Cla019653 (gene) Watermelon (97103) v1

Overview
NameCla019653
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionRho termination factor (AHRD V1 *--* F4JRN0_ARATH); contains Interpro domain(s) IPR011112 Rho termination factor, N-terminal
LocationChr3 : 8084647 .. 8085901 (+)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGCAATAGTTTTCCAGCCTCGGATTCTAAACCGCTTTCCCAATTTGGTCTCTTTGGGAAGGAGACCCACGTTCGCTTCGAAAGGTATCGAGCTTGAAACTCCCAAGAACCAGTCTTGAATTTCGCAAATCTGTTGTTTGTCCATATCATTCAGCTTTGTCTGCTGTATTTGAAGTGAACAATCTATTTTTGTTGTCATCACTTTTTATTGCAGAATTTGTAGATCTTGTGTACTTCACTAGCTGAGGGATTAATTTTTGATGCAGCTTGTTAAATTTGGCAGACATTGCAGATGTTTATCCCATTAAGAGCATTAAATTATCTGTTACGAACAATAGGCCAGATGGAAATGGAGGGAATCGGCCTCCTCGTAGAAACTCTGCGCCAGGAAAAACGAGGAAGAATGAAGTTTCTTCGAGGAAAACAGAAGCCCATAAGAATGAGGAAGACCTAAAAGAATCAAAATACAATAACCAGGAAGAAATAATTGCTCTCTTCAGAAAGATTCAGACTTCCATTGCTAAGGAATCCGCAAGCTCCAATGATGAAGAATCCTGCAAGGATGAACATGGAGCCGAGTCTATTTTAGAGACTCTTCGTGAATCAAGGAAGCAGGTGAAAGGTAATTTCTTGATTGTCTCGTCTGACGCTTTTGTGGGAAATTTGGTCCACTTTTAAATCCATGAATGCATCTCGCAAGAACTAAAATTTATAATTTATAAACATCTCAATTAATTGGCAATGTGATTCAATTCCCGAACCAACATACACATCAAACAAATACATTTAGCAGCATTGTTATGACCTTGTGAAATAATAGTATGGCGACACTTCCAAGTGAATATACATCGTCACAAGCTATGATAAAAAGTTTCTATCTCGTATCTTTACTAAATAATAGAGCTATGGACAGGCAAAACTTCAAAGAAGGTAGGAGCTAAAGCGTTGAGAAGTAAAGGCACGTCTGAAGGGAAGGAAATGCATGATACTTCGCCACCAGTTGCAGATTTCAAGTTGGTTCGACCACCCTCTAAATTTGTGAAGAGATCGCCAATCCCATCTCCCCAACGAGGACGTGGTTCGCATCTTAGAGTTGATGCATCTCAGGCCATAGCTGAAAGCAGGGAGTTGAAGGTCCCAAGTATAGAGAATATGAAACTTACCGAGCTGAAAGCACTAGCAAAATCTAGAGGAATTAAGGGTTACTCCAAATTGAAGAAAAATGAGCTAATTGAACTCCTGGGATCCTAA

mRNA sequence

ATGGAAGCAATAGTTTTCCAGCCTCGGATTCTAAACCGCTTTCCCAATTTGGTCTCTTTGGGAAGGAGACCCACGTTCGCTTCGAAAGGTATCGAGCTTGAAACTCCCAAGAACCACTTGTTAAATTTGGCAGACATTGCAGATGTTTATCCCATTAAGAGCATTAAATTATCTGTTACGAACAATAGGCCAGATGGAAATGGAGGGAATCGGCCTCCTCGTAGAAACTCTGCGCCAGGAAAAACGAGGAAGAATGAAGTTTCTTCGAGGAAAACAGAAGCCCATAAGAATGAGGAAGACCTAAAAGAATCAAAATACAATAACCAGGAAGAAATAATTGCTCTCTTCAGAAAGATTCAGACTTCCATTGCTAAGGAATCCGCAAGCTCCAATGATGAAGAATCCTGCAAGGATGAACATGGAGCCGAGTCTATTTTAGAGACTCTTCGTGAATCAAGGAAGCAGGTGAAAGAGCTATGGACAGGCAAAACTTCAAAGAAGGTAGGAGCTAAAGCGTTGAGAAGTAAAGGCACGTCTGAAGGGAAGGAAATGCATGATACTTCGCCACCAGTTGCAGATTTCAAGTTGGTTCGACCACCCTCTAAATTTGTGAAGAGATCGCCAATCCCATCTCCCCAACGAGGACGTGGTTCGCATCTTAGAGTTGATGCATCTCAGGCCATAGCTGAAAGCAGGGAGTTGAAGGTCCCAAGTATAGAGAATATGAAACTTACCGAGCTGAAAGCACTAGCAAAATCTAGAGGAATTAAGGGTTACTCCAAATTGAAGAAAAATGAGCTAATTGAACTCCTGGGATCCTAA

