CSPI05G21430 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI05G21430
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionNADH-ubiquinone oxidoreductase 11 kDa subunit
LocationChr5 : 22171605 .. 22173568 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AATGGGAAATTAGATGGATTTTGTTCATTCTTCGAGTTCATTTTCTCCCGCGGGTGAACTTCAGTTTACTGAGGAAGAAATCTCAATTCCTGCAATCGACTTTCGAGGTAAGCTTTCGATTGATGTTCGTTTCTTATCGCATTCTCAATTGCCTTTTTCCAATTGAATTCAGAGAGATGTTCTTCAATATTTTTGCAATTTTCGTGTTTTATTAAACTTAGGGCTTTTTCTTGAGAATTTCTCGATCCGGTTTGTTTCTTAGATTATTTCCGAAATAAAAAATTTAGGAAGGAGAAAGGAGATTTCAAGATCCTTATTGTCGCCAATGAACTGAGTTTCTGAATCACCTGGATTTAGTCTCATGATCGAACTGTTTTCTTAGGTTTTCTTGAGCTGAAGCCACGAATTTCGAGTTTTATTGTATGTTCTTTGTTTAATTTGTTAATTTATCAGGAATATATTAGAAATGAAGTTCATTATGGAGTTTGCTGAGGATTTGGTATTGAGACTTATGGAGGATCCAAAAGAGAGAGATCGCAGATTCAGAGAGCATATTTATGCGATCAAGGATCGGTGCCAAAAGACAAAGGAGATGTGGAGCTATCCTCTTCGTCCTTATGGATTTTGGACGTTTGACCGCCACAATTCTCAGCTGAAGTGGGACCCACAAATTAGTCAAGTTCCTGGTAGGAGGGATCCTTATGATGATATGCTTCAGGACTTCAACAATAGCTCAAAGTGATTTGTGAAGGTACTGTTTCTTATGCTTTTTCATATACAATTTGATTCCTATAAAACTGTTCGAAACTTGAATCCTTTTGTTGAGCATTTTTTGCACGGCTGACCCAGTCTTAGAATAATATGGAATGACCGGTCCTAAAAATCAACGAATATGTTACAAAGCACTTTACTGCTTCGAACTTCTAAAATCAGTTGCAGTAGACCACCCTTCCCCGTTGTTCATTTGCAGTAGAGGGCGCCGTGATCCATCACTGCCTAAAAGATGAGACTTTAGAGCCTCTCAGGATTCTATTTAATTTAAACTAGTCGTGATGACAGTTGAAAACCAATGATCCTGAGTTGTCCTCCATTGTGAAATCACAGCAGAAGCTCTCTAAAGCATTAATATTTTAGAAATTACGATAGGCTTTAAAATCCAACTGGGTTCTGCCATATTTTCGCAGTGTTTGGGTATCAGCGTGGGGGGTTTCTTTGAAAGAAATTGTGATGCTCATGAACTTTGTATTAGCCATCTGATTGTTTCATGTTGTTCCTAACCTAAGCAGAATGACATCGATAATTCTTTACTGGTTTTTAGGATTTGTTCATTGTGCATTGATGCCTCTACTTCTAAGATTTGGTCGTGTATACAAAAATTGCTTCTGTTGATGAGCTAACTCAGTTAGTCAGAGTTCTTATAATCTTATCATACCCTATAAGTAGGAAAAGGGATTATTTGAGTTTGGGAGAGAGATACCTCTAGTTAAATCCCCCTGATGTGGTTGTTGAAATACTATGCAGAATATTTGCAAGACCTCAATAATTCGGTGGTGGAAGCGGGGAAGCTCTCAAGCAATTTGTTTGAACGTTTGTTTATTGCTGTTTAATTTCTCGTGCTGTTAAGGAAGCACTTTGTGGGTTTGTATTGTCAAACAGAGATTTTGGTGCTGGAATAAACATTTTTAGCTCATAAGACTAAAAATTTCAAGTTGGTGAATTTGAGAAACCGATACCATCATTTTGTATTAGTGTTTTAAGTATACATCACTTGGAATTTCTTCTTATAGTTGATATTGATATCAAATGTTATTCATGGAGTTCTTGGTGGATTAATTCCTGATAATTTTTCGTGGAAGCCATCAAAGTAGTTGAAGCTAAGGTAATCTTAAGCCGAGCAGTGGGCTTTTGGAAATTGTACATGCTTTTCTCCTATTTTCTTTACTCTAGTTTTCATCTTTTTCAAG

mRNA sequence

ATGAAGTTCATTATGGAGTTTGCTGAGGATTTGGTATTGAGACTTATGGAGGATCCAAAAGAGAGAGATCGCAGATTCAGAGAGCATATTTATGCGATCAAGGATCGGTGCCAAAAGACAAAGGAGATGTGGAGCTATCCTCTTCGTCCTTATGGATTTTGGACGTTTGACCGCCACAATTCTCAGCTGAAGTGGGACCCACAAATTAGTCAAGTTCCTGGTAGGAGGGATCCTTATGATGATATGCTTCAGGACTTCAACAATAGCTCAAAGTGA

