Cp4.1LG10g07790 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG10g07790
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Late embryogenesis abundant protein
Location	Cp4.1LG10 : 5433957 .. 5434471 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGTCGGAGCAGGAAAGATGTGAACTCGACGCCAGGGCTAGGCAAGGGGAGACTGTCGTCCCCGGTGGAACTGGGGGGAAGAGTCTGGAAGCTCAGGAGCACCTTGCAGAAGGTGTACCGACTTGTCGACTTTTATACTTCTAATTCTCTAAAAACACCTTTTAATCCTTTGAAAAGAGCACTTAGGAAGCCAGAAACTTGGGGTACGCTCAAAATATGTAGTTTTGTCTAACCAATTCTAAGCTGAACCTACTAAAATCCTCACCTCAAGCAACTAACTATGGAAACTCTTTATACTGCCTTGCAAGTACTGAACTGACTAGAGAGGTTTTGTTCGATGGTGAAATGCAGGGCGGAGCCGTGGGGGTCAGACGAGGAAGGAGCAGTTGGGACACGAAGGGTACCAAGAGATGGGCCGTAAAGGAGGGTTGAGCAACTCGGGTATGCCAGGAGGAGAGCGTGCGGCTGAGGAAGGGGTTGAAATTGACGAGTCCAAGTTCAGGGCTAAGTAA

mRNA sequence

ATGTCGTCGGAGCAGGAAAGATGTGAACTCGACGCCAGGGCTAGGCAAGGGGAGACTGTCGTCCCCGGTGGAACTGGGGGGAAGAGTCTGGAAGCTCAGGAGCACCTTGCAGAAGGGCGGAGCCGTGGGGGTCAGACGAGGAAGGAGCAGTTGGGACACGAAGGGTACCAAGAGATGGGCCGTAAAGGAGGGTTGAGCAACTCGGGTATGCCAGGAGGAGAGCGTGCGGCTGAGGAAGGGGTTGAAATTGACGAGTCCAAGTTCAGGGCTAAGTAA

Coding sequence (CDS)

ATGTCGTCGGAGCAGGAAAGATGTGAACTCGACGCCAGGGCTAGGCAAGGGGAGACTGTCGTCCCCGGTGGAACTGGGGGGAAGAGTCTGGAAGCTCAGGAGCACCTTGCAGAAGGGCGGAGCCGTGGGGGTCAGACGAGGAAGGAGCAGTTGGGACACGAAGGGTACCAAGAGATGGGCCGTAAAGGAGGGTTGAGCAACTCGGGTATGCCAGGAGGAGAGCGTGCGGCTGAGGAAGGGGTTGAAATTGACGAGTCCAAGTTCAGGGCTAAGTAA

Protein sequence

MSSEQERCELDARARQGETVVPGGTGGKSLEAQEHLAEGRSRGGQTRKEQLGHEGYQEMGRKGGLSNSGMPGGERAAEEGVEIDESKFRAK

Homology

[Close]

BLAST of Cp4.1LG10g07790 vs. Swiss-Prot
Match: EMB1_DAUCA (Protein EMB-1 OS=Daucus carota GN=EMB-1 PE=1 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 2.7e-34
Identity = 75/91 (82.42%), Postives = 84/91 (92.31%), Query Frame = 1


Query: 1  MSSEQERCELDARARQGETVVPGGTGGKSLEAQEHLAEGRSRGGQTRKEQLGHEGYQEMG 60
          M+S+QE+ ELDARARQGETVVPGGTGGKSLEAQ+HLAEGRS+GGQTRKEQLG EGY EMG
Sbjct: 1  MASQQEKKELDARARQGETVVPGGTGGKSLEAQQHLAEGRSKGGQTRKEQLGGEGYHEMG 60

Query: 61 RKGGLSNSGMPGGERAAEEGVEIDESKFRAK 92
          RKGGLSN+ M GGERA +EG++IDESKFR K
Sbjct: 61 RKGGLSNNDMSGGERAEQEGIDIDESKFRTK 91

[Close]

BLAST of Cp4.1LG10g07790 vs. Swiss-Prot
Match: EM6_ARATH (Em-like protein GEA6 OS=Arabidopsis thaliana GN=EM6 PE=2 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 2.5e-32
Identity = 72/91 (79.12%), Postives = 80/91 (87.91%), Query Frame = 1