Coding sequence (CDS)

ATGGAAGCAATAGTTTTCCAGCCTCGGATTCTAAACCGCTTTCCCAATTTGGTCTCTTTGGGAAGGAGACCCACGTTCGCTTCGAAAGGTATCGAGCTTGAAACTCCCAAGAACCACTTGTTAAATTTGGCAGACATTGCAGATGTTTATCCCATTAAGAGCATTAAATTATCTGTTACGAACAATAGGCCAGATGGAAATGGAGGGAATCGGCCTCCTCGTAGAAACTCTGCGCCAGGAAAAACGAGGAAGAATGAAGTTTCTTCGAGGAAAACAGAAGCCCATAAGAATGAGGAAGACCTAAAAGAATCAAAATACAATAACCAGGAAGAAATAATTGCTCTCTTCAGAAAGATTCAGACTTCCATTGCTAAGGAATCCGCAAGCTCCAATGATGAAGAATCCTGCAAGGATGAACATGGAGCCGAGTCTATTTTAGAGACTCTTCGTGAATCAAGGAAGCAGGTGAAAGAGCTATGGACAGGCAAAACTTCAAAGAAGGTAGGAGCTAAAGCGTTGAGAAGTAAAGGCACGTCTGAAGGGAAGGAAATGCATGATACTTCGCCACCAGTTGCAGATTTCAAGTTGGTTCGACCACCCTCTAAATTTGTGAAGAGATCGCCAATCCCATCTCCCCAACGAGGACGTGGTTCGCATCTTAGAGTTGATGCATCTCAGGCCATAGCTGAAAGCAGGGAGTTGAAGGTCCCAAGTATAGAGAATATGAAACTTACCGAGCTGAAAGCACTAGCAAAATCTAGAGGAATTAAGGGTTACTCCAAATTGAAGAAAAATGAGCTAATTGAACTCCTGGGATCCTAA

Protein sequence

MEAIVFQPRILNRFPNLVSLGRRPTFASKGIELETPKNHLLNLADIADVYPIKSIKLSVTNNRPDGNGGNRPPRRNSAPGKTRKNEVSSRKTEAHKNEEDLKESKYNNQEEIIALFRKIQTSIAKESASSNDEESCKDEHGAESILETLRESRKQVKELWTGKTSKKVGAKALRSKGTSEGKEMHDTSPPVADFKLVRPPSKFVKRSPIPSPQRGRGSHLRVDASQAIAESRELKVPSIENMKLTELKALAKSRGIKGYSKLKKNELIELLGS
Homology
[Close]
BLAST of Cla019653 vs. Swiss-Prot
Match: BP73_ORYSJ (SAP-like protein BP-73 OS=Oryza sativa subsp. japonica GN=BP-73 PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.7e-07
Identity = 27/52 (51.92%), Postives = 34/52 (65.38%), Query Frame = 1 

Query: 222 VDASQAIAESRELKVPSIENMKLTELKALAKSRGIKGYSKLKKNELIELLGS 274
           +D S        L  P +  +K+TEL+ LAKSRGIKGYSK+KKN+L+ELL +
Sbjct: 322 IDESHDTTLKSSLGGPDLSTLKVTELRELAKSRGIKGYSKMKKNDLVELLSN 373

[Close]
BLAST of Cla019653 vs. Swiss-Prot
Match: RHON1_ARATH (Rho-N domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana GN=RHON1 PE=1 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.1e-06
Identity = 27/51 (52.94%), Postives = 34/51 (66.67%), Query Frame = 1 

Query: 223 DASQAIAESRELKVPSIENMKLTELKALAKSRGIKGYSKLKKNELIELLGS 274
           DA +   E+ E  V  +  +KL EL+ +AKSRG+KG SK+KK EL+ELLGS
Sbjct: 348 DADEDSDEAEEEAVKDLSELKLVELRGIAKSRGLKGLSKMKKAELVELLGS 398

[Close]
BLAST of Cla019653 vs. TrEMBL
Match: A0A0A0LX66_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G470300 PE=4 SV=1)

HSP 1 Score: 349.7 bits (896), Expect = 3.1e-93
Identity = 198/274 (72.26%), Postives = 217/274 (79.20%), Query Frame = 1 

Query: 1   MEAIVFQPRILNRFPNLVSLGRRPTFASKGIELETPKNHLLNLADIADVYPIKSIKLSVT 60
           MEA+VF PRIL RFPNL+SL RRPTFASK               D+ADVYP K+I+ SV+
Sbjct: 1   MEAVVFLPRILIRFPNLISLRRRPTFASK---------------DVADVYPSKNIQPSVS 60

