Cp4.1LG09g05980 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG09g05980
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	NADH-ubiquinone oxidoreductase 11 kDa subunit
Location	Cp4.1LG09 : 4086957 .. 4088199 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATACTTCTCATTCTTCGAGTCCATTTCTGCGAGTGGTGAACGGTTGGTTGACGTCTACTGAGGAAGATATCTCAATTCCTCGATCGATTTTGAAGGTAAGCGTTCGATTAATTTTGGTTTCTATTTCGCGACATATTATCGCTGCTTTAATTAGTTTTTGTTCGGTTGAATTTGGAAATCTGCTCGAGTTTTGTTTTTCCAATTTTCGTCTTTGGTTAACCTAGGGCTTTCACTTGAGAAATTTTAGATCTGGTTTGTTGTTTCGGTAATCTCTGGAACGATGAAAGAAATTTAGAGTGGATTCGGATGATCCTGATAGTTTTGGTTAAACTATGTTTCTGATTCACCTAAATCTTTTTTCATTATAGAACTATGTTGTTATATTTTTTTTTGAGGAAATCGGCATTTTAAGTGAATTTCATGTTGGATGCTTTGTTTATTCGGCATTTTTTCCTCATTTTTTCCGTTAATTTATCAGGAAGAAATTAGAAATGAAGTTCATCATGGAGTTTGCCGAGAATTTGGTATTAAGAATTATGGAGGATCCAAAAGAGAGGGATCGCAAATTCCGAGAGCGCCTGTATGCGGTAAAGGACCGATGCCAAAAGACGAAGGAGATGTGGAGCTATCCTCTCCGTCCTTACGGATTCTGGACGTTTGACCGCCACAATGCTCAGCTGCATTGGGATGCACAAATTAGCCAGGTTCCTGGTAGAAGGGATCCTTATGATGACATGCTTCAGGACATCCACAACTCCAAGTGATTTATGAAGGTTCTGTTTCTAAGCCTTTTCCTGTCCATTTTGATTGGAACTTGAAACCTTCATTATTTTTTAGTTAACTTTCATAGTCTTAATTCTTATAAATGGGAGTGGGTTTGGAGAGAGATGGCTCTTAGATAAAGACCCCTTTGATTTTGTTCTTGAAATACTCTGCAGAATACTCGCAAGAGCTCTGAAATTGCTGGTGGAAACTGGGAAGCTCTCGAGCAATTGTTTGAACGTATGTTTTTTGTTGTTTTAATTTCACGTTGTGTTGTTGAATACCTTGTGGTTTGTTGTTGTTTAATAAACGTCCTGGTTTGCTCTTGAGATGATTTTCAAGTTTGTGAGTTTTGAGCTCATTGTTTCTTCTGACAAAGAGTAACATAAACAGCCTCGATTGATTAGTAACAACAAATTAAAATAAAGGTTTTTGTTTGGATGAGGTTAACTGTATTGTTTGTTCATAAAACTTCCT

mRNA sequence

ATGGATACTTCTCATTCTTCGAGTCCATTTCTGCGAGTGGTGAACGGTTGGTTGACGTCTACTGAGGAAGATATCTCAATTCCTCGATCGATTTTGAAGGGCTTTCACTTGAGAAATTTTAGATCTGGTTTGTTGTTTCGGAAGAAATTAGAAATGAAGTTCATCATGGAGTTTGCCGAGAATTTGGTATTAAGAATTATGGAGGATCCAAAAGAGAGGGATCGCAAATTCCGAGAGCGCCTGTATGCGGTAAAGGACCGATGCCAAAAGACGAAGGAGATGTGGAGCTATCCTCTCCGTCCTTACGGATTCTGGACGTTTGACCGCCACAATGCTCAGCTGCATTGGGATGCACAAATTAGCCAGGTTCCTGGTAGAAGGGATCCTTATGATGACATGCTTCAGGACATCCACAACTCCAAGTGATTTATGAAGAATACTCGCAAGAGCTCTGAAATTGCTGGTGGAAACTGGGAAGCTCTCGAGCAATTGTTTGAACGTATGTTTTTTGTTGTTTTAATTTCACGTTGTGTTGTTGAATACCTTGTGGTTTGTTGTTGTTTAATAAACGTCCTGGTTTGCTCTTGAGATGATTTTCAAGTTTGTGAGTTTTGAGCTCATTGTTTCTTCTGACAAAGAGTAACATAAACAGCCTCGATTGATTAGTAACAACAAATTAAAATAAAGGTTTTTGTTTGGATGAGGTTAACTGTATTGTTTGTTCATAAAACTTCCT

