Carg15309 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg15309
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	protein E6
Location	Cucurbita_argyrosperma_scaffold_085 : 276352 .. 277155 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGATGGCGAAACTCATTTCCGCCCTCCTTCTCGCTCTTCTGTTCTTCCAAGTTCATGCAAGGGAAAGCCATTTCTTCAGCAAAGTACCCAACAATGGCGGCACCTTCTACACCAAAGAAACCCAAATCCCCAACAAGGCGGAGGATCCTTTGACAAGCCCACAAAAAACCAGCGGCACCCCACAAGACCAAGACCCCAACTTCCTCCCTCAAACCCAAGACAACAACTACGGCCTCTACGGCCATGAATCCGGCCAGCTCCCTCCAAATTCCGACGACAATTTCTCCGGTGACCGCCCCGATGACAATAAGTACAGAAGAAACGACGCCGTTCCTTACAAATCCGAGTCAGAGGAGTACGACGACAACGACAATTTCCAAAACAGCAACACGAAGCCGTACGAGAATTCGTTTTATTACAACAAGGATCTTTACGACAACGGACGACAAAGCTTCCGCAACACCCGCCTTTCGCGAAATGATTACACTACAACTCCTTTATACAACCAGGAAAAATACCACAACGACGACCACGACGACGACAACAACAACTTCTACTACAACAACAACAACAATGCCAACAACGTGGTACGACAAGGGATGAGCGACACGAGATTCATGGAGAATGGAAAGTACTATTATGACCTCGACAGGGAGCCTCACCATTACAGCAGGTCCCGGGGCTATTTCCGTAACAACAACAACGGGAACACATACGAGTACGGTAATTCCATGGGAAGGTATCAGAATCAGAACGATGAGGCAGAATTCCAGGAGGAACTCGATGATTTCGTGCCATAA

mRNA sequence

ATGGCGATGGCGAAACTCATTTCCGCCCTCCTTCTCGCTCTTCTGTTCTTCCAAGTTCATGCAAGGGAAAGCCATTTCTTCAGCAAAGTACCCAACAATGGCGGCACCTTCTACACCAAAGAAACCCAAATCCCCAACAAGGCGGAGGATCCTTTGACAAGCCCACAAAAAACCAGCGGCACCCCACAAGACCAAGACCCCAACTTCCTCCCTCAAACCCAAGACAACAACTACGGCCTCTACGGCCATGAATCCGGCCAGCTCCCTCCAAATTCCGACGACAATTTCTCCGGTGACCGCCCCGATGACAATAAGTACAGAAGAAACGACGCCGTTCCTTACAAATCCGAGTCAGAGGAGTACGACGACAACGACAATTTCCAAAACAGCAACACGAAGCCGTACGAGAATTCGTTTTATTACAACAAGGATCTTTACGACAACGGACGACAAAGCTTCCGCAACACCCGCCTTTCGCGAAATGATTACACTACAACTCCTTTATACAACCAGGAAAAATACCACAACGACGACCACGACGACGACAACAACAACTTCTACTACAACAACAACAACAATGCCAACAACGTGGTACGACAAGGGATGAGCGACACGAGATTCATGGAGAATGGAAAGTACTATTATGACCTCGACAGGGAGCCTCACCATTACAGCAGGTCCCGGGGCTATTTCCGTAACAACAACAACGGGAACACATACGAGTACGGTAATTCCATGGGAAGGTATCAGAATCAGAACGATGAGGCAGAATTCCAGGAGGAACTCGATGATTTCGTGCCATAA

Coding sequence (CDS)

ATGGCGATGGCGAAACTCATTTCCGCCCTCCTTCTCGCTCTTCTGTTCTTCCAAGTTCATGCAAGGGAAAGCCATTTCTTCAGCAAAGTACCCAACAATGGCGGCACCTTCTACACCAAAGAAACCCAAATCCCCAACAAGGCGGAGGATCCTTTGACAAGCCCACAAAAAACCAGCGGCACCCCACAAGACCAAGACCCCAACTTCCTCCCTCAAACCCAAGACAACAACTACGGCCTCTACGGCCATGAATCCGGCCAGCTCCCTCCAAATTCCGACGACAATTTCTCCGGTGACCGCCCCGATGACAATAAGTACAGAAGAAACGACGCCGTTCCTTACAAATCCGAGTCAGAGGAGTACGACGACAACGACAATTTCCAAAACAGCAACACGAAGCCGTACGAGAATTCGTTTTATTACAACAAGGATCTTTACGACAACGGACGACAAAGCTTCCGCAACACCCGCCTTTCGCGAAATGATTACACTACAACTCCTTTATACAACCAGGAAAAATACCACAACGACGACCACGACGACGACAACAACAACTTCTACTACAACAACAACAACAATGCCAACAACGTGGTACGACAAGGGATGAGCGACACGAGATTCATGGAGAATGGAAAGTACTATTATGACCTCGACAGGGAGCCTCACCATTACAGCAGGTCCCGGGGCTATTTCCGTAACAACAACAACGGGAACACATACGAGTACGGTAATTCCATGGGAAGGTATCAGAATCAGAACGATGAGGCAGAATTCCAGGAGGAACTCGATGATTTCGTGCCATAA