Query: 61  NNRPDGNGGNRPPRRNSAPGKTRKNEVSSRKTEAHKNEEDLKESKYNNQEEIIALFRKIQ 120
            +RPDGN GNRPPRRNS PGK RK+E SSRKTE  K+EE +K+S+ N+QEE+IALFRKIQ
Sbjct: 61  KSRPDGNAGNRPPRRNSLPGKARKSESSSRKTETPKDEESVKKSETNDQEEVIALFRKIQ 120

Query: 121 TSIAKESASSNDEESCKDEHGAESILETLRESRKQVKELWTGKTSKKVGAKALRSKGTSE 180
           TSIAKESASS DEES KDE+   SILETLRESRKQ+K    GKTSKK GAK LRSKG SE
Sbjct: 121 TSIAKESASSIDEESRKDENA--SILETLRESRKQLK----GKTSKKAGAKVLRSKGKSE 180

Query: 181 GKEMHDTS-PPVADFKLVRPPSKFVKRSPIPSPQRGRGSHLRVDASQAIAESRELKVPSI 240
            KEMHD S PP ADFKLVRPPSKFVKRSPIP         L+VDASQAIAESRELK PS 
Sbjct: 181 EKEMHDPSPPPAADFKLVRPPSKFVKRSPIP---------LKVDASQAIAESRELKFPST 240

Query: 241 ENMKLTELKALAKSRGIKGYSKLKKNELIELLGS 274
           ENMKLTELKALAKSRGIKGYSKLKKNEL+E+L S
Sbjct: 241 ENMKLTELKALAKSRGIKGYSKLKKNELMEILRS 244

[Close]
BLAST of Cla019653 vs. TrEMBL
Match: D7TJN8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_10s0003g01530 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 4.4e-39
Identity = 111/277 (40.07%), Postives = 159/277 (57.40%), Query Frame = 1 

Query: 1   MEAIVFQPRILNRFPNLVSLGRRPTFASKGIELETPKNHLLNLADIADVYPIKSIKLSVT 60
           M A+VF      R  +  +  + P      + L+   +     A   D+ P     L+++
Sbjct: 1   MVAVVFCSHSALRLQSFYAFSK-PKLGKYAVSLQETADGFSPFASRRDLLP-----LTIS 60

Query: 61  NNRPDGNGGNRPPRRNSAPGKTRKNEVSSRKTEAHKNEEDLKESKYNNQEEIIALFRKIQ 120
           + + DGN   RPPR+N   G+T K + +     +     D K S+ +NQ+EIIALFR+IQ
Sbjct: 61  SIKSDGNRRGRPPRKNHISGRTEKGDKNKTPPSS-----DGKLSESSNQDEIIALFRRIQ 120

Query: 121 TSIAK-ESASSND--EESCKDEHGAESILETLRESRKQVKELWTGKTSKKVGAKAL-RSK 180
           +SI+K ES  +     +S  D+  AES+LE LR+SRKQVK    G+ SKK G + L + +
Sbjct: 121 SSISKGESLGTKKRISDSSVDKTSAESVLEILRQSRKQVK----GRPSKKEGGQVLTQRR 180

Query: 181 GTSEGKEMHDTSPPVADFKLVRPPSKFVKRSPIPSPQRGRGSHLRVDASQAIAESRELKV 240
           G  +  +       VAD K  RPPS FVKRSPIPSP   RG  +++    ++  +   ++
Sbjct: 181 GVPKKDQGIPDKQYVADLKSARPPSNFVKRSPIPSPTNPRGKAVKLKNEVSVRTTSFNEL 240

Query: 241 PSIENMKLTELKALAKSRGIKGYSKLKKNELIELLGS 274
           P +E MK+TELK LAKSRGIKGYSK+KK+EL+ELL S
Sbjct: 241 PKVEEMKVTELKELAKSRGIKGYSKMKKSELVELLRS 262

[Close]
BLAST of Cla019653 vs. TrEMBL
Match: B9I1I7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s07070g PE=4 SV=2)

HSP 1 Score: 165.6 bits (418), Expect = 8.3e-38
Identity = 104/244 (42.62%), Postives = 147/244 (60.25%), Query Frame = 1 

Query: 40  LLNLADIADVYPIKS-----IKLSVTNNRPDGNGGNRPPRRNSAPGKTRKNEVSSRKTEA 99
           LLNL +IAD     +     ++ SV++ + DG+   RPPR++SAPG+T K +  S+   +
Sbjct: 74  LLNLPEIADGSLAFASHNGVLQFSVSSIKSDGSSKGRPPRKSSAPGRTEKEDEDSKSQSS 133

