10
Match: AT1G60080.1 (AT1G60080.1 3'-5'-exoribonuclease family protein)

HSP 1 Score: 287.7 bits (735), Expect = 5.1e-78
Identity = 143/179 (79.89%), Postives = 165/179 (92.18%), Query Frame = 1 

Query: 1   MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA 60
           MG+P+AA  DLS+EMEVDAFRR+FP++FFERHL+ES+RPDGR LGKARDT + LG VS+A
Sbjct: 1   MGIPDAAQ-DLSTEMEVDAFRRIFPLRFFERHLSESLRPDGRQLGKARDTIVNLGLVSTA 60

Query: 61  NGSALAKVGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI 120
           +GSALAK+GSTTMLAAI+MEVMTPS +SPDEGCIA++FHMPPICSP VRPGRPAEAAPVI
Sbjct: 61  DGSALAKIGSTTMLAAIRMEVMTPSTDSPDEGCIAIEFHMPPICSPTVRPGRPAEAAPVI 120

Query: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHCE 180
           SK+LSDTI SSGMIDL+EL LV GKAAWM YLDIYCLDADG+LFDAALL+A AAFS+ +
Sbjct: 121 SKRLSDTILSSGMIDLKELCLVSGKAAWMGYLDIYCLDADGALFDAALLAAVAAFSNLQ 178

[Close]
BLAST of Cp4.1LG10g11580 vs. TAIR10
Match: AT3G60500.1 (AT3G60500.1 3'-5'-exoribonuclease family protein)

HSP 1 Score: 78.2 bits (191), Expect = 6.1e-15
Identity = 45/148 (30.41%), Postives = 76/148 (51.35%), Query Frame = 1 

Query: 27  QFFERHLAESIRPDGRALGKARDTTIALGPVSSANGSALAKVGSTTMLAAIKMEVMTPSI 86
           +F E  L   +R DGR L   R  TI  G      GS+  ++G T ++  +  +++ P  
Sbjct: 17  KFVETALQSELRVDGRGLYDYRKLTIKFG---KEYGSSEVQLGQTHVMGFVTAQLVQPYK 76

Query: 87  ESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLRELSLVKGKA 146
           + P+EG +++     P+  P   PGRP E+A  + + +   +  S  +D   L ++ GK 
Sbjct: 77  DRPNEGSLSIFTEFSPMADPSFEPGRPGESAVELGRIIDRGLRESRAVDTESLCVLAGKM 136

Query: 147 AWMAYLDIYCLDADGSLFDAALLSAAAA 175
            W   +D++ LD  G+L DAA ++A AA
Sbjct: 137 VWSVRIDLHILDNGGNLVDAANIAALAA 161

[Close]
BLAST of Cp4.1LG10g11580 vs. TAIR10
Match: AT3G07750.1 (AT3G07750.1 3'-5'-exoribonuclease family protein)

HSP 1 Score: 69.7 bits (169), Expect = 2.2e-12
Identity = 49/155 (31.61%), Postives = 78/155 (50.32%), Query Frame = 1 

Query: 28  FFERHLAESIRPDGRALGKARDTTIALGPVSSANGSALAKVGSTTMLAAIKMEVMTPSIE 87
           F +  +A+ +R DGR     R   +  G +  ANGSA  ++G T ++A++K E+  PS  
Sbjct: 10  FIKGGIAQDLRTDGRKRLTYRPIYVETGVIPQANGSARVRIGGTDVIASVKAEIGRPSSL 69

Query: 88  SPDEGCIAVDFHMPPICSPIV--RPGR--PAEAAPVISKQLSDTISSSGM-IDLRELSLV 147
            PD+G +AV     P   P    R G    +E A  + + L    S +G  I+L  L + 
Sbjct: 70  QPDKGKVAVFIDCSPTAEPTFGGRGGEELSSELALALQRCLLGGKSGAGAGINLSSLLIK 129

Query: 148 KGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSH 178
           +GK  W  Y+D   + +DG+L DA   +  AA ++
Sbjct: 130 EGKVCWDLYIDGLVISSDGNLLDALGAAIKAALTN 164