Coding sequence (CDS)

ATGAAGTTCATTATGGAGTTTGCTGAGGATTTGGTATTGAGACTTATGGAGGATCCAAAAGAGAGAGATCGCAGATTCAGAGAGCATATTTATGCGATCAAGGATCGGTGCCAAAAGACAAAGGAGATGTGGAGCTATCCTCTTCGTCCTTATGGATTTTGGACGTTTGACCGCCACAATTCTCAGCTGAAGTGGGACCCACAAATTAGTCAAGTTCCTGGTAGGAGGGATCCTTATGATGATATGCTTCAGGACTTCAACAATAGCTCAAAGTGA
Homology
[Close]
BLAST of CSPI05G21430 vs. TrEMBL
Match: A0A067JSF0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17960 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 3.0e-40
Identity = 77/91 (84.62%), Postives = 85/91 (93.41%), Query Frame = 1 

Query: 1  MKFIMEFAEDLVLRLMEDPKERDRRFREHIYAIKDRCQKTKEMWSYPLRPYGFWTFDRHN 60
          M FIMEFAE+L+LRLMEDPKERDR+FREH+YA+KDRCQKTKEMWSYPLRPYGFWTF+RHN
Sbjct: 1  MGFIMEFAENLILRLMEDPKERDRKFREHVYAMKDRCQKTKEMWSYPLRPYGFWTFERHN 60

Query: 61 SQLKWDPQISQVPGRRDPYDDMLQDFNNSSK 92
          SQL WD QISQVPGRRDPYDD+LQD  +S K
Sbjct: 61 SQLAWDAQISQVPGRRDPYDDLLQDSYDSRK 91

[Close]
BLAST of CSPI05G21430 vs. TrEMBL
Match: A0A0D2RCV5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G167100 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.1e-40
Identity = 77/92 (83.70%), Postives = 88/92 (95.65%), Query Frame = 1 

Query: 1  MKFIMEFAEDLVLRLMEDPKERDRRFREHIYAIKDRCQKTKEMWSYPLRPYGFWTFDRHN 60
          M FIMEFAE+LVLRLMEDPKERDR+FREH+Y++KDRC KTKEMWSYPLRPYGFWTF+RHN
Sbjct: 1  MGFIMEFAENLVLRLMEDPKERDRKFREHVYSMKDRCAKTKEMWSYPLRPYGFWTFERHN 60

Query: 61 SQLKWDPQISQVPGRRDPYDDMLQD-FNNSSK 92
          +QL+WDPQISQVPGRRDPYDD+LQD + +SSK
Sbjct: 61 AQLRWDPQISQVPGRRDPYDDLLQDSYASSSK 92

[Close]
BLAST of CSPI05G21430 vs. TrEMBL
Match: A0A0B0P8Z4_GOSAR (NADH-ubiquinone oxidoreductase 11 kDa subunit OS=Gossypium arboreum GN=F383_10607 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 6.7e-40
Identity = 76/90 (84.44%), Postives = 85/90 (94.44%), Query Frame = 1 

Query: 1  MKFIMEFAEDLVLRLMEDPKERDRRFREHIYAIKDRCQKTKEMWSYPLRPYGFWTFDRHN 60
          M FIMEFAE+LVLRLMEDPKERDR+FREH+Y++KDRC KTKEMWSYPLRPYGFWTF+RHN
Sbjct: 1  MGFIMEFAENLVLRLMEDPKERDRKFREHVYSMKDRCAKTKEMWSYPLRPYGFWTFERHN 60

Query: 61 SQLKWDPQISQVPGRRDPYDDMLQDFNNSS 91
          +QL+WDPQISQVPGRRDPYDD+LQD   SS
Sbjct: 61 AQLRWDPQISQVPGRRDPYDDLLQDSYASS 90

[Close]
BLAST of CSPI05G21430 vs. TrEMBL
Match: A9P8A9_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 3.3e-39
Identity = 76/91 (83.52%), Postives = 83/91 (91.21%), Query Frame = 1 

