Carg22785 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg22785
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	mitochondrial import receptor subunit TOM5 homolog
Location	Cucurbita_argyrosperma_scaffold_224 : 249251 .. 250989 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGACGCTTCGAGTTCGGTGAAGAAGGTGAAGAATTTTATCTTTTCCGGAACAGCTAATTCGGTGGAGACGGTGAAATCTTTTTTCAATTCCCAGGTTCATGACGAGGAAAAGTGGGCCTTGAACATGGTACTCCTCTCATCATTTTGATTTCAATTCAAAAATTATTTCGTCCTTCTTAATCCGGACTTTCCCCGCAAAACTTCTTAGTTTGATTTATAGGACTGGGCTACAACCTTTTTATTGTTTTTATTTGTTTCTCTATTCGGTAGCTGAGGAAGTTTGTGAAATCATGGGATTTTTGTTCATTTCCGGCTCCAGATTACAGAATGTCGATCCTTTAATGGAAATGCTAATTTTGGAGTCCGACACTAGTAGACTTAAGTTATCCTCGCCGTTATAATTAAAGAAATTTCTGTGGGAAAGCTAATTTTTCTTGGAGATAGGTCTTTACAACATTTTGTCATATTAAAGAAATTAAATATTTTACAAAGCTTTTGAGGCTTATGCCTCAAAGCTTTTCTCAAGCCAACGTCATTTTTTAGCCTCGCGGTTGGCACCTTGTTTGGATCTTTAGAGGCTTGCATCTTAATGAAAACGCACCAAAGGTAAAATTGTTTACACCTTGTCTAATGATTTGAAGAATGATACTAATTTGCTGCTCTATGCTTAAAAAATATAAAGGCTCCTTTGCGTTTCAAATGTTAATACGTGAGTTGTGGCAATGCAACTATAAGTAGTTTTATTTCCTAGGATTTAAAAACATTGAAGACTATAAGTGATAATAACGGTGATGTTGAGGATGACATTTTAGAATTTTTAATGAAGTGGAAAATTGGAATTGAGAGGGTTGTGCACTTTTATATAAAGTATTATATGTAGCAACTCTTGATCATACACTTTTACGATTTGCACAATTAGTTTTTTTTTATTAAATTTGAGGCTTGCTCCTCATACCACTTCAAGAGAAAAAAAGCCTCGTGGCTGCCTTTAGCCTTTAGCTTATAGAATGTTTGTTCAAATTGAATAATATGCAGAAAGTTATGATTTGTTCCGTCTTTCTGAGTTTTGGGTAAGAGTTTCCAATGCATGATAATTATCTTATATCTTGTGCCAGTGGAATATGCGTCATTCCATCTTATCGACCTGAATATGATAATTATCTCATCATAGCTGTCGCTGCAAGTAACTATGAAATCTGAATGCATTAAAAAACTGCTTTGGCATTAAGAAGAGGGATGCGTGCCTAGAATTGGTTGTAACAGAGCATTTTTACTGCCTTATTTCATTATTTAGCGCTTGGGAGAACTATTGTTTGAGTAAGATTTCAGAGAGGAAATTCATGGTTATGTGAATTCTTTTTTTGTATGAACATCACTTCTAAAGAGATGTATCTTTGTCATTTTTGCTTATATTTTAGTATTTTTGAATTATGCAGAACTGCATTTCAACTTCCTCTTTGTTGTTGCAGAAATTGCTTCGTGCAGCTGGAATGTTTGCAGGATCCATCCTTCTCATGCGAAATTATGGTGATCTTATGGCAATATGAGAGAGTTAACGAAGGTGCAGCAATTCTTTAGCTCATAACTTATCTCTATTTCTGAGCTTGTTATAACTCTCTTCAATTTCGGATAAGAAGTTTCAATTTTTTCTCTCTTGGTAATGTTGTAATCGATGAGAATGTTTCCTTTTTTTCTTCTTTGAAGTAGGTTTTTTTTTTTTTTTTTTTTTTCACC

