Cp4.1LG09g07860 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG09g07860
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionRho termination factor
LocationCp4.1LG09 : 7412961 .. 7415478 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATATGATTGAATGTATTGACAGCTTCACTACAAAGCCATACATCTGATATCCATGATTGAATGTATTGACAGCTTCACTACAAAGCCATACATCTGATATCCATCTATCACCACTGTCCATGAGACAAGGTCCTTGTCGGGTTGAAATTCTGGGAGATTGCAAAGAAGCTCCATGGCATTTTTAAGATCACCCACTTCACAAAACTCCATGCCTTTTCGAATTAGGTTTGACAAAGATGAAAGAACGCCGAAATTTCAAGCTCACTAAGCCAAGATGATAGTGCCCTGCCGGCGATATCCAGAACATCGGAGGGGTTCTGCTATCAGTACCATCATTTGCCGCAAATCCCAGTAAGAAACGGAAAAAACGGTGATGAATTTCAGCTATTAAACAAATAGCGGTAGCAATAATGGCGACAAATCAAAAGAAACGACGAACACTGAGATAGCCACGTGGGAGCACGAGATTCAGAAGCTTGTGGGCAGCCCACGTTATAACACACCCATACATTACACCTTGTGGATCAGATCCAGTTTGAACATTCATAGAATTCCATTTTTCTGGGAAAAATCAGATGGAAGCAGTAGTTTTCCAGTCTCGAACCCTAATCCGTTTCCCCAATTTGGTCTCTTTCACAAGGAGGAGACCCATTTTCACTTTGAAAGGTATGAATCTCCACATTTTATCAGATTCCCAGAAAAACCCATCTAGAATTCTTTTGTATTTCACGAGCTGAGGGATTAATTTTTATGCAGCTTGTTGAATTTGGCAGAGATTGCAGATGGGTATCGTAGCAAGAACATTCAATTGGCTGTTTCAAGCAATGGAAACGATGGAAAAACAGGGCATCAGCCTGTTCGTAGAAGCTCTGCGCCTGGAAGAACAAGGAAGAATGTGCCATCCTTGAGAAAAACAGATACCCATAAGAATGAAGACATGAAAAAACCCAAATCAAATAACCAGGAGGAAATAATTGCTCTCTTTAGGAAGATACAGACTTCCATTGCTGAGGAAGCTGCAAGCTCCATTGATGAAGATTCTAACAAGGATGAAGATGGAACTGAGTCTATTTTGGAGGCTCTTACTGAATCAAGGAAGCAAGTAAAAGGTAATTTCTTGATTGTCTCATCTGGTGCATTCGTGAGAAATTTGCCCCACCTTTGAATCCATCATTGCATCTTGCAAGAACTAAAGTCATTAACATAAACATCTCTTTCATGGTATACAAGAAGCAAGGAAAGAACCTTGATGATAAGTTACCAATATGGCTCCTGAACCATTGTTGTAAGTTGTCATGAAGTATAGGTTCATGCATCTTCGGTTTAAGATTGTTGGGAGTGAGTCCCACATTGGTTAATTTAGGGAATGATCATGAGTTTATAAGTAAAGGAATACATCTTCATTGGAATGAGGCTTTTTGGTGGAATGAGGCTTTTTGGAGAAACCAAAAGCAAAGCCATGGGAACTTATACTCAAAGTGGACAATATCATACCATTGTGATGAGTCGTAATTTCTAACATGGTATCAGAGTCATGCCCTTAACTTAGCCAATGTCAATAGAATCCTGAAATGTCGAACAAAAAAGTTGTGAGCCTCGATGGTATAGTCAAAAGTGACTCAAATGTCAAGCAAAGGGTGTACTTTGTTCGAGGGGAGAATTGTTGAAGAATACATCTCCATTGGTATATTGGGGAAGCCCAAAGCAGAGTCATGAGAGGTTATGCTCAAAGTGGACAATATCATACCCCATTGTGGAGAGTCATGATTCCTAACATCTCTTGTGCATGTATTGGCATTTAGTTGGTTCATAACTCTCATTTATTTGGTTCATAACCCTTTTGGTTCATCTTCCATTTTGATACACGAATCATCTTGATTCATGTATGACATTAACGTTTCTATGTCATATAAAGGGTTGTCTAGGATGGTTGAGATGCGTAGAGTTTGTTTGTTTGAGTGTCACTTTGTATTTGTTGAGTGACATTTAGGAAGAACTTTGTCGAGAGACTTTGTAGTGTGAGAGTGTAAGATATACACTTCGTAAACACTTTGATTATAGAGATTGGTAGCTACCCGTGGATATAGGGAAATTTCTTTTCTCCGAATCAAGTAAATCTTTGTGTCTCTTTGTTTAACTTCTGTTAGTAGGTGTGTGAGTGCGATCGTTCTCACTTCCGCTTTTTCGTTACAACAAAAGTATCGTGTTCCGACTGACTCTATGACTGAATGGATGTGCATTATAACTTGTATGGACAGGCAAAACTTTAAAGAATGCAGGAGGAGTTAAAGGGTTAAGAAGAAAAGGCACATCTGAAGCTGCTGCAGAATTCAAGTTAGTACGGCCACCGTCTAACTTTGTGAAGAGATCACCAATCCCATCTCCGGCAGGAGGAAATGGTTCGCATCTTACAGTGGAGAATATGAAACTTAGGGAGCTGAAAGCAGTTGCAAAGTCTAGAGGAATTAAGGGTTACTCCAAGTTGAAGAAAAATGAGCTGCTGGAACTGCTGACATCT