Query: 1  MSSEQERCELDARARQGETVVPGGTGGKSLEAQEHLAEGRSRGGQTRKEQLGHEGYQEMG 60
          M+S+QE+ +LD RA++GETVVPGGTGGKS EAQ+HLAEGRSRGGQTRKEQLG EGYQ+MG
Sbjct: 1  MASQQEKKQLDERAKKGETVVPGGTGGKSFEAQQHLAEGRSRGGQTRKEQLGTEGYQQMG 60

Query: 61 RKGGLSNSGMPGGERAAEEGVEIDESKFRAK 92
          RKGGLS    PGGE A EEGVEIDESKFR K
Sbjct: 61 RKGGLSTGDKPGGEHAEEEGVEIDESKFRTK 91

[Close]

BLAST of Cp4.1LG10g07790 vs. Swiss-Prot
Match: EML_PICGL (Em-like protein OS=Picea glauca PE=3 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 7.3e-32
Identity = 71/89 (79.78%), Postives = 81/89 (91.01%), Query Frame = 1


Query: 1  MSSEQERCELDARARQGETVVPGGTGGKSLEAQEHLAEGRSRGGQTRKEQLGHEGYQEMG 60
          M  +Q+R ELDA+AR+GETVVPGGTGGKSL+AQE LAEGRSRGGQTRKEQ+G EGYQEMG
Sbjct: 1  MEQQQDRRELDAKAREGETVVPGGTGGKSLDAQERLAEGRSRGGQTRKEQIGSEGYQEMG 60

Query: 61 RKGGLSNSGMPGGERAAEEGVEIDESKFR 90
          RKGGLS++G PGGERA+EEG  IDESK+R
Sbjct: 61 RKGGLSSAGGPGGERASEEGRPIDESKYR 89

[Close]

BLAST of Cp4.1LG10g07790 vs. Swiss-Prot
Match: EM4_WHEAT (Em protein H5 OS=Triticum aestivum GN=EMH5 PE=2 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 2.1e-31
Identity = 71/90 (78.89%), Postives = 78/90 (86.67%), Query Frame = 1


Query: 2  SSEQERCELDARARQGETVVPGGTGGKSLEAQEHLAEGRSRGGQTRKEQLGHEGYQEMGR 61
          S +QER ELD  AR+GETVVPGGTGGKSLEAQEHLA+GRSRGG+TRKEQLG EGY+EMGR
Sbjct: 3  SGQQERSELDRMAREGETVVPGGTGGKSLEAQEHLADGRSRGGETRKEQLGEEGYREMGR 62

Query: 62 KGGLSNSGMPGGERAAEEGVEIDESKFRAK 92
          KGGLS     GGERAA EG+EIDESKF+ K
Sbjct: 63 KGGLSTMEESGGERAAREGIEIDESKFKTK 92

[Close]

BLAST of Cp4.1LG10g07790 vs. Swiss-Prot
Match: LE19A_HORVU (Late embryogenesis abundant protein B19.1A OS=Hordeum vulgare GN=B19.1A PE=2 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 2.3e-30
Identity = 67/90 (74.44%), Postives = 80/90 (88.89%), Query Frame = 1


Query: 2  SSEQERCELDARARQGETVVPGGTGGKSLEAQEHLAEGRSRGGQTRKEQLGHEGYQEMGR 61
          S +QER +LD +AR+GETVVPGGTGGKSLEAQ++LAEGRSRGGQTR+EQ+G EGY EMGR
Sbjct: 3  SGQQERSQLDRKAREGETVVPGGTGGKSLEAQQNLAEGRSRGGQTRREQMGQEGYSEMGR 62

Query: 62 KGGLSNSGMPGGERAAEEGVEIDESKFRAK 92
          KGGLS++   GGERAA EG++IDESKF+ K
Sbjct: 63 KGGLSSNDESGGERAAREGIDIDESKFKTK 92

[Close]

BLAST of Cp4.1LG10g07790 vs. TrEMBL
Match: A0A0A0KY00_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G311230 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 4.0e-37
Identity = 85/91 (93.41%), Postives = 88/91 (96.70%), Query Frame = 1


