Cp4.1LG10g05180 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG10g05180
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Protein E6
Location	Cp4.1LG10 : 1057769 .. 1058689 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTAAAGAAGAGAGAAGGCCTATAAGAACAAAACGCGACCCATCCACCTCTCCTTCACTATACAACACAGTTCCACAACGCAACACAACTCCTCCTTTCAATCAATCCATGGCGAAACTCATTTCTACCCTCCTTCTCGCTCTTCTGTTCTTCCAAGTTCATGCAAGGGAAAGCCATTTCTTCAGCAAAGTACCCAACAATGGCGGCACCTTCTACACCAAAGAAACCCAAATCCCCAACAAGGCCGAGGATCCTTTGACAAACCCACAAAAAACTAGCGGCACCCCACAAGACCAAGACAAAGACCAAGACCAAGACCCCAACTTCCTCCCTCAAACCCAAGACAACAACTACGGCCTCTACGGCCATGAATCCGGCCAGCTCCCTCCAAATTCCGACGACAATTTCTCCGGTGACCGCCCGGACGACAATAAATACAGAAGAAACGACGCCGTTCCTTACAAATCCGAGTCAGAGGAGTACGACGACAACGACAATTTCCAAAACAGCAACACGAAGCCGTACGAGAATTCGTTTTATTACAACAAGGATCTTTACGACAACGGACGACAAAGCTTCCGCAACACCCGCCTTTCGCGAAATGATTACACTACAACTCCTTTATACAACCAGGAAAAGTACCACGGCGACGACGACAACAACAACTTCTACTACAACAACAACAATGCCAACAATGTGGTACGACAAGGGATGAGCGACACGAGATTCATGGAGAATGGAAAGTACTATTATGACCTCGACACGGAGCCTCACCATTACAGCAGGTCCCGGGGCTATTTCCGTAACAACAACAACAACAATGGGAACACATACGAGTACGGTAATTCCATGGGAAGGTATCAGAATCAGAATGATGAGGCAGAATTCCAGGAGGAACTCGATGAGTTCGTGCCATAA

mRNA sequence

ATGAGTAAAGAAGAGAGAAGGCCTATAAGAACAAAACGCGACCCATCCACCTCTCCTTCACTATACAACACAGTTCCACAACGCAACACAACTCCTCCTTTCAATCAATCCATGGCGAAACTCATTTCTACCCTCCTTCTCGCTCTTCTGTTCTTCCAAGTTCATGCAAGGGAAAGCCATTTCTTCAGCAAAGTACCCAACAATGGCGGCACCTTCTACACCAAAGAAACCCAAATCCCCAACAAGGCCGAGGATCCTTTGACAAACCCACAAAAAACTAGCGGCACCCCACAAGACCAAGACAAAGACCAAGACCAAGACCCCAACTTCCTCCCTCAAACCCAAGACAACAACTACGGCCTCTACGGCCATGAATCCGGCCAGCTCCCTCCAAATTCCGACGACAATTTCTCCGGTGACCGCCCGGACGACAATAAATACAGAAGAAACGACGCCGTTCCTTACAAATCCGAGTCAGAGGAGTACGACGACAACGACAATTTCCAAAACAGCAACACGAAGCCGTACGAGAATTCGTTTTATTACAACAAGGATCTTTACGACAACGGACGACAAAGCTTCCGCAACACCCGCCTTTCGCGAAATGATTACACTACAACTCCTTTATACAACCAGGAAAAGTACCACGGCGACGACGACAACAACAACTTCTACTACAACAACAACAATGCCAACAATGTGGTACGACAAGGGATGAGCGACACGAGATTCATGGAGAATGGAAAGTACTATTATGACCTCGACACGGAGCCTCACCATTACAGCAGGTCCCGGGGCTATTTCCGTAACAACAACAACAACAATGGGAACACATACGAGTACGGTAATTCCATGGGAAGGTATCAGAATCAGAATGATGAGGCAGAATTCCAGGAGGAACTCGATGAGTTCGTGCCATAA

Coding sequence (CDS)

ATGAGTAAAGAAGAGAGAAGGCCTATAAGAACAAAACGCGACCCATCCACCTCTCCTTCACTATACAACACAGTTCCACAACGCAACACAACTCCTCCTTTCAATCAATCCATGGCGAAACTCATTTCTACCCTCCTTCTCGCTCTTCTGTTCTTCCAAGTTCATGCAAGGGAAAGCCATTTCTTCAGCAAAGTACCCAACAATGGCGGCACCTTCTACACCAAAGAAACCCAAATCCCCAACAAGGCCGAGGATCCTTTGACAAACCCACAAAAAACTAGCGGCACCCCACAAGACCAAGACAAAGACCAAGACCAAGACCCCAACTTCCTCCCTCAAACCCAAGACAACAACTACGGCCTCTACGGCCATGAATCCGGCCAGCTCCCTCCAAATTCCGACGACAATTTCTCCGGTGACCGCCCGGACGACAATAAATACAGAAGAAACGACGCCGTTCCTTACAAATCCGAGTCAGAGGAGTACGACGACAACGACAATTTCCAAAACAGCAACACGAAGCCGTACGAGAATTCGTTTTATTACAACAAGGATCTTTACGACAACGGACGACAAAGCTTCCGCAACACCCGCCTTTCGCGAAATGATTACACTACAACTCCTTTATACAACCAGGAAAAGTACCACGGCGACGACGACAACAACAACTTCTACTACAACAACAACAATGCCAACAATGTGGTACGACAAGGGATGAGCGACACGAGATTCATGGAGAATGGAAAGTACTATTATGACCTCGACACGGAGCCTCACCATTACAGCAGGTCCCGGGGCTATTTCCGTAACAACAACAACAACAATGGGAACACATACGAGTACGGTAATTCCATGGGAAGGTATCAGAATCAGAATGATGAGGCAGAATTCCAGGAGGAACTCGATGAGTTCGTGCCATAA

