ClCG04G000130 (gene) Watermelon (Charleston Gray)

Overview
NameClCG04G000130
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionExosome complex exonuclease rrp43, putative
LocationCG_Chr04 : 373245 .. 376628 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GCGTGTGAGTGGGAAAAAGAAATTGTGAAACTTCAGTCTTGCTTCACGAACGCCGCGCGAACAGACATCCATTTCGCCACTCTCTCTCTCTCTCACGCGAACTCTCCCTCGCCGCCATCCGCTGCTCGCAGCCACTCTGCCTCCGCCGCCAGCCGCTCCGCCTCCGCCCGCCGTCGACCGCAGGTGAGAGCTTCTCTACCGTCTCTCTCTCTCTCTCTCTCTCTCTAAGATCTATTCTTTGCACAATGTTGCCTCCGTTGCACCGCCACCAGCCGAGCGCCCTGCTCCACCCTGTTTGGAATGGATTTTTTTTCTTTTTCTTTTTCTTTTTGTTTTTTTTTTTTAAAAGCAAGATTTCCAATCACAACTGGTTTCCAATTTCTGTAAAACAGACAAGATTACAAACAATGGGACTGCCAAATGCTGCTTCTGGGGACTTGTCGTCAGAAATGGAAGTTGATGCTTTTAGACGACTCTTTCCAATTCAGTTTTATGAGCGCCATCTTGCGGAATCAATACGTCCTGATGGAAGAGCACTTGGAAAAGCTAGAGACACAACCATTGCCCTTGGTTTGTTTTAGGCTTTGATTTTCAGTAATTTGCCATTTCTTACCATTTGCAGCTTGTGTTTATCATCACGAGTTTACTTGATTAATTTTGACTCTCAAAAACTGAATTTGGGTATCTTCTATTCATTTAGGACCGGTATCATCTGCAAATGGGTCAGCCCTGGCTAAGATTGGTTCGACGGTGAGTGCCTCCACACTTAACCTTATCATATGTGCTAGGGTTTTGTGACGGTTTGTTCTTAATTTGATATAGTGCAGACAATGTTGGCTGCTATTAAAATGGAAGTCATGACGCCTTCTATAGAATCACCAGATGAGGGTTGCATAGGTTGGCCATTGTCAATTGCTAAATATTTTTGGTCATTGTTCATCATAATCTTTATGGTAACATCCTTTACATTTGAGTGATATCGAGTCTATCTTTTTCCAGCTGTCGATTTCCACATGCCTCCAATATGCTCTCCAATTGTTAGGCCTGGGAGACCAGCGGAAGCAGCACCTGTGATTTCAAAGCAGTTATCTGACACCATTTCGAGGTACCATTTCACATTTTTTGCAATTTTTACTTTCACAGATTGCAATTTGCAGCTGATATTCTTCGGTTAAGTGTGGATGGCAATCAATCTTTAGAAAATATTTTGAATGCTACTGAAGTGTTTGAGATGGCATTCCCACTTTAAATTTAGAGGAAAGAGAGTTTTCGTATGAACAATCTCAATAATCATTTTAAACACAACAAGAAGATTTATCCAAAGAACCTTGGCAAATCTTGAGGCAGTTTCAAATATGATCTTTGCTACCGGAGTATAGGTACTGAAGATCCCAACCATATCTTTCTTTACTGCTACTCGGGAGATTTGGCAATTGGTGTGTTGAAAGAGTTTGAACTATTTTGGATTTTTTCTAAAGTGTCCTCTCCTACTTTTTGTCAACTGCTTTATGGAGCTCCTTTCAAGAGGCAAGACAAAAACTCTCATGGGGGTGGTGAAAGCTTGTAGAAAAATAGTCTTGAAAGAAACAAAAGAGGCCTTTTGGAGGCAAAAGAGAAAATATGAGTGGACTGTGAGAGATTTTGTAGGCAAAGAAGAAATCTTTGGGAGGATTGCTGGATGGGGATGAGCTTCTTTGTACCTTGTTTATGCGGATGTATCACTTCTCGAACAAGAAGTTACATCCAGTTGTCTCTGTGTTGCCTTCCTCAAATCCTTCTTCCTCCATCTCTTTGGGTTTCCAAAGACCTTTGACAAATTGAGAGGTAATGGAAATGACAAATCTTCTTTCCCTTCAAGATAAATTTGTGGTTCCGTGGGAGAAGGGATGTTGAGTTTTGGGCCCAAAATCCTTCTAGGAACATCTCTTGTCATTCCCTCTTTCATCTTTTCTCTTTCCTTTCTCCCTCTATTGCCGACCCTGTCCTTTTACTCTCTTTGGAAGGTTAAAATCCCAAAGAAGGTTATGATTTTTGTGTGGGAGATTTTACATGGGAGCGTCAATACCATGGATTGCATTGAAAGACACTCTTCCTTAGTTTTGTTACTGCAATAGTGCATTTTCTGTAGGAGTCACAAGGAGGATTTTGACCATCTTTTTTGGGGTTGTTAGTTTGCTCACTTCATTGGAGTCACTGGTTGAGATTGTTTGTGCACTTTGAGGTTTGTTGGGTGTGGCATAGAGACGGCTGTACTCAGGAGGAAGTGCTCTCGACCCTCCCTTAAAGGAGAAGGTTTCAGCATTGTGGCAAGGGAACCTATTTACTATCCTGTGGGGGATTTGGAGGGAGAGGAATAATAGAGTATATAGAGGTTGAAAGATCGAGTGAGGATGTTCGGGAGTTGGCTTGATTTAACACTTTCTAATGGGTGTCGGTTACTAAACTTTTTTGTAATTGTGAGCTTAGTCTTGTTCTTTTGGGTTGAAATCCGTTTTAGTAGCTTGCATCGGGCCCCTTCCTTTTTTGTTGGGCTTATTTCTTTTGTATGATCTTGTATATTCGCTCATCGTTTGAATGAAAATGCGGTTTCATTTAAAAAAATTTTGTGGGAGGTTTTCAATGTTAATGCTTCTGGTACTCTGGATCAAAACTCTTTGATTGCTATGTTATTCTCCTGTTGGGTAGAACTATTGTTGGGATTTTCTGTAACCTCTTTTTGTTGTAGTTTGGGAAATGTTTGTTCGATAATGATAAGTTCTCTATCTTAAATTTTCTTAAAAAAACTAAACTATTGCAAACTATTCTATTTGCAATATTGTGTTTCTCATTACTTCATAAGCAAAGTAAATCTGGTAAAAGGAATGTGATACACTTTTCTGGTTTCTGATCTCTTATGTATGGTCAATTTCCTTTCAATCTAACTGACTAATCAAGATATTGATGATGTGAATTCTTCAGTTCTGGGATGATTGATCTGAGAGAACTATCTCTTGTTAAAGGAAAAGCTGCTTGGATGGCTTACTTGGTAAATTCATGCATTGTCAATATATTTATTTTTATTCTAGAAGTATCTTGGTGTTTGAAGTAAGGTTCCTTTACCGATGTATCTTTATACTTTGTTTCTAAAATTTTTTCTCGCAGCATCCTTACTCGTACTGGACATTCTCTCTATAGCTTGATTTTTGGCCAGAATGCAGATTTATTATTGCAGTTAATTATTTTAGATGAGATAGCAACTTGACATGTGTTCCACAGGATATTTACTGTTTGGATGCTGATGGATCTCTTTTTGATGCTGCACTTCTTTCTGCAGCTGCTGCATTTTCTCACTGTGAGGTTTCAGGCTCTCAACTTGTTCCCAACTTGATATATTTCTGTATGATT