Query: 100 HKNEEDLKESKYNNQEEIIALFRKIQTSIAK-ESASSNDEESCKDEHGA--ESILETLRE 159
                D K+   +NQ EI+ALFR+IQ+SI+K ES ++  +++ +    +   SILE LR 
Sbjct: 134 -----DRKQPMSSNQAEIMALFRRIQSSISKGESTATKKKKASRSNENSPTNSILEVLRH 193

Query: 160 SRKQVKELWTGKTSKKVGAKALRSKGTSEGKEMHDTSPPVADFKLVRPPSKFVKRSPIPS 219
           S K  K    G ++ + G K L  K +    +       + D KL RPPS F K+SPIPS
Sbjct: 194 STKHAK----GPSTVREGNKVLTQKRSVSKDQKTQAEHALEDVKLTRPPSNFTKKSPIPS 253

Query: 220 PQRGRGS--HLRVDASQAIAESRELKVPSIENMKLTELKALAKSRGIKGYSKLKKNELIE 274
           P   R +   L  +AS+  A + +L++P +E MKLTELK LAKSRGIKGYSKLKK EL+E
Sbjct: 254 PSTSRENTTELNSEASEGKASNHKLELPRVEKMKLTELKELAKSRGIKGYSKLKKGELLE 308

[Close]
BLAST of Cla019653 vs. TrEMBL
Match: B9S8B6_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1250170 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 9.2e-37
Identity = 118/301 (39.20%), Postives = 168/301 (55.81%), Query Frame = 1 

Query: 1   MEAIVFQPRILNRFPNLVSLGRRPTFASKGIELE-----------TPKNH-----LLNLA 60
           M+A+VF    +  FP+ +S  R+          +           +P +      LLNLA
Sbjct: 1   MDAVVFHSHSVFNFPSCLSFNRQLNLRKFSCSFKVFGDLSDLDNCSPLSMELIGILLNLA 60

Query: 61  DIAD-----VYPIKSIKLSVTNNRPDGNGGNRPPRRNSAPGKTRKNEVSSRKTEAHKNEE 120
           +IAD      +  + ++LS++N + DG+   R PR++S+PGK RK E  S K +      
Sbjct: 61  EIADGPSTFSWQKRVLQLSISNTKSDGSRRGRSPRKSSSPGK-RKKEDKSEKYQF----S 120

Query: 121 DLKESKYNNQEEIIALFRKIQTSIAKESASSNDEESC---KDEHGAESILETLRESRKQV 180
           D K  +   ++EIIALFR+I +SI+K  A S  +      +D+   ESILE LR+SRK V
Sbjct: 121 DGKLPRSPEKDEIIALFRRIHSSISKGEAKSTQQTDINFSEDKSPTESILEALRQSRKPV 180

Query: 181 KELWTGKTSKKVGAKALRSKGT-SEGKEMHDTSPPVA-DFKLVRPPSKFVKRSPIPSPQR 240
           K    G+   +V   +++ +G   EG ++ + +  +A  F   RPPSKF++RSPI SP  
Sbjct: 181 K----GREQDRV---SMQKRGVPKEGPKLQNNAQHMAAKFNFTRPPSKFIRRSPISSPSF 240

Query: 241 GRGS--HLRVDASQAIAESRELKVPSIENMKLTELKALAKSRGIKGYSKLKKNELIELLG 274
            RGS   L  D S +    + L++P IE MKL ELK LAKSRGIKGYSKLKK EL+ELL 
Sbjct: 241 PRGSPTELNNDPSASTESDKVLELPQIEEMKLPELKELAKSRGIKGYSKLKKGELLELLR 289

[Close]
BLAST of Cla019653 vs. TrEMBL
Match: A0A061GFL4_THECC (Rho termination factor, putative isoform 1 OS=Theobroma cacao GN=TCM_029665 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 6.6e-35
Identity = 105/240 (43.75%), Postives = 148/240 (61.67%), Query Frame = 1 

Query: 39  HLLNLADIADVY-PIKSIKLSVTNNRPDGNGGNRPPRRNSAPGKTRKNEVSSRKTEAHKN 98
           +LLNL +IAD   P  S++++V++   DGN     PR++SA G  RK E  S+K      
Sbjct: 117 NLLNLTEIADKSRPFCSLQVTVSSITSDGNRRGSRPRKSSASG--RKKEDESKKPPVGNE 176

Query: 99  EEDLKESKYNNQEEIIALFRKIQTSIAKE---SASSNDEESCKDEHGAESILETLRESRK 158
             +      +NQE+IIALFR+IQ+SI+K    SA +    S KD+  AES+L+ LRESRK
Sbjct: 177 APNS-----SNQEDIIALFRRIQSSISKGETGSAKAKSLSSSKDKSTAESVLDVLRESRK 236