mRNA sequence

ATATGATTGAATGTATTGACAGCTTCACTACAAAGCCATACATCTGATATCCATGATTGAATGTATTGACAGCTTCACTACAAAGCCATACATCTGATATCCATCTATCACCACTGTCCATGAGACAAGGTCCTTGTCGGGTTGAAATTCTGGGAGATTGCAAAGAAGCTCCATGGCATTTTTAAGATCACCCACTTCACAAAACTCCATGCCTTTTCGAATTAGGTTTGACAAAGATGAAAGAACGCCGAAATTTCAAGCTCACTAAGCCAAGATGATAGTGCCCTGCCGGCGATATCCAGAACATCGGAGGGGTTCTGCTATCAGTACCATCATTTGCCGCAAATCCCAGTAAGAAACGGAAAAAACGGTGATGAATTTCAGCTATTAAACAAATAGCGGTAGCAATAATGGCGACAAATCAAAAGAAACGACGAACACTGAGATAGCCACGTGGGAGCACGAGATTCAGAAGCTTGTGGGCAGCCCACGTTATAACACACCCATACATTACACCTTGTGGATCAGATCCAGTTTGAACATTCATAGAATTCCATTTTTCTGGGAAAAATCAGATGGAAGCAGTAGTTTTCCAGTCTCGAACCCTAATCCGTTTCCCCAATTTGGTCTCTTTCACAAGGAGGAGACCCATTTTCACTTTGAAAGCTTGTTGAATTTGGCAGAGATTGCAGATGGGTATCGTAGCAAGAACATTCAATTGGCTGTTTCAAGCAATGGAAACGATGGAAAAACAGGGCATCAGCCTGTTCGTAGAAGCTCTGCGCCTGGAAGAACAAGGAAGAATGTGCCATCCTTGAGAAAAACAGATACCCATAAGAATGAAGACATGAAAAAACCCAAATCAAATAACCAGGAGGAAATAATTGCTCTCTTTAGGAAGATACAGACTTCCATTGCTGAGGAAGCTGCAAGCTCCATTGATGAAGATTCTAACAAGGATGAAGATGGAACTGAGTCTATTTTGGAGGCTCTTACTGAATCAAGGAAGCAAGTAAAAGGAGGAGTTAAAGGGTTAAGAAGAAAAGGCACATCTGAAGCTGCTGCAGAATTCAAGTTAGTACGGCCACCGTCTAACTTTGTGAAGAGATCACCAATCCCATCTCCGGCAGGAGGAAATGGTTCGCATCTTACAGTGGAGAATATGAAACTTAGGGAGCTGAAAGCAGTTGCAAAGTCTAGAGGAATTAAGGGTTACTCCAAGTTGAAGAAAAATGAGCTGCTGGAACTGCTGACATCT