Protein sequence

MAMAKLISALLLALLFFQVHARESHFFSKVPNNGGTFYTKETQIPNKAEDPLTSPQKTSGTPQDQDPNFLPQTQDNNYGLYGHESGQLPPNSDDNFSGDRPDDNKYRRNDAVPYKSESEEYDDNDNFQNSNTKPYENSFYYNKDLYDNGRQSFRNTRLSRNDYTTTPLYNQEKYHNDDHDDDNNNFYYNNNNNANNVVRQGMSDTRFMENGKYYYDLDREPHHYSRSRGYFRNNNNGNTYEYGNSMGRYQNQNDEAEFQEELDDFVP

Homology

[Close]

BLAST of Carg15309 vs. NCBI nr
Match: XP_022926083.1 (protein E6-like [Cucurbita moschata])

HSP 1 Score: 454.9 bits (1169), Expect = 1.9e-124
Identity = 266/269 (98.88%), Postives = 266/269 (98.88%), Query Frame = 0


Query: 1   MAMAKLISALLLALLFFQVHARESHFFSKVPNNGGTFYTKETQIPNKAEDPLTSPQKTSG 60
           MAMAKLISALLLALLFFQVHARESHFFSKVPNNGGTFYTKETQIPNKAEDPLTSPQKTSG
Sbjct: 1   MAMAKLISALLLALLFFQVHARESHFFSKVPNNGGTFYTKETQIPNKAEDPLTSPQKTSG 60

Query: 61  TP--QDQDPNFLPQTQDNNYGLYGHESGQLPPNSDDNFSGDRPDDNKYRRNDAVPYKSES 120
           TP  QDQDPNFLPQTQDNNYGLYGHESGQLPPNSDDNFSGDRPDDNKYRRNDAVPYKSES
Sbjct: 61  TPQDQDQDPNFLPQTQDNNYGLYGHESGQLPPNSDDNFSGDRPDDNKYRRNDAVPYKSES 120

Query: 121 EEYDDNDNFQNSNTKPYENSFYYNKDLYDNGRQSFRNTRLSRNDYTTTPLYXXXXXXXXX 180
           EEYDDNDNFQNSNTKPYENSFYYNKDLYDNGRQSFRNTR SRNDYTTTPLYXXXXXXXXX
Sbjct: 121 EEYDDNDNFQNSNTKPYENSFYYNKDLYDNGRQSFRNTRFSRNDYTTTPLYXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXXXRQGMSDTRFMENGKYYYDLDREPHHYSRSRGYFRNNXXGN 240
           XXXXXXXXXXXXXXXXXXXXRQGMSDTRFMENGKYYYDLDREPHHYSRSRGYFRNNXXGN
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXRQGMSDTRFMENGKYYYDLDREPHHYSRSRGYFRNNXXGN 240

Query: 241 TYEYGNSMGRYQNQNDEAEFQEELDDFVP 268
           TYEYGNSMGRYQNQNDEAEFQEELDDFVP
Sbjct: 241 TYEYGNSMGRYQNQNDEAEFQEELDDFVP 269

[Close]

BLAST of Carg15309 vs. NCBI nr
Match: XP_022978743.1 (protein E6-like [Cucurbita maxima])

HSP 1 Score: 392.9 bits (1008), Expect = 8.7e-106
Identity = 240/267 (89.89%), Postives = 244/267 (91.39%), Query Frame = 0


Query: 5   KLISALLLALLFFQVHARESHFFSKVPNNGGTFYTKETQIPNK--AEDPLTSPQKTSGTP 64
           KLIS LLLALLF QVHARESHFFSKVPNNGGTFYTKETQIPNK   EDPLT+PQKTSGTP
Sbjct: 6   KLISTLLLALLFIQVHARESHFFSKVPNNGGTFYTKETQIPNKEEEEDPLTNPQKTSGTP 65

Query: 65  QDQDPNFLPQTQDNNYGLYGHESGQLPPNSDDNFSGDRPDDNKYRRNDAVPYKSESEEYD 124
           QD DPNFLPQTQDNNYGLYGHESGQLPPNSDDNFSGDRPDDNKYRRNDAV YKSESEE+ 
Sbjct: 66  QDHDPNFLPQTQDNNYGLYGHESGQLPPNSDDNFSGDRPDDNKYRRNDAVSYKSESEEFY 125