Query: 159 QVKELWTGKTSKKVGAKA-LRSKGTSEGKEMHDTSPPVADFKLVRPPSKFVKRSPIPSPQ 218
            V+ + + K  K    K+ +  K    GK+ +  +    DFKL+RPPS FVKRSP+P P 
Sbjct: 237 NVRGIRSNKGGKASRWKSGVPKKIEGMGKKANAATQ---DFKLLRPPSNFVKRSPVPYPT 296

Query: 219 RGRGSHLRVDASQAIAESRELKVPSIENMKLTELKALAKSRGIKGYSKLKKNELIELLGS 274
             R   L  + ++ +A +  LK+ +IE +KLTELK LAK+RGIKGYS+ KK+EL+ LL S
Sbjct: 297 APRVKGLEQN-NEVVATNEGLKLANIEKLKLTELKDLAKARGIKGYSRFKKSELVRLLRS 345

[Close]
BLAST of Cla019653 vs. NCBI nr
Match: gi|700210518|gb|KGN65614.1| (hypothetical protein Csa_1G470300 [Cucumis sativus])

HSP 1 Score: 349.7 bits (896), Expect = 4.5e-93
Identity = 198/274 (72.26%), Postives = 217/274 (79.20%), Query Frame = 1 

Query: 1   MEAIVFQPRILNRFPNLVSLGRRPTFASKGIELETPKNHLLNLADIADVYPIKSIKLSVT 60
           MEA+VF PRIL RFPNL+SL RRPTFASK               D+ADVYP K+I+ SV+
Sbjct: 1   MEAVVFLPRILIRFPNLISLRRRPTFASK---------------DVADVYPSKNIQPSVS 60

Query: 61  NNRPDGNGGNRPPRRNSAPGKTRKNEVSSRKTEAHKNEEDLKESKYNNQEEIIALFRKIQ 120
            +RPDGN GNRPPRRNS PGK RK+E SSRKTE  K+EE +K+S+ N+QEE+IALFRKIQ
Sbjct: 61  KSRPDGNAGNRPPRRNSLPGKARKSESSSRKTETPKDEESVKKSETNDQEEVIALFRKIQ 120

Query: 121 TSIAKESASSNDEESCKDEHGAESILETLRESRKQVKELWTGKTSKKVGAKALRSKGTSE 180
           TSIAKESASS DEES KDE+   SILETLRESRKQ+K    GKTSKK GAK LRSKG SE
Sbjct: 121 TSIAKESASSIDEESRKDENA--SILETLRESRKQLK----GKTSKKAGAKVLRSKGKSE 180

Query: 181 GKEMHDTS-PPVADFKLVRPPSKFVKRSPIPSPQRGRGSHLRVDASQAIAESRELKVPSI 240
            KEMHD S PP ADFKLVRPPSKFVKRSPIP         L+VDASQAIAESRELK PS 
Sbjct: 181 EKEMHDPSPPPAADFKLVRPPSKFVKRSPIP---------LKVDASQAIAESRELKFPST 240

Query: 241 ENMKLTELKALAKSRGIKGYSKLKKNELIELLGS 274
           ENMKLTELKALAKSRGIKGYSKLKKNEL+E+L S
Sbjct: 241 ENMKLTELKALAKSRGIKGYSKLKKNELMEILRS 244

[Close]
BLAST of Cla019653 vs. NCBI nr
Match: gi|659068857|ref|XP_008446702.1| (PREDICTED: SAP-like protein BP-73 [Cucumis melo])

HSP 1 Score: 337.8 bits (865), Expect = 1.8e-89
Identity = 186/235 (79.15%), Postives = 198/235 (84.26%), Query Frame = 1 

Query: 40  LLNLADIADVYPIKSIKLSVTNNRPDGNGGNRPPRRNSAPGKTRKNEVSSRKTEAHKNEE 99
           LLNLADIADVYP K+I+LSV+NNRPDGN  NRPPRRNS PGKTRK+E SSRK EA KNEE
Sbjct: 53  LLNLADIADVYPSKNIQLSVSNNRPDGNARNRPPRRNSLPGKTRKSESSSRKKEAPKNEE 112

Query: 100 DLKESKYNNQEEIIALFRKIQTSIAKESASSNDEESCKDEHGAESILETLRESRKQVKEL 159
           ++K+SK N+QEEIIALFRKIQ SIAKESASS DEES KDEHGA SILETLRE RKQ+K  
Sbjct: 113 NIKKSKPNDQEEIIALFRKIQASIAKESASSIDEESHKDEHGATSILETLREPRKQLK-- 172