Coding sequence (CDS)

ATGAAAAAACCCAAATCAAATAACCAGGAGGAAATAATTGCTCTCTTTAGGAAGATACAGACTTCCATTGCTGAGGAAGCTGCAAGCTCCATTGATGAAGATTCTAACAAGGATGAAGATGGAACTGAGTCTATTTTGGAGGCTCTTACTGAATCAAGGAAGCAAGTAAAAGGAGGAGTTAAAGGGTTAAGAAGAAAAGGCACATCTGAAGCTGCTGCAGAATTCAAGTTAGTACGGCCACCGTCTAACTTTGTGAAGAGATCACCAATCCCATCTCCGGCAGGAGGAAATGGTTCGCATCTTACAGTGGAGAATATGAAACTTAGGGAGCTGAAAGCAGTTGCAAAGTCTAGAGGAATTAAGGGTTACTCCAAGTTGAAGAAAAATGAGCTGCTGGAACTGCTGACATCT

Protein sequence

MKKPKSNNQEEIIALFRKIQTSIAEEAASSIDEDSNKDEDGTESILEALTESRKQVKGGVKGLRRKGTSEAAAEFKLVRPPSNFVKRSPIPSPAGGNGSHLTVENMKLRELKAVAKSRGIKGYSKLKKNELLELLTS
Homology
[Close]
BLAST of Cp4.1LG09g07860 vs. TrEMBL
Match: A0A0A0LX66_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G470300 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 6.2e-34
Identity = 99/161 (61.49%), Postives = 114/161 (70.81%), Query Frame = 1 

Query: 1   MKKPKSNNQEEIIALFRKIQTSIAEEAASSIDEDSNKDEDGTESILEALTESRKQVKG-- 60
           +KK ++N+QEE+IALFRKIQTSIA+E+ASSIDE+S KDE+   SILE L ESRKQ+KG  
Sbjct: 86  VKKSETNDQEEVIALFRKIQTSIAKESASSIDEESRKDENA--SILETLRESRKQLKGKT 145

Query: 61  ----GVKGLRRKGTSE----------AAAEFKLVRPPSNFVKRSPIP-----SPAGGNGS 120
               G K LR KG SE           AA+FKLVRPPS FVKRSPIP     S A     
Sbjct: 146 SKKAGAKVLRSKGKSEEKEMHDPSPPPAADFKLVRPPSKFVKRSPIPLKVDASQAIAESR 205

Query: 121 HL---TVENMKLRELKAVAKSRGIKGYSKLKKNELLELLTS 138
            L   + ENMKL ELKA+AKSRGIKGYSKLKKNEL+E+L S
Sbjct: 206 ELKFPSTENMKLTELKALAKSRGIKGYSKLKKNELMEILRS 244

[Close]
BLAST of Cp4.1LG09g07860 vs. TrEMBL
Match: D7TJN8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_10s0003g01530 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.6e-21
Identity = 77/172 (44.77%), Postives = 100/172 (58.14%), Query Frame = 1 

Query: 2   KKPKSNNQEEIIALFRKIQTSIAEEAASSIDE---DSNKDEDGTESILEALTESRKQVKG 61
           K  +S+NQ+EIIALFR+IQ+SI++  +    +   DS+ D+   ES+LE L +SRKQVKG
Sbjct: 91  KLSESSNQDEIIALFRRIQSSISKGESLGTKKRISDSSVDKTSAESVLEILRQSRKQVKG 150

Query: 62  -------GVKGLRRKGT---------SEAAAEFKLVRPPSNFVKRSPIPSPAGGNGSHLT 121
                  G    +R+G           +  A+ K  RPPSNFVKRSPIPSP    G  + 
Sbjct: 151 RPSKKEGGQVLTQRRGVPKKDQGIPDKQYVADLKSARPPSNFVKRSPIPSPTNPRGKAVK 210