Query: 1  MKFIMEFAEDLVLRLMEDPKERDRRFREHIYAIKDRCQKTKEMWSYPLRPYGFWTFDRHN 60
          M FIMEFAE+LVLRLMEDPKERDR+FRE +YA+KDRCQKTKEMWSYPLRPYGFWTF+RHN
Sbjct: 1  MGFIMEFAENLVLRLMEDPKERDRKFRERVYAVKDRCQKTKEMWSYPLRPYGFWTFERHN 60

Query: 61 SQLKWDPQISQVPGRRDPYDDMLQDFNNSSK 92
          +QL WD QISQVPGRRDPYDD+LQD   S K
Sbjct: 61 AQLAWDAQISQVPGRRDPYDDLLQDSYGSPK 91

[Close]
BLAST of CSPI05G21430 vs. TrEMBL
Match: A0A0S3RM50_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.03G146700 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 1.3e-38
Identity = 73/91 (80.22%), Postives = 83/91 (91.21%), Query Frame = 1 

Query: 1  MKFIMEFAEDLVLRLMEDPKERDRRFREHIYAIKDRCQKTKEMWSYPLRPYGFWTFDRHN 60
          M FIMEFAE+LVL+LMEDPKERDRRFREH+Y +KDRC+KTKEMWSYP+RPYGFWTF+RHN
Sbjct: 1  MGFIMEFAENLVLKLMEDPKERDRRFREHVYRVKDRCEKTKEMWSYPMRPYGFWTFERHN 60

Query: 61 SQLKWDPQISQVPGRRDPYDDMLQDFNNSSK 92
          SQL WD QISQVPGRRDPYDD+LQ ++   K
Sbjct: 61 SQLAWDAQISQVPGRRDPYDDLLQHYSAPPK 91

[Close]
BLAST of CSPI05G21430 vs. TAIR10
Match: AT1G67350.1 (AT1G67350.1 unknown protein)

HSP 1 Score: 148.7 bits (374), Expect = 1.8e-36
Identity = 64/85 (75.29%), Postives = 78/85 (91.76%), Query Frame = 1 

Query: 1  MKFIMEFAEDLVLRLMEDPKERDRRFREHIYAIKDRCQKTKEMWSYPLRPYGFWTFDRHN 60
          M FIMEFAE+LVLRLME+P+ERDR+ REHIY + +RC+K KEMW+ P+RPYGFWTF+RHN
Sbjct: 1  MGFIMEFAENLVLRLMENPEERDRKAREHIYEMHERCKKIKEMWALPIRPYGFWTFERHN 60

Query: 61 SQLKWDPQISQVPGRRDPYDDMLQD 86
          +QL+WDPQISQV GRRDPYDD+L+D
Sbjct: 61 AQLRWDPQISQVAGRRDPYDDLLED 85

[Close]
BLAST of CSPI05G21430 vs. NCBI nr
Match: gi|778704596|ref|XP_011655561.1| (PREDICTED: uncharacterized protein LOC101213251 [Cucumis sativus])

HSP 1 Score: 198.0 bits (502), Expect = 7.3e-48
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 1 

Query: 1  MKFIMEFAEDLVLRLMEDPKERDRRFREHIYAIKDRCQKTKEMWSYPLRPYGFWTFDRHN 60
          MKFIMEFAEDLVLRLMEDPKERDRRFREHIYAIKDRCQKTKEMWSYPLRPYGFWTFDRHN
Sbjct: 1  MKFIMEFAEDLVLRLMEDPKERDRRFREHIYAIKDRCQKTKEMWSYPLRPYGFWTFDRHN 60

Query: 61 SQLKWDPQISQVPGRRDPYDDMLQDFNNSSK 92
          SQLKWDPQISQVPGRRDPYDDMLQDFNNSSK
Sbjct: 61 SQLKWDPQISQVPGRRDPYDDMLQDFNNSSK 91

[Close]
BLAST of CSPI05G21430 vs. NCBI nr
Match: gi|659090476|ref|XP_008446038.1| (PREDICTED: uncharacterized protein LOC103488888 [Cucumis melo])

HSP 1 Score: 191.8 bits (486), Expect = 5.2e-46
Identity = 86/91 (94.51%), Postives = 90/91 (98.90%), Query Frame = 1 