Coding sequence (CDS)

ATGGATACTTCTCATTCTTCGAGTCCATTTCTGCGAGTGGTGAACGGTTGGTTGACGTCTACTGAGGAAGATATCTCAATTCCTCGATCGATTTTGAAGGGCTTTCACTTGAGAAATTTTAGATCTGGTTTGTTGTTTCGGAAGAAATTAGAAATGAAGTTCATCATGGAGTTTGCCGAGAATTTGGTATTAAGAATTATGGAGGATCCAAAAGAGAGGGATCGCAAATTCCGAGAGCGCCTGTATGCGGTAAAGGACCGATGCCAAAAGACGAAGGAGATGTGGAGCTATCCTCTCCGTCCTTACGGATTCTGGACGTTTGACCGCCACAATGCTCAGCTGCATTGGGATGCACAAATTAGCCAGGTTCCTGGTAGAAGGGATCCTTATGATGACATGCTTCAGGACATCCACAACTCCAAGTGA

Protein sequence

MDTSHSSSPFLRVVNGWLTSTEEDISIPRSILKGFHLRNFRSGLLFRKKLEMKFIMEFAENLVLRIMEDPKERDRKFRERLYAVKDRCQKTKEMWSYPLRPYGFWTFDRHNAQLHWDAQISQVPGRRDPYDDMLQDIHNSK

Homology

[Close]

BLAST of Cp4.1LG09g05980 vs. TrEMBL
Match: A9P8A9_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 9.3e-41
Identity = 80/89 (89.89%), Postives = 85/89 (95.51%), Query Frame = 1


Query: 52  MKFIMEFAENLVLRIMEDPKERDRKFRERLYAVKDRCQKTKEMWSYPLRPYGFWTFDRHN 111
           M FIMEFAENLVLR+MEDPKERDRKFRER+YAVKDRCQKTKEMWSYPLRPYGFWTF+RHN
Sbjct: 1   MGFIMEFAENLVLRLMEDPKERDRKFRERVYAVKDRCQKTKEMWSYPLRPYGFWTFERHN 60

Query: 112 AQLHWDAQISQVPGRRDPYDDMLQDIHNS 141
           AQL WDAQISQVPGRRDPYDD+LQD + S
Sbjct: 61  AQLAWDAQISQVPGRRDPYDDLLQDSYGS 89

[Close]

BLAST of Cp4.1LG09g05980 vs. TrEMBL
Match: B9GZY8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s17150g PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 1.0e-39
Identity = 77/85 (90.59%), Postives = 83/85 (97.65%), Query Frame = 1


Query: 52  MKFIMEFAENLVLRIMEDPKERDRKFRERLYAVKDRCQKTKEMWSYPLRPYGFWTFDRHN 111
           M FIMEFAENL+LR+MEDPKERDRKFRER+YAVKDRCQKTKEMWSYPLRPYGFWTF+RHN
Sbjct: 1   MGFIMEFAENLILRLMEDPKERDRKFRERVYAVKDRCQKTKEMWSYPLRPYGFWTFERHN 60

Query: 112 AQLHWDAQISQVPGRRDPYDDMLQD 137
           AQL WDA+ISQVPGRRDPYDD+LQD
Sbjct: 61  AQLAWDAKISQVPGRRDPYDDLLQD 85

[Close]

BLAST of Cp4.1LG09g05980 vs. TrEMBL
Match: A0A067JSF0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17960 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 1.0e-39
Identity = 76/90 (84.44%), Postives = 86/90 (95.56%), Query Frame = 1


Query: 52  MKFIMEFAENLVLRIMEDPKERDRKFRERLYAVKDRCQKTKEMWSYPLRPYGFWTFDRHN 111
           M FIMEFAENL+LR+MEDPKERDRKFRE +YA+KDRCQKTKEMWSYPLRPYGFWTF+RHN
Sbjct: 1   MGFIMEFAENLILRLMEDPKERDRKFREHVYAMKDRCQKTKEMWSYPLRPYGFWTFERHN 60

Query: 112 AQLHWDAQISQVPGRRDPYDDMLQDIHNSK 142
           +QL WDAQISQVPGRRDPYDD+LQD ++S+
Sbjct: 61  SQLAWDAQISQVPGRRDPYDDLLQDSYDSR 90

[Close]

BLAST of Cp4.1LG09g05980 vs. TrEMBL
Match: A0A0B0P8Z4_GOSAR (NADH-ubiquinone oxidoreductase 11 kDa subunit OS=Gossypium arboreum GN=F383_10607 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 3.3e-38
Identity = 75/89 (84.27%), Postives = 82/89 (92.13%), Query Frame = 1