Protein sequence

MSKEERRPIRTKRDPSTSPSLYNTVPQRNTTPPFNQSMAKLISTLLLALLFFQVHARESHFFSKVPNNGGTFYTKETQIPNKAEDPLTNPQKTSGTPQDQDKDQDQDPNFLPQTQDNNYGLYGHESGQLPPNSDDNFSGDRPDDNKYRRNDAVPYKSESEEYDDNDNFQNSNTKPYENSFYYNKDLYDNGRQSFRNTRLSRNDYTTTPLYNQEKYHGDDDNNNFYYNNNNANNVVRQGMSDTRFMENGKYYYDLDTEPHHYSRSRGYFRNNNNNNGNTYEYGNSMGRYQNQNDEAEFQEELDEFVP

Homology

[Close]

BLAST of Cp4.1LG10g05180 vs. Swiss-Prot
Match: E6_GOSHI (Protein E6 OS=Gossypium hirsutum GN=E6 PE=2 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.6e-19
Identity = 98/265 (36.98%), Postives = 136/265 (51.32%), Query Frame = 1


Query: 46  LLALLFFQVHARESHFFSKVPNNGGTFYTKETQIPNKAEDPLTNPQKTSGTPQDQDKDQD 105
           L AL   Q+HARE  +FSK P              N+ E      +  +  PQ   K ++
Sbjct: 15  LFALFSMQIHARE--YFSKFPRVN----------INEKETTTREQKHETFVPQTTQKPEE 74

Query: 106 QDPNFLPQTQDNNYGLYGHESGQLPPNSDDNFSGDRPDDNKYRRNDAVPYKSESEEYDDN 165
           Q+P F+P+TQ N YGLYGHESG   P+     + + P     R +   PY S  E     
Sbjct: 75  QEPRFIPETQ-NGYGLYGHESGSSRPSFTTKETYE-PYVTPVRFHPDEPYNSIPE----- 134

Query: 166 DNFQNSNTKPYENSFYYNKDLYDNGRQSFRNTRLSRNDYTTTPLYNQEKYHGDDDNNNFY 225
               +SN K   +++YYNK+ Y++ +Q      L    +T      +E     + NNN+Y
Sbjct: 135 ----SSNNK---DTYYYNKNAYESTKQQ----NLGEAIFTEKGWSTKE-----NQNNNYY 194

Query: 226 YNNNNANNVVRQGMSDTRFMENGKYYYDLDTE----PHHYSRSRGYFRNNNNNNGNTYEY 285
             NN  NN  +QGMSDTR++ENGKYYYD+ +E    P+ +  SRG   + N  N N Y  
Sbjct: 195 NGNNGYNNGEKQGMSDTRYLENGKYYYDVKSENNYYPNRFDNSRG-VASRNEFNENRY-- 238

Query: 286 GNSMGRYQNQNDEAEFQEELDEFVP 307
            N+MGRY +QN E EF+E  +EF P
Sbjct: 255 -NNMGRY-HQNQE-EFEESEEEFEP 238

[Close]

BLAST of Cp4.1LG10g05180 vs. TrEMBL
Match: A0A0A0KLJ0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G518090 PE=4 SV=1)

HSP 1 Score: 317.4 bits (812), Expect = 1.9e-83
Identity = 190/301 (63.12%), Postives = 220/301 (73.09%), Query Frame = 1


Query: 43  STLLLALLFFQVHARES-HFFSKVPNNG--GTFYTKETQIPNKAE-DPLTNPQKTSGTPQ 102
           S L+L L F Q+HARES +FFSK+PNN     F  KETQI N  + DPLTNP+KT+ + Q
Sbjct: 10  SILILTLFFLQIHARESKYFFSKIPNNNVDNNFDAKETQITNDEKVDPLTNPEKTTTSSQ 69

Query: 103 DQDKDQDQDPNFLPQTQDNNYGLYGHESGQLPPNSDDNFSG-----------------DR 162
           +     +Q PNF+PQTQDN YGLYGHESGQLPPNS+  F                   D 
Sbjct: 70  N-----NQQPNFIPQTQDNGYGLYGHESGQLPPNSNSKFFSQNGRENGRSFTTTTTYNDD 129

Query: 163 PDDNKYRRNDAVPYKSESEEY----DDNDN-----FQNSNTKPYENSFYYNKDLYDNGRQ 222
            D+NK++ +    YKSESEEY    +DN+N     F+NS +KPY+NSFYYNKDLYDNGRQ
Sbjct: 130 DDNNKFKNDVVSNYKSESEEYYNYDEDNNNNNFQTFENSGSKPYKNSFYYNKDLYDNGRQ 189

