Cp4.1LG09g11690 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG09g11690
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG09 : 9758640 .. 9759849 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATGGGTTTATGGCTGTTTTATTCAAAACCCCTTTTCTCCTGCAGGTCTTGTTCTGGAGTGAAGAGGTTTCAAGCTTCCACAAGCTACCATAATCTCTTCTCAATTTTGGTTCATTTTTGTTTCAGGGTCTTGGGTTTTCGTTGACATTGAAGATCGCTAAAACTTCCTCTGTTCTCCTGCCTTCGTTTATTCATTCATTATATTCTGAGGTTGCTAAGGCAGTTTCCAAATCAAGATATGTATGGTAAGGAGGAGAAGAAAATGAAGCAACTAAGAGAAGGAAAGTCCATTTCTGTGAGGAAAGTTCGTGTACTGTTTCACGATCCTGATGCCACTGACTACTCAAGTGAAGAAGATGAACATGTCAATCAAGATGCTAAAAACATTGTCTGGGAGATATCAGTGCCAGATATCCGCCATAAGATATCCAAGGAGAGCTCACATGGAGGCAAAATTAGAACCAAGGCTGAAGTCAAAGCAAGCAGTAGCAGAACACAAAGATCGTCTTCGATGTATAAAGGCGTTCGACGAAGGAAATGGGGGAAATATGCAGCAGAGATTCGAGATCCGTTTCGTGGCCGAAGATTGTGGCTTGGTACTTATAACACTGCTGAGGAAGCTGCTGTTGCTTATCAGAGAAAGAAGCACGAGTTCGAAAGTATGCAATCGATGGCGAAGGGCAGTGGTGAGCTTGGCCGAGAGCAACCGGAAGAGAAGAGCGGATCAGTTGCTGATTACACAGATGAATCTGAAAACATTATAGCTTTGTTTTCTCATCCTTCACCATCATCTGTACTGGATGTTTGTAGTGAAAGTTTATGCAGCAATGTGGATCAAACTATGGAACATTCAATCACTGAAGGATGTATGCCTGTGGTAGATGATGAAGACATCCTGAAATCCATCTATGAAGATGAGCAGTCCATTTTAGACATCATGGAAGCGACCCCGACCCCAACCCAGACCCCAACCCCGATAACTCTACCGCGATTAGATACTCAGGAATTGGACTTTCAAGTTCTTGAAGACAATTCATTGATCTTCAATGATTTTGATCAGTTCTTTCATGACACGAACTTCAGAGACAATTGTACTCTACACAGCATCGAAAACAGTGTCGGGGCGCTCGATCTTCCTCCGATGGATATGGAATTCGACAAGGAGTTTTCATGGTTTGACGATACGATGAGTATATCGTGCATGTAA

mRNA sequence

ATGTATGGGTTTATGGCTGTTTTATTCAAAACCCCTTTTCTCCTGCAGGGTCTTGGGTTTTCGTTGACATTGAAGATCGCTAAAACTTCCTCTGTTCTCCTGCCTTCGTTTATTCATTCATTATATTCTGAGGTTGCTAAGGCAGTTTCCAAATCAAGATATGGCAGTGGTGAGCTTGGCCGAGAGCAACCGGAAGAGAAGAGCGGATCAGTTGCTGATTACACAGATGAATCTGAAAACATTATAGCTTTGTTTTCTCATCCTTCACCATCATCTGTACTGGATGTTTGTAGTGAAAGTTTATGCAGCAATGTGGATCAAACTATGGAACATTCAATCACTGAAGGATGTATGCCTGTGGTAGATGATGAAGACATCCTGAAATCCATCTATGAAGATGAGCAGTCCATTTTAGACATCATGGAAGCGACCCCGACCCCAACCCAGACCCCAACCCCGATAACTCTACCGCGATTAGATACTCAGGAATTGGACTTTCAAGTTCTTGAAGACAATTCATTGATCTTCAATGATTTTGATCAGTTCTTTCATGACACGAACTTCAGAGACAATTGTACTCTACACAGCATCGAAAACAGTGTCGGGGCGCTCGATCTTCCTCCGATGGATATGGAATTCGACAAGGAGTTTTCATGGTTTGACGATACGATGAGTATATCGTGCATGTAA

Coding sequence (CDS)