mRNA sequence

GCGTGTGAGTGGGAAAAAGAAATTGTGAAACTTCAGTCTTGCTTCACGAACGCCGCGCGAACAGACATCCATTTCGCCACTCTCTCTCTCTCTCACGCGAACTCTCCCTCGCCGCCATCCGCTGCTCGCAGCCACTCTGCCTCCGCCGCCAGCCGCTCCGCCTCCGCCCGCCGTCGACCGCAGACAAGATTACAAACAATGGGACTGCCAAATGCTGCTTCTGGGGACTTGTCGTCAGAAATGGAAGTTGATGCTTTTAGACGACTCTTTCCAATTCAGTTTTATGAGCGCCATCTTGCGGAATCAATACGTCCTGATGGAAGAGCACTTGGAAAAGCTAGAGACACAACCATTGCCCTTGGACCGGTATCATCTGCAAATGGGTCAGCCCTGGCTAAGATTGGTTCGACGACAATGTTGGCTGCTATTAAAATGGAAGTCATGACGCCTTCTATAGAATCACCAGATGAGGGTTGCATAGCTGTCGATTTCCACATGCCTCCAATATGCTCTCCAATTGTTAGGCCTGGGAGACCAGCGGAAGCAGCACCTGTGATTTCAAAGCAGTTATCTGACACCATTTCGAGTTCTGGGATGATTGATCTGAGAGAACTATCTCTTGTTAAAGGAAAAGCTGCTTGGATGGCTTACTTGGATATTTACTGTTTGGATGCTGATGGATCTCTTTTTGATGCTGCACTTCTTTCTGCAGCTGCTGCATTTTCTCACTGTGAGGTTTCAGGCTCTCAACTTGTTCCCAACTTGATATATTTCTGTATGATT

Coding sequence (CDS)

GCGTGTGAGTGGGAAAAAGAAATTGTGAAACTTCAGTCTTGCTTCACGAACGCCGCGCGAACAGACATCCATTTCGCCACTCTCTCTCTCTCTCACGCGAACTCTCCCTCGCCGCCATCCGCTGCTCGCAGCCACTCTGCCTCCGCCGCCAGCCGCTCCGCCTCCGCCCGCCGTCGACCGCAGACAAGATTACAAACAATGGGACTGCCAAATGCTGCTTCTGGGGACTTGTCGTCAGAAATGGAAGTTGATGCTTTTAGACGACTCTTTCCAATTCAGTTTTATGAGCGCCATCTTGCGGAATCAATACGTCCTGATGGAAGAGCACTTGGAAAAGCTAGAGACACAACCATTGCCCTTGGACCGGTATCATCTGCAAATGGGTCAGCCCTGGCTAAGATTGGTTCGACGACAATGTTGGCTGCTATTAAAATGGAAGTCATGACGCCTTCTATAGAATCACCAGATGAGGGTTGCATAGCTGTCGATTTCCACATGCCTCCAATATGCTCTCCAATTGTTAGGCCTGGGAGACCAGCGGAAGCAGCACCTGTGATTTCAAAGCAGTTATCTGACACCATTTCGAGTTCTGGGATGATTGATCTGAGAGAACTATCTCTTGTTAAAGGAAAAGCTGCTTGGATGGCTTACTTGGATATTTACTGTTTGGATGCTGATGGATCTCTTTTTGATGCTGCACTTCTTTCTGCAGCTGCTGCATTTTCTCACTGTGAGGTTTCAGGCTCTCAACTTGTTCCCAACTTGATATATTTCTGTATGATT

