Cp4.1LG09g01750 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG09g01750
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionPentatricopeptide repeat-containing family protein
LocationCp4.1LG09 : 1049168 .. 1050408 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGTGAAAGGGAAAAAGGAAAAATGAATGGAAAATTATAACTGTGGTAAAAAGTAAATTAATTTATTTTATTTATTTGAGGTTTTTCTTAATGAAAGGTAATTTTGTAATTAGGTTAAAATGACAATTATTTATTTATTTAAAAAAGATAAAATAAAATAAAATAAAAACGAGGATCGTAGAATTTCAGATAGAGGATTTTGCTTCTTTCCTAAAGATGAGGTTTTCTCTATCCATTTCCGGAAAGTGGGCGCTTGCCGGCGTCACTTTCTTCTTGCAACAACAATCCTTTATGCATTTTCAAGGTAAATTGTTTCTGTCTCTCTGACCTTGCTTGACGGCGAATTGGATACTGGAAGCACGATTCAGTGCAGTATCCAGCTTCATCCTGTTCTTGCTCTTTGATTTCTGGGTTGAATTTCAACTAATTTCAGTACTCCGGCGGGAATTTTATGCAAGTTGTTTTGAAGTTGAGATAATTTACGTTCCTAGAATTGAGTATTCAAATGGCAATCTCGTGTATTCCAACAAGCCAATTTGCTCTCTCAAAACCCAAGAATGAGTTCATAAATCAACCCCACCCACTTTCTCTTTTCTCCAAATGTTCATCTCTGAGGGAGCTCAAGCAAATTCAAGCTTATACCATCAAAACAAATCTTCACAATGACATCTCTGTTCTCACAAAGCTCATTAATTTCTGCACGCGTAACCCCACCATTTCGTCCATGGACCATGCCCACCACCTGTTCGATAAAATGCTTGACAAGGATATTGTACTGTTTAACATAATGGCTCGTGGTTATGCTCGCTCTAATTCTCCATATCTTGTATTCTCTCTTTTTGCTCAAGTCCTGTGCTCTGGATTGCTTCCTGATGACTACACATTCTCGTCTCTTCTCAAGGCGTGTGCTGGTTCCAAGGCCTTGGAAGAAGGCAGGCAGTTGCATTGCTTTGCTATTAAACTAGGACTTGGTCACAATATTTACATATGCCCAACCCTTATAAATATGTATGCGGCGTGCAATGACATGAATGCAGCACGGGGAGTTTTTGATGGAATGGAGGAGCCATGTATTGTTAGCTATAATGCCATTATTACAGGCTATGCTCGAAGTAGTCAACCCAATGAGGCTTTGTCATTGTTTAGAGAATTGCAAGCTAGCAATCTTGAGCCTACTGATGTTACAATGCTTAGTATAATTATGTCATGTGCTCTGTTGGGAGCACTAGATCTTGGA

mRNA sequence

ATGAAAGTTTTTCTTAATGAAAGGTTTTCTCTATCCATTTCCGGAAAGTGGGCGCTTGCCGGCGTCACTTTCTTCTTGCAACAACAATCCTTTATGCATTTTCAAGAATTGAGTATTCAAATGGCAATCTCGTGTATTCCAACAAGCCAATTTGCTCTCTCAAAACCCAAGAATGAGTTCATAAATCAACCCCACCCACTTTCTCTTTTCTCCAAATGTTCATCTCTGAGGGAGCTCAAGCAAATTCAAGCTTATACCATCAAAACAAATCTTCACAATGACATCTCTGTTCTCACAAAGCTCATTAATTTCTGCACGCGTAACCCCACCATTTCGTCCATGGACCATGCCCACCACCTGTTCGATAAAATGCTTGACAAGGATATTGTACTGTTTAACATAATGGCTCGTGGTTATGCTCGCTCTAATTCTCCATATCTTGTATTCTCTCTTTTTGCTCAAGTCCTGTGCTCTGGATTGCTTCCTGATGACTACACATTCTCGTCTCTTCTCAAGGCGTGTGCTGGTTCCAAGGCCTTGGAAGAAGGCAGGCAGTTGCATTGCTTTGCTATTAAACTAGGACTTGGTCACAATATTTACATATGCCCAACCCTTATAAATATGTATGCGGCGTGCAATGACATGAATGCAGCACGGGGAGTTTTTGATGGAATGGAGGAGCCATGTATTGTTAGCTATAATGCCATTATTACAGGCTATGCTCGAAGTAGTCAACCCAATGAGGCTTTGTCATTGTTTAGAGAATTGCAAGCTAGCAATCTTGAGCCTACTGATGTTACAATGCTTAGTATAATTATGTCATGTGCTCTGTTGGGAGCACTAGATCTTGGA

Coding sequence (CDS)