Query: 160 WTGKTSKKVGAKALRSKGTSEGKEMHDTS-PPVADFKLVRPPSKFVKRSPIPSPQRGRGS 219
             GKTSKK GAK  RSKGTSE KEMHD S PP ADFKLVRPPSKFVKRSPIP        
Sbjct: 173 --GKTSKKAGAKVFRSKGTSEEKEMHDPSPPPAADFKLVRPPSKFVKRSPIPP------- 232

Query: 220 HLRVDASQAIAESRELKVPSIENMKLTELKALAKSRGIKGYSKLKKNELIELLGS 274
             +VDASQAIAESRELK PSIENMKL ELKALAKSRGIKGYSKLKKNEL+E+L S
Sbjct: 233 --KVDASQAIAESRELKFPSIENMKLAELKALAKSRGIKGYSKLKKNELMEILRS 274

[Close]
BLAST of Cla019653 vs. NCBI nr
Match: gi|778665168|ref|XP_011648505.1| (PREDICTED: uncharacterized protein LOC105434499, partial [Cucumis sativus])

HSP 1 Score: 322.0 bits (824), Expect = 1.0e-84
Identity = 179/235 (76.17%), Postives = 196/235 (83.40%), Query Frame = 1 

Query: 40  LLNLADIADVYPIKSIKLSVTNNRPDGNGGNRPPRRNSAPGKTRKNEVSSRKTEAHKNEE 99
           LLNLAD+ADVYP K+I+ SV+ +RPDGN GNRPPRRNS PGK RK+E SSRKTE  K+EE
Sbjct: 46  LLNLADVADVYPSKNIQPSVSKSRPDGNAGNRPPRRNSLPGKARKSESSSRKTETPKDEE 105

Query: 100 DLKESKYNNQEEIIALFRKIQTSIAKESASSNDEESCKDEHGAESILETLRESRKQVKEL 159
            +K+S+ N+QEE+IALFRKIQTSIAKESASS DEES KDE+   SILETLRESRKQ+K  
Sbjct: 106 SVKKSETNDQEEVIALFRKIQTSIAKESASSIDEESRKDENA--SILETLRESRKQLK-- 165

Query: 160 WTGKTSKKVGAKALRSKGTSEGKEMHDTS-PPVADFKLVRPPSKFVKRSPIPSPQRGRGS 219
             GKTSKK GAK LRSKG SE KEMHD S PP ADFKLVRPPSKFVKRSPIP        
Sbjct: 166 --GKTSKKAGAKVLRSKGKSEEKEMHDPSPPPAADFKLVRPPSKFVKRSPIP-------- 225

Query: 220 HLRVDASQAIAESRELKVPSIENMKLTELKALAKSRGIKGYSKLKKNELIELLGS 274
            L+VDASQAIAESRELK PS ENMKLTELKALAKSRGIKGYSKLKKNEL+E+L S
Sbjct: 226 -LKVDASQAIAESRELKFPSTENMKLTELKALAKSRGIKGYSKLKKNELMEILRS 265

[Close]
BLAST of Cla019653 vs. NCBI nr
Match: gi|645237682|ref|XP_008225320.1| (PREDICTED: uncharacterized protein LOC103324974 [Prunus mume])

HSP 1 Score: 174.1 bits (440), Expect = 3.4e-40
Identity = 115/277 (41.52%), Postives = 158/277 (57.04%), Query Frame = 1 

Query: 1   MEAIVFQPRILNRFPNLVSLGRRPTFASKGIELETPKNHLLNLADIADVYPIKSIKLSVT 60
           M A+V +   + RFP   S  ++P               + +L D+   +  K + L+V+
Sbjct: 1   MGAVVHEYHSVLRFPTFFSFSKQPKLGKS----------IFSLKDVPSPFERKGLHLTVS 60

Query: 61  NNRPDGNGGNRPPRRNSAPGKTRKNEVSSRKTEAHKNEEDLKESKYNNQEEIIALFRKIQ 120
               +GNGG++PPRR SA G+T KN+ + ++  A K      +SK ++QEEII+LFR+IQ
Sbjct: 61  CIGSEGNGGDQPPRRRSASGRTNKNDGTKKRGPAGK------KSKASDQEEIISLFRRIQ 120

Query: 121 TSIAKE---SASSNDEESCKDEHGAESILETLRESRKQVKELWTGKTSKKVGAKA-LRSK 180
           TSI+ E   +A   +    +D   +ESIL+ L  SRKQ      GK   K G +   R K
Sbjct: 121 TSISNEESVNAKKKNSNVSEDSPSSESILQALYGSRKQ-----KGKALDKAGQEVWTRRK 180