Query: 52  MKFIMEFAENLVLRIMEDPKERDRKFRERLYAVKDRCQKTKEMWSYPLRPYGFWTFDRHN 111
           M FIMEFAENLVLR+MEDPKERDRKFRE +Y++KDRC KTKEMWSYPLRPYGFWTF+RHN
Sbjct: 1   MGFIMEFAENLVLRLMEDPKERDRKFREHVYSMKDRCAKTKEMWSYPLRPYGFWTFERHN 60

Query: 112 AQLHWDAQISQVPGRRDPYDDMLQDIHNS 141
           AQL WD QISQVPGRRDPYDD+LQD + S
Sbjct: 61  AQLRWDPQISQVPGRRDPYDDLLQDSYAS 89

[Close]

BLAST of Cp4.1LG09g05980 vs. TrEMBL
Match: A0A0D2RCV5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G167100 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 3.3e-38
Identity = 75/89 (84.27%), Postives = 82/89 (92.13%), Query Frame = 1


Query: 52  MKFIMEFAENLVLRIMEDPKERDRKFRERLYAVKDRCQKTKEMWSYPLRPYGFWTFDRHN 111
           M FIMEFAENLVLR+MEDPKERDRKFRE +Y++KDRC KTKEMWSYPLRPYGFWTF+RHN
Sbjct: 1   MGFIMEFAENLVLRLMEDPKERDRKFREHVYSMKDRCAKTKEMWSYPLRPYGFWTFERHN 60

Query: 112 AQLHWDAQISQVPGRRDPYDDMLQDIHNS 141
           AQL WD QISQVPGRRDPYDD+LQD + S
Sbjct: 61  AQLRWDPQISQVPGRRDPYDDLLQDSYAS 89

[Close]

BLAST of Cp4.1LG09g05980 vs. TAIR10
Match: AT1G67350.1 (AT1G67350.1 unknown protein)

HSP 1 Score: 143.7 bits (361), Expect = 8.9e-35
Identity = 63/85 (74.12%), Postives = 75/85 (88.24%), Query Frame = 1


Query: 52  MKFIMEFAENLVLRIMEDPKERDRKFRERLYAVKDRCQKTKEMWSYPLRPYGFWTFDRHN 111
           M FIMEFAENLVLR+ME+P+ERDRK RE +Y + +RC+K KEMW+ P+RPYGFWTF+RHN
Sbjct: 1   MGFIMEFAENLVLRLMENPEERDRKAREHIYEMHERCKKIKEMWALPIRPYGFWTFERHN 60

Query: 112 AQLHWDAQISQVPGRRDPYDDMLQD 137
           AQL WD QISQV GRRDPYDD+L+D
Sbjct: 61  AQLRWDPQISQVAGRRDPYDDLLED 85

[Close]

BLAST of Cp4.1LG09g05980 vs. NCBI nr
Match: gi|778704596|ref|XP_011655561.1| (PREDICTED: uncharacterized protein LOC101213251 [Cucumis sativus])

HSP 1 Score: 174.9 bits (442), Expect = 1.0e-40
Identity = 78/89 (87.64%), Postives = 85/89 (95.51%), Query Frame = 1


Query: 52  MKFIMEFAENLVLRIMEDPKERDRKFRERLYAVKDRCQKTKEMWSYPLRPYGFWTFDRHN 111
           MKFIMEFAE+LVLR+MEDPKERDR+FRE +YA+KDRCQKTKEMWSYPLRPYGFWTFDRHN
Sbjct: 1   MKFIMEFAEDLVLRLMEDPKERDRRFREHIYAIKDRCQKTKEMWSYPLRPYGFWTFDRHN 60

Query: 112 AQLHWDAQISQVPGRRDPYDDMLQDIHNS 141
           +QL WD QISQVPGRRDPYDDMLQD +NS
Sbjct: 61  SQLKWDPQISQVPGRRDPYDDMLQDFNNS 89

[Close]

BLAST of Cp4.1LG09g05980 vs. NCBI nr
Match: gi|118481338|gb|ABK92612.1| (unknown [Populus trichocarpa])

HSP 1 Score: 174.5 bits (441), Expect = 1.3e-40
Identity = 80/89 (89.89%), Postives = 85/89 (95.51%), Query Frame = 1


Query: 52  MKFIMEFAENLVLRIMEDPKERDRKFRERLYAVKDRCQKTKEMWSYPLRPYGFWTFDRHN 111
           M FIMEFAENLVLR+MEDPKERDRKFRER+YAVKDRCQKTKEMWSYPLRPYGFWTF+RHN
Sbjct: 1   MGFIMEFAENLVLRLMEDPKERDRKFRERVYAVKDRCQKTKEMWSYPLRPYGFWTFERHN 60

