Cp4.1LG09g02650 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG09g02650
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	nudix hydrolase 1
Location	Cp4.1LG09 : 1536542 .. 1536802 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGAAGAGACGGGGCTGGATATTGAGAAGGTTGAGTTTTTGAAAGTGACCAATAATTTGTTTTTGGATCAGCCAACGCCGGCTCATTATGTGGTGGTGTTCGTGCGGGCGGTGTTGGCTGATCCCATGCAAACTCCGCTCAATCTTGAGCCTGACAAATGTGGTGGCTGGGATTGGTATGAATGGGATAGTCTGCCCAAGCCACTCTTTGGTCCCATCAAAGCAATGGTTATGGAGGGCTTCAATCCTTTCCCATAA

mRNA sequence

ATGAAGGAAGAGACGGGGCTGGATATTGAGAAGGTTGAGTTTTTGAAAGTGACCAATAATTTGTTTTTGGATCAGCCAACGCCGGCTCATTATGTGGTGGTGTTCGTGCGGGCGGTGTTGGCTGATCCCATGCAAACTCCGCTCAATCTTGAGCCTGACAAATGTGGTGGCTGGGATTGGTATGAATGGGATAGTCTGCCCAAGCCACTCTTTGGTCCCATCAAAGCAATGGTTATGGAGGGCTTCAATCCTTTCCCATAA

Coding sequence (CDS)

ATGAAGGAAGAGACGGGGCTGGATATTGAGAAGGTTGAGTTTTTGAAAGTGACCAATAATTTGTTTTTGGATCAGCCAACGCCGGCTCATTATGTGGTGGTGTTCGTGCGGGCGGTGTTGGCTGATCCCATGCAAACTCCGCTCAATCTTGAGCCTGACAAATGTGGTGGCTGGGATTGGTATGAATGGGATAGTCTGCCCAAGCCACTCTTTGGTCCCATCAAAGCAATGGTTATGGAGGGCTTCAATCCTTTCCCATAA

Protein sequence

MKEETGLDIEKVEFLKVTNNLFLDQPTPAHYVVVFVRAVLADPMQTPLNLEPDKCGGWDWYEWDSLPKPLFGPIKAMVMEGFNPFP

Homology

[Close]

BLAST of Cp4.1LG09g02650 vs. Swiss-Prot
Match: NUDT1_ARATH (Nudix hydrolase 1 OS=Arabidopsis thaliana GN=NUDT1 PE=1 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 7.1e-29
Identity = 52/83 (62.65%), Postives = 66/83 (79.52%), Query Frame = 1


Query: 3   EETGLDIEKVEFLKVTNNLFLDQPTPAHYVVVFVRAVLADPMQTPLNLEPDKCGGWDWYE 62
           EETGL IEK++ L VTNN+F + PTP+HYV V +RAVL DP Q P N+EP+KC GWDWY+
Sbjct: 59  EETGLKIEKMKLLTVTNNVFKEAPTPSHYVSVSIRAVLVDPSQEPKNMEPEKCEGWDWYD 118

Query: 63  WDSLPKPLFGPIKAMVMEGFNPF 86
           W++LPKPLF P++ +   GFNPF
Sbjct: 119 WENLPKPLFWPLEKLFGSGFNPF 141

[Close]

BLAST of Cp4.1LG09g02650 vs. TrEMBL
Match: A0A0A0KR28_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G608210 PE=3 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 5.3e-39
Identity = 72/86 (83.72%), Postives = 78/86 (90.70%), Query Frame = 1


Query: 1   MKEETGLDIEKVEFLKVTNNLFLDQPTPAHYVVVFVRAVLADPMQTPLNLEPDKCGGWDW 60
           +KEETGLDIEK+EFLKVTNNLF+DQP PAHYVVVFVRAVL DP QTP+NLEP+KC GWDW
Sbjct: 78  IKEETGLDIEKIEFLKVTNNLFMDQPKPAHYVVVFVRAVLTDPTQTPINLEPEKCDGWDW 137

Query: 61  YEWDSLPKPLFGPIKAMVMEGFNPFP 87
           YEWD LP PLFGPIK MV +GFNPFP
Sbjct: 138 YEWDKLPHPLFGPIKKMVTDGFNPFP 163

[Close]

BLAST of Cp4.1LG09g02650 vs. TrEMBL
Match: A0A067K2T5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18264 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 4.3e-33
Identity = 60/86 (69.77%), Postives = 74/86 (86.05%), Query Frame = 1


