Cp4.1LG09g11680 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG09g11680
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionMitochondrial import receptor subunit TOM5
LocationCp4.1LG09 : 9907237 .. 9910095 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGGAGTGAGGCAGAGAAGGGAAAGACTTTCTCATCCCATCTCACCTCTTATTTCAATTTCATCCCAATAAATTTTTCATTTCTGTTTGTGTATCCAGATCGATGAAAACTTGGCAATTTGCCAGCCAAATATTTTAAAATTCAACGGTTTTTCAAGTTGAGGGTAAATTCGTAAACTTGCTGTACAAGCCCACAAGCCCACAAGCCCACAAGCCCACAAGCCCACAAGCCCACAAGCCAATTCCTCTAGACTTGCAACCACACCCCAGAAACCCAAAACCCTAACGCCCTCACACGCCTTCCTCTCTGTAGTACAAGCGAAAATGGGTGACGCTTCGAGTTCGGTGAAGAAGGTGAAGAATTTTATCTTTTCCGGAACAGCTAATTCGGTGGAGACGGTGAAATCTTTTTTCAATTCCCAGGTTCATGACGACGAAAAGTGGGCCTTCAACATGGTACTCTTCTCATCATTTTGATTTCAATTCAAAAATTATTTCGTCCTTCTTAATCCGGACTTTCCCCGCAAAACTTCTTAGTTTGATTTATAGGACTGGGCTACAACCTTTTTATTGTTTTTATTTGTTTCTCTATTCGGTAGCTGAGGAAGTTTGTGAAATCATGAGATTTTTGTTCATTTCCGGCTCCAGATTACAGAATGTCGATCCTTTTGTTCATTTTGGAGTCCGACACTAGTAGACTTGAGTTATCCTCGCCGTTATAATTAAAGAAATTTCTGTGGTAAAGCTAATTTTTCTTGGAGATAGGTCTTTACAACATTTTGTCATATTAAAGAAATTAAATATTTTACAAAGCTTTTGAGGCTTATGCCTCTAAGCTTTTCTCAAGCCAACGTCATTTTTTAGCCTCGCGGTTGGCACCTTGTTTGGATCTTTAGAGGCTTGCAGCAACTCTTGATCATACACTTTTACGATTTGCACAATTAGTTTTTTATTAAATTTGAGGCTTGCTCCTCATACCACTTCAAGAGAAAAAAGCCTCGTGGCTGCCTTTAGCCTTTAGCTTATAGAATGTTTATTCAAATTGAATAATATGCAGAAAGTTATGATTTGTTCCGTCTTTCTGAGTTTTGGGTAAGAGTTTCCAATGCATGATAATTATCTTATATCTTGTGCCAGTGGAATATGCGTCATTCCATCTTATTGACCTGAATATGATAATTATCTCATCATAGCTGTCGCTGCAAGTAACTATGAAATCTGAATGCATTAAAAAACTGCTTTGGCATTAAGAAGAGGGATGCGTGCCTACAATTGGTTGTAACAGAGCATTTTTACTGCCTTATTTCATTATTTAGCGCTTGGGAGAAATATTGTTTGAGTAAGATTTCAGAGAGGAAATTCATGGTTATGTGAATTCTTTTTTTGTATGAACATCACTTCTAAAGAGATGTATCTTTGTCGTTTTTGCTTATATTTTAGTATTGTTGAATTATGCAGAACTGCATTTCAACTTCCTCTTTGTTGTTGCAGAAATTGCTTCGTGCAGCTGGAATGTTTGCAGGATCCATCCTTCTCATGCGGAATTATGGTGATCTTATGGCAATATGAGAGAGTTAACGAAGGTGCAGCAATTCTTTAGCTCATAACTTATCTCTATTTCTGAGCTTGTTATAACTCTCTTCAATTTCGGATAAGAAGTTTCAATTTTTTTTTTCTCTTGGTAATGTTGTAATCGATGAGAATGTTTCTTTTTTTTCTTCTTTGAAGTAGTTTTTTTTTTTTTTTTTTTTTCTTTTTCACCTAAAATAGATGGAAATATGAACTGAAACCCAAAACACTTGGTAAAACCTTCAAAACTAGAACACTACCTTCTTCCTCCCCAGAGAAAGAGAATTCTTTTTTGCTTTCTCACTTCAAGAATGGCATGCTGATTGTGCAGTGCAAATTTTGATGCATTGGTGCCTTGCTTTGTTCTTCTGCCATATGACAATTACAACTTGTATAAGAAAAGTACATTTCACTCGCATCAATCATCATTTATTTTGCCATTGCTCCTAAGATTAAGTCTTTAAACCTTTATGGACTCCACTTTCTAAATCTAGGATAATATCTGTCAAAAAAAAAAAGCTGATGACTGAAATAGTTCCTTCCTGTAAAGATATGAATATTCAAAACATATGAAGAGTCGTTACCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNAGTGGGATGTGATACCTGAAAATAGGCGTTCTGCTGATCCGTCATCACAGCCTTGCTTTTACAGCTTAAAGCCTGGAAAGTGACCCTATAAACATAGATGTGTGAATTGGCAATTTGGGACAGAAACGGAAGCCCAAATTGTGAAACGAAAACCCATAAAAGAGCGAAAAGCAACGAAAGCCCGACTTCTCCAAGATACTTAAAGCAGTGGAAGAGAGAAACGTGGAGACTTGGAAGACTGAAAAGCATGAGAGGGACTGAAAGCAATTTGATTTTGATGGAAGAAAAGGGGCAAAGATGATGAGATAGATGGTCATAATTGTTGTGGAAAATCATGAGATATTTTGGAGTTTTATCATAAGTTTGATGGACCAAAGAATAGAGAAGTGGAAGTAATGAAAAGGAAACCATGTGCTCAAGAAATTAGTAAGAGAAGAGAAAGCTTGTGCAAAAGATAGAAAAACATAGGTCAAGAAGAGAGCTGTGTGAGAGTAGACTGAAGTTAGTGAGGAGAGTTGATTGAAATTGCACAAATTGAAGAGAAGGGTAATGAATCATTTAACAAACTATCATCCACTCCATCACAAAGACCATTCCTTTTTGTATTTTCATCATACAAAAACTTCCACCAATCTTAATACTCAACCAAAAAA