Query: 112 AQLHWDAQISQVPGRRDPYDDMLQDIHNS 141
           AQL WDAQISQVPGRRDPYDD+LQD + S
Sbjct: 61  AQLAWDAQISQVPGRRDPYDDLLQDSYGS 89

[Close]

BLAST of Cp4.1LG09g05980 vs. NCBI nr
Match: gi|802724293|ref|XP_012085678.1| (PREDICTED: uncharacterized protein LOC105644811 [Jatropha curcas])

HSP 1 Score: 171.0 bits (432), Expect = 1.5e-39
Identity = 76/90 (84.44%), Postives = 86/90 (95.56%), Query Frame = 1


Query: 52  MKFIMEFAENLVLRIMEDPKERDRKFRERLYAVKDRCQKTKEMWSYPLRPYGFWTFDRHN 111
           M FIMEFAENL+LR+MEDPKERDRKFRE +YA+KDRCQKTKEMWSYPLRPYGFWTF+RHN
Sbjct: 1   MGFIMEFAENLILRLMEDPKERDRKFREHVYAMKDRCQKTKEMWSYPLRPYGFWTFERHN 60

Query: 112 AQLHWDAQISQVPGRRDPYDDMLQDIHNSK 142
           +QL WDAQISQVPGRRDPYDD+LQD ++S+
Sbjct: 61  SQLAWDAQISQVPGRRDPYDDLLQDSYDSR 90

[Close]

BLAST of Cp4.1LG09g05980 vs. NCBI nr
Match: gi|224072600|ref|XP_002303800.1| (hypothetical protein POPTR_0003s17150g [Populus trichocarpa])

HSP 1 Score: 171.0 bits (432), Expect = 1.5e-39
Identity = 77/85 (90.59%), Postives = 83/85 (97.65%), Query Frame = 1


Query: 52  MKFIMEFAENLVLRIMEDPKERDRKFRERLYAVKDRCQKTKEMWSYPLRPYGFWTFDRHN 111
           M FIMEFAENL+LR+MEDPKERDRKFRER+YAVKDRCQKTKEMWSYPLRPYGFWTF+RHN
Sbjct: 1   MGFIMEFAENLILRLMEDPKERDRKFRERVYAVKDRCQKTKEMWSYPLRPYGFWTFERHN 60

Query: 112 AQLHWDAQISQVPGRRDPYDDMLQD 137
           AQL WDA+ISQVPGRRDPYDD+LQD
Sbjct: 61  AQLAWDAKISQVPGRRDPYDDLLQD 85

[Close]

BLAST of Cp4.1LG09g05980 vs. NCBI nr
Match: gi|659090476|ref|XP_008446038.1| (PREDICTED: uncharacterized protein LOC103488888 [Cucumis melo])

HSP 1 Score: 169.5 bits (428), Expect = 4.3e-39
Identity = 76/89 (85.39%), Postives = 84/89 (94.38%), Query Frame = 1


Query: 52  MKFIMEFAENLVLRIMEDPKERDRKFRERLYAVKDRCQKTKEMWSYPLRPYGFWTFDRHN 111
           MKFIMEFAE+LVLR+MEDPKERDR+FRE +YAVKDRCQKTKEMWS PLRPYGFWTFDRHN
Sbjct: 1   MKFIMEFAEDLVLRLMEDPKERDRRFREHVYAVKDRCQKTKEMWSLPLRPYGFWTFDRHN 60

Query: 112 AQLHWDAQISQVPGRRDPYDDMLQDIHNS 141
           +QL WD QISQVPGRRDPYDD+LQD +N+
Sbjct: 61  SQLKWDPQISQVPGRRDPYDDLLQDFNNN 89

The following BLAST results are available for this feature:

BLAST of Cp4.1LG09g05980 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG09g05980 vs. TrEMBL


Match Name	E-value	Identity	Description
A9P8A9_POPTR	9.3e-41	89.89	Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1	[more]
B9GZY8_POPTR	1.0e-39	90.59	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s17150g PE=4 SV=1	[more]
A0A067JSF0_JATCU	1.0e-39	84.44	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17960 PE=4 SV=1	[more]
A0A0B0P8Z4_GOSAR	3.3e-38	84.27	NADH-ubiquinone oxidoreductase 11 kDa subunit OS=Gossypium arboreum GN=F383_1060...	[more]
A0A0D2RCV5_GOSRA	3.3e-38	84.27	Uncharacterized protein OS=Gossypium raimondii GN=B456_005G167100 PE=4 SV=1	[more]