Query: 125 DNDNFQNSNTKPYENSFYYNKDLYDNGRQSFRNTRLSRNDYTTTPLYXXXXXXXXXXXXX 184
           DNDNFQN NTKPYENSFYYNKDLYDNGRQSFRNTRLSRNDYTTTPLY  XXXXXXXXXXX
Sbjct: 126 DNDNFQNGNTKPYENSFYYNKDLYDNGRQSFRNTRLSRNDYTTTPLY--XXXXXXXXXXX 185

Query: 185 XXXXXXXXXXXXXXXXRQGMSDTRFMENGKYYYDLDREPHHYSRSR--GYFRNNXXGNTY 244
           XXXXXXXXXXXXXXXXRQGMSDTRFMENGKYYYDLDREPHHYSRSR        XX    
Sbjct: 186 XXXXXXXXXXXXXXXXRQGMSDTRFMENGKYYYDLDREPHHYSRSRXXXXXXXXXXXXXX 245

Query: 245 EYGNSMGRYQNQNDEAEFQEELDDFVP 268
           +YGNSMGRYQNQNDEAEFQEELD+FVP
Sbjct: 246 KYGNSMGRYQNQNDEAEFQEELDEFVP 270

[Close]

BLAST of Carg15309 vs. NCBI nr
Match: XP_023543144.1 (protein E6-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 370.9 bits (951), Expect = 3.6e-99
Identity = 231/273 (84.62%), Postives = 233/273 (85.35%), Query Frame = 0


Query: 3   MAKLISALLLALLFFQVHARESHFFSKVPNNGGTFYTKETQIPNKAEDPLTSPQKTSGTP 62
           MAKLIS LLLALLFFQVHARESHFFSKVPNNGGTFYTKETQIPNKAEDPLT+PQKTSGTP
Sbjct: 1   MAKLISTLLLALLFFQVHARESHFFSKVPNNGGTFYTKETQIPNKAEDPLTNPQKTSGTP 60

Query: 63  Q------DQDPNFLPQTQDNNYGLYGHESGQLPPNSDDNFSGDRPDDNKYRRNDAVPYKS 122
           Q          NFLPQTQDNNYGLYGHESGQLPPNSDDNFSGDRPDDNKYRRNDAVPYKS
Sbjct: 61  QXXXXXXXXXXNFLPQTQDNNYGLYGHESGQLPPNSDDNFSGDRPDDNKYRRNDAVPYKS 120

Query: 123 ESEEYDDNDNFQNSNTKPYENSFYYNKDLYDNGRQSFRNTRLSRNDYTTTPLYXXXXXXX 182
           ESEEYDDNDNFQNSNTKPYENSFYYNKDLYDNGRQSFRNTRLSRNDYTTTPLY     XX
Sbjct: 121 ESEEYDDNDNFQNSNTKPYENSFYYNKDLYDNGRQSFRNTRLSRNDYTTTPLY----NXX 180

Query: 183 XXXXXXXXXXXXXXXXXXXXXXRQGMSDTRFMENGKYYYDLDREPH--HYSRSRGYFRNN 242
           XXXXXXXXXXXXXXXXXXXXXXRQGMSDTRFMENGKYYYDLD EPH              
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXRQGMSDTRFMENGKYYYDLDTEPHXXXXXXXXXXXXXX 240

Query: 243 XXGNTYEYGNSMGRYQNQNDEAEFQEELDDFVP 268
           XX         MGRYQNQNDEAEFQEELD+FVP
Sbjct: 241 XXXXXXXXXXXMGRYQNQNDEAEFQEELDEFVP 269

[Close]

BLAST of Carg15309 vs. NCBI nr
Match: XP_008441080.1 (PREDICTED: protein E6 [Cucumis melo])

HSP 1 Score: 236.5 bits (602), Expect = 1.0e-58
Identity = 169/296 (57.09%), Postives = 184/296 (62.16%), Query Frame = 0


Query: 8   SALLLALLFFQVHARES-HFFSKVPN------NGGTFYTKETQIPNKAE-DPLTSPQKTS 67
           S L+L LLF Q+HARES +FFSK+PN          F  KETQIPN    DPLT+P+KT+
Sbjct: 10  SILILTLLFIQIHARESKYFFSKIPNXXXXXXXXXXFDAKETQIPNDENVDPLTNPEKTT 69

Query: 68  GTPQDQDPNFLPQTQDNNYGLYGHESGQLPPNSDDNFSGDRPDDN--------------- 127
            +PQDQ PNF+PQTQDN YGLYGHESGQLPPNSD  F  D   +N               
Sbjct: 70  TSPQDQQPNFIPQTQDNGYGLYGHESGQLPPNSDSKFFSDNSRENGRSXXXXXXXXXXXX 129

Query: 128 ---------KYRRNDAVPYKSESEEYDDNDNFQNSNTKPYENSFYYNKDLYDNGRQSFRN 187
                                          F+NSN+KPYENSFYYNKDLYDNGRQSF+N
Sbjct: 130 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXQTFENSNSKPYENSFYYNKDLYDNGRQSFQN 189

Query: 188 TRLSRNDYTTTPLYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQGMSDTRFMENGKYYY 247
           TRLSR+DYTTTPLY            XXXXXXXXXXXXXXXX RQGMSDTRFMENGKYYY
Sbjct: 190 TRLSRDDYTTTPLY---DQGKYDNFYXXXXXXXXXXXXXXXXVRQGMSDTRFMENGKYYY 249

Query: 248 DLDREPHHYSRSRGYFRNN----XXGNTYEYGNSMGRYQNQNDEAEFQEELDDFVP 268
           DLDREPHHYSRSRGYF NN    XX                 DEAEFQEE D+FVP
Sbjct: 250 DLDREPHHYSRSRGYFGNNXXXXXXXXXXXXXXXXXXXXXXXDEAEFQEEPDEFVP 302

[Close]

BLAST of Carg15309 vs. NCBI nr
Match: XP_022926835.1 (protein E6 [Cucurbita moschata])

HSP 1 Score: 233.8 bits (595), Expect = 6.8e-58
Identity = 185/288 (64.24%), Postives = 200/288 (69.44%), Query Frame = 0


Query: 5   KLISALLLALLFFQVHARESHFFSKVPNNGGTFYTKETQIPNKAEDPLTSPQKTSGTPQD 64
           KL+S  LL+L F Q+H RES+FFSKVPNN G     E+QIPNK  DPLT+ +KT+ TPQD
Sbjct: 6   KLLSLFLLSLFFIQIHGRESNFFSKVPNNNG-----ESQIPNKV-DPLTNSEKTT-TPQD 65

Query: 65  QDPNFLPQTQDNNYGLYGHESGQLPPNSDDNFS------GDRP---------DDNKYRRN 124
           QDPNF+PQTQDN YGLYGHESGQ  P SD  FS      G RP          +N Y+RN
Sbjct: 66  QDPNFIPQTQDNGYGLYGHESGQFSP-SDAKFSDPNARTGGRPFSTTTTYDDGENNYKRN 125

Query: 125 DAVPYKSE-------SEEYDDNDNFQNSNTKPYENSFYYNKDLYDNGRQSFRNTRLSRND 184
           D V YKSE                      KPYENSFYYNKDLYDN RQSF+NTRLSRN+
Sbjct: 126 DDVSYKSEXXXXXXXXXXXXXXXXXXXXXXKPYENSFYYNKDLYDNRRQSFQNTRLSRNE 185

Query: 185 Y--TTTPLYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQGMSDTRFMENGKYYYDLDRE 244
           Y        XXXXXXXXXXXXXXXXXXXXXXXXXXX  RQGMSDTRFMENGKY+YDL RE
Sbjct: 186 YXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVARQGMSDTRFMENGKYFYDLHRE 245

Query: 245 PHHYSR-SRGYFRNNXXGNTYEYGNSMGRYQNQNDEAEFQEELDDFVP 268
           P H SR SR  FR  XX  TYEYGNSMGRY  QNDE EFQEE D+FVP
Sbjct: 246 PQHQSRSSRNNFRXXXXXXTYEYGNSMGRY--QNDETEFQEESDEFVP 283

[Close]

BLAST of Carg15309 vs. TAIR10
Match: AT2G33850.1 (unknown protein)

HSP 1 Score: 45.1 bits (105), Expect = 8.1e-05
Identity = 90/268 (33.58%), Postives = 123/268 (45.90%), Query Frame = 0


Query: 10  LLLALLFFQVHARESHFFSKVPNNGGTFYTKETQIPNKAEDPLTSPQKTSGTPQDQDPNF 69
           L L L   Q+ AR S+ F K           + Q PN      T+ +K    P DQ+P F
Sbjct: 14  LTLVLFSTQISARNSYSFGKFQRE-----DPKEQNPNNLVPIETNEKK---EPDDQNPAF 73

Query: 70  LPQTQDNNYGLYGHESGQLPPNSDDNFSGDRPDDNKYRRNDAVPYKSES----EEYDDND 129
           +PQ+ +N YGLYGHE+     N+++                + P  SE+    E Y +  
Sbjct: 74  IPQS-ENGYGLYGHET--TDNNNEELXXXXXXXXXXXXXXFSTPSLSETAQTQESYKNYK 133

Query: 130 NFQNSNTKPYEN----SFYYNKDLYDNGRQSFRNTRLSRNDYTTTPLYXXXXXXXXXXXX 189
                 T+ Y+N    S+Y N + Y   +   R+  ++          XXXXXXXXXXXX
Sbjct: 134 ESYPKTTEIYDNNKDTSYYENSNAYGTDK---RDNDINDPYKGYXXXXXXXXXXXXXXXX 193