Query: 1   MKEETGLDIEKVEFLKVTNNLFLDQPTPAHYVVVFVRAVLADPMQTPLNLEPDKCGGWDW 60
           MKEETGLDI K+EF+ VTN++FL++P P+HYV +F+RA LADP Q P NLEP+KC GWDW
Sbjct: 139 MKEETGLDIAKIEFVTVTNHVFLEEPKPSHYVTIFLRAFLADPKQEPQNLEPEKCYGWDW 198

Query: 61  YEWDSLPKPLFGPIKAMVMEGFNPFP 87
           Y+WD+LPKPLFGP++ MV  GFNPFP
Sbjct: 199 YDWDNLPKPLFGPLEKMVQSGFNPFP 224

[Close]

BLAST of Cp4.1LG09g02650 vs. TrEMBL
Match: V4TH94_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033020mg PE=3 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 4.3e-33
Identity = 60/86 (69.77%), Postives = 75/86 (87.21%), Query Frame = 1


Query: 1   MKEETGLDIEKVEFLKVTNNLFLDQPTPAHYVVVFVRAVLADPMQTPLNLEPDKCGGWDW 60
           +KEETGLDIEK+EFL VTN++FL+ P P+HYVV+F+RA LADP+Q P NLEPDKC GWDW
Sbjct: 54  LKEETGLDIEKIEFLTVTNSVFLENPKPSHYVVIFLRAALADPLQEPQNLEPDKCHGWDW 113

Query: 61  YEWDSLPKPLFGPIKAMVMEGFNPFP 87
           Y+W++LP+PLF P++ MV  GFNPFP
Sbjct: 114 YDWNNLPQPLFWPLEKMVQSGFNPFP 139

[Close]

BLAST of Cp4.1LG09g02650 vs. TrEMBL
Match: A0A061EB50_THECC (Nudix hydrolase 1 OS=Theobroma cacao GN=TCM_011890 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 6.9e-31
Identity = 58/86 (67.44%), Postives = 72/86 (83.72%), Query Frame = 1


Query: 1   MKEETGLDIEKVEFLKVTNNLFLDQPTPAHYVVVFVRAVLADPMQTPLNLEPDKCGGWDW 60
           +KEETGL++ K +FL VTNNLFL++  PAHYV +F+RAVLADP Q P NLEP+KC GWDW
Sbjct: 64  LKEETGLEMGKADFLTVTNNLFLEETKPAHYVTIFLRAVLADPNQVPQNLEPNKCHGWDW 123

Query: 61  YEWDSLPKPLFGPIKAMVMEGFNPFP 87
           Y+WD+LP+PLF P++ MV  GFNPFP
Sbjct: 124 YDWDNLPQPLFWPLEKMVRSGFNPFP 149

[Close]

BLAST of Cp4.1LG09g02650 vs. TrEMBL
Match: A0A0A0KV11_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G577370 PE=3 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 5.9e-30
Identity = 58/86 (67.44%), Postives = 68/86 (79.07%), Query Frame = 1


Query: 1   MKEETGLDIEKVEFLKVTNNLFLDQPTPAHYVVVFVRAVLADPMQTPLNLEPDKCGGWDW 60
           +KEETGLDIEK EFL VTN  FL+ P P+HYV + +RAVL+DP Q P NLEP+KC GWDW
Sbjct: 65  VKEETGLDIEKTEFLTVTNVPFLNDPKPSHYVTISMRAVLSDPSQVPENLEPNKCSGWDW 124

Query: 61  YEWDSLPKPLFGPIKAMVMEGFNPFP 87
           Y+WD LP PLF P+K M+  GFNPFP
Sbjct: 125 YDWDHLPNPLFWPMKKMIRSGFNPFP 150

[Close]

BLAST of Cp4.1LG09g02650 vs. TAIR10
Match: AT1G68760.1 (AT1G68760.1 nudix hydrolase 1)

HSP 1 Score: 127.5 bits (319), Expect = 4.0e-30
Identity = 52/83 (62.65%), Postives = 66/83 (79.52%), Query Frame = 1


Query: 3   EETGLDIEKVEFLKVTNNLFLDQPTPAHYVVVFVRAVLADPMQTPLNLEPDKCGGWDWYE 62
           EETGL IEK++ L VTNN+F + PTP+HYV V +RAVL DP Q P N+EP+KC GWDWY+
Sbjct: 59  EETGLKIEKMKLLTVTNNVFKEAPTPSHYVSVSIRAVLVDPSQEPKNMEPEKCEGWDWYD 118