Query: 122 -----------------VENMKLRELKAVAKSRGIKGYSKLKKNELLELLTS 138
                            VE MK+ ELK +AKSRGIKGYSK+KK+EL+ELL S
Sbjct: 211 LKNEVSVRTTSFNELPKVEEMKVTELKELAKSRGIKGYSKMKKSELVELLRS 262

[Close]
BLAST of Cp4.1LG09g07860 vs. TrEMBL
Match: A0A059CCK0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D00477 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 2.1e-21
Identity = 77/169 (45.56%), Postives = 99/169 (58.58%), Query Frame = 1 

Query: 6   SNNQEEIIALFRKIQTSIAEEAASSIDE--DSNKDEDGTESILEALTESRKQ------VK 65
           S  QEEII+LFR+IQ+SI+ E+ S+  E  D N+D+   ES+LE +  SRKQ      +K
Sbjct: 85  SVKQEEIISLFRRIQSSISNESVSTEKEGTDPNQDKPAAESVLEIIRRSRKQAKEKVSLK 144

Query: 66  GGVKGLRRKGT-----------SEAAAEFKLVRPPSNFVKRSPIPSP------------- 125
           GG K   R+ +           S    + KL RPPSNFVK+SPIP P             
Sbjct: 145 GGNKQKPRRRSFPKKEEDEEHISSPVTDIKLTRPPSNFVKKSPIPFPSAPKGKEGQWKEA 204

Query: 126 ----AGGNGS-HLTVENMKLRELKAVAKSRGIKGYSKLKKNELLELLTS 138
               AG N S    +E MKL+ELK +AKSRG++GYS+LKKNEL+ELL S
Sbjct: 205 SPASAGSNDSTSRKIEEMKLQELKELAKSRGVRGYSRLKKNELVELLRS 253

[Close]
BLAST of Cp4.1LG09g07860 vs. TrEMBL
Match: M5WLJ9_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa023922mg PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 3.6e-21
Identity = 80/160 (50.00%), Postives = 103/160 (64.38%), Query Frame = 1 

Query: 6   SNNQEEIIALFRKIQTSIAEEA---ASSIDEDSNKDEDGTESILEALTESRKQV-----K 65
           +++QEEII+LFR+IQTSI+ +    A  I+ + ++D   +ESIL+AL  SRKQ      K
Sbjct: 1   ASDQEEIISLFRRIQTSISNKESVNAKKINSNVSEDSPSSESILQALYGSRKQKGKALDK 60

Query: 66  GGVK-GLRRKGTSE-------AAAEFKLVRPPSNFVKRSPIPS---PAG-----GNGSHL 125
            G +   RRK T E       + AEFKL RPPS FVKRSPIPS   P G      NG+  
Sbjct: 61  AGQEVWTRRKDTQEQQIQEDPSVAEFKLTRPPSKFVKRSPIPSQSIPRGQVLELNNGASS 120

Query: 126 T----VENMKLRELKAVAKSRGIKGYSKLKKNELLELLTS 138
           +    +E MKL ELK +AK+RGIKGYSKLKK+EL++LL S
Sbjct: 121 SAAGRIEEMKLPELKELAKTRGIKGYSKLKKSELVQLLKS 160

[Close]
BLAST of Cp4.1LG09g07860 vs. TrEMBL
Match: W9RDJ5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_005809 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 6.1e-21
Identity = 80/171 (46.78%), Postives = 102/171 (59.65%), Query Frame = 1 

Query: 2   KKPKSNNQEEIIALFRKIQTSIAEEAA---SSIDEDSNKDEDGTESILEALTESRKQVKG 61
           KKP S NQEEIIALFR+IQ+SI++E +     I+ D+++++   ESIL+ L  S KQ K 
Sbjct: 86  KKPNSANQEEIIALFRRIQSSISKEKSVNDKKINADASEEKSSVESILKVLRRSGKQGKA 145