Query: 190 XXXXXXXXXXXXXXXXXRQGMSDTRFMENGKYYYDLDREPHHYSRSRGYFRN-NXXGNTY 249
           XXXXXX           RQGMSDTR+M NGKYYYDLD + +H    + ++ N    G   
Sbjct: 194 XXXXXXPAYRGYNNNVERQGMSDTRYMANGKYYYDLDDDRNHGRFYQNHYYNYKPTGYNE 253

Query: 250 EYGNSMGRY-QNQNDEAEFQEELDDFVP 268
           +  N    Y  NQ  E   +E+ D   P
Sbjct: 254 KKSNFKNPYDSNQQSEMLGEEQGDQITP 267

[Close]

BLAST of Carg15309 vs. TAIR10
Match: AT1G28400.1 (unknown protein)

HSP 1 Score: 44.7 bits (104), Expect = 1.1e-04
Identity = 31/70 (44.29%), Postives = 36/70 (51.43%), Query Frame = 0


Query: 199 RQGMSDTRFMENGKYYYDL--DREPHHYSRS------RGYFRNNXXGNTYEYGNSMGRYQ 258
           RQGMSDTRFME G YYYDL  DR   HY R        GY+ +      YE       Y 
Sbjct: 239 RQGMSDTRFMEKGSYYYDLYNDRNHGHYYRKSHSKSPAGYYSSPATETNYE--QQSYSYG 298

Query: 259 NQNDEAEFQE 261
           N N+E  F++
Sbjct: 299 NNNEENSFKD 306

[Close]

BLAST of Carg15309 vs. Swiss-Prot
Match: sp|Q01197|E6_GOSHI (Protein E6 OS=Gossypium hirsutum OX=3635 GN=E6 PE=2 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 9.2e-06
Identity = 48/141 (34.04%), Postives = 72/141 (51.06%), Query Frame = 0


Query: 11  LLALLFFQVHARESHFFSKVPNNGGTFYTKETQIPNKAEDPLTSPQKTSGTPQDQDPNFL 70
           L AL   Q+HARE  +FSK P         E +   + +   T   +T+  P++Q+P F+
Sbjct: 15  LFALFSMQIHARE--YFSKFPR----VNINEKETTTREQKHETFVPQTTQKPEEQEPRFI 74

Query: 71  PQTQDNNYGLYGHESGQLPPNSDDNFSGDRPDDNKYRRNDAVPYKSESEEYDDNDNFQNS 130
           P+TQ N YGLYGHESG   P+     + + P     R +   PY S  E         +S
Sbjct: 75  PETQ-NGYGLYGHESGSSRPSFTTKETYE-PYVTPVRFHPDEPYNSIPE---------SS 134

Query: 131 NTKPYENSFYYNKDLYDNGRQ 152
           N K   +++YYNK+ Y++ +Q
Sbjct: 135 NNK---DTYYYNKNAYESTKQ 135

[Close]

BLAST of Carg15309 vs. TrEMBL
Match: tr|A0A1S3B2M6|A0A1S3B2M6_CUCME (protein E6 OS=Cucumis melo OX=3656 GN=LOC103485307 PE=4 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 6.9e-59
Identity = 169/296 (57.09%), Postives = 184/296 (62.16%), Query Frame = 0


Query: 8   SALLLALLFFQVHARES-HFFSKVPN------NGGTFYTKETQIPNKAE-DPLTSPQKTS 67
           S L+L LLF Q+HARES +FFSK+PN          F  KETQIPN    DPLT+P+KT+
Sbjct: 10  SILILTLLFIQIHARESKYFFSKIPNXXXXXXXXXXFDAKETQIPNDENVDPLTNPEKTT 69

Query: 68  GTPQDQDPNFLPQTQDNNYGLYGHESGQLPPNSDDNFSGDRPDDN--------------- 127
            +PQDQ PNF+PQTQDN YGLYGHESGQLPPNSD  F  D   +N               
Sbjct: 70  TSPQDQQPNFIPQTQDNGYGLYGHESGQLPPNSDSKFFSDNSRENGRSXXXXXXXXXXXX 129

Query: 128 ---------KYRRNDAVPYKSESEEYDDNDNFQNSNTKPYENSFYYNKDLYDNGRQSFRN 187
                                          F+NSN+KPYENSFYYNKDLYDNGRQSF+N
Sbjct: 130 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXQTFENSNSKPYENSFYYNKDLYDNGRQSFQN 189

Query: 188 TRLSRNDYTTTPLYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQGMSDTRFMENGKYYY 247
           TRLSR+DYTTTPLY            XXXXXXXXXXXXXXXX RQGMSDTRFMENGKYYY
Sbjct: 190 TRLSRDDYTTTPLY---DQGKYDNFYXXXXXXXXXXXXXXXXVRQGMSDTRFMENGKYYY 249