Query: 1  MSSEQERCELDARARQGETVVPGGTGGKSLEAQEHLAEGRSRGGQTRKEQLGHEGYQEMG 60
          MSSEQER +LDARARQGETV+PGGTGGKSLEAQEHLAEGRSRGGQTRKEQLGHEGYQEMG
Sbjct: 1  MSSEQERGKLDARARQGETVIPGGTGGKSLEAQEHLAEGRSRGGQTRKEQLGHEGYQEMG 60

Query: 61 RKGGLSNSGMPGGERAAEEGVEIDESKFRAK 92
          RKGGLSN+GM GGERAAEEGVEIDESKFR K
Sbjct: 61 RKGGLSNTGMSGGERAAEEGVEIDESKFRNK 91

[Close]

BLAST of Cp4.1LG10g07790 vs. TrEMBL
Match: A0A164TMB1_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_024819 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 3.0e-32
Identity = 75/91 (82.42%), Postives = 84/91 (92.31%), Query Frame = 1


Query: 1  MSSEQERCELDARARQGETVVPGGTGGKSLEAQEHLAEGRSRGGQTRKEQLGHEGYQEMG 60
          M+S+QE+ ELDARARQGETVVPGGTGGKSLEAQ+HLAEGRS+GGQTRKEQLG EGY EMG
Sbjct: 1  MASQQEKKELDARARQGETVVPGGTGGKSLEAQQHLAEGRSKGGQTRKEQLGGEGYHEMG 60

Query: 61 RKGGLSNSGMPGGERAAEEGVEIDESKFRAK 92
          RKGGLSN+ M GGERA +EG++IDESKFR K
Sbjct: 61 RKGGLSNNDMSGGERAEQEGIDIDESKFRTK 91

[Close]

BLAST of Cp4.1LG10g07790 vs. TrEMBL
Match: A0A022QGU2_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a025087mg PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 1.5e-31
Identity = 75/89 (84.27%), Postives = 81/89 (91.01%), Query Frame = 1


Query: 1  MSSEQERCELDARARQGETVVPGGTGGKSLEAQEHLAEGRSRGGQTRKEQLGHEGYQEMG 60
          M+S+QER ELDA+A+QGETVVPGGTGGKSLEAQEHLAEGRSRGGQTR+EQLG EGYQEMG
Sbjct: 1  MASQQERSELDAKAKQGETVVPGGTGGKSLEAQEHLAEGRSRGGQTRREQLGTEGYQEMG 60

Query: 61 RKGGLSNSGMPGGERAAEEGVEIDESKFR 90
          RKGGLS     GGERA EEGVEIDESKF+
Sbjct: 61 RKGGLSTGDKSGGERAEEEGVEIDESKFK 89

[Close]

BLAST of Cp4.1LG10g07790 vs. TrEMBL
Match: R0HI83_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10025705mg PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 9.6e-31
Identity = 73/91 (80.22%), Postives = 81/91 (89.01%), Query Frame = 1


Query: 1  MSSEQERCELDARARQGETVVPGGTGGKSLEAQEHLAEGRSRGGQTRKEQLGHEGYQEMG 60
          M+S+QE+ +LD RA++GETVVPGGTGGKSLEAQ+HLAEGRSRGGQTRKEQLG EGYQEMG
Sbjct: 1  MASQQEKKQLDERAKKGETVVPGGTGGKSLEAQQHLAEGRSRGGQTRKEQLGTEGYQEMG 60

Query: 61 RKGGLSNSGMPGGERAAEEGVEIDESKFRAK 92
          RKGGLS    PGGE A +EGVEIDESKFR K
Sbjct: 61 RKGGLSTGDKPGGENAEDEGVEIDESKFRTK 91

[Close]

BLAST of Cp4.1LG10g07790 vs. TrEMBL
Match: Q20A25_ELAGV (EMZ08 OS=Elaeis guineensis var. tenera PE=2 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 1.2e-30
Identity = 73/89 (82.02%), Postives = 80/89 (89.89%), Query Frame = 1


Query: 1  MSSEQERCELDARARQGETVVPGGTGGKSLEAQEHLAEGRSRGGQTRKEQLGHEGYQEMG 60
          M++ QER ELDA+ARQGETVVPGGTGG SLEAQEHLAEGRSRGGQTR+EQLG EGYQEMG
Sbjct: 1  MATRQERAELDAKARQGETVVPGGTGGHSLEAQEHLAEGRSRGGQTRREQLGTEGYQEMG 60