mRNA sequence

ATGGGTGACGCTTCGAGTTCGGTGAAGAAGGTGAAGAATTTTATCTTTTCCGGAACAGCTAATTCGGTGGAGACGGTGAAATCTTTTTTCAATTCCCAGGTTCATGACGAGGAAAAGTGGGCCTTGAACATGAAATTGCTTCGTGCAGCTGGAATGTTTGCAGGATCCATCCTTCTCATGCGAAATTATGGTGATCTTATGGCAATATGAGAGAGTTAACGAAGGTGCAGCAATTCTTTAGCTCATAACTTATCTCTATTTCTGAGCTTGTTATAACTCTCTTCAATTTCGGATAAGAAGTTTCAATTTTTTCTCTCTTGGTAATGTTGTAATCGATGAGAATGTTTCCTTTTTTTCTTCTTTGAAGTAGGTTTTTTTTTTTTTTTTTTTTTTCACC

Coding sequence (CDS)

ATGGGTGACGCTTCGAGTTCGGTGAAGAAGGTGAAGAATTTTATCTTTTCCGGAACAGCTAATTCGGTGGAGACGGTGAAATCTTTTTTCAATTCCCAGGTTCATGACGAGGAAAAGTGGGCCTTGAACATGAAATTGCTTCGTGCAGCTGGAATGTTTGCAGGATCCATCCTTCTCATGCGAAATTATGGTGATCTTATGGCAATATGA

Protein sequence

MGDASSSVKKVKNFIFSGTANSVETVKSFFNSQVHDEEKWALNMKLLRAAGMFAGSILLMRNYGDLMAI

Homology

[Close]

BLAST of Carg22785 vs. NCBI nr
Match: XP_022924183.1 (mitochondrial import receptor subunit TOM5 homolog [Cucurbita moschata] >XP_023001126.1 mitochondrial import receptor subunit TOM5 homolog [Cucurbita maxima] >XP_023520288.1 mitochondrial import receptor subunit TOM5 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 129.8 bits (325), Expect = 3.6e-27
Identity = 66/69 (95.65%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 1  MGDASSSVKKVKNFIFSGTANSVETVKSFFNSQVHDEEKWALNMKLLRAAGMFAGSILLM 60
          M DASSSVKKVKNF+FSGTANSVETVKSF+NSQVHDEEKWALNMKLLRAAGMFAGSILLM
Sbjct: 1  MVDASSSVKKVKNFLFSGTANSVETVKSFYNSQVHDEEKWALNMKLLRAAGMFAGSILLM 60

Query: 61 RNYGDLMAI 70
          RNYGDLMAI
Sbjct: 61 RNYGDLMAI 69

[Close]

BLAST of Carg22785 vs. NCBI nr
Match: XP_004137442.1 (PREDICTED: mitochondrial import receptor subunit TOM5 homolog [Cucumis sativus] >XP_008451171.1 PREDICTED: mitochondrial import receptor subunit TOM5 homolog [Cucumis melo] >KGN64059.1 hypothetical protein Csa_1G039240 [Cucumis sativus])

HSP 1 Score: 123.6 bits (309), Expect = 2.6e-25
Identity = 63/69 (91.30%), Postives = 65/69 (94.20%), Query Frame = 0


Query: 1  MGDASSSVKKVKNFIFSGTANSVETVKSFFNSQVHDEEKWALNMKLLRAAGMFAGSILLM 60
          M D SSSVKKVKN +FSGTANSVETVKSFFNSQV+DEEKWALNMKLLRAAGMFAGSILLM
Sbjct: 1  MADDSSSVKKVKNLLFSGTANSVETVKSFFNSQVYDEEKWALNMKLLRAAGMFAGSILLM 60

Query: 61 RNYGDLMAI 70
          RNYGDLM I
Sbjct: 61 RNYGDLMTI 69

[Close]

BLAST of Carg22785 vs. NCBI nr
Match: XP_022137624.1 (mitochondrial import receptor subunit TOM5 homolog [Momordica charantia])