Query: 223 SFRNTRLSRNDYTTTPLYNQEKY------HGDDDNNNFYYNNNNANNVVRQGMSDTRFME 282
           SF N RLSR+DYTTTPLY+Q KY      +GD ++NN   NN+N NNVVRQGMSDTRFME
Sbjct: 190 SFPNARLSRDDYTTTPLYDQGKYDNFYSNNGDRNDNN---NNDNGNNVVRQGMSDTRFME 249

Query: 283 NGKYYYDLDTEPHHYSR-SRGYFRNNNNNNGNTYEYGNSMGRYQNQNDEAEFQEELDEFV 307
           NGKYYYDL+ EPHHYSR SRGYF NNNNNNGN+Y+YGNSMGRYQNQNDEAEFQEE DEFV
Sbjct: 250 NGKYYYDLNREPHHYSRSSRGYFGNNNNNNGNSYQYGNSMGRYQNQNDEAEFQEEPDEFV 302

[Close]

BLAST of Cp4.1LG10g05180 vs. TrEMBL
Match: A5AJH6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_10s0003g00220 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 2.4e-33
Identity = 120/290 (41.38%), Postives = 160/290 (55.17%), Query Frame = 1


Query: 45  LLLALLF---FQVHARESHFFSKV--PNNGGTFYTKETQIPNKAEDPLTNPQKTSGTPQD 104
           LLL +LF    Q+HAR+S FFSKV  PNN      +E+Q+PNK E               
Sbjct: 11  LLLLILFSSSLQIHARDSQFFSKVTNPNNNNNNVKEESQLPNKEE-----------LESK 70

Query: 105 QDKDQDQDPNFLPQTQDNNYGLYGHESGQLPPNSDDNFSGDRPDDNKYRRNDAVPYKSES 164
           Q K+Q+Q+P F+P TQ+  YGLYGH SGQLPP++  N                +PY    
Sbjct: 71  QLKEQEQEPTFVPDTQEG-YGLYGHGSGQLPPSTTGN---------------NIPYA--- 130

Query: 165 EEYDDNDNFQNSNTKPYENSFYYNKDLYDNGRQSFRNTRLSRNDYTTTPLYNQEKYHGDD 224
            EY +N+N          N++YYNK+ Y+  +Q  ++T L    YTT  + N+  Y+  D
Sbjct: 131 -EYSNNNN----------NNYYYNKNSYNAKQQGLKDTVLYDTGYTT--MSNRNNYYNGD 190

Query: 225 D---------NNNFYYNNNNANNVVRQGMSDTRFMENGKYYYDLDTEPHH---------- 284
           +         NNN   NNNN  N  +QGMSDTRF+ENG+YYYDL++E ++          
Sbjct: 191 NVYSSSSSNNNNNNNNNNNNGYNTKQQGMSDTRFLENGRYYYDLNSEKNYRNEYENSRTE 250

Query: 285 YSR----SRGYFRNNNNNNGNTYEYGNSMGRYQNQNDEAEFQEELDEFVP 307
           YSR    +RGY+  NNNNN N+YE+ NSM  YQNQ    ++QE  DEFVP
Sbjct: 251 YSRNEYNNRGYY-GNNNNNENSYEFDNSMEGYQNQE---QYQESQDEFVP 253

[Close]

BLAST of Cp4.1LG10g05180 vs. TrEMBL
Match: A9P9P9_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 9.1e-25
Identity = 111/296 (37.50%), Postives = 154/296 (52.03%), Query Frame = 1


Query: 40  KLISTLLLALLFF-QVHARESHFFSKVPNNGGTFYTKETQIPNKAEDPLTNPQKTSGTPQ 99
           +LIS L L  +F  Q+HARES FFSKV     T  T  T I N      T P K     +
Sbjct: 6   RLISFLFLLTIFSKQIHARESQFFSKVGATTATPST--TTINNNNVQDKTLPNKE----E 65

Query: 100 DQDKDQDQDPNFLPQTQDNNYGLYGHESGQLPPNSDDNFSGDRPDDNKYRRNDAVPYKSE 159
           +    Q+ DP F+P TQ N YGLYG ES Q P  +       +  +  Y      PYK++
Sbjct: 66  ESFNKQELDPAFIPDTQ-NGYGLYGQESSQFPTTT-------KLTNAPYTTTTYQPYKTQ 125

Query: 160 SEEYDDNDNFQNSNTKPYENSFYYNKDLYDNGRQSFRNTRLSRNDYTTTPLYNQEKYHG- 219
           ++  +   N+   +T     + +YN + Y+  +Q+F  T L  ++YT     N  KY+  
Sbjct: 126 TQTQETYTNYPTDSTTTTTTNNHYNNNAYEEQQQNFGETSLQESEYTNMGNQNSNKYYNG 185

Query: 220 -DDDNNNFYYNNNNA-NNVVRQGMSDTRFMENGKYYYDLDTE-----PHHYSR------- 279
            + +NNN YYN   + NN  +QGMSDTR++E+GKYYYD++ E     P+ Y +       
Sbjct: 186 ANSNNNNKYYNGAKSYNNDEKQGMSDTRYLEHGKYYYDVNNENSNYYPNQYQQNSRNNYN 245