Protein sequence

ACEWEKEIVKLQSCFTNAARTDIHFATLSLSHANSPSPPSAARSHSASAASRSASARRRPQTRLQTMGLPNAASGDLSSEMEVDAFRRLFPIQFYERHLAESIRPDGRALGKARDTTIALGPVSSANGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHCEVSGSQLVPNLIYFCMI
Homology
[Close]
BLAST of ClCG04G000130 vs. Swiss-Prot
Match: EXOS8_HUMAN (Exosome complex component RRP43 OS=Homo sapiens GN=EXOSC8 PE=1 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 8.5e-33
Identity = 64/161 (39.75%), Postives = 101/161 (62.73%), Query Frame = 1 

Query: 86  FRRLFPIQFYERHLAESIRPDGRALGKARDTTIALGPVSSANGSALAKIGSTTMLAAIKM 145
           F+ + P+++Y R L E+ RPDGR LG+ R TT+ +G +S+A+GSAL K+G+TT++  +K 
Sbjct: 5   FKTVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKA 64

Query: 146 EVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLREL 205
           E   PS ++PD+G +  +  +PP+CS   R G P E A V S+ ++D I +S +I   +L
Sbjct: 65  EFAAPSTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDL 124

Query: 206 SLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHCEV 247
            +  GK  W+ Y D+ CLD DG++ DA   +  AA  + ++
Sbjct: 125 CISPGKLVWVLYCDLICLDYDGNILDACTFALLAALKNVQL 165

[Close]
BLAST of ClCG04G000130 vs. Swiss-Prot
Match: EXOS8_MOUSE (Exosome complex component RRP43 OS=Mus musculus GN=Exosc8 PE=1 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.1e-32
Identity = 63/161 (39.13%), Postives = 101/161 (62.73%), Query Frame = 1 

Query: 86  FRRLFPIQFYERHLAESIRPDGRALGKARDTTIALGPVSSANGSALAKIGSTTMLAAIKM 145
           F+ + P+++Y R L E+ RPDGR LG+ R TT+ +G +S+A+GSAL K+G+TT++  +K 
Sbjct: 5   FKTVEPLEYYRRFLKENCRPDGRELGEFRATTVNIGSISTADGSALVKLGNTTVICGVKA 64

Query: 146 EVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLREL 205
           E   P +++PD G +  +  +PP+CS   R G P E A V S+ ++D + +S +I   +L
Sbjct: 65  EFAAPPVDAPDRGYVVPNVDLPPLCSSRFRTGPPGEEAQVTSQFIADVVDNSQVIKKEDL 124

Query: 206 SLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHCEV 247
            +  GK AW+ Y D+ CLD DG++ DA   +  AA  + ++
Sbjct: 125 CISPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQL 165

[Close]
BLAST of ClCG04G000130 vs. Swiss-Prot
Match: EXOS8_BOVIN (Exosome complex component RRP43 OS=Bos taurus GN=EXOSC8 PE=2 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.4e-30
Identity = 62/161 (38.51%), Postives = 99/161 (61.49%), Query Frame = 1 

Query: 86  FRRLFPIQFYERHLAESIRPDGRALGKARDTTIALGPVSSANGSALAKIGSTTMLAAIKM 145
           F+ + P+++Y R L E+ RPDGR LG+ R TT+ +G + +A+GSAL K+G+TT++  IK 
Sbjct: 5   FKTVEPLEYYRRFLKENCRPDGRELGEFRTTTVNVGSIGTADGSALVKLGNTTVICGIKA 64

Query: 146 EVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLREL 205
           E   P  ++PD+G +  +  + P+CS   R G P E A V S+ ++D I +S +I   +L
Sbjct: 65  EFGAPPTDAPDKGYVVPNVDLSPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDL 124

Query: 206 SLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHCEV 247
            +  GK AW+ Y D+ CL+ DG++ DA   +  AA  + ++
Sbjct: 125 CISSGKLAWVLYCDLICLNHDGNILDACTFALLAALKNVQL 165

[Close]
BLAST of ClCG04G000130 vs. Swiss-Prot
Match: RRP43_SCHPO (Exosome complex component rrp43 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rrp43 PE=3 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 5.9e-26
Identity = 58/155 (37.42%), Postives = 91/155 (58.71%), Query Frame = 1 