ATGTATGGGTTTATGGCTGTTTTATTCAAAACCCCTTTTCTCCTGCAGGGTCTTGGGTTTTCGTTGACATTGAAGATCGCTAAAACTTCCTCTGTTCTCCTGCCTTCGTTTATTCATTCATTATATTCTGAGGTTGCTAAGGCAGTTTCCAAATCAAGATATGGCAGTGGTGAGCTTGGCCGAGAGCAACCGGAAGAGAAGAGCGGATCAGTTGCTGATTACACAGATGAATCTGAAAACATTATAGCTTTGTTTTCTCATCCTTCACCATCATCTGTACTGGATGTTTGTAGTGAAAGTTTATGCAGCAATGTGGATCAAACTATGGAACATTCAATCACTGAAGGATGTATGCCTGTGGTAGATGATGAAGACATCCTGAAATCCATCTATGAAGATGAGCAGTCCATTTTAGACATCATGGAAGCGACCCCGACCCCAACCCAGACCCCAACCCCGATAACTCTACCGCGATTAGATACTCAGGAATTGGACTTTCAAGTTCTTGAAGACAATTCATTGATCTTCAATGATTTTGATCAGTTCTTTCATGACACGAACTTCAGAGACAATTGTACTCTACACAGCATCGAAAACAGTGTCGGGGCGCTCGATCTTCCTCCGATGGATATGGAATTCGACAAGGAGTTTTCATGGTTTGACGATACGATGAGTATATCGTGCATGTAA

Protein sequence

MYGFMAVLFKTPFLLQGLGFSLTLKIAKTSSVLLPSFIHSLYSEVAKAVSKSRYGSGELGREQPEEKSGSVADYTDESENIIALFSHPSPSSVLDVCSESLCSNVDQTMEHSITEGCMPVVDDEDILKSIYEDEQSILDIMEATPTPTQTPTPITLPRLDTQELDFQVLEDNSLIFNDFDQFFHDTNFRDNCTLHSIENSVGALDLPPMDMEFDKEFSWFDDTMSISCM
Homology
[Close]
BLAST of Cp4.1LG09g11690 vs. TrEMBL
Match: A0A0A0LTN0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042290 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 7.2e-43
Identity = 103/191 (53.93%), Postives = 134/191 (70.16%), Query Frame = 1 

Query: 50  SKSRYGSGELGREQPEEKSGSVADYTDESENIIALFSHPSPSSVLDVCSESLCSN----- 109
           S   Y S   G +  E+K  S+ D T ESE IIA+FSHPSPSSVLD+C+ SL SN     
Sbjct: 149 SMENYSSELSGGKFEEKKIKSLVDDTAESEEIIAMFSHPSPSSVLDLCTGSLSSNGLKNV 208

Query: 110 -----VDQTMEHSITEGCMPVVDD-EDILKSIYEDEQSILDIMEATPTPTQTPTPITLPR 169
                VDQT EH+IT+   PV D  E++L+ I +DEQ I +I+E  P  +     + +P 
Sbjct: 209 IEEFKVDQTREHTITKKSKPVQDGAENMLEYICKDEQHISNILEEAPMSSMR---MPIPP 268

Query: 170 LDTQELDFQVLEDNSLIFNDFDQFFHDTNFRDNCTLHSIENSVGALDLPPMDMEFDKEFS 229
           L  +E+DFQVLEDN++I NDFDQ  +D N+ DNCTL++I+NS+GA+DLPPMD+EFDKEFS
Sbjct: 269 LGGREMDFQVLEDNAMICNDFDQLSNDMNYIDNCTLYNIDNSLGAIDLPPMDIEFDKEFS 328

[Close]
BLAST of Cp4.1LG09g11690 vs. NCBI nr
Match: gi|449439397|ref|XP_004137472.1| (PREDICTED: ethylene-responsive transcription factor CRF3-like [Cucumis sativus])

HSP 1 Score: 182.2 bits (461), Expect = 1.0e-42
Identity = 103/191 (53.93%), Postives = 134/191 (70.16%), Query Frame = 1 

Query: 50  SKSRYGSGELGREQPEEKSGSVADYTDESENIIALFSHPSPSSVLDVCSESLCSN----- 109
           S   Y S   G +  E+K  S+ D T ESE IIA+FSHPSPSSVLD+C+ SL SN     
Sbjct: 149 SMENYSSELSGGKFEEKKIKSLVDDTAESEEIIAMFSHPSPSSVLDLCTGSLSSNGLKNV 208

Query: 110 -----VDQTMEHSITEGCMPVVDD-EDILKSIYEDEQSILDIMEATPTPTQTPTPITLPR 169
                VDQT EH+IT+   PV D  E++L+ I +DEQ I +I+E  P  +     + +P 
Sbjct: 209 IEEFKVDQTREHTITKKSKPVQDGAENMLEYICKDEQHISNILEEAPMSSMR---MPIPP 268

Query: 170 LDTQELDFQVLEDNSLIFNDFDQFFHDTNFRDNCTLHSIENSVGALDLPPMDMEFDKEFS 229
           L  +E+DFQVLEDN++I NDFDQ  +D N+ DNCTL++I+NS+GA+DLPPMD+EFDKEFS
Sbjct: 269 LGGREMDFQVLEDNAMICNDFDQLSNDMNYIDNCTLYNIDNSLGAIDLPPMDIEFDKEFS 328