Query: 1  MKFIMEFAEDLVLRLMEDPKERDRRFREHIYAIKDRCQKTKEMWSYPLRPYGFWTFDRHN 60
          MKFIMEFAEDLVLRLMEDPKERDRRFREH+YA+KDRCQKTKEMWS PLRPYGFWTFDRHN
Sbjct: 1  MKFIMEFAEDLVLRLMEDPKERDRRFREHVYAVKDRCQKTKEMWSLPLRPYGFWTFDRHN 60

Query: 61 SQLKWDPQISQVPGRRDPYDDMLQDFNNSSK 92
          SQLKWDPQISQVPGRRDPYDD+LQDFNN+SK
Sbjct: 61 SQLKWDPQISQVPGRRDPYDDLLQDFNNNSK 91

[Close]
BLAST of CSPI05G21430 vs. NCBI nr
Match: gi|802724293|ref|XP_012085678.1| (PREDICTED: uncharacterized protein LOC105644811 [Jatropha curcas])

HSP 1 Score: 172.2 bits (435), Expect = 4.3e-40
Identity = 77/91 (84.62%), Postives = 85/91 (93.41%), Query Frame = 1 

Query: 1  MKFIMEFAEDLVLRLMEDPKERDRRFREHIYAIKDRCQKTKEMWSYPLRPYGFWTFDRHN 60
          M FIMEFAE+L+LRLMEDPKERDR+FREH+YA+KDRCQKTKEMWSYPLRPYGFWTF+RHN
Sbjct: 1  MGFIMEFAENLILRLMEDPKERDRKFREHVYAMKDRCQKTKEMWSYPLRPYGFWTFERHN 60

Query: 61 SQLKWDPQISQVPGRRDPYDDMLQDFNNSSK 92
          SQL WD QISQVPGRRDPYDD+LQD  +S K
Sbjct: 61 SQLAWDAQISQVPGRRDPYDDLLQDSYDSRK 91

[Close]
BLAST of CSPI05G21430 vs. NCBI nr
Match: gi|823158629|ref|XP_012479146.1| (PREDICTED: uncharacterized protein LOC105794504 [Gossypium raimondii])

HSP 1 Score: 171.4 bits (433), Expect = 7.3e-40
Identity = 77/92 (83.70%), Postives = 88/92 (95.65%), Query Frame = 1 

Query: 1  MKFIMEFAEDLVLRLMEDPKERDRRFREHIYAIKDRCQKTKEMWSYPLRPYGFWTFDRHN 60
          M FIMEFAE+LVLRLMEDPKERDR+FREH+Y++KDRC KTKEMWSYPLRPYGFWTF+RHN
Sbjct: 1  MGFIMEFAENLVLRLMEDPKERDRKFREHVYSMKDRCAKTKEMWSYPLRPYGFWTFERHN 60

Query: 61 SQLKWDPQISQVPGRRDPYDDMLQD-FNNSSK 92
          +QL+WDPQISQVPGRRDPYDD+LQD + +SSK
Sbjct: 61 AQLRWDPQISQVPGRRDPYDDLLQDSYASSSK 92

[Close]
BLAST of CSPI05G21430 vs. NCBI nr
Match: gi|728841914|gb|KHG21357.1| (NADH-ubiquinone oxidoreductase 11 kDa subunit [Gossypium arboreum])

HSP 1 Score: 171.0 bits (432), Expect = 9.6e-40
Identity = 76/90 (84.44%), Postives = 85/90 (94.44%), Query Frame = 1 

Query: 1  MKFIMEFAEDLVLRLMEDPKERDRRFREHIYAIKDRCQKTKEMWSYPLRPYGFWTFDRHN 60
          M FIMEFAE+LVLRLMEDPKERDR+FREH+Y++KDRC KTKEMWSYPLRPYGFWTF+RHN
Sbjct: 1  MGFIMEFAENLVLRLMEDPKERDRKFREHVYSMKDRCAKTKEMWSYPLRPYGFWTFERHN 60

Query: 61 SQLKWDPQISQVPGRRDPYDDMLQDFNNSS 91
          +QL+WDPQISQVPGRRDPYDD+LQD   SS
Sbjct: 61 AQLRWDPQISQVPGRRDPYDDLLQDSYASS 90