Query: 86  FRRLFPIQFYERHLAESIRPDGRALGKARDTTIALGPVSSANGSALAKIGSTTMLAAIKM 145
           F+++ P Q+    L + +R DGR++ + R+  I    +S+ANGSA+ + G    +  IK 
Sbjct: 17  FKKITPEQYLSHLLNQDVRSDGRSVSEFREIVINDNCISTANGSAIIRAGENVFVCGIKA 76

Query: 146 EVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLREL 205
           E+  P   SP+EG I  +  + P+CS   +PG P++ A V+S++L  T+  S +I+L+ L
Sbjct: 77  EIAEPFENSPNEGWIVPNLELSPLCSSKFKPGPPSDLAQVVSQELHQTLQQSNLINLQSL 136

Query: 206 SLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAA 241
            + + KAAW+ Y DI CL+ DGS FD A  +  AA
Sbjct: 137 CIFEKKAAWVLYADIICLNYDGSAFDYAWAALFAA 171

[Close]
BLAST of ClCG04G000130 vs. Swiss-Prot
Match: RRP42_METKA (Exosome complex component Rrp42 OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=rrp42 PE=3 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 5.0e-25
Identity = 58/149 (38.93%), Postives = 91/149 (61.07%), Query Frame = 1 

Query: 104 RPDGRALGKARDTTIALGPVSSANGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAVD 163
           R DGR   + R   +  G +S ANGSAL ++G+T ++  +K+EV  P  +SP+EG +AV+
Sbjct: 23  RIDGRDFEEFRPIEVRAGVISKANGSALVRLGNTQLVVGVKLEVGRPYPDSPNEGALAVN 82

Query: 164 FHMPPICSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCL 223
             + P+  P   PG P E A  +S+ +   I  S MIDL EL + +G+  W+ ++DI+ L
Sbjct: 83  AELVPLADPSFEPGPPDENAIELSRVVDRGIRESEMIDLEELCIEEGEHCWVTFVDIHVL 142

Query: 224 DADGSLFDAALLSAAAAFSHCEVSGSQLV 253
           D DG+LFDA+++ + +A S  EV  +++V
Sbjct: 143 DHDGNLFDASMIGSVSALSITEVPKAEVV 171

[Close]
BLAST of ClCG04G000130 vs. TrEMBL
Match: A0A0D2QBI8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G116000 PE=4 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 3.4e-81
Identity = 153/180 (85.00%), Postives = 170/180 (94.44%), Query Frame = 1 

Query: 67  MGLPNAASGDLSSEMEVDAFRRLFPIQFYERHLAESIRPDGRALGKARDTTIALGPVSSA 126
           MGLPNA SGDLS+E+EVDAFRRLFP++FYE+HL ESIRPD R LG+AR+TTIALG V+SA
Sbjct: 1   MGLPNA-SGDLSTEVEVDAFRRLFPLRFYEKHLLESIRPDARPLGRARETTIALGAVASA 60

Query: 127 NGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI 186
           NGSALAKIGSTTMLAAIKMEVMTPS+E+PDEGCIA+DFHMPPICSPIVRPGRPAEAAPV+
Sbjct: 61  NGSALAKIGSTTMLAAIKMEVMTPSLETPDEGCIAIDFHMPPICSPIVRPGRPAEAAPVV 120

Query: 187 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHCEV 246
           +KQLSDTI SSGMI+L+ELSLV GKAAWMAYLDIYCLDADG+LFD ALLSA AAFSH E+
Sbjct: 121 AKQLSDTILSSGMINLKELSLVSGKAAWMAYLDIYCLDADGALFDTALLSAVAAFSHLEI 179

[Close]
BLAST of ClCG04G000130 vs. TrEMBL
Match: A0A0D2Q4I8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G116000 PE=4 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 3.4e-81
Identity = 153/180 (85.00%), Postives = 170/180 (94.44%), Query Frame = 1 

Query: 67  MGLPNAASGDLSSEMEVDAFRRLFPIQFYERHLAESIRPDGRALGKARDTTIALGPVSSA 126
           MGLPNA SGDLS+E+EVDAFRRLFP++FYE+HL ESIRPD R LG+AR+TTIALG V+SA
Sbjct: 1   MGLPNA-SGDLSTEVEVDAFRRLFPLRFYEKHLLESIRPDARPLGRARETTIALGAVASA 60

Query: 127 NGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI 186
           NGSALAKIGSTTMLAAIKMEVMTPS+E+PDEGCIA+DFHMPPICSPIVRPGRPAEAAPV+
Sbjct: 61  NGSALAKIGSTTMLAAIKMEVMTPSLETPDEGCIAIDFHMPPICSPIVRPGRPAEAAPVV 120

Query: 187 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHCEV 246
           +KQLSDTI SSGMI+L+ELSLV GKAAWMAYLDIYCLDADG+LFD ALLSA AAFSH E+
Sbjct: 121 AKQLSDTILSSGMINLKELSLVSGKAAWMAYLDIYCLDADGALFDTALLSAVAAFSHLEI 179

[Close]
BLAST of ClCG04G000130 vs. TrEMBL
Match: A0A061EX61_THECC (3'-5'-exoribonuclease family protein OS=Theobroma cacao GN=TCM_024636 PE=4 SV=1)