Query: 62  GVK-----GLRRK----------GTSEAAAEFKLVR-PPSNFVKRSPIPSP--------- 121
            ++      +R++          G++ A    KL R PPSNFVKRSPIPSP         
Sbjct: 146 KIEEGKKISMRKRVVPKKDQELEGSTPAVTGSKLSRRPPSNFVKRSPIPSPTIPRSISLE 205

Query: 122 --------AGGNGSHLT-VENMKLRELKAVAKSRGIKGYSKLKKNELLELL 136
                   A   G HL  VE MKL ELK +AKSRGIKGYS+LKK+ELL LL
Sbjct: 206 LNSKQSTAAEEEGLHLPKVEEMKLAELKELAKSRGIKGYSRLKKSELLSLL 256

[Close]
BLAST of Cp4.1LG09g07860 vs. TAIR10
Match: AT4G18740.1 (AT4G18740.1 Rho termination factor)

HSP 1 Score: 99.8 bits (247), Expect = 1.4e-21
Identity = 66/159 (41.51%), Postives = 94/159 (59.12%), Query Frame = 1 

Query: 4   PKSNNQEEIIALFRKIQTSIAEEAASSIDEDSNKDEDG-----TESILEALTESRKQVKG 63
           P  +NQEEII+L ++IQ+SI++  +  ++E+ N DE       T++IL+ L +SRK+ +G
Sbjct: 90  PSKSNQEEIISLLKRIQSSISKGESRGVEEEKNSDESSKEKPLTKAILDVLEKSRKKTEG 149

Query: 64  GVKGLRRKGTSEAAAEFKLVRPPSNFVKRSPIPSPAGGNGSHLTVEN------------- 123
               ++ K       + +L RPPS+FVKR+P+ S A G    L V N             
Sbjct: 150 DTS-VKEKPPKR---QVELPRPPSSFVKRTPLSSSASGPRGKLPVSNSDKALGKLTKKEE 209

Query: 124 -------MKLRELKAVAKSRGIKGYSKLKKNELLELLTS 138
                  MKL ELK VAK+RGIKGYSKL+K+ELLEL+ S
Sbjct: 210 KASLIETMKLAELKEVAKNRGIKGYSKLRKSELLELIRS 244

[Close]
BLAST of Cp4.1LG09g07860 vs. NCBI nr
Match: gi|659068857|ref|XP_008446702.1| (PREDICTED: SAP-like protein BP-73 [Cucumis melo])

HSP 1 Score: 157.1 bits (396), Expect = 2.1e-35
Identity = 100/161 (62.11%), Postives = 113/161 (70.19%), Query Frame = 1 

Query: 1   MKKPKSNNQEEIIALFRKIQTSIAEEAASSIDEDSNKDEDGTESILEALTESRKQVKG-- 60
           +KK K N+QEEIIALFRKIQ SIA+E+ASSIDE+S+KDE G  SILE L E RKQ+KG  
Sbjct: 114 IKKSKPNDQEEIIALFRKIQASIAKESASSIDEESHKDEHGATSILETLREPRKQLKGKT 173

Query: 61  ----GVKGLRRKGTSE----------AAAEFKLVRPPSNFVKRSPIP-----SPAGGNGS 120
               G K  R KGTSE           AA+FKLVRPPS FVKRSPIP     S A     
Sbjct: 174 SKKAGAKVFRSKGTSEEKEMHDPSPPPAADFKLVRPPSKFVKRSPIPPKVDASQAIAESR 233

Query: 121 HL---TVENMKLRELKAVAKSRGIKGYSKLKKNELLELLTS 138
            L   ++ENMKL ELKA+AKSRGIKGYSKLKKNEL+E+L S
Sbjct: 234 ELKFPSIENMKLAELKALAKSRGIKGYSKLKKNELMEILRS 274

[Close]
BLAST of Cp4.1LG09g07860 vs. NCBI nr
Match: gi|778665168|ref|XP_011648505.1| (PREDICTED: uncharacterized protein LOC105434499, partial [Cucumis sativus])