Query: 280 SRGYFRNNNN--------NNGNT----YEY-GNSMGRYQNQNDEAEFQEELDEFVP 307
           +RGY+ NNNN        NN N     YEY  NSM +Y NQ+D  E QEE  ++VP
Sbjct: 246 TRGYYNNNNNNYNTRGYYNNNNNENSKYEYNNNSMQKYDNQDDFEESQEE--QYVP 285

[Close]

BLAST of Cp4.1LG10g05180 vs. TrEMBL
Match: A0A061GEA5_THECC (E6, putative OS=Theobroma cacao GN=TCM_029810 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 5.0e-23
Identity = 105/278 (37.77%), Postives = 152/278 (54.68%), Query Frame = 1


Query: 40  KLISTL-LLALLFFQVHARESHFFSKVPNNGGTFYTKETQIPNKAEDP----LTNPQKTS 99
           KLI  L LLA  F Q+HARE  FFSK+P        + T +PN  E      +   +KTS
Sbjct: 6   KLIPILFLLAFFFIQIHARE--FFSKIPRVNNN-EKESTTVPNTREQEHETFIPENEKTS 65

Query: 100 GTPQDQDK--DQDQDPNFLPQTQDNNYGLYGHESGQLPPNSDDNFSGDRPDDNKYRRNDA 159
              ++++    Q+Q+P F+P+T+ N YGLYGHESGQ PP +    +    +  +      
Sbjct: 66  LPNREEETFGRQEQEPRFIPETR-NGYGLYGHESGQFPPTTTTTTTTTTKETYEPY---V 125

Query: 160 VPYKSESEEYDDNDNFQNSNTKPYENSFYYNKDLYDNGRQSFRNTRLSRNDYTTTPLYNQ 219
            P K  ++E  +     N+N K   N++YYNK+ Y+  +Q+    R +   ++T      
Sbjct: 126 TPVKYHADEPYNMIPEANNNNK---NTYYYNKNTYETEKQNLGEARFTERGWSTK----- 185

Query: 220 EKYHGDDDNNNFYYNNNNANNVVRQGMSDTRFMENGKYYYDLDTEPHHYS----RSRGYF 279
                ++ NNN+YY NN  NN  +QG+SDTRF+ENGKY+YD+  E ++Y+     SRG  
Sbjct: 186 -----ENQNNNYYYGNNGYNNGEKQGLSDTRFLENGKYFYDVKNENNYYANQFENSRG-V 245

Query: 280 RNNNNNNGNTYEYGNSMGRYQNQNDEAEFQEELDEFVP 307
            + N  N N Y    +MGRY NQN E EF+E  +EF P
Sbjct: 246 ASRNEYNENRY---RNMGRY-NQNQE-EFEENEEEFEP 257

[Close]

BLAST of Cp4.1LG10g05180 vs. TrEMBL
Match: A9PDV3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s05640g PE=2 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 6.5e-23
Identity = 105/282 (37.23%), Postives = 150/282 (53.19%), Query Frame = 1


Query: 40  KLISTL-LLALLFFQVHARESHFFSKVPNNGGTFYTKETQIPNKAEDPLTNPQKTSGTPQ 99
           +LIS L LLA+L  Q+HARES FFSKV  +G T     T I N      T P K     +
Sbjct: 6   RLISFLFLLAILSVQIHARESQFFSKV--SGATTTPSTTTISNNNAQDKTLPGKEE---E 65

Query: 100 DQDKDQDQDPNFLPQTQDNNYGLYGHESGQLPPNSDDNFSGDRPDDNKYRRNDAVPYKSE 159
           +    Q+QDP F+P  Q N YGLYG E+ Q P  +      + P        ++ PYK++
Sbjct: 66  EGLSKQEQDPAFIPDNQ-NGYGLYGQETTQFPTTTK---LANAPYTT---TTNSQPYKTQ 125

Query: 160 SEEYDDNDNFQNSNTKPYENSFYYNKDLYD-NGRQSFRNTRLSRNDYTTTPLYNQEKYHG 219
           ++  +   N+  ++T    N+ YY+ + YD   +Q+F    L  + Y             
Sbjct: 126 TQNQETYTNYP-TDTTTNTNTNYYSNNAYDQEQQQNFGEKSLQESGYANM---------- 185

Query: 220 DDDNNNFYYNN-NNANNVVRQGMSDTRFMENGKYYYDLDTEPHHYS------------RS 279
            + NNN+YYN  N+ +N  +QGMSDTR++E GKYYYDL  E  +Y+             +
Sbjct: 186 GNQNNNYYYNGANSYSNDEKQGMSDTRYLEKGKYYYDLKGENSNYNPNQYQQDSRNNYNT 245

Query: 280 RGYFRNNNNNNGNTYEYGNSMGRYQNQNDEAEFQEELDEFVP 307
           RGY+ NNNNN  + +EY NSM +Y NQ+D  E +EE  ++VP
Sbjct: 246 RGYYSNNNNNENSKFEYNNSMQKYDNQDDFEESKEE--QYVP 262

[Close]

