Cp4.1LG09g02900 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG09g02900
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG09 : 1759546 .. 1760400 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCGCATCCTAATCAGAGAACTGTTAGCGACAGAAAGTTCAAACAGTCGACGAATTTCTCTGGAGATCCGAAAATGAGGAGAAAAGTTCGTATAATCTGTTATGATCCTGATGCAACGGACGCGTCTTCAAGCGAAGATGAAGGAGAAGTATACGGAAGATTAAGAAGAAGATTGAACAAAAAAAACCGAATCATACACGAAATCGACCTGCCTACGCCGATGAACGCTCCCGAATCTAAGAGTTCTAAGAACAGCAACAATGGAAACAACAACCCTAAGTCTCGAAGATTATCGTCTTCGAAATACAAAGGTGTGAGACAGAGACCTTGGGGGAAATGGGCGGCGGAGATTCGAGATCCGTTCAAAAGAAGCCGTGTTTGGCTAGGAACTTACGACACTGCTGAAGAAGCTTATCAAGCCTATGAATCGAAGCGGTTGCAGTTTGAAGCTACGGCAGCGGAAATGGCTACTGGCAACGGCACTGTGTCAGAGCAGACTGATTCTTCGGTGAGCACGACGGAGACCACCATGTCACACACATCTCCGCCGTCTGTTCTCGAATGGAACGATTCAACTTCTCAAAGCCGAGAGGGAGATTCAATCAAAGAAAAAACAGACACAAATATGAACTATCTTCAAGAAGCGGATCTGGGGAATGAATTTGGTTGGAGTCTGGCTGATGGAATCGGGATGTTCTTGGACGATTTTGCAAGTCTAGACAACACCCAATTTTTTGCGTTTGCCGATGCTGATGATGAACCTTGCTTCCTTCCAAATTTCGATTGTGATCATATATGGAATGCTGAGATTTCTAGTTGGCTTGATGAACCGATCAACATAACTTGTTCATAA

mRNA sequence

ATGCCGCATCCTAATCAGAGAACTGTTAGCGACAGAAAGTTCAAACAGTCGACGAATTTCTCTGGAGATCCGAAAATGAGGAGAAAAGTTCGTATAATCTGTTATGATCCTGATGCAACGGACGCGTCTTCAAGCGAAGATGAAGGAGAAACTGATTCTTCGGTGAGCACGACGGAGACCACCATGTCACACACATCTCCGCCGTCTGTTCTCGAATGGAACGATTCAACTTCTCAAAGCCGAGAGGGAGATTCAATCAAAGAAAAAACAGACACAAATATGAACTATCTTCAAGAAGCGGATCTGGGGAATGAATTTGGTTGGAGTCTGGCTGATGGAATCGGGATGTTCTTGGACGATTTTGCAAGTCTAGACAACACCCAATTTTTTGCGTTTGCCGATGCTGATGATGAACCTTGCTTCCTTCCAAATTTCGATTGTGATCATATATGGAATGCTGAGATTTCTAGTTGGCTTGATGAACCGATCAACATAACTTGTTCATAA

Coding sequence (CDS)

ATGCCGCATCCTAATCAGAGAACTGTTAGCGACAGAAAGTTCAAACAGTCGACGAATTTCTCTGGAGATCCGAAAATGAGGAGAAAAGTTCGTATAATCTGTTATGATCCTGATGCAACGGACGCGTCTTCAAGCGAAGATGAAGGAGAAACTGATTCTTCGGTGAGCACGACGGAGACCACCATGTCACACACATCTCCGCCGTCTGTTCTCGAATGGAACGATTCAACTTCTCAAAGCCGAGAGGGAGATTCAATCAAAGAAAAAACAGACACAAATATGAACTATCTTCAAGAAGCGGATCTGGGGAATGAATTTGGTTGGAGTCTGGCTGATGGAATCGGGATGTTCTTGGACGATTTTGCAAGTCTAGACAACACCCAATTTTTTGCGTTTGCCGATGCTGATGATGAACCTTGCTTCCTTCCAAATTTCGATTGTGATCATATATGGAATGCTGAGATTTCTAGTTGGCTTGATGAACCGATCAACATAACTTGTTCATAA