HSP 1 Score: 151.8 bits (382), Expect = 9.0e-34
Identity = 99/161 (61.49%), Postives = 114/161 (70.81%), Query Frame = 1 

Query: 1   MKKPKSNNQEEIIALFRKIQTSIAEEAASSIDEDSNKDEDGTESILEALTESRKQVKG-- 60
           +KK ++N+QEE+IALFRKIQTSIA+E+ASSIDE+S KDE+   SILE L ESRKQ+KG  
Sbjct: 107 VKKSETNDQEEVIALFRKIQTSIAKESASSIDEESRKDENA--SILETLRESRKQLKGKT 166

Query: 61  ----GVKGLRRKGTSE----------AAAEFKLVRPPSNFVKRSPIP-----SPAGGNGS 120
               G K LR KG SE           AA+FKLVRPPS FVKRSPIP     S A     
Sbjct: 167 SKKAGAKVLRSKGKSEEKEMHDPSPPPAADFKLVRPPSKFVKRSPIPLKVDASQAIAESR 226

Query: 121 HL---TVENMKLRELKAVAKSRGIKGYSKLKKNELLELLTS 138
            L   + ENMKL ELKA+AKSRGIKGYSKLKKNEL+E+L S
Sbjct: 227 ELKFPSTENMKLTELKALAKSRGIKGYSKLKKNELMEILRS 265

[Close]
BLAST of Cp4.1LG09g07860 vs. NCBI nr
Match: gi|700210518|gb|KGN65614.1| (hypothetical protein Csa_1G470300 [Cucumis sativus])

HSP 1 Score: 151.8 bits (382), Expect = 9.0e-34
Identity = 99/161 (61.49%), Postives = 114/161 (70.81%), Query Frame = 1 

Query: 1   MKKPKSNNQEEIIALFRKIQTSIAEEAASSIDEDSNKDEDGTESILEALTESRKQVKG-- 60
           +KK ++N+QEE+IALFRKIQTSIA+E+ASSIDE+S KDE+   SILE L ESRKQ+KG  
Sbjct: 86  VKKSETNDQEEVIALFRKIQTSIAKESASSIDEESRKDENA--SILETLRESRKQLKGKT 145

Query: 61  ----GVKGLRRKGTSE----------AAAEFKLVRPPSNFVKRSPIP-----SPAGGNGS 120
               G K LR KG SE           AA+FKLVRPPS FVKRSPIP     S A     
Sbjct: 146 SKKAGAKVLRSKGKSEEKEMHDPSPPPAADFKLVRPPSKFVKRSPIPLKVDASQAIAESR 205

Query: 121 HL---TVENMKLRELKAVAKSRGIKGYSKLKKNELLELLTS 138
            L   + ENMKL ELKA+AKSRGIKGYSKLKKNEL+E+L S
Sbjct: 206 ELKFPSTENMKLTELKALAKSRGIKGYSKLKKNELMEILRS 244

[Close]
BLAST of Cp4.1LG09g07860 vs. NCBI nr
Match: gi|645237682|ref|XP_008225320.1| (PREDICTED: uncharacterized protein LOC103324974 [Prunus mume])

HSP 1 Score: 115.9 bits (289), Expect = 5.4e-23
Identity = 86/164 (52.44%), Postives = 109/164 (66.46%), Query Frame = 1 

Query: 2   KKPKSNNQEEIIALFRKIQTSIA-EEAASSIDEDSNKDEDG--TESILEALTESRKQV-- 61
           KK K+++QEEII+LFR+IQTSI+ EE+ ++  ++SN  ED   +ESIL+AL  SRKQ   
Sbjct: 86  KKSKASDQEEIISLFRRIQTSISNEESVNAKKKNSNVSEDSPSSESILQALYGSRKQKGK 145