HSP 1 Score: 123.6 bits (309), Expect = 2.6e-25
Identity = 62/69 (89.86%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 1  MGDASSSVKKVKNFIFSGTANSVETVKSFFNSQVHDEEKWALNMKLLRAAGMFAGSILLM 60
          M DASSS+KKVKNFI SGT+NSVETV+SF NSQ+HDEEKWALNMKLLRAAGMFAGSILLM
Sbjct: 1  MADASSSMKKVKNFICSGTSNSVETVRSFLNSQIHDEEKWALNMKLLRAAGMFAGSILLM 60

Query: 61 RNYGDLMAI 70
          RNYGDLMAI
Sbjct: 61 RNYGDLMAI 69

[Close]

BLAST of Carg22785 vs. NCBI nr
Match: XP_002514647.1 (mitochondrial import receptor subunit TOM5 homolog [Ricinus communis] >EEF47753.1 conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 86.7 bits (213), Expect = 3.5e-14
Identity = 40/48 (83.33%), Postives = 45/48 (93.75%), Query Frame = 0


Query: 22 SVETVKSFFNSQVHDEEKWALNMKLLRAAGMFAGSILLMRNYGDLMAI 70
          SVE +K+F NSQ+HDEEKWALNMKLLRAAG+FAGSI LMRNYGDLMA+
Sbjct: 7  SVEKLKAFLNSQIHDEEKWALNMKLLRAAGLFAGSIFLMRNYGDLMAV 54

[Close]

BLAST of Carg22785 vs. NCBI nr
Match: XP_007037583.1 (PREDICTED: mitochondrial import receptor subunit TOM5 homolog [Theobroma cacao] >EOY22084.1 Mitochondrial import receptor subunit TOM5 [Theobroma cacao])

HSP 1 Score: 85.5 bits (210), Expect = 7.7e-14
Identity = 40/48 (83.33%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 22 SVETVKSFFNSQVHDEEKWALNMKLLRAAGMFAGSILLMRNYGDLMAI 70
          S++ VK+F++SQVHDEEKWALNMKLLRAAG+FAGSI LMRNYGDLMAI
Sbjct: 7  SIDKVKAFWHSQVHDEEKWALNMKLLRAAGLFAGSIFLMRNYGDLMAI 54

[Close]

BLAST of Carg22785 vs. TAIR10
Match: AT5G08040.1 (mitochondrial import receptor subunit TOM5 homolog)

HSP 1 Score: 73.6 bits (179), Expect = 5.5e-14
Identity = 31/48 (64.58%), Postives = 43/48 (89.58%), Query Frame = 0


Query: 22 SVETVKSFFNSQVHDEEKWALNMKLLRAAGMFAGSILLMRNYGDLMAI 70
          S+E +K+ ++S+VHDE+KWA+NMKLLRA GMFAG ++LMR+YGDLM +
Sbjct: 7  SIEKMKALWHSEVHDEQKWAVNMKLLRALGMFAGGVVLMRSYGDLMGV 54

[Close]

BLAST of Carg22785 vs. Swiss-Prot
Match: sp|Q9SD80|TOM5_ARATH (Mitochondrial import receptor subunit TOM5 homolog OS=Arabidopsis thaliana OX=3702 GN=TOM5 PE=1 SV=3)

HSP 1 Score: 73.6 bits (179), Expect = 9.9e-13
Identity = 31/48 (64.58%), Postives = 43/48 (89.58%), Query Frame = 0


Query: 22 SVETVKSFFNSQVHDEEKWALNMKLLRAAGMFAGSILLMRNYGDLMAI 70
          S+E +K+ ++S+VHDE+KWA+NMKLLRA GMFAG ++LMR+YGDLM +
Sbjct: 7  SIEKMKALWHSEVHDEQKWAVNMKLLRALGMFAGGVVLMRSYGDLMGV 54

[Close]

BLAST of Carg22785 vs. TrEMBL
Match: tr|A0A1S3BQV4|A0A1S3BQV4_CUCME (mitochondrial import receptor subunit TOM5 homolog OS=Cucumis melo OX=3656 GN=LOC103492520 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.7e-25
Identity = 63/69 (91.30%), Postives = 65/69 (94.20%), Query Frame = 0