Protein sequence

MPHPNQRTVSDRKFKQSTNFSGDPKMRRKVRIICYDPDATDASSSEDEGETDSSVSTTETTMSHTSPPSVLEWNDSTSQSREGDSIKEKTDTNMNYLQEADLGNEFGWSLADGIGMFLDDFASLDNTQFFAFADADDEPCFLPNFDCDHIWNAEISSWLDEPINITCS
Homology
[Close]
BLAST of Cp4.1LG09g02900 vs. TrEMBL
Match: A0A0A0KWF1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G609620 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.0e-25
Identity = 80/146 (54.79%), Postives = 94/146 (64.38%), Query Frame = 1 

Query: 42  ASSSEDEGETDSSV-----STTETTMSHTSPPSVLEWNDSTSQS---REG-DSIKEKTDT 101
           A   E +G   SS      ST ETT+SHTSP SVLEW DST QS   +EG +SIKE+TD+
Sbjct: 166 AVEEEGKGSGSSSTPVFSESTAETTVSHTSPSSVLEWADSTVQSHDLKEGTESIKEETDS 225

Query: 102 NMNYLQEAD----------LGNEFGWSLADGIGMFLDDFASLDNTQFFAFADADDEPCFL 161
           NMNYLQE D          +G +F   LADGIGMFL+DFAS DNTQ      ADDEP  L
Sbjct: 226 NMNYLQEGDPSNPFMEEISMGIDFDSILADGIGMFLEDFASFDNTQILGL--ADDEPSGL 285

Query: 162 PNFDCDHIWNAEISSWLDEPINITCS 169
           P++D +   N +IS WLD+ INITCS
Sbjct: 286 PSWDFEDFGNDDISCWLDDSINITCS 309

[Close]
BLAST of Cp4.1LG09g02900 vs. TrEMBL
Match: A0A0A0K880_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G039270 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.9e-08
Identity = 54/143 (37.76%), Postives = 76/143 (53.15%), Query Frame = 1 

Query: 40  TDASSSEDEGETDSSVSTTETTMSHTSPPS-VLEWNDSTSQSREGDSIKEKTDTNM-NYL 99
           T +SSS +E E +S     ++ +S TSP + +LE   S+S   + D  +E  DTN+ N L
Sbjct: 184 TSSSSSSEENEEES-----DSVVSQTSPAAAILEMETSSSVLIKEDE-EEMIDTNLINEL 243

Query: 100 QEADLG------------NEFGWSLADGIGMFLDDFASLDNTQFFAFADADDEPCFLPNF 159
           Q  DLG             E      D IG FLDDF+++D+ Q + F D  D P  LP+ 
Sbjct: 244 QVPDLGFVDEGMEINLGLPELDPFFMDDIGQFLDDFSAMDDIQIYGFDD--DVPSCLPDC 303

Query: 160 DCDHIWNAEISSWLDEPINITCS 169
           D D   N +IS W+DE +N+ CS
Sbjct: 304 DFDDFGNDDISCWVDEALNVPCS 318

[Close]
BLAST of Cp4.1LG09g02900 vs. TrEMBL
Match: W9RLP9_9ROSA (Ethylene-responsive transcription factor OS=Morus notabilis GN=L484_014665 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 3.0e-06
Identity = 53/162 (32.72%), Postives = 71/162 (43.83%), Query Frame = 1 

Query: 39  ATDASSSEDEGETDSSVSTTETTMSHTSPPSVLEWNDSTSQSRE---------------- 98
           A  A S  D   + SS   +E + SH SP SVLE   STS S                  
Sbjct: 181 AAVAKSQNDTVLSSSSSEDSEVSQSHNSPSSVLEPETSTSASAPPLASASSSASESNLNV 240

Query: 99  --GDSIKEKTDTNMNYL-------------QEADLGNEFGWSLADGIGMFL-DDFASLDN 158
              D +K+  D +M  L             QE  L  EF   L D  G FL DDF+S+D+
Sbjct: 241 NGADLVKKSVDVDMLDLSFMDEALASLPFEQELGLAPEFDQLLLDDFGQFLNDDFSSIDD 300

Query: 159 TQFFAFADADDEPCFLPNFDCDHIWNAEISSWLDEPINITCS 169
            Q F F     EP  LP+ D + +   +++ W+D+ +NI CS
Sbjct: 301 VQIFGFDGV--EPSELPDCDFEDLGKDDMACWMDDALNIPCS 340