Query: 62  ---KGGVK-GLRRKGTSE-------AAAEFKLVRPPSNFVKRSPIPS---PAG-----GN 121
              K G +   RRK T E       + AEFKL RPPS FVKRSPIPS   P G      N
Sbjct: 146 ALDKAGQEVWTRRKATQEQQIQEDPSVAEFKLTRPPSKFVKRSPIPSQSIPRGQVLELNN 205

Query: 122 GSHLT----VENMKLRELKAVAKSRGIKGYSKLKKNELLELLTS 138
           G+  +    +E MKL ELK +AK+RGIKGYSKLKK+EL++LL S
Sbjct: 206 GASSSAAGRIEEMKLPELKELAKTRGIKGYSKLKKSELVQLLKS 249

[Close]
BLAST of Cp4.1LG09g07860 vs. NCBI nr
Match: gi|731404749|ref|XP_010655541.1| (PREDICTED: SAP-like protein BP-73 isoform X2 [Vitis vinifera])

HSP 1 Score: 110.5 bits (275), Expect = 2.3e-21
Identity = 77/172 (44.77%), Postives = 100/172 (58.14%), Query Frame = 1 

Query: 2   KKPKSNNQEEIIALFRKIQTSIAEEAASSIDE---DSNKDEDGTESILEALTESRKQVKG 61
           K  +S+NQ+EIIALFR+IQ+SI++  +    +   DS+ D+   ES+LE L +SRKQVKG
Sbjct: 66  KLSESSNQDEIIALFRRIQSSISKGESLGTKKRISDSSVDKTSAESVLEILRQSRKQVKG 125

Query: 62  -------GVKGLRRKGT---------SEAAAEFKLVRPPSNFVKRSPIPSPAGGNGSHLT 121
                  G    +R+G           +  A+ K  RPPSNFVKRSPIPSP    G  + 
Sbjct: 126 RPSKKEGGQVLTQRRGVPKKDQGIPDKQYVADLKSARPPSNFVKRSPIPSPTNPRGKAVK 185

Query: 122 -----------------VENMKLRELKAVAKSRGIKGYSKLKKNELLELLTS 138
                            VE MK+ ELK +AKSRGIKGYSK+KK+EL+ELL S
Sbjct: 186 LKNEVSVRTTSFNELPKVEEMKVTELKELAKSRGIKGYSKMKKSELVELLRS 237