BLAST of Cp4.1LG10g05180 vs. TAIR10
Match: AT2G33850.1 (AT2G33850.1 unknown protein)

HSP 1 Score: 64.7 bits (156), Expect = 1.1e-10
Identity = 87/284 (30.63%), Postives = 122/284 (42.96%), Query Frame = 1


Query: 34  FNQSMAKLISTLLLALLFFQVHARESHFFSKVPNNGGTFYTKETQIPNKAEDPLTNPQKT 93
           F+ S       L L L   Q+ AR S+ F K           + Q PN      TN +K 
Sbjct: 3   FSTSSCLFFFLLTLVLFSTQISARNSYSFGKFQRED-----PKEQNPNNLVPIETNEKK- 62

Query: 94  SGTPQDQDKDQDQDPNFLPQTQDNNYGLYGHESGQLPPNSDDNFSGDRPDDN-KYRRNDA 153
                   +  DQ+P F+PQ++ N YGLYGHE+     N+++  + ++ +DN  Y  + +
Sbjct: 63  --------EPDDQNPAFIPQSE-NGYGLYGHETTD---NNNEELNNNKYEDNVNYDDSFS 122

Query: 154 VP-----------YKSESEEYDDNDNFQNSN--TKPYENSFYYNKDLYDNGRQSFRNTRL 213
            P           YK+  E Y       ++N  T  YENS  Y  D  DN      +   
Sbjct: 123 TPSLSETAQTQESYKNYKESYPKTTEIYDNNKDTSYYENSNAYGTDKRDN---DINDPYK 182

Query: 214 SRNDYTTTPLYNQEKYHGDDDNNNFYYNNNNANNVVRQGMSDTRFMENGKYYYDLDTEPH 273
             ++  T+   N   Y  +       Y   N NNV RQGMSDTR+M NGKYYYDLD + +
Sbjct: 183 GYSNKDTSYYENPNTYGTEKREKEPAYRGYN-NNVERQGMSDTRYMANGKYYYDLDDDRN 242

Query: 274 HYSRSRGYFRNNNNNNGNTYEYGNSMGRYQNQNDEAEFQEELDE 304
           H     G F  N+  N     Y      ++N  D  +  E L E
Sbjct: 243 H-----GRFYQNHYYNYKPTGYNEKKSNFKNPYDSNQQSEMLGE 259

[Close]

BLAST of Cp4.1LG10g05180 vs. NCBI nr
Match: gi|659080974|ref|XP_008441080.1| (PREDICTED: protein E6 [Cucumis melo])

HSP 1 Score: 334.3 bits (856), Expect = 2.2e-88
Identity = 198/299 (66.22%), Postives = 219/299 (73.24%), Query Frame = 1


Query: 43  STLLLALLFFQVHARES-HFFSKVPNNG------GTFYTKETQIPNKAE-DPLTNPQKTS 102
           S L+L LLF Q+HARES +FFSK+PNN         F  KETQIPN    DPLTNP+KT+
Sbjct: 10  SILILTLLFIQIHARESKYFFSKIPNNNVDNNNNNNFDAKETQIPNDENVDPLTNPEKTT 69

Query: 103 GTPQDQDKDQDQDPNFLPQTQDNNYGLYGHESGQLPPNSDDNFSGDRP------------ 162
            +PQ      DQ PNF+PQTQDN YGLYGHESGQLPPNSD  F  D              
Sbjct: 70  TSPQ------DQQPNFIPQTQDNGYGLYGHESGQLPPNSDSKFFSDNSRENGRSFTTTTT 129

Query: 163 ---DDNKYRRNDAVPYKSESEE---YDDNDN------FQNSNTKPYENSFYYNKDLYDNG 222
              +DNK+R +    YKSESEE   Y+DN+N      F+NSN+KPYENSFYYNKDLYDNG
Sbjct: 130 YDNNDNKFRNDVVSNYKSESEEYYNYEDNNNNNNFQTFENSNSKPYENSFYYNKDLYDNG 189

Query: 223 RQSFRNTRLSRNDYTTTPLYNQEKYHG-DDDNNNFYYNNNNANNVVRQGMSDTRFMENGK 282
           RQSF+NTRLSR+DYTTTPLY+Q KY    + NN    NNNN NN+VRQGMSDTRFMENGK
Sbjct: 190 RQSFQNTRLSRDDYTTTPLYDQGKYDNFYNSNNGGGDNNNNGNNMVRQGMSDTRFMENGK 249

Query: 283 YYYDLDTEPHHYSRSRGYFRN--NNNNNGNTYEYGNSMGRYQNQNDEAEFQEELDEFVP 307
           YYYDLD EPHHYSRSRGYF N  NNNNN N+YEYGNSMGRYQNQNDEAEFQEE DEFVP
Sbjct: 250 YYYDLDREPHHYSRSRGYFGNNINNNNNRNSYEYGNSMGRYQNQNDEAEFQEEPDEFVP 302

[Close]

BLAST of Cp4.1LG10g05180 vs. NCBI nr
Match: gi|449434326|ref|XP_004134947.1| (PREDICTED: protein E6-like [Cucumis sativus])

HSP 1 Score: 317.4 bits (812), Expect = 2.8e-83
Identity = 190/301 (63.12%), Postives = 220/301 (73.09%), Query Frame = 1