HSP 1 Score: 309.3 bits (791), Expect = 4.5e-81
Identity = 153/180 (85.00%), Postives = 168/180 (93.33%), Query Frame = 1 

Query: 67  MGLPNAASGDLSSEMEVDAFRRLFPIQFYERHLAESIRPDGRALGKARDTTIALGPVSSA 126
           MGLPNA SGDLS+E+EVDAFRRLFP++FYE+HL+ESIRPD R LG+ARDTTIALG V+SA
Sbjct: 1   MGLPNA-SGDLSTEVEVDAFRRLFPLRFYEKHLSESIRPDARPLGRARDTTIALGAVASA 60

Query: 127 NGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI 186
           NGSALAKIGSTTMLAAIKMEVMTPS E+PDEGC+A+DFHMPPICSPIVRPGRPAEAAPV+
Sbjct: 61  NGSALAKIGSTTMLAAIKMEVMTPSTETPDEGCVAIDFHMPPICSPIVRPGRPAEAAPVV 120

Query: 187 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHCEV 246
           SKQLSDTI SSGMI L+EL LV GKAAWMAYLDIYCLDADG+LFD ALLSA AAFSH E+
Sbjct: 121 SKQLSDTILSSGMISLKELCLVSGKAAWMAYLDIYCLDADGALFDTALLSAVAAFSHLEI 179

[Close]
BLAST of ClCG04G000130 vs. TrEMBL
Match: A0A067JQ87_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21085 PE=4 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 3.8e-80
Identity = 151/180 (83.89%), Postives = 167/180 (92.78%), Query Frame = 1 

Query: 67  MGLPNAASGDLSSEMEVDAFRRLFPIQFYERHLAESIRPDGRALGKARDTTIALGPVSSA 126
           MGLPN  SGDLSSEMEVDAFRRLFP+++YERHLAESIRPD R LG ARDTT+ALG V+SA
Sbjct: 1   MGLPNV-SGDLSSEMEVDAFRRLFPLRYYERHLAESIRPDARPLGSARDTTLALGAVASA 60

Query: 127 NGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI 186
           +GSALAKIGSTTMLAAIKMEVMTPS +SPDEGCIA+DFHMPPICSP+VRPGRPAEAAPV+
Sbjct: 61  DGSALAKIGSTTMLAAIKMEVMTPSTDSPDEGCIAIDFHMPPICSPLVRPGRPAEAAPVV 120

Query: 187 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHCEV 246
           +KQLSDTI SSGMI+L+ELSLV GKAAWMAYLDIYCLDADG+LFDAAL S  AAFSH ++
Sbjct: 121 AKQLSDTILSSGMINLKELSLVSGKAAWMAYLDIYCLDADGALFDAALFSVVAAFSHLQI 179

[Close]
BLAST of ClCG04G000130 vs. TrEMBL
Match: U5G927_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s04970g PE=4 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 1.1e-79
Identity = 152/180 (84.44%), Postives = 170/180 (94.44%), Query Frame = 1 

Query: 67  MGLPNAASGDLSSEMEVDAFRRLFPIQFYERHLAESIRPDGRALGKARDTTIALGPVSSA 126
           MG+P+A SGDLSSEMEVDAFRRLFP++++ERHL+ESIRPD R LG+ARDTT+ALG V+SA
Sbjct: 1   MGVPDA-SGDLSSEMEVDAFRRLFPLRYFERHLSESIRPDARPLGRARDTTLALGAVASA 60

Query: 127 NGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI 186
           +GSALAKIGSTTMLAAIKMEVMTPS ESP+EG IA+DFHMPPICSPIVRPGRPAEAAPVI
Sbjct: 61  HGSALAKIGSTTMLAAIKMEVMTPSTESPEEGSIAIDFHMPPICSPIVRPGRPAEAAPVI 120

Query: 187 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHCEV 246
           SKQLSDTISSSGMI+L+ELSLV GKAAWMAYLDIYCLDADG+LFDAALLSA  AFSH ++
Sbjct: 121 SKQLSDTISSSGMINLKELSLVSGKAAWMAYLDIYCLDADGALFDAALLSAVGAFSHLQI 179

[Close]
BLAST of ClCG04G000130 vs. TAIR10
Match: AT1G60080.1 (AT1G60080.1 3'-5'-exoribonuclease family protein)

HSP 1 Score: 291.6 bits (745), Expect = 4.9e-79
Identity = 143/180 (79.44%), Postives = 164/180 (91.11%), Query Frame = 1 

Query: 67  MGLPNAASGDLSSEMEVDAFRRLFPIQFYERHLAESIRPDGRALGKARDTTIALGPVSSA 126
           MG+P+AA  DLS+EMEVDAFRR+FP++F+ERHL+ES+RPDGR LGKARDT + LG VS+A
Sbjct: 1   MGIPDAAQ-DLSTEMEVDAFRRIFPLRFFERHLSESLRPDGRQLGKARDTIVNLGLVSTA 60

Query: 127 NGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI 186
           +GSALAKIGSTTMLAAI+MEVMTPS +SPDEGCIA++FHMPPICSP VRPGRPAEAAPVI
Sbjct: 61  DGSALAKIGSTTMLAAIRMEVMTPSTDSPDEGCIAIEFHMPPICSPTVRPGRPAEAAPVI 120