The following BLAST results are available for this feature:
BLAST of Cp4.1LG09g07860 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG09g07860 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LX66_CUCSA6.2e-3461.49Uncharacterized protein OS=Cucumis sativus GN=Csa_1G470300 PE=4 SV=1[more]
D7TJN8_VITVI1.6e-2144.77Putative uncharacterized protein OS=Vitis vinifera GN=VIT_10s0003g01530 PE=4 SV=... [more]
A0A059CCK0_EUCGR2.1e-2145.56Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D00477 PE=4 SV=1[more]
M5WLJ9_PRUPE3.6e-2150.00Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa023922mg PE=4 S... [more]
W9RDJ5_9ROSA6.1e-2146.78Uncharacterized protein OS=Morus notabilis GN=L484_005809 PE=4 SV=1[more]
BLAST of Cp4.1LG09g07860 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G18740.11.4e-2141.51 Rho termination factor[more]
BLAST of Cp4.1LG09g07860 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659068857|ref|XP_008446702.1|2.1e-3562.11PREDICTED: SAP-like protein BP-73 [Cucumis melo][more]
gi|778665168|ref|XP_011648505.1|9.0e-3461.49PREDICTED: uncharacterized protein LOC105434499, partial [Cucumis sativus][more]
gi|700210518|gb|KGN65614.1|9.0e-3461.49hypothetical protein Csa_1G470300 [Cucumis sativus][more]
gi|645237682|ref|XP_008225320.1|5.4e-2352.44PREDICTED: uncharacterized protein LOC103324974 [Prunus mume][more]
gi|731404749|ref|XP_010655541.1|2.3e-2144.77PREDICTED: SAP-like protein BP-73 isoform X2 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006353DNA-templated transcription, termination
Vocabulary: INTERPRO
TermDefinition
IPR011112Rho_N
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006353 DNA-templated transcription, termination
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG09g07860.1Cp4.1LG09g07860.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011112Rho termination factor, N-terminalPFAMPF07498Rho_Ncoord: 104..132
score: 2.
NoneNo IPR availableGENE3DG3DSA:1.10.720.10coord: 104..131
score: 1.
NoneNo IPR availablePANTHERPTHR34449FAMILY NOT NAMEDcoord: 2..137
score: 1.0
NoneNo IPR availablePANTHERPTHR34449:SF1RHO TERMINATION FACTORcoord: 2..137
score: 1.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG09g07860Cucsa.212950Cucumber (Gy14) v1cgycpeB0585
Cp4.1LG09g07860CmaCh18G004250Cucurbita maxima (Rimu)cmacpeB415
Cp4.1LG09g07860CmoCh18G004040Cucurbita moschata (Rifu)cmocpeB377
Cp4.1LG09g07860Cla019653Watermelon (97103) v1cpewmB024
Cp4.1LG09g07860Csa1G470300Cucumber (Chinese Long) v2cpecuB019
Cp4.1LG09g07860MELO3C002669Melon (DHL92) v3.5.1cpemeB026
Cp4.1LG09g07860ClCG03G007530Watermelon (Charleston Gray)cpewcgB035
Cp4.1LG09g07860CSPI01G21960Wild cucumber (PI 183967)cpecpiB016
Cp4.1LG09g07860Lsi02G008240Bottle gourd (USVL1VR-Ls)cpelsiB026
Cp4.1LG09g07860MELO3C002669.2Melon (DHL92) v3.6.1cpemedB031
Cp4.1LG09g07860CsaV3_1G033180Cucumber (Chinese Long) v3cpecucB0019
Cp4.1LG09g07860Bhi08G001780Wax gourdcpewgoB0039
Cp4.1LG09g07860CsGy1G021620Cucumber (Gy14) v2cgybcpeB006
Cp4.1LG09g07860Carg14572Silver-seed gourdcarcpeB0211
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG09g07860Cucurbita maxima (Rimu)cmacpeB212
Cp4.1LG09g07860Cucurbita maxima (Rimu)cmacpeB653
Cp4.1LG09g07860Cucurbita maxima (Rimu)cmacpeB860
Cp4.1LG09g07860Cucurbita moschata (Rifu)cmocpeB182
Cp4.1LG09g07860Cucurbita moschata (Rifu)cmocpeB603
Cp4.1LG09g07860Cucurbita moschata (Rifu)cmocpeB800
Cp4.1LG09g07860Wild cucumber (PI 183967)cpecpiB046
Cp4.1LG09g07860Cucumber (Chinese Long) v2cpecuB051
Cp4.1LG09g07860Bottle gourd (USVL1VR-Ls)cpelsiB021
Cp4.1LG09g07860Watermelon (Charleston Gray)cpewcgB027
Cp4.1LG09g07860Watermelon (97103) v1cpewmB039
Cp4.1LG09g07860Watermelon (97103) v1cpewmB054
Cp4.1LG09g07860Melon (DHL92) v3.5.1cpemeB044
Cp4.1LG09g07860Cucumber (Gy14) v2cgybcpeB706
Cp4.1LG09g07860Melon (DHL92) v3.6.1cpemedB052
Cp4.1LG09g07860Silver-seed gourdcarcpeB0771
Cp4.1LG09g07860Silver-seed gourdcarcpeB1119
Cp4.1LG09g07860Silver-seed gourdcarcpeB1324
Cp4.1LG09g07860Cucumber (Chinese Long) v3cpecucB0054
Cp4.1LG09g07860Cucurbita pepo (Zucchini)cpecpeB018
Cp4.1LG09g07860Cucurbita pepo (Zucchini)cpecpeB025
Cp4.1LG09g07860Cucurbita pepo (Zucchini)cpecpeB043
Cp4.1LG09g07860Cucurbita pepo (Zucchini)cpecpeB048
Cp4.1LG09g07860Cucumber (Gy14) v1cgycpeB0030