ATGAAAGTTTTTCTTAATGAAAGGTTTTCTCTATCCATTTCCGGAAAGTGGGCGCTTGCCGGCGTCACTTTCTTCTTGCAACAACAATCCTTTATGCATTTTCAAGAATTGAGTATTCAAATGGCAATCTCGTGTATTCCAACAAGCCAATTTGCTCTCTCAAAACCCAAGAATGAGTTCATAAATCAACCCCACCCACTTTCTCTTTTCTCCAAATGTTCATCTCTGAGGGAGCTCAAGCAAATTCAAGCTTATACCATCAAAACAAATCTTCACAATGACATCTCTGTTCTCACAAAGCTCATTAATTTCTGCACGCGTAACCCCACCATTTCGTCCATGGACCATGCCCACCACCTGTTCGATAAAATGCTTGACAAGGATATTGTACTGTTTAACATAATGGCTCGTGGTTATGCTCGCTCTAATTCTCCATATCTTGTATTCTCTCTTTTTGCTCAAGTCCTGTGCTCTGGATTGCTTCCTGATGACTACACATTCTCGTCTCTTCTCAAGGCGTGTGCTGGTTCCAAGGCCTTGGAAGAAGGCAGGCAGTTGCATTGCTTTGCTATTAAACTAGGACTTGGTCACAATATTTACATATGCCCAACCCTTATAAATATGTATGCGGCGTGCAATGACATGAATGCAGCACGGGGAGTTTTTGATGGAATGGAGGAGCCATGTATTGTTAGCTATAATGCCATTATTACAGGCTATGCTCGAAGTAGTCAACCCAATGAGGCTTTGTCATTGTTTAGAGAATTGCAAGCTAGCAATCTTGAGCCTACTGATGTTACAATGCTTAGTATAATTATGTCATGTGCTCTGTTGGGAGCACTAGATCTTGGA

Protein sequence

MKVFLNERFSLSISGKWALAGVTFFLQQQSFMHFQELSIQMAISCIPTSQFALSKPKNEFINQPHPLSLFSKCSSLRELKQIQAYTIKTNLHNDISVLTKLINFCTRNPTISSMDHAHHLFDKMLDKDIVLFNIMARGYARSNSPYLVFSLFAQVLCSGLLPDDYTFSSLLKACAGSKALEEGRQLHCFAIKLGLGHNIYICPTLINMYAACNDMNAARGVFDGMEEPCIVSYNAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLSIIMSCALLGALDLG
Homology
[Close]
BLAST of Cp4.1LG09g01750 vs. Swiss-Prot
Match: PP145_ARATH (Pentatricopeptide repeat-containing protein At2g02980, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H26 PE=2 SV=2)

HSP 1 Score: 295.0 bits (754), Expect = 8.5e-79
Identity = 144/248 (58.06%), Postives = 189/248 (76.21%), Query Frame = 1 

Query: 37  LSIQMAISCIPTSQFALSKPKNEFINQPHPLSLFSKCSSLRELKQIQAYTIKTNLHNDIS 96
           +S    IS    ++      K + +N  +P+ L SKC+SLREL QIQAY IK+++  D+S
Sbjct: 3   ISSASLISSFSHAETFTKHSKIDTVNTQNPILLISKCNSLRELMQIQAYAIKSHI-EDVS 62

Query: 97  VLTKLINFCTRNPTISSMDHAHHLFDKMLDKDIVLFNIMARGYARSNSPYLVFSLFAQVL 156
            + KLINFCT +PT SSM +A HLF+ M + DIV+FN MARGY+R  +P  VFSLF ++L
Sbjct: 63  FVAKLINFCTESPTESSMSYARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEIL 122

Query: 157 CSGLLPDDYTFSSLLKACAGSKALEEGRQLHCFAIKLGLGHNIYICPTLINMYAACNDMN 216
             G+LPD+YTF SLLKACA +KALEEGRQLHC ++KLGL  N+Y+CPTLINMY  C D++
Sbjct: 123 EDGILPDNYTFPSLLKACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVD 182

Query: 217 AARGVFDGMEEPCIVSYNAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLSIIMSCA 276
           +AR VFD + EPC+V YNA+ITGYAR ++PNEALSLFRE+Q   L+P ++T+LS++ SCA
Sbjct: 183 SARCVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCA 242

Query: 277 LLGALDLG 285
           LLG+LDLG
Sbjct: 243 LLGSLDLG 249

[Close]
BLAST of Cp4.1LG09g01750 vs. Swiss-Prot
Match: PPR21_ARATH (Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 8.3e-34
Identity = 88/285 (30.88%), Postives = 142/285 (49.82%), Query Frame = 1 

Query: 41  MAISC----IPTSQFAL------SKPKNEFINQPHPLSLFSKCSSLRELKQIQAYTIKTN 100
           M +SC    +P+S +        S P  + I     LSL   C +L+ L+ I A  IK  
Sbjct: 1   MMLSCSPLTVPSSSYPFHFLPSSSDPPYDSIRNHPSLSLLHNCKTLQSLRIIHAQMIKIG 60

Query: 101 LHNDISVLTKLINFCTRNPTISSMDHAHHLFDKMLDKDIVLFNIMARGYARSNSPYLVFS 160
           LHN    L+KLI FC  +P    + +A  +F  + + +++++N M RG+A S+ P     
Sbjct: 61  LHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQEPNLLIWNTMFRGHALSSDPVSALK 120