Query: 63  WDSLPKPLFGPIKAMVMEGFNPF 86
           W++LPKPLF P++ +   GFNPF
Sbjct: 119 WENLPKPLFWPLEKLFGSGFNPF 141

[Close]

BLAST of Cp4.1LG09g02650 vs. NCBI nr
Match: gi|659091409|ref|XP_008446534.1| (PREDICTED: nudix hydrolase 1-like [Cucumis melo])

HSP 1 Score: 169.5 bits (428), Expect = 2.6e-39
Identity = 73/86 (84.88%), Postives = 80/86 (93.02%), Query Frame = 1


Query: 1   MKEETGLDIEKVEFLKVTNNLFLDQPTPAHYVVVFVRAVLADPMQTPLNLEPDKCGGWDW 60
           +KEETGLDI K+EFLKVTNNLF+DQP PAHYVVVFVRAVL DP QTPLNLEP+KC GWDW
Sbjct: 124 IKEETGLDIGKIEFLKVTNNLFMDQPKPAHYVVVFVRAVLTDPTQTPLNLEPEKCDGWDW 183

Query: 61  YEWDSLPKPLFGPIKAMVMEGFNPFP 87
           YEWD+LP+PLFGPIK MVM+GFNPFP
Sbjct: 184 YEWDNLPQPLFGPIKKMVMDGFNPFP 209

[Close]

BLAST of Cp4.1LG09g02650 vs. NCBI nr
Match: gi|449434676|ref|XP_004135122.1| (PREDICTED: nudix hydrolase 1-like [Cucumis sativus])

HSP 1 Score: 167.9 bits (424), Expect = 7.6e-39
Identity = 72/86 (83.72%), Postives = 78/86 (90.70%), Query Frame = 1


Query: 1   MKEETGLDIEKVEFLKVTNNLFLDQPTPAHYVVVFVRAVLADPMQTPLNLEPDKCGGWDW 60
           +KEETGLDIEK+EFLKVTNNLF+DQP PAHYVVVFVRAVL DP QTP+NLEP+KC GWDW
Sbjct: 78  IKEETGLDIEKIEFLKVTNNLFMDQPKPAHYVVVFVRAVLTDPTQTPINLEPEKCDGWDW 137

Query: 61  YEWDSLPKPLFGPIKAMVMEGFNPFP 87
           YEWD LP PLFGPIK MV +GFNPFP
Sbjct: 138 YEWDKLPHPLFGPIKKMVTDGFNPFP 163

[Close]

BLAST of Cp4.1LG09g02650 vs. NCBI nr
Match: gi|1009170511|ref|XP_015866239.1| (PREDICTED: nudix hydrolase 1-like [Ziziphus jujuba])

HSP 1 Score: 150.2 bits (378), Expect = 1.6e-33
Identity = 63/86 (73.26%), Postives = 73/86 (84.88%), Query Frame = 1


Query: 1   MKEETGLDIEKVEFLKVTNNLFLDQPTPAHYVVVFVRAVLADPMQTPLNLEPDKCGGWDW 60
           +KEETGLDIEK+EFL VTNNLFLD+  P+HYV +F+RA L DP+Q P NLEP KC GWDW
Sbjct: 59  LKEETGLDIEKIEFLTVTNNLFLDEVKPSHYVAIFLRAYLRDPLQEPENLEPTKCDGWDW 118

Query: 61  YEWDSLPKPLFGPIKAMVMEGFNPFP 87
           YEWD+LPKPLF P++ MV EGFNPFP
Sbjct: 119 YEWDNLPKPLFWPVQKMVKEGFNPFP 144

[Close]

BLAST of Cp4.1LG09g02650 vs. NCBI nr
Match: gi|1009179926|ref|XP_015871350.1| (PREDICTED: nudix hydrolase 1-like, partial [Ziziphus jujuba])

HSP 1 Score: 150.2 bits (378), Expect = 1.6e-33
Identity = 63/86 (73.26%), Postives = 73/86 (84.88%), Query Frame = 1


Query: 1   MKEETGLDIEKVEFLKVTNNLFLDQPTPAHYVVVFVRAVLADPMQTPLNLEPDKCGGWDW 60
           +KEETGLDIEK+EFL VTNNLFLD+  P+HYV +F+RA L DP+Q P NLEP KC GWDW
Sbjct: 54  LKEETGLDIEKIEFLTVTNNLFLDEVKPSHYVAIFLRAYLRDPLQEPENLEPTKCDGWDW 113