Query: 61 RKGGLSNSGMPGGERAAEEGVEIDESKFR 90
          RKGGLS +   GGERAA EG++IDESKFR
Sbjct: 61 RKGGLSTTDESGGERAAREGIQIDESKFR 89

[Close]

BLAST of Cp4.1LG10g07790 vs. TAIR10
Match: AT2G40170.1 (AT2G40170.1 Stress induced protein)

HSP 1 Score: 139.0 bits (349), Expect = 1.4e-33
Identity = 72/91 (79.12%), Postives = 80/91 (87.91%), Query Frame = 1


Query: 1  MSSEQERCELDARARQGETVVPGGTGGKSLEAQEHLAEGRSRGGQTRKEQLGHEGYQEMG 60
          M+S+QE+ +LD RA++GETVVPGGTGGKS EAQ+HLAEGRSRGGQTRKEQLG EGYQ+MG
Sbjct: 1  MASQQEKKQLDERAKKGETVVPGGTGGKSFEAQQHLAEGRSRGGQTRKEQLGTEGYQQMG 60

Query: 61 RKGGLSNSGMPGGERAAEEGVEIDESKFRAK 92
          RKGGLS    PGGE A EEGVEIDESKFR K
Sbjct: 61 RKGGLSTGDKPGGEHAEEEGVEIDESKFRTK 91

[Close]

BLAST of Cp4.1LG10g07790 vs. TAIR10
Match: AT3G51810.1 (AT3G51810.1 Stress induced protein)

HSP 1 Score: 101.7 bits (252), Expect = 2.5e-22
Identity = 71/150 (47.33%), Postives = 76/150 (50.67%), Query Frame = 1


Query: 2   SSEQERCELDARARQGETVVPGGTGGKSLEAQEHLAEGRSRGGQTR-------------- 61
           S +  R ELD +A+QGETVVPGGTGG SLEAQEHLAEGRS+GGQTR              
Sbjct: 3   SKQLSREELDEKAKQGETVVPGGTGGHSLEAQEHLAEGRSKGGQTRKEQLGHEGYQEIGH 62

Query: 62  ------KEQLGHEGYQEMG----------------------------------------R 92
                 KEQLGHEGYQEMG                                        R
Sbjct: 63  KGGEARKEQLGHEGYQEMGHKGGEARKEQLGHEGYQEMGHKGGEARKEQLGHEGYKEMGR 122

[Close]

BLAST of Cp4.1LG10g07790 vs. NCBI nr
Match: gi|659128443|ref|XP_008464209.1| (PREDICTED: EMB-1 protein-like [Cucumis melo])

HSP 1 Score: 162.2 bits (409), Expect = 4.4e-37
Identity = 86/91 (94.51%), Postives = 87/91 (95.60%), Query Frame = 1


Query: 1  MSSEQERCELDARARQGETVVPGGTGGKSLEAQEHLAEGRSRGGQTRKEQLGHEGYQEMG 60
          MSSEQER ELDARARQGETVVPGGTGGKSLEAQEHLAEGRSRGGQTRKEQLGHEGYQEMG
Sbjct: 1  MSSEQERGELDARARQGETVVPGGTGGKSLEAQEHLAEGRSRGGQTRKEQLGHEGYQEMG 60

Query: 61 RKGGLSNSGMPGGERAAEEGVEIDESKFRAK 92
          RKGGLSN+GM GGERAAEEGVEIDESKF  K
Sbjct: 61 RKGGLSNTGMSGGERAAEEGVEIDESKFTTK 91

[Close]

BLAST of Cp4.1LG10g07790 vs. NCBI nr
Match: gi|449461763|ref|XP_004148611.1| (PREDICTED: protein EMB-1 [Cucumis sativus])

HSP 1 Score: 161.8 bits (408), Expect = 5.8e-37
Identity = 85/91 (93.41%), Postives = 88/91 (96.70%), Query Frame = 1