[Close]
BLAST of Cp4.1LG09g02900 vs. NCBI nr
Match: gi|449434636|ref|XP_004135102.1| (PREDICTED: ethylene-responsive transcription factor ERF118-like [Cucumis sativus])

HSP 1 Score: 124.8 bits (312), Expect = 1.4e-25
Identity = 80/146 (54.79%), Postives = 94/146 (64.38%), Query Frame = 1 

Query: 42  ASSSEDEGETDSSV-----STTETTMSHTSPPSVLEWNDSTSQS---REG-DSIKEKTDT 101
           A   E +G   SS      ST ETT+SHTSP SVLEW DST QS   +EG +SIKE+TD+
Sbjct: 166 AVEEEGKGSGSSSTPVFSESTAETTVSHTSPSSVLEWADSTVQSHDLKEGTESIKEETDS 225

Query: 102 NMNYLQEAD----------LGNEFGWSLADGIGMFLDDFASLDNTQFFAFADADDEPCFL 161
           NMNYLQE D          +G +F   LADGIGMFL+DFAS DNTQ      ADDEP  L
Sbjct: 226 NMNYLQEGDPSNPFMEEISMGIDFDSILADGIGMFLEDFASFDNTQILGL--ADDEPSGL 285

Query: 162 PNFDCDHIWNAEISSWLDEPINITCS 169
           P++D +   N +IS WLD+ INITCS
Sbjct: 286 PSWDFEDFGNDDISCWLDDSINITCS 309

[Close]
BLAST of Cp4.1LG09g02900 vs. NCBI nr
Match: gi|659091526|ref|XP_008446593.1| (PREDICTED: ethylene-responsive transcription factor ERF118-like [Cucumis melo])

HSP 1 Score: 122.1 bits (305), Expect = 9.3e-25
Identity = 76/130 (58.46%), Postives = 89/130 (68.46%), Query Frame = 1 

Query: 54  SVSTTETTMSHTSPPSVLEWNDSTSQS---REG-DSIKEKTDTNMNYLQEADLGN----- 113
           S ST ETT+SHTSP SVLEW DST QS   +EG +SIKE+TD+NMNYLQE D GN     
Sbjct: 183 SESTAETTVSHTSPSSVLEWADSTVQSHDLKEGTESIKEETDSNMNYLQEGDPGNPFIDE 242

Query: 114 -----EFGWSLADGIGMFLDDFASLDNTQFFAFADADDEPC-FLPNFDCDHIWNAEISSW 169
                +F   LADGIGMFL+DFAS D+TQ      ADDEP   LP++D +   N +IS W
Sbjct: 243 INMGIDFDSILADGIGMFLEDFASFDDTQILGL--ADDEPSGRLPSWDFEDFGNDDISCW 302

[Close]
BLAST of Cp4.1LG09g02900 vs. NCBI nr
Match: gi|449446199|ref|XP_004140859.1| (PREDICTED: ethylene-responsive transcription factor ERF118 [Cucumis sativus])

HSP 1 Score: 67.4 bits (163), Expect = 2.7e-08
Identity = 54/143 (37.76%), Postives = 76/143 (53.15%), Query Frame = 1 

Query: 40  TDASSSEDEGETDSSVSTTETTMSHTSPPS-VLEWNDSTSQSREGDSIKEKTDTNM-NYL 99
           T +SSS +E E +S     ++ +S TSP + +LE   S+S   + D  +E  DTN+ N L
Sbjct: 184 TSSSSSSEENEEES-----DSVVSQTSPAAAILEMETSSSVLIKEDE-EEMIDTNLINEL 243

Query: 100 QEADLG------------NEFGWSLADGIGMFLDDFASLDNTQFFAFADADDEPCFLPNF 159
           Q  DLG             E      D IG FLDDF+++D+ Q + F D  D P  LP+ 
Sbjct: 244 QVPDLGFVDEGMEINLGLPELDPFFMDDIGQFLDDFSAMDDIQIYGFDD--DVPSCLPDC 303

Query: 160 DCDHIWNAEISSWLDEPINITCS 169
           D D   N +IS W+DE +N+ CS
Sbjct: 304 DFDDFGNDDISCWVDEALNVPCS 318

[Close]
BLAST of Cp4.1LG09g02900 vs. NCBI nr
Match: gi|659089721|ref|XP_008445662.1| (PREDICTED: ethylene-responsive transcription factor ERF118 [Cucumis melo])