Query: 1  MGDASSSVKKVKNFIFSGTANSVETVKSFFNSQVHDEEKWALNMKLLRAAGMFAGSILLM 60
          M D SSSVKKVKN +FSGTANSVETVKSFFNSQV+DEEKWALNMKLLRAAGMFAGSILLM
Sbjct: 1  MADDSSSVKKVKNLLFSGTANSVETVKSFFNSQVYDEEKWALNMKLLRAAGMFAGSILLM 60

Query: 61 RNYGDLMAI 70
          RNYGDLM I
Sbjct: 61 RNYGDLMTI 69

[Close]

BLAST of Carg22785 vs. TrEMBL
Match: tr|A0A0A0LSV3|A0A0A0LSV3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G039240 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.7e-25
Identity = 63/69 (91.30%), Postives = 65/69 (94.20%), Query Frame = 0


Query: 1  MGDASSSVKKVKNFIFSGTANSVETVKSFFNSQVHDEEKWALNMKLLRAAGMFAGSILLM 60
          M D SSSVKKVKN +FSGTANSVETVKSFFNSQV+DEEKWALNMKLLRAAGMFAGSILLM
Sbjct: 1  MADDSSSVKKVKNLLFSGTANSVETVKSFFNSQVYDEEKWALNMKLLRAAGMFAGSILLM 60

Query: 61 RNYGDLMAI 70
          RNYGDLM I
Sbjct: 61 RNYGDLMTI 69

[Close]

BLAST of Carg22785 vs. TrEMBL
Match: tr|B9RLM8|B9RLM8_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1469630 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.3e-14
Identity = 40/48 (83.33%), Postives = 45/48 (93.75%), Query Frame = 0


Query: 22 SVETVKSFFNSQVHDEEKWALNMKLLRAAGMFAGSILLMRNYGDLMAI 70
          SVE +K+F NSQ+HDEEKWALNMKLLRAAG+FAGSI LMRNYGDLMA+
Sbjct: 7  SVEKLKAFLNSQIHDEEKWALNMKLLRAAGLFAGSIFLMRNYGDLMAV 54

[Close]

BLAST of Carg22785 vs. TrEMBL
Match: tr|A0A061G4X4|A0A061G4X4_THECC (Mitochondrial import receptor subunit TOM5 OS=Theobroma cacao OX=3641 GN=TCM_014278 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 5.1e-14
Identity = 40/48 (83.33%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 22 SVETVKSFFNSQVHDEEKWALNMKLLRAAGMFAGSILLMRNYGDLMAI 70
          S++ VK+F++SQVHDEEKWALNMKLLRAAG+FAGSI LMRNYGDLMAI
Sbjct: 7  SIDKVKAFWHSQVHDEEKWALNMKLLRAAGLFAGSIFLMRNYGDLMAI 54

[Close]

BLAST of Carg22785 vs. TrEMBL
Match: tr|A0A1R3IAQ1|A0A1R3IAQ1_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_24344 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.1e-13
Identity = 39/48 (81.25%), Postives = 45/48 (93.75%), Query Frame = 0


Query: 22 SVETVKSFFNSQVHDEEKWALNMKLLRAAGMFAGSILLMRNYGDLMAI 70
          S++ VK+F+NSQVHDEEKWA NMKLLRAAG+FAGSI LMRNYGDLMA+
Sbjct: 7  SLDKVKAFWNSQVHDEEKWAANMKLLRAAGLFAGSIFLMRNYGDLMAV 54

The following BLAST results are available for this feature:

BLAST of Carg22785 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022924183.1	3.6e-27	95.65	mitochondrial import receptor subunit TOM5 homolog [Cucurbita moschata] >XP_0230...	[more]
XP_004137442.1	2.6e-25	91.30	PREDICTED: mitochondrial import receptor subunit TOM5 homolog [Cucumis sativus] ...	[more]
XP_022137624.1	2.6e-25	89.86	mitochondrial import receptor subunit TOM5 homolog [Momordica charantia]	[more]
XP_002514647.1	3.5e-14	83.33	mitochondrial import receptor subunit TOM5 homolog [Ricinus communis] >EEF47753....	[more]
XP_007037583.1	7.7e-14	83.33	PREDICTED: mitochondrial import receptor subunit TOM5 homolog [Theobroma cacao] ...	[more]