[Close]
BLAST of Cp4.1LG09g11690 vs. NCBI nr
Match: gi|659066720|ref|XP_008457889.1| (PREDICTED: ethylene-responsive transcription factor ERF071-like [Cucumis melo])

HSP 1 Score: 65.9 bits (159), Expect = 1.1e-07
Identity = 40/76 (52.63%), Postives = 48/76 (63.16%), Query Frame = 1 

Query: 50  SKSRYGSGELGREQPEEKSGSVADYTDESENIIALFSHPSPSSVLDVCSESLCS------ 109
           S   Y S   G +  E+K  S+ D T ESE IIA+FSHPSPSSVLD+C+ SLCS      
Sbjct: 149 SMENYSSELSGGKFEEKKIKSLVDDTAESEEIIAMFSHPSPSSVLDLCTGSLCSNGLKNV 208

Query: 110 ----NVDQTMEHSITE 116
               NVDQT EH+IT+
Sbjct: 209 IEEFNVDQTREHTITK 224

The following BLAST results are available for this feature:
BLAST of Cp4.1LG09g11690 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG09g11690 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LTN0_CUCSA7.2e-4353.93Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042290 PE=4 SV=1[more]
BLAST of Cp4.1LG09g11690 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG09g11690 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449439397|ref|XP_004137472.1|1.0e-4253.93PREDICTED: ethylene-responsive transcription factor CRF3-like [Cucumis sativus][more]
gi|659066720|ref|XP_008457889.1|1.1e-0752.63PREDICTED: ethylene-responsive transcription factor ERF071-like [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0003674 molecular_function
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG09g11690.1Cp4.1LG09g11690.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG09g11690Cucsa.121430Cucumber (Gy14) v1cgycpeB0306
Cp4.1LG09g11690CmaCh13G010270Cucurbita maxima (Rimu)cmacpeB213
Cp4.1LG09g11690CmaCh18G000380Cucurbita maxima (Rimu)cmacpeB416
Cp4.1LG09g11690CmoCh13G010680Cucurbita moschata (Rifu)cmocpeB183
Cp4.1LG09g11690CmoCh18G000320Cucurbita moschata (Rifu)cmocpeB377
Cp4.1LG09g11690Cla018506Watermelon (97103) v1cpewmB049
Cp4.1LG09g11690Csa1G042290Cucumber (Chinese Long) v2cpecuB029
Cp4.1LG09g11690MELO3C002085Melon (DHL92) v3.5.1cpemeB026
Cp4.1LG09g11690CSPI01G06730Wild cucumber (PI 183967)cpecpiB025
Cp4.1LG09g11690Lsi02G001780Bottle gourd (USVL1VR-Ls)cpelsiB026
Cp4.1LG09g11690MELO3C002085.2Melon (DHL92) v3.6.1cpemedB031
Cp4.1LG09g11690CsaV3_1G006600Cucumber (Chinese Long) v3cpecucB0031
Cp4.1LG09g11690Bhi08G001018Wax gourdcpewgoB0045
Cp4.1LG09g11690Carg04810Silver-seed gourdcarcpeB0539
Cp4.1LG09g11690Carg22753Silver-seed gourdcarcpeB0722
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG09g11690Cp4.1LG20g01130Cucurbita pepo (Zucchini)cpecpeB049
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG09g11690Wax gourdcpewgoB0027
Cp4.1LG09g11690Cucurbita pepo (Zucchini)cpecpeB027
Cp4.1LG09g11690Cucurbita pepo (Zucchini)cpecpeB032
Cp4.1LG09g11690Cucurbita pepo (Zucchini)cpecpeB053
Cp4.1LG09g11690Cucurbita maxima (Rimu)cmacpeB073
Cp4.1LG09g11690Cucurbita maxima (Rimu)cmacpeB106
Cp4.1LG09g11690Cucurbita moschata (Rifu)cmocpeB047
Cp4.1LG09g11690Cucurbita moschata (Rifu)cmocpeB083
Cp4.1LG09g11690Bottle gourd (USVL1VR-Ls)cpelsiB040
Cp4.1LG09g11690Watermelon (Charleston Gray)cpewcgB038
Cp4.1LG09g11690Watermelon (Charleston Gray)cpewcgB048
Cp4.1LG09g11690Watermelon (97103) v1cpewmB058
Cp4.1LG09g11690Cucumber (Gy14) v2cgybcpeB018
Cp4.1LG09g11690Cucumber (Gy14) v2cgybcpeB020
Cp4.1LG09g11690Melon (DHL92) v3.6.1cpemedB038
Cp4.1LG09g11690Silver-seed gourdcarcpeB0840
Cp4.1LG09g11690Cucumber (Chinese Long) v3cpecucB0033