HSP 1 Score: 66.6 bits (161), Expect = 4.6e-08
Identity = 49/142 (34.51%), Postives = 74/142 (52.11%), Query Frame = 1 

Query: 40  TDASSSEDEGETDSSVSTTETTMSHTSPPSVLEWNDSTSQSREGDSIKEKTDTNM-NYLQ 99
           T +SSS +E E +S     ++ +S T P + +   +++S +   +  +E  DTN+ N LQ
Sbjct: 185 TSSSSSSEENEEES-----DSVVSQTFPAAAIIEMETSSSALIKEDEEEVIDTNLINELQ 244

Query: 100 EADLG------------NEFGWSLADGIGMFLDDFASLDNTQFFAFADADDEPCFLPNFD 159
             DLG             E      D IG FLDDF+++D+ Q + F D  D P  LP+ D
Sbjct: 245 VPDLGFVDEGMEINLGLPELDQFFMDDIGQFLDDFSAMDDIQIYGFDD--DVPSCLPDCD 304

Query: 160 CDHIWNAEISSWLDEPINITCS 169
            D   N +IS W+DE +N+ CS
Sbjct: 305 FDDFGNDDISCWVDEALNVPCS 319

[Close]
BLAST of Cp4.1LG09g02900 vs. NCBI nr
Match: gi|703127217|ref|XP_010103775.1| (Ethylene-responsive transcription factor [Morus notabilis])

HSP 1 Score: 60.1 bits (144), Expect = 4.4e-06
Identity = 53/162 (32.72%), Postives = 71/162 (43.83%), Query Frame = 1 

Query: 39  ATDASSSEDEGETDSSVSTTETTMSHTSPPSVLEWNDSTSQSRE---------------- 98
           A  A S  D   + SS   +E + SH SP SVLE   STS S                  
Sbjct: 181 AAVAKSQNDTVLSSSSSEDSEVSQSHNSPSSVLEPETSTSASAPPLASASSSASESNLNV 240

Query: 99  --GDSIKEKTDTNMNYL-------------QEADLGNEFGWSLADGIGMFL-DDFASLDN 158
              D +K+  D +M  L             QE  L  EF   L D  G FL DDF+S+D+
Sbjct: 241 NGADLVKKSVDVDMLDLSFMDEALASLPFEQELGLAPEFDQLLLDDFGQFLNDDFSSIDD 300

Query: 159 TQFFAFADADDEPCFLPNFDCDHIWNAEISSWLDEPINITCS 169
            Q F F     EP  LP+ D + +   +++ W+D+ +NI CS
Sbjct: 301 VQIFGFDGV--EPSELPDCDFEDLGKDDMACWMDDALNIPCS 340