[Close]
BLAST of Cp4.1LG10g11580 vs. NCBI nr
Match: gi|659121683|ref|XP_008460773.1| (PREDICTED: exosome complex component RRP43 isoform X2 [Cucumis melo])

HSP 1 Score: 339.7 bits (870), Expect = 3.2e-90
Identity = 171/179 (95.53%), Postives = 178/179 (99.44%), Query Frame = 1 

Query: 1   MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA 60
           MGLPNAASGDLSS+MEVDAFRRLFPIQF+ERHLAESIRPDGRALGKARDTTIALGPVSSA
Sbjct: 1   MGLPNAASGDLSSQMEVDAFRRLFPIQFYERHLAESIRPDGRALGKARDTTIALGPVSSA 60

Query: 61  NGSALAKVGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI 120
           NGSALAK+GSTTMLAAIKMEVMTPS+ESPDEGCIA+DFHMPP+CSPIVRPGRPAEAAPVI
Sbjct: 61  NGSALAKIGSTTMLAAIKMEVMTPSVESPDEGCIALDFHMPPVCSPIVRPGRPAEAAPVI 120

Query: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHCE 180
           SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSH +
Sbjct: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQ 179

[Close]
BLAST of Cp4.1LG10g11580 vs. NCBI nr
Match: gi|659121681|ref|XP_008460772.1| (PREDICTED: exosome complex component RRP43 isoform X1 [Cucumis melo])

HSP 1 Score: 339.7 bits (870), Expect = 3.2e-90
Identity = 171/179 (95.53%), Postives = 178/179 (99.44%), Query Frame = 1 

Query: 1   MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA 60
           MGLPNAASGDLSS+MEVDAFRRLFPIQF+ERHLAESIRPDGRALGKARDTTIALGPVSSA
Sbjct: 13  MGLPNAASGDLSSQMEVDAFRRLFPIQFYERHLAESIRPDGRALGKARDTTIALGPVSSA 72

Query: 61  NGSALAKVGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI 120
           NGSALAK+GSTTMLAAIKMEVMTPS+ESPDEGCIA+DFHMPP+CSPIVRPGRPAEAAPVI
Sbjct: 73  NGSALAKIGSTTMLAAIKMEVMTPSVESPDEGCIALDFHMPPVCSPIVRPGRPAEAAPVI 132

Query: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHCE 180
           SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSH +
Sbjct: 133 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQ 191

[Close]
BLAST of Cp4.1LG10g11580 vs. NCBI nr
Match: gi|449463354|ref|XP_004149399.1| (PREDICTED: exosome complex component RRP43 [Cucumis sativus])

HSP 1 Score: 337.0 bits (863), Expect = 2.1e-89
Identity = 169/179 (94.41%), Postives = 177/179 (98.88%), Query Frame = 1 

Query: 1   MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA 60
           MGLPNAASGDLSS+MEVDAFRRLFPIQF+ERHL ESIRPDGR+LGKARDTTIALGPVSSA
Sbjct: 1   MGLPNAASGDLSSQMEVDAFRRLFPIQFYERHLTESIRPDGRSLGKARDTTIALGPVSSA 60

Query: 61  NGSALAKVGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI 120
           NGSALAK+GSTTMLAAIKMEVMTPS+ESPDEGCIA+DFHMPP+CSPIVRPGRPAEAAPVI
Sbjct: 61  NGSALAKIGSTTMLAAIKMEVMTPSVESPDEGCIALDFHMPPVCSPIVRPGRPAEAAPVI 120

Query: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHCE 180
           SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSH +
Sbjct: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQ 179

[Close]
BLAST of Cp4.1LG10g11580 vs. NCBI nr
Match: gi|823132872|ref|XP_012464639.1| (PREDICTED: exosome complex component RRP43-like [Gossypium raimondii])

HSP 1 Score: 303.1 bits (775), Expect = 3.3e-79
Identity = 151/179 (84.36%), Postives = 169/179 (94.41%), Query Frame = 1 

Query: 1   MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA 60
           MGLPNA SGDLS+E+EVDAFRRLFP++F+E+HL ESIRPD R LG+AR+TTIALG V+SA
Sbjct: 1   MGLPNA-SGDLSTEVEVDAFRRLFPLRFYEKHLLESIRPDARPLGRARETTIALGAVASA 60