Query: 1  MSSEQERCELDARARQGETVVPGGTGGKSLEAQEHLAEGRSRGGQTRKEQLGHEGYQEMG 60
          MSSEQER +LDARARQGETV+PGGTGGKSLEAQEHLAEGRSRGGQTRKEQLGHEGYQEMG
Sbjct: 1  MSSEQERGKLDARARQGETVIPGGTGGKSLEAQEHLAEGRSRGGQTRKEQLGHEGYQEMG 60

Query: 61 RKGGLSNSGMPGGERAAEEGVEIDESKFRAK 92
          RKGGLSN+GM GGERAAEEGVEIDESKFR K
Sbjct: 61 RKGGLSNTGMSGGERAAEEGVEIDESKFRNK 91

[Close]

BLAST of Cp4.1LG10g07790 vs. NCBI nr
Match: gi|119316|sp|P17639.1|EMB1_DAUCA (RecName: Full=Protein EMB-1; AltName: Full=Carrot ABA-induced in somatic embryos 4)

HSP 1 Score: 145.6 bits (366), Expect = 4.3e-32
Identity = 75/91 (82.42%), Postives = 84/91 (92.31%), Query Frame = 1


Query: 1  MSSEQERCELDARARQGETVVPGGTGGKSLEAQEHLAEGRSRGGQTRKEQLGHEGYQEMG 60
          M+S+QE+ ELDARARQGETVVPGGTGGKSLEAQ+HLAEGRS+GGQTRKEQLG EGY EMG
Sbjct: 1  MASQQEKKELDARARQGETVVPGGTGGKSLEAQQHLAEGRSKGGQTRKEQLGGEGYHEMG 60

Query: 61 RKGGLSNSGMPGGERAAEEGVEIDESKFRAK 92
          RKGGLSN+ M GGERA +EG++IDESKFR K
Sbjct: 61 RKGGLSNNDMSGGERAEQEGIDIDESKFRTK 91

[Close]

BLAST of Cp4.1LG10g07790 vs. NCBI nr
Match: gi|747075692|ref|XP_011084893.1| (PREDICTED: em-like protein GEA6 [Sesamum indicum])

HSP 1 Score: 144.4 bits (363), Expect = 9.5e-32
Identity = 76/89 (85.39%), Postives = 81/89 (91.01%), Query Frame = 1


Query: 1  MSSEQERCELDARARQGETVVPGGTGGKSLEAQEHLAEGRSRGGQTRKEQLGHEGYQEMG 60
          M+S+QER ELDARA+QGETVVPGGTGGKSLEAQEHLAEGRSRGGQTR+EQLG EGYQEMG
Sbjct: 1  MASQQERKELDARAKQGETVVPGGTGGKSLEAQEHLAEGRSRGGQTRREQLGTEGYQEMG 60

Query: 61 RKGGLSNSGMPGGERAAEEGVEIDESKFR 90
          RKGGLS     GGERA EEG+EIDESKFR
Sbjct: 61 RKGGLSTGDKAGGERAEEEGIEIDESKFR 89

[Close]

BLAST of Cp4.1LG10g07790 vs. NCBI nr
Match: gi|848899871|ref|XP_012850080.1| (PREDICTED: em-like protein GEA6 [Erythranthe guttata])

HSP 1 Score: 143.3 bits (360), Expect = 2.1e-31
Identity = 75/89 (84.27%), Postives = 81/89 (91.01%), Query Frame = 1


Query: 1  MSSEQERCELDARARQGETVVPGGTGGKSLEAQEHLAEGRSRGGQTRKEQLGHEGYQEMG 60
          M+S+QER ELDA+A+QGETVVPGGTGGKSLEAQEHLAEGRSRGGQTR+EQLG EGYQEMG
Sbjct: 1  MASQQERSELDAKAKQGETVVPGGTGGKSLEAQEHLAEGRSRGGQTRREQLGTEGYQEMG 60

Query: 61 RKGGLSNSGMPGGERAAEEGVEIDESKFR 90
          RKGGLS     GGERA EEGVEIDESKF+
Sbjct: 61 RKGGLSTGDKSGGERAEEEGVEIDESKFK 89

The following BLAST results are available for this feature:

BLAST of Cp4.1LG10g07790 vs. Swiss-Prot


Match Name	E-value	Identity	Description
EMB1_DAUCA	2.7e-34	82.42	Protein EMB-1 OS=Daucus carota GN=EMB-1 PE=1 SV=1	[more]
EM6_ARATH	2.5e-32	79.12	Em-like protein GEA6 OS=Arabidopsis thaliana GN=EM6 PE=2 SV=1	[more]
EML_PICGL	7.3e-32	79.78	Em-like protein OS=Picea glauca PE=3 SV=1	[more]
EM4_WHEAT	2.1e-31	78.89	Em protein H5 OS=Triticum aestivum GN=EMH5 PE=2 SV=1	[more]
LE19A_HORVU	2.3e-30	74.44	Late embryogenesis abundant protein B19.1A OS=Hordeum vulgare GN=B19.1A PE=2 SV=...	[more]

BLAST of Cp4.1LG10g07790 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KY00_CUCSA	4.0e-37	93.41	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G311230 PE=4 SV=1	[more]
A0A164TMB1_DAUCA	3.0e-32	82.42	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_024819 PE=4 SV=1	[more]
A0A022QGU2_ERYGU	1.5e-31	84.27	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a025087mg PE=4 SV=1	[more]
R0HI83_9BRAS	9.6e-31	80.22	Uncharacterized protein OS=Capsella rubella GN=CARUB_v10025705mg PE=4 SV=1	[more]
Q20A25_ELAGV	1.2e-30	82.02	EMZ08 OS=Elaeis guineensis var. tenera PE=2 SV=1	[more]

BLAST of Cp4.1LG10g07790 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G40170.1	1.4e-33	79.12	Stress induced protein	[more]
AT3G51810.1	2.5e-22	47.33	Stress induced protein	[more]

BLAST of Cp4.1LG10g07790 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659128443\|ref\|XP_008464209.1\|	4.4e-37	94.51	PREDICTED: EMB-1 protein-like [Cucumis melo]	[more]
gi\|449461763\|ref\|XP_004148611.1\|	5.8e-37	93.41	PREDICTED: protein EMB-1 [Cucumis sativus]	[more]
gi\|119316\|sp\|P17639.1\|EMB1_DAUCA	4.3e-32	82.42	RecName: Full=Protein EMB-1; AltName: Full=Carrot ABA-induced in somatic embryos...	[more]
gi\|747075692\|ref\|XP_011084893.1\|	9.5e-32	85.39	PREDICTED: em-like protein GEA6 [Sesamum indicum]	[more]
gi\|848899871\|ref\|XP_012850080.1\|	2.1e-31	84.27	PREDICTED: em-like protein GEA6 [Erythranthe guttata]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR022377	Sm_Hydphi_plant_seed_CS
IPR000389	Small_hydrophilic_seed_prot

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048700	acquisition of desiccation tolerance in seed
biological_process	GO:0009793	embryo development ending in seed dormancy
biological_process	GO:0008150	biological_process
biological_process	GO:0010228	vegetative to reproductive phase transition of meristem
biological_process	GO:0016114	terpenoid biosynthetic process
biological_process	GO:0010182	sugar mediated signaling pathway
biological_process	GO:0009845	seed germination
biological_process	GO:0050826	response to freezing
biological_process	GO:0009737	response to abscisic acid
biological_process	GO:0009909	regulation of flower development
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0009640	photomorphogenesis
biological_process	GO:0009933	meristem structural organization
biological_process	GO:0019915	lipid storage
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG10g07790.1	Cp4.1LG10g07790.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000389	Small hydrophilic plant seed protein	PANTHER	PTHR34671	FAMILY NOT NAMED	coord: 1..91 score: 9.8
IPR022377	Small hydrophilic plant seed protein, conserved site	PROSITE	PS00431	SMALL_HYDR_PLANT_SEED	coord: 17..25 scor
None	No IPR available	PANTHER	PTHR34671:SF1	EM-LIKE PROTEIN GEA6	coord: 1..91 score: 9.8
None	No IPR available	PFAM	PF00477	LEA_5	coord: 2..53 score: 1.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG10g07790	Cucsa.067320	Cucumber (Gy14) v1	cgycpeB0095
Cp4.1LG10g07790	CmaCh03G003410	Cucurbita maxima (Rimu)	cmacpeB656
Cp4.1LG10g07790	CmoCh03G003540	Cucurbita moschata (Rifu)	cmocpeB606
Cp4.1LG10g07790	Cla018093	Watermelon (97103) v1	cpewmB086
Cp4.1LG10g07790	Csa4G311230	Cucumber (Chinese Long) v2	cpecuB070
Cp4.1LG10g07790	MELO3C026002	Melon (DHL92) v3.5.1	cpemeB070
Cp4.1LG10g07790	ClCG04G006910	Watermelon (Charleston Gray)	cpewcgB078
Cp4.1LG10g07790	CSPI04G15980	Wild cucumber (PI 183967)	cpecpiB065
Cp4.1LG10g07790	Lsi01G015550	Bottle gourd (USVL1VR-Ls)	cpelsiB048
Cp4.1LG10g07790	MELO3C026002.2	Melon (DHL92) v3.6.1	cpemedB089
Cp4.1LG10g07790	CsaV3_4G026350	Cucumber (Chinese Long) v3	cpecucB0075
Cp4.1LG10g07790	Bhi03G001695	Wax gourd	cpewgoB0085
Cp4.1LG10g07790	CsGy4G015280	Cucumber (Gy14) v2	cgybcpeB463
Cp4.1LG10g07790	Carg20005	Silver-seed gourd	carcpeB0785