Query: 61  YEWDSLPKPLFGPIKAMVMEGFNPFP 87
           YEWD+LPKPLF P++ MV EGFNPFP
Sbjct: 114 YEWDNLPKPLFWPVQKMVKEGFNPFP 139

[Close]

BLAST of Cp4.1LG09g02650 vs. NCBI nr
Match: gi|802680430|ref|XP_012082006.1| (PREDICTED: nudix hydrolase 1 [Jatropha curcas])

HSP 1 Score: 148.3 bits (373), Expect = 6.2e-33
Identity = 60/86 (69.77%), Postives = 74/86 (86.05%), Query Frame = 1


Query: 1   MKEETGLDIEKVEFLKVTNNLFLDQPTPAHYVVVFVRAVLADPMQTPLNLEPDKCGGWDW 60
           MKEETGLDI K+EF+ VTN++FL++P P+HYV +F+RA LADP Q P NLEP+KC GWDW
Sbjct: 139 MKEETGLDIAKIEFVTVTNHVFLEEPKPSHYVTIFLRAFLADPKQEPQNLEPEKCYGWDW 198

Query: 61  YEWDSLPKPLFGPIKAMVMEGFNPFP 87
           Y+WD+LPKPLFGP++ MV  GFNPFP
Sbjct: 199 YDWDNLPKPLFGPLEKMVQSGFNPFP 224

The following BLAST results are available for this feature:

BLAST of Cp4.1LG09g02650 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NUDT1_ARATH	7.1e-29	62.65	Nudix hydrolase 1 OS=Arabidopsis thaliana GN=NUDT1 PE=1 SV=1	[more]

BLAST of Cp4.1LG09g02650 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KR28_CUCSA	5.3e-39	83.72	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G608210 PE=3 SV=1	[more]
A0A067K2T5_JATCU	4.3e-33	69.77	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18264 PE=4 SV=1	[more]
V4TH94_9ROSI	4.3e-33	69.77	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033020mg PE=3 SV=1	[more]
A0A061EB50_THECC	6.9e-31	67.44	Nudix hydrolase 1 OS=Theobroma cacao GN=TCM_011890 PE=4 SV=1	[more]
A0A0A0KV11_CUCSA	5.9e-30	67.44	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G577370 PE=3 SV=1	[more]

BLAST of Cp4.1LG09g02650 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G68760.1	4.0e-30	62.65	nudix hydrolase 1	[more]

BLAST of Cp4.1LG09g02650 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659091409\|ref\|XP_008446534.1\|	2.6e-39	84.88	PREDICTED: nudix hydrolase 1-like [Cucumis melo]	[more]
gi\|449434676\|ref\|XP_004135122.1\|	7.6e-39	83.72	PREDICTED: nudix hydrolase 1-like [Cucumis sativus]	[more]
gi\|1009170511\|ref\|XP_015866239.1\|	1.6e-33	73.26	PREDICTED: nudix hydrolase 1-like [Ziziphus jujuba]	[more]
gi\|1009179926\|ref\|XP_015871350.1\|	1.6e-33	73.26	PREDICTED: nudix hydrolase 1-like, partial [Ziziphus jujuba]	[more]
gi\|802680430\|ref\|XP_012082006.1\|	6.2e-33	69.77	PREDICTED: nudix hydrolase 1 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0016787	hydrolase activity