mRNA sequence

ATGGGTGGAATCGATGAAAACTTGGCAATTTGCCAGCCAAATATTTTAAAATTCAACGTACAAGCGAAAATGGGTGACGCTTCGAGTTCGGTGAAGAAGGTGAAGAATTTTATCTTTTCCGGAACAGCTAATTCGGTGGAGACGGTGAAATCTTTTTTCAATTCCCAGGTTCATGACGACGAAAAGTGGGCCTTCAACATGAAATTGCTTCGTGCAGCTGGAATGTTTGCAGGATCCATCCTTCTCATGCGGAATTATGAATGGCATGCTGATTGTGCAGTGCAAATTTTGATGCATTGGTGCCTTGCTTTGTTCTTCTGCCATATGACAATTACAACTTGTATAAGAAAATGGGATGTGATACCTGAAAATAGGCGTTCTGCTGATCCGTCATCACAGCCTTGCTTTTACAGCTTAAAGCCTGGAAAGTGACCCTATAAACATAGATGTGTGAATTGGCAATTTGGGACAGAAACGGAAGCCCAAATTGTGAAACGAAAACCCATAAAAGAGCGAAAAGCAACGAAAGCCCGACTTCTCCAAGATACTTAAAGCAGTGGAAGAGAGAAACGTGGAGACTTGGAAGACTGAAAAGCATGAGAGGGACTGAAAGCAATTTGATTTTGATGGAAGAAAAGGGGCAAAGATGATGAGATAGATGGTCATAATTGTTGTGGAAAATCATGAGATATTTTGGAGTTTTATCATAAGTTTGATGGACCAAAGAATAGAGAAGTGGAAGTAATGAAAAGGAAACCATGTGCTCAAGAAATTAGTAAGAGAAGAGAAAGCTTGTGCAAAAGATAGAAAAACATAGGTCAAGAAGAGAGCTGTGTGAGAGTAGACTGAAGTTAGTGAGGAGAGTTGATTGAAATTGCACAAATTGAAGAGAAGGGTAATGAATCATTTAACAAACTATCATCCACTCCATCACAAAGACCATTCCTTTTTGTATTTTCATCATACAAAAACTTCCACCAATCTTAATACTCAACCAAAAAA

Coding sequence (CDS)