Query: 248 DLDREPHHYSRSRGYFRNN----XXGNTYEYGNSMGRYQNQNDEAEFQEELDDFVP 268
           DLDREPHHYSRSRGYF NN    XX                 DEAEFQEE D+FVP
Sbjct: 250 DLDREPHHYSRSRGYFGNNXXXXXXXXXXXXXXXXXXXXXXXDEAEFQEEPDEFVP 302

[Close]

BLAST of Carg15309 vs. TrEMBL
Match: tr|A0A0A0KLJ0|A0A0A0KLJ0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G518090 PE=4 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 8.5e-57
Identity = 167/294 (56.80%), Postives = 187/294 (63.61%), Query Frame = 0


Query: 8   SALLLALLFFQVHARES-HFFSKVPNNG--GTFYTKETQIPNKAE-DPLTSPQKTSGTPQ 67
           S L+L L F Q+HARES +FFSK+PNN     F  KETQI N  + DPLT+P+KT+ + Q
Sbjct: 10  SILILTLFFLQIHARESKYFFSKIPNNNVDNNFDAKETQITNDEKVDPLTNPEKTTTSSQ 69

Query: 68  -DQDPNFLPQTQDNNYGLYGHESGQLPPNSDDNFSGDRPDDN------------------ 127
            +Q PNF+PQTQDN YGLYGHESGQLPPNS+  F      +N                  
Sbjct: 70  NNQQPNFIPQTQDNGYGLYGHESGQLPPNSNSKFFSQNGRENGRXXXXXXXXXXXXXXXX 129

Query: 128 --------KYRRNDAVPYKSESEEYDDNDNFQNSNTKPYENSFYYNKDLYDNGRQSFRNT 187
                                         F+NS +KPY+NSFYYNKDLYDNGRQSF N 
Sbjct: 130 XXXXXXXXXXXXXXXXXXXXXXXXXXXFQTFENSGSKPYKNSFYYNKDLYDNGRQSFPNA 189

Query: 188 RLSRNDYTTTPLYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQGMSDTRFMENGKYYYD 247
           RLSR+DYTTTPLY           XXXXXXXXXXXXXXXXX RQGMSDTRFMENGKYYYD
Sbjct: 190 RLSRDDYTTTPLY-DQGKYDNFYSXXXXXXXXXXXXXXXXXVRQGMSDTRFMENGKYYYD 249

Query: 248 LDREPHHYSRS---RGYFRNNXXGNTYEYGNSMGRYQNQNDEAEFQEELDDFVP 268
           L+REPHHYSRS          XX    +YGNSMGRYQNQNDEAEFQEE D+FVP
Sbjct: 250 LNREPHHYSRSXXXXXXXXXXXXXXXXQYGNSMGRYQNQNDEAEFQEEPDEFVP 302

[Close]

BLAST of Carg15309 vs. TrEMBL
Match: tr|A0A1Q3AXE2|A0A1Q3AXE2_CEPFO (Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_03855 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.2e-13
Identity = 102/253 (40.32%), Postives = 141/253 (55.73%), Query Frame = 0


Query: 5   KLISALLLALLF-FQVHARESHFFSKVPNNGGTFYTKETQIPNKAEDPLTSPQKTSGTP- 64
           K IS L L  +F  Q+ ARES FFSKV  N      +   +PN      T   + +  P 
Sbjct: 6   KFISILFLITIFSIQIQARESQFFSKVSTNFDNSAQETATLPNNQAQEQTVETQATTKPL 65

Query: 65  --QDQDPNFLPQTQDNNYGLYGHESGQLPPNSDDNFSGDRPDDNKYRRNDA--VPYKSES 124
             Q+Q+P F+P+TQ N YGLYGHESGQ PP++    + ++P+D  Y       +PY +++
Sbjct: 66  PTQEQEPTFIPETQ-NGYGLYGHESGQHPPST--TTTTNKPNDASYTTTGTGYLPYTTQA 125

Query: 125 EEYDDNDNFQNS---NTKPYENSFYYNKDLYDNGRQSFRNTRLSRNDYTTTPLYXXXXXX 184
           +E      ++++    T         NK+ Y+  +Q++ N+R +           XXXXX
Sbjct: 126 QETSPYKKYRDTYDPRTNTXXXXXXXNKNAYETDQQNWGNSRFTER---------XXXXX 185

Query: 185 XXXXXXXXXXXXXXXXXXXXXXXRQGMSDTRFMENGKYYYDLDRE----PHHYSRSRGYF 244
           XXXXXXXXXXXXXXXXXXXX   +QGMSDTR++ENG+Y+YD+  E    P+ Y  SR   
Sbjct: 186 XXXXXXXXXXXXXXXXXXXXNVEKQGMSDTRYLENGRYHYDIKNENNPYPNQYQNSRLVD 245

[Close]