BLAST of Cp4.1LG09g05980 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G67350.1	8.9e-35	74.12	unknown protein	[more]

BLAST of Cp4.1LG09g05980 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778704596\|ref\|XP_011655561.1\|	1.0e-40	87.64	PREDICTED: uncharacterized protein LOC101213251 [Cucumis sativus]	[more]
gi\|118481338\|gb\|ABK92612.1\|	1.3e-40	89.89	unknown [Populus trichocarpa]	[more]
gi\|802724293\|ref\|XP_012085678.1\|	1.5e-39	84.44	PREDICTED: uncharacterized protein LOC105644811 [Jatropha curcas]	[more]
gi\|224072600\|ref\|XP_002303800.1\|	1.5e-39	90.59	hypothetical protein POPTR_0003s17150g [Populus trichocarpa]	[more]
gi\|659090476\|ref\|XP_008446038.1\|	4.3e-39	85.39	PREDICTED: uncharacterized protein LOC103488888 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG09g05980.1	Cp4.1LG09g05980.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37709	FAMILY NOT NAMED	coord: 54..137 score: 3.4
None	No IPR available	PANTHER	PTHR37709:SF1	SUBFAMILY NOT NAMED	coord: 54..137 score: 3.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG09g05980	Cucsa.075680	Cucumber (Gy14) v1	cgycpeB0120
Cp4.1LG09g05980	CmaCh18G006960	Cucurbita maxima (Rimu)	cmacpeB415
Cp4.1LG09g05980	CmaCh04G018340	Cucurbita maxima (Rimu)	cmacpeB694
Cp4.1LG09g05980	CmoCh04G019300	Cucurbita moschata (Rifu)	cmocpeB646
Cp4.1LG09g05980	CmoCh18G006830	Cucurbita moschata (Rifu)	cmocpeB376
Cp4.1LG09g05980	Cla022965	Watermelon (97103) v1	cpewmB056
Cp4.1LG09g05980	MELO3C011867	Melon (DHL92) v3.5.1	cpemeB021
Cp4.1LG09g05980	ClCG11G013680	Watermelon (Charleston Gray)	cpewcgB019
Cp4.1LG09g05980	CSPI05G21430	Wild cucumber (PI 183967)	cpecpiB042
Cp4.1LG09g05980	Lsi04G006810	Bottle gourd (USVL1VR-Ls)	cpelsiB030
Cp4.1LG09g05980	MELO3C011867.2	Melon (DHL92) v3.6.1	cpemedB025
Cp4.1LG09g05980	CsaV3_5G030290	Cucumber (Chinese Long) v3	cpecucB0051
Cp4.1LG09g05980	Bhi07G001528	Wax gourd	cpewgoB0054
Cp4.1LG09g05980	CsGy5G020950	Cucumber (Gy14) v2	cgybcpeB588
Cp4.1LG09g05980	Carg21229	Silver-seed gourd	carcpeB0970

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG09g05980	Cp4.1LG01g16220	Cucurbita pepo (Zucchini)	cpecpeB033

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG09g05980	Cucurbita pepo (Zucchini)	cpecpeB060
Cp4.1LG09g05980	Cucumber (Gy14) v1	cgycpeB1037
Cp4.1LG09g05980	Cucurbita maxima (Rimu)	cmacpeB167
Cp4.1LG09g05980	Cucurbita moschata (Rifu)	cmocpeB143
Cp4.1LG09g05980	Wild cucumber (PI 183967)	cpecpiB030
Cp4.1LG09g05980	Cucumber (Chinese Long) v2	cpecuB034
Cp4.1LG09g05980	Cucumber (Chinese Long) v2	cpecuB047
Cp4.1LG09g05980	Bottle gourd (USVL1VR-Ls)	cpelsiB045
Cp4.1LG09g05980	Watermelon (Charleston Gray)	cpewcgB054
Cp4.1LG09g05980	Watermelon (97103) v1	cpewmB022
Cp4.1LG09g05980	Melon (DHL92) v3.5.1	cpemeB037
Cp4.1LG09g05980	Cucumber (Gy14) v2	cgybcpeB154
Cp4.1LG09g05980	Melon (DHL92) v3.6.1	cpemedB043
Cp4.1LG09g05980	Silver-seed gourd	carcpeB0886
Cp4.1LG09g05980	Cucumber (Chinese Long) v3	cpecucB0035
Cp4.1LG09g05980	Wax gourd	cpewgoB0032