Query: 187 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHCEV 246
           SK+LSDTI SSGMIDL+EL LV GKAAWM YLDIYCLDADG+LFDAALL+A AAFS+ ++
Sbjct: 121 SKRLSDTILSSGMIDLKELCLVSGKAAWMGYLDIYCLDADGALFDAALLAAVAAFSNLQI 179

[Close]
BLAST of ClCG04G000130 vs. TAIR10
Match: AT3G60500.1 (AT3G60500.1 3'-5'-exoribonuclease family protein)

HSP 1 Score: 83.2 bits (204), Expect = 2.6e-16
Identity = 45/148 (30.41%), Postives = 74/148 (50.00%), Query Frame = 1 

Query: 93  QFYERHLAESIRPDGRALGKARDTTIALGPVSSANGSALAKIGSTTMLAAIKMEVMTPSI 152
           +F E  L   +R DGR L   R  TI  G      GS+  ++G T ++  +  +++ P  
Sbjct: 17  KFVETALQSELRVDGRGLYDYRKLTIKFG---KEYGSSEVQLGQTHVMGFVTAQLVQPYK 76

Query: 153 ESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLRELSLVKGKA 212
           + P+EG +++     P+  P   PGRP E+A  + + +   +  S  +D   L ++ GK 
Sbjct: 77  DRPNEGSLSIFTEFSPMADPSFEPGRPGESAVELGRIIDRGLRESRAVDTESLCVLAGKM 136

Query: 213 AWMAYLDIYCLDADGSLFDAALLSAAAA 241
            W   +D++ LD  G+L DAA ++A AA
Sbjct: 137 VWSVRIDLHILDNGGNLVDAANIAALAA 161

[Close]
BLAST of ClCG04G000130 vs. TAIR10
Match: AT3G07750.1 (AT3G07750.1 3'-5'-exoribonuclease family protein)

HSP 1 Score: 74.7 bits (182), Expect = 9.4e-14
Identity = 50/158 (31.65%), Postives = 77/158 (48.73%), Query Frame = 1 

Query: 94  FYERHLAESIRPDGRALGKARDTTIALGPVSSANGSALAKIGSTTMLAAIKMEVMTPSIE 153
           F +  +A+ +R DGR     R   +  G +  ANGSA  +IG T ++A++K E+  PS  
Sbjct: 10  FIKGGIAQDLRTDGRKRLTYRPIYVETGVIPQANGSARVRIGGTDVIASVKAEIGRPSSL 69

Query: 154 SPDEGCIAVDFHMPPICSPIV--RPGR--PAEAAPVISKQLSDTISSSGM-IDLRELSLV 213
            PD+G +AV     P   P    R G    +E A  + + L    S +G  I+L  L + 
Sbjct: 70  QPDKGKVAVFIDCSPTAEPTFGGRGGEELSSELALALQRCLLGGKSGAGAGINLSSLLIK 129

Query: 214 KGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHCEV 247
           +GK  W  Y+D   + +DG+L DA   +  AA ++  +
Sbjct: 130 EGKVCWDLYIDGLVISSDGNLLDALGAAIKAALTNTAI 167

[Close]
BLAST of ClCG04G000130 vs. NCBI nr
Match: gi|659121681|ref|XP_008460772.1| (PREDICTED: exosome complex component RRP43 isoform X1 [Cucumis melo])

HSP 1 Score: 350.5 bits (898), Expect = 2.5e-93
Identity = 175/183 (95.63%), Postives = 182/183 (99.45%), Query Frame = 1 

Query: 64  LQTMGLPNAASGDLSSEMEVDAFRRLFPIQFYERHLAESIRPDGRALGKARDTTIALGPV 123
           +QTMGLPNAASGDLSS+MEVDAFRRLFPIQFYERHLAESIRPDGRALGKARDTTIALGPV
Sbjct: 10  VQTMGLPNAASGDLSSQMEVDAFRRLFPIQFYERHLAESIRPDGRALGKARDTTIALGPV 69

Query: 124 SSANGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAA 183
           SSANGSALAKIGSTTMLAAIKMEVMTPS+ESPDEGCIA+DFHMPP+CSPIVRPGRPAEAA
Sbjct: 70  SSANGSALAKIGSTTMLAAIKMEVMTPSVESPDEGCIALDFHMPPVCSPIVRPGRPAEAA 129

Query: 184 PVISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSH 243
           PVISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSH
Sbjct: 130 PVISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSH 189

Query: 244 CEV 247
            ++
Sbjct: 190 LQI 192

[Close]
BLAST of ClCG04G000130 vs. NCBI nr
Match: gi|659121683|ref|XP_008460773.1| (PREDICTED: exosome complex component RRP43 isoform X2 [Cucumis melo])

HSP 1 Score: 346.3 bits (887), Expect = 4.7e-92
Identity = 173/180 (96.11%), Postives = 179/180 (99.44%), Query Frame = 1 

Query: 67  MGLPNAASGDLSSEMEVDAFRRLFPIQFYERHLAESIRPDGRALGKARDTTIALGPVSSA 126
           MGLPNAASGDLSS+MEVDAFRRLFPIQFYERHLAESIRPDGRALGKARDTTIALGPVSSA
Sbjct: 1   MGLPNAASGDLSSQMEVDAFRRLFPIQFYERHLAESIRPDGRALGKARDTTIALGPVSSA 60