BLAST of Carg15309 vs. TrEMBL
Match: tr|A0A151SAL9|A0A151SAL9_CAJCA (Protein E6 OS=Cajanus cajan OX=3821 GN=KK1_026209 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.4e-11
Identity = 112/282 (39.72%), Postives = 148/282 (52.48%), Query Frame = 0


Query: 3   MAKLISALLLALLFFQVH--ARESHFFSKVPNNGGTFYTKETQIPNKAEDPLTSPQKTSG 62
           ++  IS L L  L   +H  AR+S FFSKV +       KET++PNK    +  P+    
Sbjct: 4   LSNYISFLFLTTLVLPLHITARDSQFFSKVTHFNNNNNVKETELPNKEAPEINKPE---- 63

Query: 63  TPQDQDPNFLPQTQDNNYGLYGH-ESGQLPPNSDDNFSGDRPDDNKYRRNDAVPYKSESE 122
            PQ   P F+P+T +N+YGLYGH ES +LP N+        P    Y      PYK+   
Sbjct: 64  -PQ---PAFIPET-ENSYGLYGHDESNELPSNT--------PTPTSYH-----PYKA--- 123

Query: 123 EYDDNDNFQNSNTKPYENSFYYNKDLY-----DNGRQSFRNTRLSRNDYT--------TT 182
           +++D   + N   K      YYN D Y                LS   YT          
Sbjct: 124 QFEDPTKYPNPKNK------YYNNDAYXXXXXXXXXXXXXXXELSDTKYTQEGXXXXXXX 183

Query: 183 PLYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQGMSDTRFMENGKYYYDLDREPHHYSR 242
              XXXXXXXXXXXXXXXXXXXXXXXXXXX  +QGMSDTRF+E GKY+YDL+ E   Y+ 
Sbjct: 184 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEKQGMSDTRFLEGGKYFYDLNAEKETYNP 243

Query: 243 SRGYFRNNXXG-NTYEYGNSMGRYQNQNDEAEFQEELDDFVP 268
           +  Y+  +  G NT  + N+ G Y    ++ EF++E ++F P
Sbjct: 244 T--YYGESSRGVNTENWHNNRGNYNGYQNQEEFEDEQENFEP 252

[Close]

BLAST of Carg15309 vs. TrEMBL
Match: tr|A0A2P5WJ56|A0A2P5WJ56_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA29550 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 7.0e-11
Identity = 87/265 (32.83%), Postives = 122/265 (46.04%), Query Frame = 0


Query: 11  LLALLFFQVHARESHFFSKVPNNGGTFYTKETQIPNKAEDPLTSPQKTSGTPQDQDPNFL 70
           L AL   Q+HARE  +FSK P       T E +   + ++  T   +T+  P++Q+P F+
Sbjct: 15  LFALFSMQIHARE--YFSKFPR----VNTNEKETTTREQEHETFVPQTTQKPEEQEPRFI 74

Query: 71  PQTQDNNYGLYGHESGQLPPNSDDNFSGD---RPDDNKYRRNDAVPYKSESEEYDDNDNF 130
           P+TQ N YGLYGHESG    +S  +F+      P     R +   PY S  E        
Sbjct: 75  PETQ-NGYGLYGHESGS--GSSRPSFTTKETYEPYVTPVRFHPDEPYNSIPE-------- 134

Query: 131 QNSNTKPYENSFYYNKDLYDNGRQSFRNTRLSRNDYTTTPLYXXXXXXXXXXXXXXXXXX 190
            +SN K   +++YYNK+ Y + +Q      +      +T                     
Sbjct: 135 -SSNNK---DTYYYNKNAYKSTKQQNLGEAIFTEKGWST----------------KENQN 194

Query: 191 XXXXXXXXXXXRQGMSDTRFMENGKYYYDLDRE----PHHYSRSRGY-FRNNXXGNTYEY 250
                      +QGMSDTR++ENGKYYYD+  E    P+    SRG   RN    N Y  
Sbjct: 195 NNYYNGNINGEKQGMSDTRYLENGKYYYDVKSENSYYPNQLDNSRGVASRNEFDENRY-- 237

Query: 251 GNSMGRYQNQNDEAEFQEELDDFVP 268
            N+MGRY +QN E EF+    +F P
Sbjct: 255 -NNMGRY-HQNQE-EFEXXXXEFEP 237

The following BLAST results are available for this feature:

BLAST of Carg15309 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022926083.1	1.9e-124	98.88	protein E6-like [Cucurbita moschata]	[more]
XP_022978743.1	8.7e-106	89.89	protein E6-like [Cucurbita maxima]	[more]
XP_023543144.1	3.6e-99	84.62	protein E6-like [Cucurbita pepo subsp. pepo]	[more]
XP_008441080.1	1.0e-58	57.09	PREDICTED: protein E6 [Cucumis melo]	[more]
XP_022926835.1	6.8e-58	64.24	protein E6 [Cucurbita moschata]	[more]