Vocabulary: **INTERPRO**
Term	Definition
IPR015797	NUDIX_hydrolase-like_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006974	cellular response to DNA damage stimulus
biological_process	GO:0006281	DNA repair
biological_process	GO:0008150	biological_process
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008413	8-oxo-7,8-dihydroguanosine triphosphate pyrophosphatase activity
molecular_function	GO:0019177	dihydroneopterin triphosphate pyrophosphohydrolase activity
molecular_function	GO:0016787	hydrolase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG09g02650.1	Cp4.1LG09g02650.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015797	NUDIX hydrolase domain-like	GENE3D	G3DSA:3.90.79.10		coord: 1..74 score: 7.5
IPR015797	NUDIX hydrolase domain-like	unknown	SSF55811	Nudix	coord: 2..81 score: 8.53
None	No IPR available	PANTHER	PTHR16099	8-OXO-DGTP DIPHOSPHATES NUDT15	coord: 2..86 score: 2.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG09g02650	Cucsa.284040	Cucumber (Gy14) v1	cgycpeB0745
Cp4.1LG09g02650	Cucsa.280810	Cucumber (Gy14) v1	cgycpeB0732
Cp4.1LG09g02650	CmaCh18G010540	Cucurbita maxima (Rimu)	cmacpeB415
Cp4.1LG09g02650	CmoCh18G010760	Cucurbita moschata (Rifu)	cmocpeB376
Cp4.1LG09g02650	CmoCh04G021200	Cucurbita moschata (Rifu)	cmocpeB652
Cp4.1LG09g02650	Cla020353	Watermelon (97103) v1	cpewmB031
Cp4.1LG09g02650	Cla002313	Watermelon (97103) v1	cpewmB044
Cp4.1LG09g02650	Csa5G608210	Cucumber (Chinese Long) v2	cpecuB041
Cp4.1LG09g02650	Csa5G577370	Cucumber (Chinese Long) v2	cpecuB045
Cp4.1LG09g02650	MELO3C012202	Melon (DHL92) v3.5.1	cpemeB024
Cp4.1LG09g02650	ClCG01G005800	Watermelon (Charleston Gray)	cpewcgB033
Cp4.1LG09g02650	ClCG05G023160	Watermelon (Charleston Gray)	cpewcgB045
Cp4.1LG09g02650	CSPI05G20090	Wild cucumber (PI 183967)	cpecpiB041
Cp4.1LG09g02650	CSPI05G24820	Wild cucumber (PI 183967)	cpecpiB036
Cp4.1LG09g02650	Lsi04G003020	Bottle gourd (USVL1VR-Ls)	cpelsiB032
Cp4.1LG09g02650	MELO3C012202.2	Melon (DHL92) v3.6.1	cpemedB028
Cp4.1LG09g02650	MELO3C005349.2	Melon (DHL92) v3.6.1	cpemedB019
Cp4.1LG09g02650	CsaV3_5G033840	Cucumber (Chinese Long) v3	cpecucB0043
Cp4.1LG09g02650	Bhi07G001151	Wax gourd	cpewgoB0058
Cp4.1LG09g02650	CsGy5G024320	Cucumber (Gy14) v2	cgybcpeB581
Cp4.1LG09g02650	Carg21552	Silver-seed gourd	carcpeB1448

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG09g02650	Cp4.1LG01g17740	Cucurbita pepo (Zucchini)	cpecpeB037

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG09g02650	Wild cucumber (PI 183967)	cpecpiB018
Cp4.1LG09g02650	Cucumber (Chinese Long) v2	cpecuB028
Cp4.1LG09g02650	Bottle gourd (USVL1VR-Ls)	cpelsiB024
Cp4.1LG09g02650	Bottle gourd (USVL1VR-Ls)	cpelsiB041
Cp4.1LG09g02650	Watermelon (Charleston Gray)	cpewcgB049
Cp4.1LG09g02650	Watermelon (97103) v1	cpewmB052
Cp4.1LG09g02650	Watermelon (97103) v1	cpewmB059
Cp4.1LG09g02650	Melon (DHL92) v3.5.1	cpemeB034
Cp4.1LG09g02650	Cucumber (Gy14) v2	cgybcpeB587
Cp4.1LG09g02650	Melon (DHL92) v3.6.1	cpemedB039
Cp4.1LG09g02650	Silver-seed gourd	carcpeB0645
Cp4.1LG09g02650	Silver-seed gourd	carcpeB0841
Cp4.1LG09g02650	Silver-seed gourd	carcpeB1169
Cp4.1LG09g02650	Cucumber (Chinese Long) v3	cpecucB0020
Cp4.1LG09g02650	Cucumber (Chinese Long) v3	cpecucB0050
Cp4.1LG09g02650	Cucurbita pepo (Zucchini)	cpecpeB026
Cp4.1LG09g02650	Cucurbita pepo (Zucchini)	cpecpeB040
Cp4.1LG09g02650	Cucurbita pepo (Zucchini)	cpecpeB054
Cp4.1LG09g02650	Cucumber (Gy14) v1	cgycpeB0248
Cp4.1LG09g02650	Cucurbita maxima (Rimu)	cmacpeB072
Cp4.1LG09g02650	Cucurbita maxima (Rimu)	cmacpeB105
Cp4.1LG09g02650	Cucurbita maxima (Rimu)	cmacpeB700
Cp4.1LG09g02650	Cucurbita moschata (Rifu)	cmocpeB046
Cp4.1LG09g02650	Cucurbita moschata (Rifu)	cmocpeB081
Cp4.1LG09g02650	Cucurbita moschata (Rifu)	cmocpeB651