Query: 61  NGSALAKVGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI 120
           NGSALAK+GSTTMLAAIKMEVMTPS+E+PDEGCIA+DFHMPPICSPIVRPGRPAEAAPV+
Sbjct: 61  NGSALAKIGSTTMLAAIKMEVMTPSLETPDEGCIAIDFHMPPICSPIVRPGRPAEAAPVV 120

Query: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHCE 180
           +KQLSDTI SSGMI+L+ELSLV GKAAWMAYLDIYCLDADG+LFD ALLSA AAFSH E
Sbjct: 121 AKQLSDTILSSGMINLKELSLVSGKAAWMAYLDIYCLDADGALFDTALLSAVAAFSHLE 178

[Close]
BLAST of Cp4.1LG10g11580 vs. NCBI nr
Match: gi|763746817|gb|KJB14256.1| (hypothetical protein B456_002G116000 [Gossypium raimondii])

HSP 1 Score: 303.1 bits (775), Expect = 3.3e-79
Identity = 151/179 (84.36%), Postives = 169/179 (94.41%), Query Frame = 1 

Query: 1   MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA 60
           MGLPNA SGDLS+E+EVDAFRRLFP++F+E+HL ESIRPD R LG+AR+TTIALG V+SA
Sbjct: 1   MGLPNA-SGDLSTEVEVDAFRRLFPLRFYEKHLLESIRPDARPLGRARETTIALGAVASA 60

Query: 61  NGSALAKVGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI 120
           NGSALAK+GSTTMLAAIKMEVMTPS+E+PDEGCIA+DFHMPPICSPIVRPGRPAEAAPV+
Sbjct: 61  NGSALAKIGSTTMLAAIKMEVMTPSLETPDEGCIAIDFHMPPICSPIVRPGRPAEAAPVV 120

Query: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHCE 180
           +KQLSDTI SSGMI+L+ELSLV GKAAWMAYLDIYCLDADG+LFD ALLSA AAFSH E
Sbjct: 121 AKQLSDTILSSGMINLKELSLVSGKAAWMAYLDIYCLDADGALFDTALLSAVAAFSHLE 178