BLAST of Carg15309 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G33850.1	8.1e-05	33.58	unknown protein	[more]
AT1G28400.1	1.1e-04	44.29	unknown protein	[more]

BLAST of Carg15309 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q01197\|E6_GOSHI	9.2e-06	34.04	Protein E6 OS=Gossypium hirsutum OX=3635 GN=E6 PE=2 SV=1	[more]

BLAST of Carg15309 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B2M6\|A0A1S3B2M6_CUCME	6.9e-59	57.09	protein E6 OS=Cucumis melo OX=3656 GN=LOC103485307 PE=4 SV=1	[more]
tr\|A0A0A0KLJ0\|A0A0A0KLJ0_CUCSA	8.5e-57	56.80	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G518090 PE=4 SV=1	[more]
tr\|A0A1Q3AXE2\|A0A1Q3AXE2_CEPFO	1.2e-13	40.32	Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_03855 PE=4...	[more]
tr\|A0A151SAL9\|A0A151SAL9_CAJCA	1.4e-11	39.72	Protein E6 OS=Cajanus cajan OX=3821 GN=KK1_026209 PE=4 SV=1	[more]
tr\|A0A2P5WJ56\|A0A2P5WJ56_GOSBA	7.0e-11	32.83	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA29550 PE=4 SV...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg15309-RA	Carg15309-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..138
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 96..122
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..81
None	No IPR available	PANTHER	PTHR35274	FAMILY NOT NAMED	coord: 4..267
None	No IPR available	PANTHER	PTHR35274:SF2	EXPRESSED PROTEIN-RELATED	coord: 4..267

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg15309	Cla009640	Watermelon (97103) v1	carwmB0545
Carg15309	Csa6G518090	Cucumber (Chinese Long) v2	carcuB0578
Carg15309	MELO3C007263	Melon (DHL92) v3.5.1	carmeB0554
Carg15309	ClCG01G023230	Watermelon (Charleston Gray)	carwcgB0531
Carg15309	CSPI06G34880	Wild cucumber (PI 183967)	carcpiB0584
Carg15309	Cucsa.046450	Cucumber (Gy14) v1	carcgyB0623
Carg15309	CmaCh07G002210	Cucurbita maxima (Rimu)	carcmaB0766
Carg15309	CmaCh03G012850	Cucurbita maxima (Rimu)	carcmaB0763
Carg15309	CmoCh03G012820	Cucurbita moschata (Rifu)	carcmoB0742
Carg15309	Lsi01G002940	Bottle gourd (USVL1VR-Ls)	carlsiB496
Carg15309	Cp4.1LG10g05180	Cucurbita pepo (Zucchini)	carcpeB0772
Carg15309	Cp4.1LG19g06910	Cucurbita pepo (Zucchini)	carcpeB0773
Carg15309	CsGy6G034400	Cucumber (Gy14) v2	carcgybB0554
Carg15309	MELO3C007263.2	Melon (DHL92) v3.6.1	carmedB0560
Carg15309	CsaV3_6G050380	Cucumber (Chinese Long) v3	carcucB0585
Carg15309	Bhi03G000294	Wax gourd	carwgoB0657

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg15309	Carg07764	Silver-seed gourd	carcarB507

The following block(s) are covering this gene:


Gene	Organism	Block
Carg15309	Silver-seed gourd	carcarB174
Carg15309	Silver-seed gourd	carcarB509
Carg15309	Cucumber (Gy14) v2	carcgybB0551
Carg15309	Cucumber (Gy14) v1	carcgyB0625
Carg15309	Cucurbita maxima (Rimu)	carcmaB0761
Carg15309	Cucurbita maxima (Rimu)	carcmaB0762
Carg15309	Cucurbita moschata (Rifu)	carcmoB0739
Carg15309	Cucurbita moschata (Rifu)	carcmoB0741
Carg15309	Cucurbita moschata (Rifu)	carcmoB0745
Carg15309	Cucurbita pepo (Zucchini)	carcpeB0771
Carg15309	Wild cucumber (PI 183967)	carcpiB0581
Carg15309	Cucumber (Chinese Long) v2	carcuB0575
Carg15309	Cucumber (Chinese Long) v3	carcucB0582
Carg15309	Bottle gourd (USVL1VR-Ls)	carlsiB497
Carg15309	Melon (DHL92) v3.5.1	carmeB0551
Carg15309	Melon (DHL92) v3.6.1	carmedB0557
Carg15309	Watermelon (Charleston Gray)	carwcgB0532
Carg15309	Watermelon (97103) v1	carwmB0544
Carg15309	Watermelon (97103) v2	carwmbB0571
Carg15309	Watermelon (97103) v2	carwmbB0573
Carg15309	Wax gourd	carwgoB0655
Carg15309	Wax gourd	carwgoB0659