Query: 181 GTSEGKEMHDTSPPVADFKLVRPPSKFVKRSPIPSPQRGRGSHLRVDASQAIAESRELKV 240
            T E +   D  P VA+FKL RPPSKFVKRSPIPS    RG  L ++   + + +     
Sbjct: 181 ATQEQQIQED--PSVAEFKLTRPPSKFVKRSPIPSQSIPRGQVLELNNGASSSAAGR--- 240

Query: 241 PSIENMKLTELKALAKSRGIKGYSKLKKNELIELLGS 274
             IE MKL ELK LAK+RGIKGYSKLKK+EL++LL S
Sbjct: 241 --IEEMKLPELKELAKTRGIKGYSKLKKSELVQLLKS 249

[Close]
BLAST of Cla019653 vs. NCBI nr
Match: gi|731404749|ref|XP_010655541.1| (PREDICTED: SAP-like protein BP-73 isoform X2 [Vitis vinifera])

HSP 1 Score: 173.7 bits (439), Expect = 4.4e-40
Identity = 110/243 (45.27%), Postives = 153/243 (62.96%), Query Frame = 1 

Query: 40  LLNLADIADVY-PIKS----IKLSVTNNRPDGNGGNRPPRRNSAPGKTRKNEVSSRKTEA 99
           LLNLA+ AD + P  S    + L++++ + DGN   RPPR+N   G+T K + +     +
Sbjct: 4   LLNLAETADGFSPFASRRDLLPLTISSIKSDGNRRGRPPRKNHISGRTEKGDKNKTPPSS 63

Query: 100 HKNEEDLKESKYNNQEEIIALFRKIQTSIAK-ESASSND--EESCKDEHGAESILETLRE 159
                D K S+ +NQ+EIIALFR+IQ+SI+K ES  +     +S  D+  AES+LE LR+
Sbjct: 64  -----DGKLSESSNQDEIIALFRRIQSSISKGESLGTKKRISDSSVDKTSAESVLEILRQ 123

Query: 160 SRKQVKELWTGKTSKKVGAKAL-RSKGTSEGKEMHDTSPPVADFKLVRPPSKFVKRSPIP 219
           SRKQVK    G+ SKK G + L + +G  +  +       VAD K  RPPS FVKRSPIP
Sbjct: 124 SRKQVK----GRPSKKEGGQVLTQRRGVPKKDQGIPDKQYVADLKSARPPSNFVKRSPIP 183

Query: 220 SPQRGRGSHLRVDASQAIAESRELKVPSIENMKLTELKALAKSRGIKGYSKLKKNELIEL 274
           SP   RG  +++    ++  +   ++P +E MK+TELK LAKSRGIKGYSK+KK+EL+EL
Sbjct: 184 SPTNPRGKAVKLKNEVSVRTTSFNELPKVEEMKVTELKELAKSRGIKGYSKMKKSELVEL 237