ATGGGTGGAATCGATGAAAACTTGGCAATTTGCCAGCCAAATATTTTAAAATTCAACGTACAAGCGAAAATGGGTGACGCTTCGAGTTCGGTGAAGAAGGTGAAGAATTTTATCTTTTCCGGAACAGCTAATTCGGTGGAGACGGTGAAATCTTTTTTCAATTCCCAGGTTCATGACGACGAAAAGTGGGCCTTCAACATGAAATTGCTTCGTGCAGCTGGAATGTTTGCAGGATCCATCCTTCTCATGCGGAATTATGAATGGCATGCTGATTGTGCAGTGCAAATTTTGATGCATTGGTGCCTTGCTTTGTTCTTCTGCCATATGACAATTACAACTTGTATAAGAAAATGGGATGTGATACCTGAAAATAGGCGTTCTGCTGATCCGTCATCACAGCCTTGCTTTTACAGCTTAAAGCCTGGAAAGTGA

Protein sequence

MGGIDENLAICQPNILKFNVQAKMGDASSSVKKVKNFIFSGTANSVETVKSFFNSQVHDDEKWAFNMKLLRAAGMFAGSILLMRNYEWHADCAVQILMHWCLALFFCHMTITTCIRKWDVIPENRRSADPSSQPCFYSLKPGK
Homology
[Close]
BLAST of Cp4.1LG09g11680 vs. Swiss-Prot
Match: TOM5_ARATH (Mitochondrial import receptor subunit TOM5 homolog OS=Arabidopsis thaliana GN=TOM5 PE=1 SV=3)

HSP 1 Score: 63.2 bits (152), Expect = 2.7e-09
Identity = 26/42 (61.90%), Postives = 37/42 (88.10%), Query Frame = 1 

Query: 45 SVETVKSFFNSQVHDDEKWAFNMKLLRAAGMFAGSILLMRNY 87
          S+E +K+ ++S+VHD++KWA NMKLLRA GMFAG ++LMR+Y
Sbjct: 7  SIEKMKALWHSEVHDEQKWAVNMKLLRALGMFAGGVVLMRSY 48

[Close]
BLAST of Cp4.1LG09g11680 vs. TrEMBL
Match: A0A0A0LSV3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G039240 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 3.4e-22
Identity = 56/63 (88.89%), Postives = 59/63 (93.65%), Query Frame = 1 

Query: 24 MGDASSSVKKVKNFIFSGTANSVETVKSFFNSQVHDDEKWAFNMKLLRAAGMFAGSILLM 83
          M D SSSVKKVKN +FSGTANSVETVKSFFNSQV+D+EKWA NMKLLRAAGMFAGSILLM
Sbjct: 1  MADDSSSVKKVKNLLFSGTANSVETVKSFFNSQVYDEEKWALNMKLLRAAGMFAGSILLM 60

Query: 84 RNY 87
          RNY
Sbjct: 61 RNY 63

[Close]
BLAST of Cp4.1LG09g11680 vs. TrEMBL
Match: B9RLM8_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1469630 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.7e-10
Identity = 33/42 (78.57%), Postives = 38/42 (90.48%), Query Frame = 1 

Query: 45 SVETVKSFFNSQVHDDEKWAFNMKLLRAAGMFAGSILLMRNY 87
          SVE +K+F NSQ+HD+EKWA NMKLLRAAG+FAGSI LMRNY
Sbjct: 7  SVEKLKAFLNSQIHDEEKWALNMKLLRAAGLFAGSIFLMRNY 48

[Close]
BLAST of Cp4.1LG09g11680 vs. TrEMBL
Match: V7CAL7_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G184100g PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.3e-10
Identity = 31/42 (73.81%), Postives = 40/42 (95.24%), Query Frame = 1 

Query: 45 SVETVKSFFNSQVHDDEKWAFNMKLLRAAGMFAGSILLMRNY 87
          S++ +K FFNSQ++DDEKWAFN+K+LRAAG+FAGSI+LMRNY
Sbjct: 7  SIQYLKDFFNSQIYDDEKWAFNVKMLRAAGLFAGSIVLMRNY 48

[Close]
BLAST of Cp4.1LG09g11680 vs. TrEMBL
Match: A0A0S3R7L0_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G453000 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 3.8e-10
Identity = 31/42 (73.81%), Postives = 39/42 (92.86%), Query Frame = 1 

Query: 45 SVETVKSFFNSQVHDDEKWAFNMKLLRAAGMFAGSILLMRNY 87
          S++ +K FFNSQ++DDEKWAFN+KLLRAAG+F GSI+LMRNY
Sbjct: 7  SIQYLKDFFNSQIYDDEKWAFNVKLLRAAGLFGGSIVLMRNY 48

[Close]
BLAST of Cp4.1LG09g11680 vs. TrEMBL
Match: A0A0D2QIC2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G101600 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 5.0e-10
Identity = 33/45 (73.33%), Postives = 40/45 (88.89%), Query Frame = 1 