The following BLAST results are available for this feature:
BLAST of Cp4.1LG09g02900 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG09g02900 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KWF1_CUCSA1.0e-2554.79Uncharacterized protein OS=Cucumis sativus GN=Csa_5G609620 PE=4 SV=1[more]
A0A0A0K880_CUCSA1.9e-0837.76Uncharacterized protein OS=Cucumis sativus GN=Csa_6G039270 PE=4 SV=1[more]
W9RLP9_9ROSA3.0e-0632.72Ethylene-responsive transcription factor OS=Morus notabilis GN=L484_014665 PE=4 ... [more]
BLAST of Cp4.1LG09g02900 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG09g02900 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449434636|ref|XP_004135102.1|1.4e-2554.79PREDICTED: ethylene-responsive transcription factor ERF118-like [Cucumis sativus... [more]
gi|659091526|ref|XP_008446593.1|9.3e-2558.46PREDICTED: ethylene-responsive transcription factor ERF118-like [Cucumis melo][more]
gi|449446199|ref|XP_004140859.1|2.7e-0837.76PREDICTED: ethylene-responsive transcription factor ERF118 [Cucumis sativus][more]
gi|659089721|ref|XP_008445662.1|4.6e-0834.51PREDICTED: ethylene-responsive transcription factor ERF118 [Cucumis melo][more]
gi|703127217|ref|XP_010103775.1|4.4e-0632.72Ethylene-responsive transcription factor [Morus notabilis][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0003674 molecular_function
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG09g02900.1Cp4.1LG09g02900.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG09g02900Cucsa.283620Cucumber (Gy14) v1cgycpeB0745
Cp4.1LG09g02900CmaCh18G010250Cucurbita maxima (Rimu)cmacpeB415
Cp4.1LG09g02900CmaCh04G015160Cucurbita maxima (Rimu)cmacpeB700
Cp4.1LG09g02900CmoCh04G015830Cucurbita moschata (Rifu)cmocpeB651
Cp4.1LG09g02900CmoCh18G010350Cucurbita moschata (Rifu)cmocpeB376
Cp4.1LG09g02900Cla020392Watermelon (97103) v1cpewmB031
Cp4.1LG09g02900Csa5G609620Cucumber (Chinese Long) v2cpecuB041
Cp4.1LG09g02900MELO3C012242Melon (DHL92) v3.5.1cpemeB024
Cp4.1LG09g02900ClCG05G022760Watermelon (Charleston Gray)cpewcgB045
Cp4.1LG09g02900CSPI05G25220Wild cucumber (PI 183967)cpecpiB036
Cp4.1LG09g02900Lsi04G002590Bottle gourd (USVL1VR-Ls)cpelsiB032
Cp4.1LG09g02900MELO3C012242.2Melon (DHL92) v3.6.1cpemedB028
Cp4.1LG09g02900CsaV3_5G034270Cucumber (Chinese Long) v3cpecucB0043
Cp4.1LG09g02900Bhi07G001109Wax gourdcpewgoB0058
Cp4.1LG09g02900CsGy5G024690Cucumber (Gy14) v2cgybcpeB581
Cp4.1LG09g02900Carg21585Silver-seed gourdcarcpeB1448
Cp4.1LG09g02900Carg01836Silver-seed gourdcarcpeB1169
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG09g02900Cp4.1LG01g13660Cucurbita pepo (Zucchini)cpecpeB040
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG09g02900Cucumber (Gy14) v2cgybcpeB010
Cp4.1LG09g02900Melon (DHL92) v3.6.1cpemedB039
Cp4.1LG09g02900Silver-seed gourdcarcpeB0645
Cp4.1LG09g02900Cucumber (Chinese Long) v3cpecucB0020
Cp4.1LG09g02900Cucumber (Chinese Long) v3cpecucB0026
Cp4.1LG09g02900Wax gourdcpewgoB0029
Cp4.1LG09g02900Cucurbita pepo (Zucchini)cpecpeB022
Cp4.1LG09g02900Cucurbita pepo (Zucchini)cpecpeB026
Cp4.1LG09g02900Cucurbita pepo (Zucchini)cpecpeB037
Cp4.1LG09g02900Cucurbita pepo (Zucchini)cpecpeB054
Cp4.1LG09g02900Cucurbita maxima (Rimu)cmacpeB072
Cp4.1LG09g02900Cucurbita maxima (Rimu)cmacpeB105
Cp4.1LG09g02900Cucurbita maxima (Rimu)cmacpeB300
Cp4.1LG09g02900Cucurbita maxima (Rimu)cmacpeB698
Cp4.1LG09g02900Cucurbita moschata (Rifu)cmocpeB046
Cp4.1LG09g02900Cucurbita moschata (Rifu)cmocpeB081
Cp4.1LG09g02900Cucurbita moschata (Rifu)cmocpeB263
Cp4.1LG09g02900Cucurbita moschata (Rifu)cmocpeB650
Cp4.1LG09g02900Wild cucumber (PI 183967)cpecpiB023
Cp4.1LG09g02900Wild cucumber (PI 183967)cpecpiB018
Cp4.1LG09g02900Cucumber (Chinese Long) v2cpecuB024
Cp4.1LG09g02900Cucumber (Chinese Long) v2cpecuB028
Cp4.1LG09g02900Bottle gourd (USVL1VR-Ls)cpelsiB024
Cp4.1LG09g02900Bottle gourd (USVL1VR-Ls)cpelsiB041
Cp4.1LG09g02900Watermelon (Charleston Gray)cpewcgB049
Cp4.1LG09g02900Watermelon (97103) v1cpewmB052
Cp4.1LG09g02900Watermelon (97103) v1cpewmB059
Cp4.1LG09g02900Melon (DHL92) v3.5.1cpemeB034