Query: 43  STLLLALLFFQVHARES-HFFSKVPNNG--GTFYTKETQIPNKAE-DPLTNPQKTSGTPQ 102
           S L+L L F Q+HARES +FFSK+PNN     F  KETQI N  + DPLTNP+KT+ + Q
Sbjct: 10  SILILTLFFLQIHARESKYFFSKIPNNNVDNNFDAKETQITNDEKVDPLTNPEKTTTSSQ 69

Query: 103 DQDKDQDQDPNFLPQTQDNNYGLYGHESGQLPPNSDDNFSG-----------------DR 162
           +     +Q PNF+PQTQDN YGLYGHESGQLPPNS+  F                   D 
Sbjct: 70  N-----NQQPNFIPQTQDNGYGLYGHESGQLPPNSNSKFFSQNGRENGRSFTTTTTYNDD 129

Query: 163 PDDNKYRRNDAVPYKSESEEY----DDNDN-----FQNSNTKPYENSFYYNKDLYDNGRQ 222
            D+NK++ +    YKSESEEY    +DN+N     F+NS +KPY+NSFYYNKDLYDNGRQ
Sbjct: 130 DDNNKFKNDVVSNYKSESEEYYNYDEDNNNNNFQTFENSGSKPYKNSFYYNKDLYDNGRQ 189

Query: 223 SFRNTRLSRNDYTTTPLYNQEKY------HGDDDNNNFYYNNNNANNVVRQGMSDTRFME 282
           SF N RLSR+DYTTTPLY+Q KY      +GD ++NN   NN+N NNVVRQGMSDTRFME
Sbjct: 190 SFPNARLSRDDYTTTPLYDQGKYDNFYSNNGDRNDNN---NNDNGNNVVRQGMSDTRFME 249

Query: 283 NGKYYYDLDTEPHHYSR-SRGYFRNNNNNNGNTYEYGNSMGRYQNQNDEAEFQEELDEFV 307
           NGKYYYDL+ EPHHYSR SRGYF NNNNNNGN+Y+YGNSMGRYQNQNDEAEFQEE DEFV
Sbjct: 250 NGKYYYDLNREPHHYSRSSRGYFGNNNNNNGNSYQYGNSMGRYQNQNDEAEFQEEPDEFV 302

[Close]

BLAST of Cp4.1LG10g05180 vs. NCBI nr
Match: gi|225443608|ref|XP_002279294.1| (PREDICTED: protein E6 [Vitis vinifera])

HSP 1 Score: 151.0 bits (380), Expect = 3.4e-33
Identity = 120/290 (41.38%), Postives = 160/290 (55.17%), Query Frame = 1


Query: 45  LLLALLF---FQVHARESHFFSKV--PNNGGTFYTKETQIPNKAEDPLTNPQKTSGTPQD 104
           LLL +LF    Q+HAR+S FFSKV  PNN      +E+Q+PNK E               
Sbjct: 11  LLLLILFSSSLQIHARDSQFFSKVTNPNNNNNNVKEESQLPNKEE-----------LESK 70

Query: 105 QDKDQDQDPNFLPQTQDNNYGLYGHESGQLPPNSDDNFSGDRPDDNKYRRNDAVPYKSES 164
           Q K+Q+Q+P F+P TQ+  YGLYGH SGQLPP++  N                +PY    
Sbjct: 71  QLKEQEQEPTFVPDTQEG-YGLYGHGSGQLPPSTTGN---------------NIPYA--- 130

Query: 165 EEYDDNDNFQNSNTKPYENSFYYNKDLYDNGRQSFRNTRLSRNDYTTTPLYNQEKYHGDD 224
            EY +N+N          N++YYNK+ Y+  +Q  ++T L    YTT  + N+  Y+  D
Sbjct: 131 -EYSNNNN----------NNYYYNKNSYNAKQQGLKDTVLYDTGYTT--MSNRNNYYNGD 190

Query: 225 D---------NNNFYYNNNNANNVVRQGMSDTRFMENGKYYYDLDTEPHH---------- 284
           +         NNN   NNNN  N  +QGMSDTRF+ENG+YYYDL++E ++          
Sbjct: 191 NVYSSSSSNNNNNNNNNNNNGYNTKQQGMSDTRFLENGRYYYDLNSEKNYRNEYENSRTE 250

Query: 285 YSR----SRGYFRNNNNNNGNTYEYGNSMGRYQNQNDEAEFQEELDEFVP 307
           YSR    +RGY+  NNNNN N+YE+ NSM  YQNQ    ++QE  DEFVP
Sbjct: 251 YSRNEYNNRGYY-GNNNNNENSYEFDNSMEGYQNQE---QYQESQDEFVP 253

[Close]

BLAST of Cp4.1LG10g05180 vs. NCBI nr
Match: gi|743914602|ref|XP_011001231.1| (PREDICTED: protein E6-like [Populus euphratica])

HSP 1 Score: 123.2 bits (308), Expect = 7.6e-25
Identity = 110/282 (39.01%), Postives = 152/282 (53.90%), Query Frame = 1