BLAST of Carg22785 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G08040.1	5.5e-14	64.58	mitochondrial import receptor subunit TOM5 homolog	[more]

BLAST of Carg22785 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SD80\|TOM5_ARATH	9.9e-13	64.58	Mitochondrial import receptor subunit TOM5 homolog OS=Arabidopsis thaliana OX=37...	[more]

BLAST of Carg22785 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BQV4\|A0A1S3BQV4_CUCME	1.7e-25	91.30	mitochondrial import receptor subunit TOM5 homolog OS=Cucumis melo OX=3656 GN=LO...	[more]
tr\|A0A0A0LSV3\|A0A0A0LSV3_CUCSA	1.7e-25	91.30	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G039240 PE=4 SV=1	[more]
tr\|B9RLM8\|B9RLM8_RICCO	2.3e-14	83.33	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1469630 PE=4 SV=1	[more]
tr\|A0A061G4X4\|A0A061G4X4_THECC	5.1e-14	83.33	Mitochondrial import receptor subunit TOM5 OS=Theobroma cacao OX=3641 GN=TCM_014...	[more]
tr\|A0A1R3IAQ1\|A0A1R3IAQ1_9ROSI	1.1e-13	81.25	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_24344 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005742	mitochondrial outer membrane translocase complex

Vocabulary: **INTERPRO**
Term	Definition
IPR034553	TOM5_viridi

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005742	mitochondrial outer membrane translocase complex
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg22785-RA	Carg22785-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR034553	Mitochondrial import receptor subunit TOM5 homologue, viridiplantae	PANTHER	PTHR37251	FAMILY NOT NAMED	coord: 20..69

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg22785	Csa1G039240	Cucumber (Chinese Long) v2	carcuB0542
Carg22785	MELO3C002035	Melon (DHL92) v3.5.1	carmeB0516
Carg22785	ClCG04G011750	Watermelon (Charleston Gray)	carwcgB0498
Carg22785	CSPI01G06180	Wild cucumber (PI 183967)	carcpiB0549
Carg22785	Cucsa.113270	Cucumber (Gy14) v1	carcgyB0588
Carg22785	CmaCh18G000020	Cucurbita maxima (Rimu)	carcmaB0722
Carg22785	CmaCh13G010710	Cucurbita maxima (Rimu)	carcmaB0721
Carg22785	CmoCh13G011170	Cucurbita moschata (Rifu)	carcmoB0698
Carg22785	CmoCh18G000020	Cucurbita moschata (Rifu)	carcmoB0699
Carg22785	Lsi02G001210	Bottle gourd (USVL1VR-Ls)	carlsiB467
Carg22785	Cp4.1LG20g00820	Cucurbita pepo (Zucchini)	carcpeB0725
Carg22785	Cp4.1LG09g11680	Cucurbita pepo (Zucchini)	carcpeB0722
Carg22785	CsGy1G005890	Cucumber (Gy14) v2	carcgybB0518
Carg22785	MELO3C002035.2	Melon (DHL92) v3.6.1	carmedB0522
Carg22785	CsaV3_1G006040	Cucumber (Chinese Long) v3	carcucB0548
Carg22785	Cla97C04G078600	Watermelon (97103) v2	carwmbB0536
Carg22785	Bhi08G000910	Wax gourd	carwgoB0625

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg22785	Carg04764	Silver-seed gourd	carcarB413

The following block(s) are covering this gene:


Gene	Organism	Block
Carg22785	Cucumber (Gy14) v2	carcgybB0517
Carg22785	Wild cucumber (PI 183967)	carcpiB0547
Carg22785	Cucumber (Chinese Long) v2	carcuB0540
Carg22785	Cucumber (Chinese Long) v3	carcucB0546