Query: 127 NGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI 186
           NGSALAKIGSTTMLAAIKMEVMTPS+ESPDEGCIA+DFHMPP+CSPIVRPGRPAEAAPVI
Sbjct: 61  NGSALAKIGSTTMLAAIKMEVMTPSVESPDEGCIALDFHMPPVCSPIVRPGRPAEAAPVI 120

Query: 187 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHCEV 246
           SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSH ++
Sbjct: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI 180

[Close]
BLAST of ClCG04G000130 vs. NCBI nr
Match: gi|449463354|ref|XP_004149399.1| (PREDICTED: exosome complex component RRP43 [Cucumis sativus])

HSP 1 Score: 343.6 bits (880), Expect = 3.1e-91
Identity = 171/180 (95.00%), Postives = 178/180 (98.89%), Query Frame = 1 

Query: 67  MGLPNAASGDLSSEMEVDAFRRLFPIQFYERHLAESIRPDGRALGKARDTTIALGPVSSA 126
           MGLPNAASGDLSS+MEVDAFRRLFPIQFYERHL ESIRPDGR+LGKARDTTIALGPVSSA
Sbjct: 1   MGLPNAASGDLSSQMEVDAFRRLFPIQFYERHLTESIRPDGRSLGKARDTTIALGPVSSA 60

Query: 127 NGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI 186
           NGSALAKIGSTTMLAAIKMEVMTPS+ESPDEGCIA+DFHMPP+CSPIVRPGRPAEAAPVI
Sbjct: 61  NGSALAKIGSTTMLAAIKMEVMTPSVESPDEGCIALDFHMPPVCSPIVRPGRPAEAAPVI 120

Query: 187 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHCEV 246
           SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSH ++
Sbjct: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI 180

[Close]
BLAST of ClCG04G000130 vs. NCBI nr
Match: gi|763746817|gb|KJB14256.1| (hypothetical protein B456_002G116000 [Gossypium raimondii])

HSP 1 Score: 309.7 bits (792), Expect = 4.9e-81
Identity = 153/180 (85.00%), Postives = 170/180 (94.44%), Query Frame = 1 

Query: 67  MGLPNAASGDLSSEMEVDAFRRLFPIQFYERHLAESIRPDGRALGKARDTTIALGPVSSA 126
           MGLPNA SGDLS+E+EVDAFRRLFP++FYE+HL ESIRPD R LG+AR+TTIALG V+SA
Sbjct: 1   MGLPNA-SGDLSTEVEVDAFRRLFPLRFYEKHLLESIRPDARPLGRARETTIALGAVASA 60

Query: 127 NGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI 186
           NGSALAKIGSTTMLAAIKMEVMTPS+E+PDEGCIA+DFHMPPICSPIVRPGRPAEAAPV+
Sbjct: 61  NGSALAKIGSTTMLAAIKMEVMTPSLETPDEGCIAIDFHMPPICSPIVRPGRPAEAAPVV 120

Query: 187 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHCEV 246
           +KQLSDTI SSGMI+L+ELSLV GKAAWMAYLDIYCLDADG+LFD ALLSA AAFSH E+
Sbjct: 121 AKQLSDTILSSGMINLKELSLVSGKAAWMAYLDIYCLDADGALFDTALLSAVAAFSHLEI 179

[Close]
BLAST of ClCG04G000130 vs. NCBI nr
Match: gi|823132872|ref|XP_012464639.1| (PREDICTED: exosome complex component RRP43-like [Gossypium raimondii])

HSP 1 Score: 309.7 bits (792), Expect = 4.9e-81
Identity = 153/180 (85.00%), Postives = 170/180 (94.44%), Query Frame = 1 

Query: 67  MGLPNAASGDLSSEMEVDAFRRLFPIQFYERHLAESIRPDGRALGKARDTTIALGPVSSA 126
           MGLPNA SGDLS+E+EVDAFRRLFP++FYE+HL ESIRPD R LG+AR+TTIALG V+SA
Sbjct: 1   MGLPNA-SGDLSTEVEVDAFRRLFPLRFYEKHLLESIRPDARPLGRARETTIALGAVASA 60

Query: 127 NGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI 186
           NGSALAKIGSTTMLAAIKMEVMTPS+E+PDEGCIA+DFHMPPICSPIVRPGRPAEAAPV+
Sbjct: 61  NGSALAKIGSTTMLAAIKMEVMTPSLETPDEGCIAIDFHMPPICSPIVRPGRPAEAAPVV 120

Query: 187 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHCEV 246
           +KQLSDTI SSGMI+L+ELSLV GKAAWMAYLDIYCLDADG+LFD ALLSA AAFSH E+
Sbjct: 121 AKQLSDTILSSGMINLKELSLVSGKAAWMAYLDIYCLDADGALFDTALLSAVAAFSHLEI 179