Query: 42 TANSVETVKSFFNSQVHDDEKWAFNMKLLRAAGMFAGSILLMRNY 87
          T  S++ +K+F+NSQVHD+E WA NMKLLRAAG+FAGSILLMRNY
Sbjct: 4  TVISLDKLKAFWNSQVHDEENWAHNMKLLRAAGLFAGSILLMRNY 48

[Close]
BLAST of Cp4.1LG09g11680 vs. TAIR10
Match: AT5G08040.1 (AT5G08040.1 mitochondrial import receptor subunit TOM5 homolog)

HSP 1 Score: 63.2 bits (152), Expect = 1.5e-10
Identity = 26/42 (61.90%), Postives = 37/42 (88.10%), Query Frame = 1 

Query: 45 SVETVKSFFNSQVHDDEKWAFNMKLLRAAGMFAGSILLMRNY 87
          S+E +K+ ++S+VHD++KWA NMKLLRA GMFAG ++LMR+Y
Sbjct: 7  SIEKMKALWHSEVHDEQKWAVNMKLLRALGMFAGGVVLMRSY 48

[Close]
BLAST of Cp4.1LG09g11680 vs. NCBI nr
Match: gi|449439337|ref|XP_004137442.1| (PREDICTED: mitochondrial import receptor subunit TOM5 homolog [Cucumis sativus])

HSP 1 Score: 112.8 bits (281), Expect = 4.8e-22
Identity = 56/63 (88.89%), Postives = 59/63 (93.65%), Query Frame = 1 

Query: 24 MGDASSSVKKVKNFIFSGTANSVETVKSFFNSQVHDDEKWAFNMKLLRAAGMFAGSILLM 83
          M D SSSVKKVKN +FSGTANSVETVKSFFNSQV+D+EKWA NMKLLRAAGMFAGSILLM
Sbjct: 1  MADDSSSVKKVKNLLFSGTANSVETVKSFFNSQVYDEEKWALNMKLLRAAGMFAGSILLM 60

Query: 84 RNY 87
          RNY
Sbjct: 61 RNY 63

[Close]
BLAST of Cp4.1LG09g11680 vs. NCBI nr
Match: gi|951004603|ref|XP_014507906.1| (PREDICTED: mitochondrial import receptor subunit TOM5 homolog [Vigna radiata var. radiata])

HSP 1 Score: 74.3 bits (181), Expect = 1.9e-10
Identity = 32/42 (76.19%), Postives = 40/42 (95.24%), Query Frame = 1 

Query: 45 SVETVKSFFNSQVHDDEKWAFNMKLLRAAGMFAGSILLMRNY 87
          S++ +K FFNSQ++DDEKWAFN+KLLRAAG+FAGSI+LMRNY
Sbjct: 7  SIQYLKDFFNSQIYDDEKWAFNVKLLRAAGLFAGSIVLMRNY 48

[Close]
BLAST of Cp4.1LG09g11680 vs. NCBI nr
Match: gi|255547179|ref|XP_002514647.1| (PREDICTED: mitochondrial import receptor subunit TOM5 homolog [Ricinus communis])

HSP 1 Score: 73.9 bits (180), Expect = 2.5e-10
Identity = 33/42 (78.57%), Postives = 38/42 (90.48%), Query Frame = 1 

Query: 45 SVETVKSFFNSQVHDDEKWAFNMKLLRAAGMFAGSILLMRNY 87
          SVE +K+F NSQ+HD+EKWA NMKLLRAAG+FAGSI LMRNY
Sbjct: 7  SVEKLKAFLNSQIHDEEKWALNMKLLRAAGLFAGSIFLMRNY 48

[Close]
BLAST of Cp4.1LG09g11680 vs. NCBI nr
Match: gi|593784375|ref|XP_007155228.1| (hypothetical protein PHAVU_003G184100g [Phaseolus vulgaris])

HSP 1 Score: 73.6 bits (179), Expect = 3.2e-10
Identity = 31/42 (73.81%), Postives = 40/42 (95.24%), Query Frame = 1 

Query: 45 SVETVKSFFNSQVHDDEKWAFNMKLLRAAGMFAGSILLMRNY 87
          S++ +K FFNSQ++DDEKWAFN+K+LRAAG+FAGSI+LMRNY
Sbjct: 7  SIQYLKDFFNSQIYDDEKWAFNVKMLRAAGLFAGSIVLMRNY 48

[Close]
BLAST of Cp4.1LG09g11680 vs. NCBI nr
Match: gi|502151893|ref|XP_004508665.1| (PREDICTED: mitochondrial import receptor subunit TOM5 homolog [Cicer arietinum])