Query: 40  KLISTL-LLALLFFQVHARESHFFSKVPNNGGTFYTKETQIPNKAEDPLTNPQKTSGTPQ 99
           +LIS L LLA+L  Q+HARES FFSKV  +G T     T I N      T+P    G  +
Sbjct: 6   RLISFLFLLAILSVQIHARESQFFSKV--SGATTTPSTTTISNNNAQDKTHP----GKEE 65

Query: 100 DQDKDQDQDPNFLPQTQDNNYGLYGHESGQLPPNSDDNFSGDRPDDNKYRRNDAVPYKSE 159
           +    Q+QDP F+P  Q N YGLYG ES Q P  +       +  +  Y      PYK++
Sbjct: 66  EGLSKQEQDPAFIPDNQ-NGYGLYGQESTQFPTTT-------KLANAPYTTTTYQPYKTQ 125

Query: 160 SEEYDDNDNFQNSNTKPYENSFYYNKDLYDNGRQ-SFRNTRLSRNDYTTTPLYNQEKYHG 219
           ++  +   N+  ++T    N+ YYN + YD  +Q +F  T L  + YT   + NQ+    
Sbjct: 126 TQNQESYTNYP-TDTTTNTNTNYYNNNAYDQEQQQNFGETSLQESGYTN--MGNQK---- 185

Query: 220 DDDNNNFYYNNNNA-NNVVRQGMSDTRFMENGKYYYDLDTEPHHYS------------RS 279
               NN+YYN  N+ +N  +QGMSDTR++E GKYYYDL  E  +Y+             +
Sbjct: 186 ----NNYYYNGANSYSNDEKQGMSDTRYLEKGKYYYDLQGENSNYNPNQYHQDSRNNYNT 245

Query: 280 RGYFRNNNNNNGNTYEYGNSMGRYQNQNDEAEFQEELDEFVP 307
           RGY+ NNN N+   YEY NSM +Y NQ+D  E  EE  ++VP
Sbjct: 246 RGYYNNNNENS--KYEYTNSMQKYDNQDDFEESNEE--QYVP 258

[Close]

BLAST of Cp4.1LG10g05180 vs. NCBI nr
Match: gi|118482358|gb|ABK93102.1| (unknown [Populus trichocarpa])

HSP 1 Score: 122.5 bits (306), Expect = 1.3e-24
Identity = 111/296 (37.50%), Postives = 154/296 (52.03%), Query Frame = 1


Query: 40  KLISTLLLALLFF-QVHARESHFFSKVPNNGGTFYTKETQIPNKAEDPLTNPQKTSGTPQ 99
           +LIS L L  +F  Q+HARES FFSKV     T  T  T I N      T P K     +
Sbjct: 6   RLISFLFLLTIFSKQIHARESQFFSKVGATTATPST--TTINNNNVQDKTLPNKE----E 65

Query: 100 DQDKDQDQDPNFLPQTQDNNYGLYGHESGQLPPNSDDNFSGDRPDDNKYRRNDAVPYKSE 159
           +    Q+ DP F+P TQ N YGLYG ES Q P  +       +  +  Y      PYK++
Sbjct: 66  ESFNKQELDPAFIPDTQ-NGYGLYGQESSQFPTTT-------KLTNAPYTTTTYQPYKTQ 125

Query: 160 SEEYDDNDNFQNSNTKPYENSFYYNKDLYDNGRQSFRNTRLSRNDYTTTPLYNQEKYHG- 219
           ++  +   N+   +T     + +YN + Y+  +Q+F  T L  ++YT     N  KY+  
Sbjct: 126 TQTQETYTNYPTDSTTTTTTNNHYNNNAYEEQQQNFGETSLQESEYTNMGNQNSNKYYNG 185

Query: 220 -DDDNNNFYYNNNNA-NNVVRQGMSDTRFMENGKYYYDLDTE-----PHHYSR------- 279
            + +NNN YYN   + NN  +QGMSDTR++E+GKYYYD++ E     P+ Y +       
Sbjct: 186 ANSNNNNKYYNGAKSYNNDEKQGMSDTRYLEHGKYYYDVNNENSNYYPNQYQQNSRNNYN 245

Query: 280 SRGYFRNNNN--------NNGNT----YEY-GNSMGRYQNQNDEAEFQEELDEFVP 307
           +RGY+ NNNN        NN N     YEY  NSM +Y NQ+D  E QEE  ++VP
Sbjct: 246 TRGYYNNNNNNYNTRGYYNNNNNENSKYEYNNNSMQKYDNQDDFEESQEE--QYVP 285

The following BLAST results are available for this feature:

BLAST of Cp4.1LG10g05180 vs. Swiss-Prot


Match Name	E-value	Identity	Description
E6_GOSHI	1.6e-19	36.98	Protein E6 OS=Gossypium hirsutum GN=E6 PE=2 SV=1	[more]

BLAST of Cp4.1LG10g05180 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KLJ0_CUCSA	1.9e-83	63.12	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G518090 PE=4 SV=1	[more]
A5AJH6_VITVI	2.4e-33	41.38	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_10s0003g00220 PE=4 SV=...	[more]
A9P9P9_POPTR	9.1e-25	37.50	Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1	[more]
A0A061GEA5_THECC	5.0e-23	37.77	E6, putative OS=Theobroma cacao GN=TCM_029810 PE=4 SV=1	[more]
A9PDV3_POPTR	6.5e-23	37.23	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s05640g PE=2 SV=1	[more]