The following BLAST results are available for this feature:
BLAST of Cla019653 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BP73_ORYSJ3.7e-0751.92SAP-like protein BP-73 OS=Oryza sativa subsp. japonica GN=BP-73 PE=1 SV=1[more]
RHON1_ARATH1.1e-0652.94Rho-N domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana GN=RHON... [more]
BLAST of Cla019653 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LX66_CUCSA3.1e-9372.26Uncharacterized protein OS=Cucumis sativus GN=Csa_1G470300 PE=4 SV=1[more]
D7TJN8_VITVI4.4e-3940.07Putative uncharacterized protein OS=Vitis vinifera GN=VIT_10s0003g01530 PE=4 SV=... [more]
B9I1I7_POPTR8.3e-3842.62Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s07070g PE=4 SV=2[more]
B9S8B6_RICCO9.2e-3739.20Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1250170 PE=4 SV=1[more]
A0A061GFL4_THECC6.6e-3543.75Rho termination factor, putative isoform 1 OS=Theobroma cacao GN=TCM_029665 PE=4... [more]
BLAST of Cla019653 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700210518|gb|KGN65614.1|4.5e-9372.26hypothetical protein Csa_1G470300 [Cucumis sativus][more]
gi|659068857|ref|XP_008446702.1|1.8e-8979.15PREDICTED: SAP-like protein BP-73 [Cucumis melo][more]
gi|778665168|ref|XP_011648505.1|1.0e-8476.17PREDICTED: uncharacterized protein LOC105434499, partial [Cucumis sativus][more]
gi|645237682|ref|XP_008225320.1|3.4e-4041.52PREDICTED: uncharacterized protein LOC103324974 [Prunus mume][more]
gi|731404749|ref|XP_010655541.1|4.4e-4045.27PREDICTED: SAP-like protein BP-73 isoform X2 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR011112Rho_N
Vocabulary: Biological Process
TermDefinition
GO:0006353DNA-templated transcription, termination
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006353 DNA-templated transcription, termination
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla019653Cla019653.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011112Rho termination factor, N-terminalPFAMPF07498Rho_Ncoord: 240..269
score: 4.
IPR011112Rho termination factor, N-terminalSMARTSM00959Rho_N_2_acoord: 238..273
score: 0.
IPR011112Rho termination factor, N-terminalunknownSSF68912Rho N-terminal domain-likecoord: 236..269
score: 4.3
NoneNo IPR availableGENE3DG3DSA:1.10.720.10coord: 240..268
score: 7.
NoneNo IPR availablePANTHERPTHR34449FAMILY NOT NAMEDcoord: 73..273
score: 2.0
NoneNo IPR availablePANTHERPTHR34449:SF1RHO TERMINATION FACTORcoord: 73..273
score: 2.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla019653Cla97C03G058820Watermelon (97103) v2wmwmbB124
Cla019653Csa1G470300Cucumber (Chinese Long) v2cuwmB009
Cla019653MELO3C002669Melon (DHL92) v3.5.1mewmB147
Cla019653ClCG03G007530Watermelon (Charleston Gray)wcgwmB223
Cla019653CSPI01G21960Wild cucumber (PI 183967)cpiwmB011
Cla019653Cucsa.212950Cucumber (Gy14) v1cgywmB408
Cla019653CmaCh18G004250Cucurbita maxima (Rimu)cmawmB370
Cla019653CmoCh18G004040Cucurbita moschata (Rifu)cmowmB362
Cla019653Lsi02G008240Bottle gourd (USVL1VR-Ls)lsiwmB188
Cla019653Cp4.1LG09g07860Cucurbita pepo (Zucchini)cpewmB024
Cla019653MELO3C002669.2Melon (DHL92) v3.6.1medwmB144
Cla019653Carg14572Silver-seed gourdcarwmB0141
Cla019653CsaV3_1G033180Cucumber (Chinese Long) v3cucwmB014
Cla019653Bhi08G001780Wax gourdwgowmB472
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla019653Silver-seed gourdcarwmB0956
Cla019653Cucumber (Chinese Long) v3cucwmB506
Cla019653Cucumber (Chinese Long) v3cucwmB611
Cla019653Watermelon (97103) v2wmwmbB113
Cla019653Watermelon (97103) v2wmwmbB121
Cla019653Watermelon (97103) v2wmwmbB138
Cla019653Wax gourdwgowmB367
Cla019653Wax gourdwgowmB418
Cla019653Watermelon (97103) v1wmwmB079
Cla019653Watermelon (97103) v1wmwmB084
Cla019653Watermelon (97103) v1wmwmB093
Cla019653Cucumber (Gy14) v1cgywmB022
Cla019653Cucumber (Gy14) v1cgywmB377
Cla019653Cucurbita maxima (Rimu)cmawmB186
Cla019653Cucurbita maxima (Rimu)cmawmB485
Cla019653Cucurbita maxima (Rimu)cmawmB622
Cla019653Cucurbita maxima (Rimu)cmawmB819
Cla019653Cucurbita moschata (Rifu)cmowmB174
Cla019653Cucurbita moschata (Rifu)cmowmB480
Cla019653Cucurbita moschata (Rifu)cmowmB613
Cla019653Cucurbita moschata (Rifu)cmowmB809
Cla019653Melon (DHL92) v3.5.1mewmB223
Cla019653Melon (DHL92) v3.5.1mewmB562
Cla019653Watermelon (Charleston Gray)wcgwmB125
Cla019653Watermelon (Charleston Gray)wcgwmB186
Cla019653Watermelon (Charleston Gray)wcgwmB361
Cla019653Cucumber (Chinese Long) v2cuwmB480
Cla019653Cucumber (Chinese Long) v2cuwmB582
Cla019653Cucurbita pepo (Zucchini)cpewmB069
Cla019653Cucurbita pepo (Zucchini)cpewmB251
Cla019653Cucurbita pepo (Zucchini)cpewmB279
Cla019653Cucurbita pepo (Zucchini)cpewmB478
Cla019653Cucurbita pepo (Zucchini)cpewmB508
Cla019653Bottle gourd (USVL1VR-Ls)lsiwmB053
Cla019653Bottle gourd (USVL1VR-Ls)lsiwmB136
Cla019653Cucumber (Gy14) v2cgybwmB011
Cla019653Cucumber (Gy14) v2cgybwmB451
Cla019653Cucumber (Gy14) v2cgybwmB544
Cla019653Melon (DHL92) v3.6.1medwmB219
Cla019653Melon (DHL92) v3.6.1medwmB549
Cla019653Silver-seed gourdcarwmB0544
Cla019653Silver-seed gourdcarwmB0797