HSP 1 Score: 73.2 bits (178), Expect = 4.2e-10
Identity = 33/44 (75.00%), Postives = 39/44 (88.64%), Query Frame = 1 

Query: 43 ANSVETVKSFFNSQVHDDEKWAFNMKLLRAAGMFAGSILLMRNY 87
          A+S++ +K   NSQVHDDEKWAFN+KLLRAAG FAGSI+LMRNY
Sbjct: 5  ASSIQYLKDLVNSQVHDDEKWAFNVKLLRAAGFFAGSIVLMRNY 48

The following BLAST results are available for this feature:
BLAST of Cp4.1LG09g11680 vs. Swiss-Prot
Match NameE-valueIdentityDescription
TOM5_ARATH2.7e-0961.90Mitochondrial import receptor subunit TOM5 homolog OS=Arabidopsis thaliana GN=TO... [more]
BLAST of Cp4.1LG09g11680 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LSV3_CUCSA3.4e-2288.89Uncharacterized protein OS=Cucumis sativus GN=Csa_1G039240 PE=4 SV=1[more]
B9RLM8_RICCO1.7e-1078.57Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1469630 PE=4 SV=1[more]
V7CAL7_PHAVU2.3e-1073.81Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G184100g PE=4 SV=1[more]
A0A0S3R7L0_PHAAN3.8e-1073.81Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G453000 PE=... [more]
A0A0D2QIC2_GOSRA5.0e-1073.33Uncharacterized protein OS=Gossypium raimondii GN=B456_003G101600 PE=4 SV=1[more]
BLAST of Cp4.1LG09g11680 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G08040.11.5e-1061.90 mitochondrial import receptor subunit TOM5 homolog[more]
BLAST of Cp4.1LG09g11680 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449439337|ref|XP_004137442.1|4.8e-2288.89PREDICTED: mitochondrial import receptor subunit TOM5 homolog [Cucumis sativus][more]
gi|951004603|ref|XP_014507906.1|1.9e-1076.19PREDICTED: mitochondrial import receptor subunit TOM5 homolog [Vigna radiata var... [more]
gi|255547179|ref|XP_002514647.1|2.5e-1078.57PREDICTED: mitochondrial import receptor subunit TOM5 homolog [Ricinus communis][more]
gi|593784375|ref|XP_007155228.1|3.2e-1073.81hypothetical protein PHAVU_003G184100g [Phaseolus vulgaris][more]
gi|502151893|ref|XP_004508665.1|4.2e-1075.00PREDICTED: mitochondrial import receptor subunit TOM5 homolog [Cicer arietinum][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005739 mitochondrion
cellular_component GO:0009536 plastid
cellular_component GO:0005742 mitochondrial outer membrane translocase complex
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG09g11680.1Cp4.1LG09g11680.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR37251FAMILY NOT NAMEDcoord: 40..86
score: 2.8

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG09g11680CmaCh18G000020Cucurbita maxima (Rimu)cmacpeB416
Cp4.1LG09g11680CmoCh18G000020Cucurbita moschata (Rifu)cmocpeB377
Cp4.1LG09g11680Csa1G039240Cucumber (Chinese Long) v2cpecuB027
Cp4.1LG09g11680CSPI01G06180Wild cucumber (PI 183967)cpecpiB024
Cp4.1LG09g11680CsaV3_1G006040Cucumber (Chinese Long) v3cpecucB0030
Cp4.1LG09g11680CsGy1G005890Cucumber (Gy14) v2cgybcpeB016
Cp4.1LG09g11680Carg22785Silver-seed gourdcarcpeB0722
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG09g11680Cp4.1LG20g00820Cucurbita pepo (Zucchini)cpecpeB049
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG09g11680Cucumber (Gy14) v1cgycpeB0251
Cp4.1LG09g11680Cucurbita moschata (Rifu)cmocpeB183
Cp4.1LG09g11680Bottle gourd (USVL1VR-Ls)cpelsiB026
Cp4.1LG09g11680Watermelon (Charleston Gray)cpewcgB038
Cp4.1LG09g11680Watermelon (97103) v1cpewmB049
Cp4.1LG09g11680Melon (DHL92) v3.5.1cpemeB026
Cp4.1LG09g11680Cucumber (Gy14) v2cgybcpeB018
Cp4.1LG09g11680Melon (DHL92) v3.6.1cpemedB031
Cp4.1LG09g11680Cucumber (Chinese Long) v3cpecucB0031