The following BLAST results are available for this feature:
BLAST of Cp4.1LG10g11580 vs. Swiss-Prot
Match NameE-valueIdentityDescription
EXOS8_HUMAN5.7e-3139.38Exosome complex component RRP43 OS=Homo sapiens GN=EXOSC8 PE=1 SV=1[more]
EXOS8_MOUSE7.5e-3138.75Exosome complex component RRP43 OS=Mus musculus GN=Exosc8 PE=1 SV=1[more]
EXOS8_BOVIN9.1e-2938.13Exosome complex component RRP43 OS=Bos taurus GN=EXOSC8 PE=2 SV=1[more]
RRP43_SCHPO4.7e-2537.42Exosome complex component rrp43 OS=Schizosaccharomyces pombe (strain 972 / ATCC ... [more]
RRP42_METKA1.7e-2239.44Exosome complex component Rrp42 OS=Methanopyrus kandleri (strain AV19 / DSM 6324... [more]
BLAST of Cp4.1LG10g11580 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0D2Q4I8_GOSRA2.3e-7984.36Uncharacterized protein OS=Gossypium raimondii GN=B456_002G116000 PE=4 SV=1[more]
A0A0D2QBI8_GOSRA2.3e-7984.36Uncharacterized protein OS=Gossypium raimondii GN=B456_002G116000 PE=4 SV=1[more]
A0A061EX61_THECC3.0e-7984.363'-5'-exoribonuclease family protein OS=Theobroma cacao GN=TCM_024636 PE=4 SV=1[more]
U5G927_POPTR1.1e-7884.92Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s04970g PE=4 SV=1[more]
A0A067JQ87_JATCU2.5e-7883.24Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21085 PE=4 SV=1[more]
BLAST of Cp4.1LG10g11580 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G60080.15.1e-7879.89 3'-5'-exoribonuclease family protein[more]
AT3G60500.16.1e-1530.41 3'-5'-exoribonuclease family protein[more]
AT3G07750.12.2e-1231.61 3'-5'-exoribonuclease family protein[more]
BLAST of Cp4.1LG10g11580 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659121683|ref|XP_008460773.1|3.2e-9095.53PREDICTED: exosome complex component RRP43 isoform X2 [Cucumis melo][more]
gi|659121681|ref|XP_008460772.1|3.2e-9095.53PREDICTED: exosome complex component RRP43 isoform X1 [Cucumis melo][more]
gi|449463354|ref|XP_004149399.1|2.1e-8994.41PREDICTED: exosome complex component RRP43 [Cucumis sativus][more]
gi|823132872|ref|XP_012464639.1|3.3e-7984.36PREDICTED: exosome complex component RRP43-like [Gossypium raimondii][more]
gi|763746817|gb|KJB14256.1|3.3e-7984.36hypothetical protein B456_002G116000 [Gossypium raimondii][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006401RNA catabolic process
GO:0006396RNA processing
Vocabulary: Cellular Component
TermDefinition
GO:0000178exosome (RNase complex)
Vocabulary: INTERPRO
TermDefinition
IPR020568Ribosomal_S5_D2-typ_fold
IPR001247ExoRNase_PH_dom1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
biological_process GO:0006401 RNA catabolic process
biological_process GO:0006396 RNA processing
biological_process GO:0009058 biosynthetic process
cellular_component GO:0005829 cytosol
cellular_component GO:0000178 exosome (RNase complex)
molecular_function GO:0004527 exonuclease activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG10g11580.1Cp4.1LG10g11580.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001247Exoribonuclease, phosphorolytic domain 1PFAMPF01138RNase_PHcoord: 48..177
score: 1.8
IPR020568Ribosomal protein S5 domain 2-type foldunknownSSF54211Ribosomal protein S5 domain 2-likecoord: 18..178
score: 1.52
NoneNo IPR availablePANTHERPTHR11097EXOSOME COMPLEX EXONUCLEASE RIBOSOMAL RNA PROCESSING PROTEINcoord: 9..179
score: 4.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG10g11580Cucsa.374690Cucumber (Gy14) v1cgycpeB0988
Cp4.1LG10g11580Cla002765Watermelon (97103) v1cpewmB090
Cp4.1LG10g11580Csa4G165870Cucumber (Chinese Long) v2cpecuB080
Cp4.1LG10g11580ClCG04G000130Watermelon (Charleston Gray)cpewcgB075
Cp4.1LG10g11580CSPI04G10580Wild cucumber (PI 183967)cpecpiB077
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG10g11580Cucurbita pepo (Zucchini)cpecpeB085
Cp4.1LG10g11580Cucurbita maxima (Rimu)cmacpeB656
Cp4.1LG10g11580Cucurbita maxima (Rimu)cmacpeB863
Cp4.1LG10g11580Cucurbita moschata (Rifu)cmocpeB606
Cp4.1LG10g11580Cucurbita moschata (Rifu)cmocpeB803
Cp4.1LG10g11580Wild cucumber (PI 183967)cpecpiB069
Cp4.1LG10g11580Cucumber (Chinese Long) v2cpecuB074
Cp4.1LG10g11580Bottle gourd (USVL1VR-Ls)cpelsiB055
Cp4.1LG10g11580Bottle gourd (USVL1VR-Ls)cpelsiB051
Cp4.1LG10g11580Watermelon (Charleston Gray)cpewcgB073
Cp4.1LG10g11580Watermelon (97103) v1cpewmB085
Cp4.1LG10g11580Watermelon (97103) v1cpewmB087
Cp4.1LG10g11580Melon (DHL92) v3.5.1cpemeB064
Cp4.1LG10g11580Cucumber (Gy14) v2cgybcpeB467
Cp4.1LG10g11580Cucumber (Gy14) v2cgybcpeB475
Cp4.1LG10g11580Melon (DHL92) v3.6.1cpemedB094
Cp4.1LG10g11580Silver-seed gourdcarcpeB0276
Cp4.1LG10g11580Silver-seed gourdcarcpeB0398
Cp4.1LG10g11580Cucumber (Chinese Long) v3cpecucB0079
Cp4.1LG10g11580Cucumber (Chinese Long) v3cpecucB0086
Cp4.1LG10g11580Wax gourdcpewgoB0088
Cp4.1LG10g11580Wax gourdcpewgoB0093