BLAST of Cp4.1LG10g05180 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G33850.1	1.1e-10	30.63	unknown protein	[more]

BLAST of Cp4.1LG10g05180 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659080974\|ref\|XP_008441080.1\|	2.2e-88	66.22	PREDICTED: protein E6 [Cucumis melo]	[more]
gi\|449434326\|ref\|XP_004134947.1\|	2.8e-83	63.12	PREDICTED: protein E6-like [Cucumis sativus]	[more]
gi\|225443608\|ref\|XP_002279294.1\|	3.4e-33	41.38	PREDICTED: protein E6 [Vitis vinifera]	[more]
gi\|743914602\|ref\|XP_011001231.1\|	7.6e-25	39.01	PREDICTED: protein E6-like [Populus euphratica]	[more]
gi\|118482358\|gb\|ABK93102.1\|	1.3e-24	37.50	unknown [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG10g05180.1	Cp4.1LG10g05180.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35274	FAMILY NOT NAMED	coord: 37..304 score: 1.7
None	No IPR available	PANTHER	PTHR35274:SF2	EXPRESSED PROTEIN-RELATED	coord: 37..304 score: 1.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG10g05180	Cucsa.046450	Cucumber (Gy14) v1	cgycpeB0034
Cp4.1LG10g05180	CmaCh03G012850	Cucurbita maxima (Rimu)	cmacpeB656
Cp4.1LG10g05180	CmaCh07G002210	Cucurbita maxima (Rimu)	cmacpeB861
Cp4.1LG10g05180	CmoCh03G012820	Cucurbita moschata (Rifu)	cmocpeB606
Cp4.1LG10g05180	Cla009640	Watermelon (97103) v1	cpewmB074
Cp4.1LG10g05180	Csa6G518090	Cucumber (Chinese Long) v2	cpecuB087
Cp4.1LG10g05180	MELO3C007263	Melon (DHL92) v3.5.1	cpemeB061
Cp4.1LG10g05180	ClCG01G023230	Watermelon (Charleston Gray)	cpewcgB062
Cp4.1LG10g05180	CSPI06G34880	Wild cucumber (PI 183967)	cpecpiB083
Cp4.1LG10g05180	Lsi01G002940	Bottle gourd (USVL1VR-Ls)	cpelsiB049
Cp4.1LG10g05180	MELO3C007263.2	Melon (DHL92) v3.6.1	cpemedB081
Cp4.1LG10g05180	CsaV3_6G050380	Cucumber (Chinese Long) v3	cpecucB0096
Cp4.1LG10g05180	Bhi03G000294	Wax gourd	cpewgoB0086
Cp4.1LG10g05180	CsGy6G034400	Cucumber (Gy14) v2	cgybcpeB713
Cp4.1LG10g05180	Carg07764	Silver-seed gourd	carcpeB0912
Cp4.1LG10g05180	Carg15309	Silver-seed gourd	carcpeB0772

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG10g05180	Cp4.1LG19g06910	Cucurbita pepo (Zucchini)	cpecpeB083

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG10g05180	Silver-seed gourd	carcpeB0212
Cp4.1LG10g05180	Cucumber (Chinese Long) v3	cpecucB0066
Cp4.1LG10g05180	Cucumber (Chinese Long) v3	cpecucB0060
Cp4.1LG10g05180	Wax gourd	cpewgoB0081
Cp4.1LG10g05180	Wax gourd	cpewgoB0107
Cp4.1LG10g05180	Cucurbita pepo (Zucchini)	cpecpeB018
Cp4.1LG10g05180	Cucurbita pepo (Zucchini)	cpecpeB069
Cp4.1LG10g05180	Cucurbita pepo (Zucchini)	cpecpeB088
Cp4.1LG10g05180	Cucumber (Gy14) v1	cgycpeB0325
Cp4.1LG10g05180	Cucurbita maxima (Rimu)	cmacpeB417
Cp4.1LG10g05180	Cucurbita moschata (Rifu)	cmocpeB379
Cp4.1LG10g05180	Cucurbita moschata (Rifu)	cmocpeB801
Cp4.1LG10g05180	Wild cucumber (PI 183967)	cpecpiB052
Cp4.1LG10g05180	Wild cucumber (PI 183967)	cpecpiB058
Cp4.1LG10g05180	Cucumber (Chinese Long) v2	cpecuB058
Cp4.1LG10g05180	Bottle gourd (USVL1VR-Ls)	cpelsiB058
Cp4.1LG10g05180	Watermelon (Charleston Gray)	cpewcgB069
Cp4.1LG10g05180	Watermelon (97103) v1	cpewmB069
Cp4.1LG10g05180	Melon (DHL92) v3.5.1	cpemeB048
Cp4.1LG10g05180	Cucumber (Gy14) v2	cgybcpeB025
Cp4.1LG10g05180	Cucumber (Gy14) v2	cgybcpeB158
Cp4.1LG10g05180	Melon (DHL92) v3.6.1	cpemedB060
Cp4.1LG10g05180	Melon (DHL92) v3.6.1	cpemedB062