The following BLAST results are available for this feature:
BLAST of CSPI05G21430 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI05G21430 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A067JSF0_JATCU3.0e-4084.62Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17960 PE=4 SV=1[more]
A0A0D2RCV5_GOSRA5.1e-4083.70Uncharacterized protein OS=Gossypium raimondii GN=B456_005G167100 PE=4 SV=1[more]
A0A0B0P8Z4_GOSAR6.7e-4084.44NADH-ubiquinone oxidoreductase 11 kDa subunit OS=Gossypium arboreum GN=F383_1060... [more]
A9P8A9_POPTR3.3e-3983.52Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1[more]
A0A0S3RM50_PHAAN1.3e-3880.22Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.03G146700 PE=... [more]
BLAST of CSPI05G21430 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G67350.11.8e-3675.29 unknown protein[more]
BLAST of CSPI05G21430 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778704596|ref|XP_011655561.1|7.3e-48100.00PREDICTED: uncharacterized protein LOC101213251 [Cucumis sativus][more]
gi|659090476|ref|XP_008446038.1|5.2e-4694.51PREDICTED: uncharacterized protein LOC103488888 [Cucumis melo][more]
gi|802724293|ref|XP_012085678.1|4.3e-4084.62PREDICTED: uncharacterized protein LOC105644811 [Jatropha curcas][more]
gi|823158629|ref|XP_012479146.1|7.3e-4083.70PREDICTED: uncharacterized protein LOC105794504 [Gossypium raimondii][more]
gi|728841914|gb|KHG21357.1|9.6e-4084.44NADH-ubiquinone oxidoreductase 11 kDa subunit [Gossypium arboreum][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI05G21430.1CSPI05G21430.1mRNA
CSPI05G21430.2CSPI05G21430.2mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR37709FAMILY NOT NAMEDcoord: 35..121
score: 1.7
NoneNo IPR availablePANTHERPTHR37709:SF1SUBFAMILY NOT NAMEDcoord: 35..121
score: 1.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI05G21430Cla022965Watermelon (97103) v1cpiwmB444
CSPI05G21430MELO3C011867Melon (DHL92) v3.5.1cpimeB369
CSPI05G21430ClCG11G013680Watermelon (Charleston Gray)cpiwcgB369
CSPI05G21430Lsi04G006810Bottle gourd (USVL1VR-Ls)cpilsiB372
CSPI05G21430MELO3C011867.2Melon (DHL92) v3.6.1cpimedB363
CSPI05G21430CsaV3_5G030290Cucumber (Chinese Long) v3cpicucB284
CSPI05G21430Cla97C11G219590Watermelon (97103) v2cpiwmbB373
CSPI05G21430Bhi07G001528Wax gourdcpiwgoB516
CSPI05G21430Cucsa.075680Cucumber (Gy14) v1cgycpiB076
CSPI05G21430CmaCh04G018340Cucurbita maxima (Rimu)cmacpiB758
CSPI05G21430CmaCh18G006960Cucurbita maxima (Rimu)cmacpiB419
CSPI05G21430CmoCh18G006830Cucurbita moschata (Rifu)cmocpiB407
CSPI05G21430CmoCh04G019300Cucurbita moschata (Rifu)cmocpiB748
CSPI05G21430Cp4.1LG01g16220Cucurbita pepo (Zucchini)cpecpiB440
CSPI05G21430Cp4.1LG09g05980Cucurbita pepo (Zucchini)cpecpiB042
CSPI05G21430CsGy5G020950Cucumber (Gy14) v2cgybcpiB225
CSPI05G21430Carg21229Silver-seed gourdcarcpiB0727
CSPI05G21430Carg19258Silver-seed gourdcarcpiB0331
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI05G21430Cucurbita pepo (Zucchini)cpecpiB837
CSPI05G21430Bottle gourd (USVL1VR-Ls)cpilsiB392
CSPI05G21430Melon (DHL92) v3.6.1cpimedB383
CSPI05G21430Cucumber (Gy14) v2cgybcpiB077
CSPI05G21430Cucumber (Gy14) v2cgybcpiB233
CSPI05G21430Silver-seed gourdcarcpiB0657
CSPI05G21430Cucumber (Chinese Long) v3cpicucB261
CSPI05G21430Watermelon (97103) v2cpiwmbB421
CSPI05G21430Wax gourdcpiwgoB491
CSPI05G21430Wild cucumber (PI 183967)cpicpiB076
CSPI05G21430Cucumber (Gy14) v1cgycpiB580
CSPI05G21430Cucurbita maxima (Rimu)cmacpiB190
CSPI05G21430Cucurbita moschata (Rifu)cmocpiB176
CSPI05G21430Cucumber (Chinese Long) v2cpicuB220
CSPI05G21430Cucumber (Chinese Long) v2cpicuB239
CSPI05G21430Melon (DHL92) v3.5.1cpimeB389
CSPI05G21430Watermelon (Charleston Gray)cpiwcgB429
CSPI05G21430Watermelon (97103) v1cpiwmB382