The following BLAST results are available for this feature:
BLAST of ClCG04G000130 vs. Swiss-Prot
Match NameE-valueIdentityDescription
EXOS8_HUMAN8.5e-3339.75Exosome complex component RRP43 OS=Homo sapiens GN=EXOSC8 PE=1 SV=1[more]
EXOS8_MOUSE1.1e-3239.13Exosome complex component RRP43 OS=Mus musculus GN=Exosc8 PE=1 SV=1[more]
EXOS8_BOVIN1.4e-3038.51Exosome complex component RRP43 OS=Bos taurus GN=EXOSC8 PE=2 SV=1[more]
RRP43_SCHPO5.9e-2637.42Exosome complex component rrp43 OS=Schizosaccharomyces pombe (strain 972 / ATCC ... [more]
RRP42_METKA5.0e-2538.93Exosome complex component Rrp42 OS=Methanopyrus kandleri (strain AV19 / DSM 6324... [more]
BLAST of ClCG04G000130 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0D2QBI8_GOSRA3.4e-8185.00Uncharacterized protein OS=Gossypium raimondii GN=B456_002G116000 PE=4 SV=1[more]
A0A0D2Q4I8_GOSRA3.4e-8185.00Uncharacterized protein OS=Gossypium raimondii GN=B456_002G116000 PE=4 SV=1[more]
A0A061EX61_THECC4.5e-8185.003'-5'-exoribonuclease family protein OS=Theobroma cacao GN=TCM_024636 PE=4 SV=1[more]
A0A067JQ87_JATCU3.8e-8083.89Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21085 PE=4 SV=1[more]
U5G927_POPTR1.1e-7984.44Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s04970g PE=4 SV=1[more]
BLAST of ClCG04G000130 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G60080.14.9e-7979.44 3'-5'-exoribonuclease family protein[more]
AT3G60500.12.6e-1630.41 3'-5'-exoribonuclease family protein[more]
AT3G07750.19.4e-1431.65 3'-5'-exoribonuclease family protein[more]
BLAST of ClCG04G000130 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659121681|ref|XP_008460772.1|2.5e-9395.63PREDICTED: exosome complex component RRP43 isoform X1 [Cucumis melo][more]
gi|659121683|ref|XP_008460773.1|4.7e-9296.11PREDICTED: exosome complex component RRP43 isoform X2 [Cucumis melo][more]
gi|449463354|ref|XP_004149399.1|3.1e-9195.00PREDICTED: exosome complex component RRP43 [Cucumis sativus][more]
gi|763746817|gb|KJB14256.1|4.9e-8185.00hypothetical protein B456_002G116000 [Gossypium raimondii][more]
gi|823132872|ref|XP_012464639.1|4.9e-8185.00PREDICTED: exosome complex component RRP43-like [Gossypium raimondii][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001247ExoRNase_PH_dom1
IPR020568Ribosomal_S5_D2-typ_fold
Vocabulary: Cellular Component
TermDefinition
GO:0000178exosome (RNase complex)
Vocabulary: Biological Process
TermDefinition
GO:0006396RNA processing
GO:0006401RNA catabolic process
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
biological_process GO:0006401 RNA catabolic process
biological_process GO:0006396 RNA processing
biological_process GO:0042991 transcription factor import into nucleus
biological_process GO:0009058 biosynthetic process
cellular_component GO:0005829 cytosol
cellular_component GO:0000178 exosome (RNase complex)
molecular_function GO:0004527 exonuclease activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG04G000130.1ClCG04G000130.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001247Exoribonuclease, phosphorolytic domain 1PFAMPF01138RNase_PHcoord: 114..244
score: 2.8
IPR020568Ribosomal protein S5 domain 2-type foldunknownSSF54211Ribosomal protein S5 domain 2-likecoord: 84..246
score: 8.6
NoneNo IPR availablePANTHERPTHR11097EXOSOME COMPLEX EXONUCLEASE RIBOSOMAL RNA PROCESSING PROTEINcoord: 75..245
score: 6.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG04G000130Csa4G165870Cucumber (Chinese Long) v2cuwcgB305
ClCG04G000130Cla002765Watermelon (97103) v1wcgwmB262
ClCG04G000130Cla97C04G068560Watermelon (97103) v2wcgwmbB200
ClCG04G000130CSPI04G10580Wild cucumber (PI 183967)cpiwcgB320
ClCG04G000130Cucsa.374690Cucumber (Gy14) v1cgywcgB639
ClCG04G000130Cp4.1LG10g11580Cucurbita pepo (Zucchini)cpewcgB075
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG04G000130Bottle gourd (USVL1VR-Ls)lsiwcgB135
ClCG04G000130Cucumber (Gy14) v2cgybwcgB286
ClCG04G000130Melon (DHL92) v3.6.1medwcgB530
ClCG04G000130Silver-seed gourdcarwcgB0184
ClCG04G000130Silver-seed gourdcarwcgB0186
ClCG04G000130Cucumber (Chinese Long) v3cucwcgB322
ClCG04G000130Cucurbita maxima (Rimu)cmawcgB586
ClCG04G000130Cucurbita maxima (Rimu)cmawcgB595
ClCG04G000130Cucurbita moschata (Rifu)cmowcgB585
ClCG04G000130Cucurbita moschata (Rifu)cmowcgB595
ClCG04G000130Melon (DHL92) v3.5.1mewcgB526
ClCG04G000130Watermelon (97103) v1wcgwmB259