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG10g07790	Wax gourd	cpewgoB0076
Cp4.1LG10g07790	Cucurbita pepo (Zucchini)	cpecpeB074
Cp4.1LG10g07790	Cucurbita pepo (Zucchini)	cpecpeB093
Cp4.1LG10g07790	Cucurbita pepo (Zucchini)	cpecpeB094
Cp4.1LG10g07790	Cucurbita pepo (Zucchini)	cpecpeB105
Cp4.1LG10g07790	Cucumber (Gy14) v1	cgycpeB0482
Cp4.1LG10g07790	Cucurbita maxima (Rimu)	cmacpeB256
Cp4.1LG10g07790	Cucurbita maxima (Rimu)	cmacpeB701
Cp4.1LG10g07790	Cucurbita maxima (Rimu)	cmacpeB809
Cp4.1LG10g07790	Cucurbita maxima (Rimu)	cmacpeB862
Cp4.1LG10g07790	Cucurbita moschata (Rifu)	cmocpeB220
Cp4.1LG10g07790	Cucurbita moschata (Rifu)	cmocpeB265
Cp4.1LG10g07790	Cucurbita moschata (Rifu)	cmocpeB654
Cp4.1LG10g07790	Cucurbita moschata (Rifu)	cmocpeB763
Cp4.1LG10g07790	Cucurbita moschata (Rifu)	cmocpeB802
Cp4.1LG10g07790	Wild cucumber (PI 183967)	cpecpiB063
Cp4.1LG10g07790	Wild cucumber (PI 183967)	cpecpiB082
Cp4.1LG10g07790	Cucumber (Chinese Long) v2	cpecuB068
Cp4.1LG10g07790	Cucumber (Chinese Long) v2	cpecuB086
Cp4.1LG10g07790	Bottle gourd (USVL1VR-Ls)	cpelsiB061
Cp4.1LG10g07790	Bottle gourd (USVL1VR-Ls)	cpelsiB064
Cp4.1LG10g07790	Watermelon (Charleston Gray)	cpewcgB056
Cp4.1LG10g07790	Watermelon (97103) v1	cpewmB062
Cp4.1LG10g07790	Watermelon (97103) v1	cpewmB095
Cp4.1LG10g07790	Melon (DHL92) v3.5.1	cpemeB053
Cp4.1LG10g07790	Cucumber (Gy14) v2	cgybcpeB294
Cp4.1LG10g07790	Cucumber (Gy14) v2	cgybcpeB711
Cp4.1LG10g07790	Melon (DHL92) v3.6.1	cpemedB066
Cp4.1LG10g07790	Melon (DHL92) v3.6.1	cpemedB070
Cp4.1LG10g07790	Silver-seed gourd	carcpeB0220
Cp4.1LG10g07790	Silver-seed gourd	carcpeB0365
Cp4.1LG10g07790	Silver-seed gourd	carcpeB0825
Cp4.1LG10g07790	Silver-seed gourd	carcpeB1383
Cp4.1LG10g07790	Cucumber (Chinese Long) v3	cpecucB0073
Cp4.1LG10g07790	Cucumber (Chinese Long) v3	cpecucB0094