Query: 161 LFAQVLCSGLLPDDYTFSSLLKACAGSKALEEGRQLHCFAIKLGLGHNIYICPTLINMYA 220
           L+  ++  GLLP+ YTF  +LK+CA SKA +EG+Q+H   +KLG   ++Y+  +LI+MY 
Sbjct: 121 LYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYV 180

Query: 221 ACNDMNAARGVFDGMEEPCIVSYNAIITGYARSSQPNEALSLF----------------- 280
               +  A  VFD      +VSY A+I GYA       A  LF                 
Sbjct: 181 QNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISG 240

Query: 281 --------------RELQASNLEPTDVTMLSIIMSCALLGALDLG 285
                         +++  +N+ P + TM++++ +CA  G+++LG
Sbjct: 241 YAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELG 285

[Close]
BLAST of Cp4.1LG09g01750 vs. Swiss-Prot
Match: PP449_ARATH (Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 2.4e-33
Identity = 84/249 (33.73%), Postives = 130/249 (52.21%), Query Frame = 1 

Query: 67  LSLFSKCSSLRELKQIQAYTIKTNLHNDISVLTKLINFCTRNPTISSMDHAHHLFDKMLD 126
           +S   +CS   ELKQI A  +KT L  D   +TK ++FC  + +   + +A  +FD    
Sbjct: 18  MSCLQRCSKQEELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDR 77

Query: 127 KDIVLFNIMARGYARSNSPYLVFSLFAQVLCSGLLPDDYTFSSLLKACAGSKALEEGRQL 186
            D  L+N+M RG++ S+ P     L+ ++LCS    + YTF SLLKAC+   A EE  Q+
Sbjct: 78  PDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQI 137

Query: 187 HCFAIKLGLGHNIYICPTLINMYAACNDMNAARGVFDGMEEPCIVSYNAIITGYARSSQP 246
           H    KLG  +++Y   +LIN YA   +   A  +FD + EP  VS+N++I GY ++ + 
Sbjct: 138 HAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKM 197

Query: 247 N-------------------------------EALSLFRELQASNLEPTDVTMLSIIMSC 285
           +                               EAL LF E+Q S++EP +V++ + + +C
Sbjct: 198 DIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSAC 257

[Close]
BLAST of Cp4.1LG09g01750 vs. Swiss-Prot
Match: PP182_ARATH (Pentatricopeptide repeat-containing protein At2g33760 OS=Arabidopsis thaliana GN=PCMP-H6 PE=3 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 2.5e-30
Identity = 69/209 (33.01%), Postives = 120/209 (57.42%), Query Frame = 1 

Query: 76  LRELKQIQAYTIKTNLHNDISVLTKLINFCTRNPTISSMDHAHHLFDKMLDKDIVLFNIM 135
           +++L+Q+ A+ I T      S+LTKLI        I+   + H LF  +   D  LFN +
Sbjct: 22  VKQLQQVHAHLIVTGYGRSRSLLTKLITLACSARAIA---YTHLLFLSVPLPDDFLFNSV 81

Query: 136 ARGYARSNSPYLVFSLFAQVLCSGLLPDDYTFSSLLKACAGSKALEEGRQLHCFAIKLGL 195
            +  ++   P    + + ++L S + P +YTF+S++K+CA   AL  G+ +HC A+  G 
Sbjct: 82  IKSTSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALRIGKGVHCHAVVSGF 141

Query: 196 GHNIYICPTLINMYAACNDMNAARGVFDGMEEPCIVSYNAIITGYARSSQPNEALSLFRE 255
           G + Y+   L+  Y+ C DM  AR VFD M E  IV++N++++G+ ++   +EA+ +F +
Sbjct: 142 GLDTYVQAALVTFYSKCGDMEGARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQ 201

Query: 256 LQASNLEPTDVTMLSIIMSCALLGALDLG 285
           ++ S  EP   T +S++ +CA  GA+ LG
Sbjct: 202 MRESGFEPDSATFVSLLSACAQTGAVSLG 227

[Close]
BLAST of Cp4.1LG09g01750 vs. Swiss-Prot
Match: PP330_ARATH (Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2)

HSP 1 Score: 134.0 bits (336), Expect = 2.5e-30
Identity = 75/215 (34.88%), Postives = 130/215 (60.47%), Query Frame = 1 

Query: 74  SSLRELKQIQAYTIKTNLH-NDISVLTKLINFCTRNPTISSMDHAHHLFDKMLDKDIVLF 133
           SS+ +L+QI A++I+  +  +D  +   LI +    P+   M +AH +F K ++K I +F
Sbjct: 28  SSITKLRQIHAFSIRHGVSISDAELGKHLIFYLVSLPSPPPMSYAHKVFSK-IEKPINVF 87

Query: 134 --NIMARGYARSNSPYLVFSLFAQVLCSGLL-PDDYTFSSLLKACAGSKALEEGRQLHCF 193
             N + RGYA   +    FSL+ ++  SGL+ PD +T+  L+KA      +  G  +H  
Sbjct: 88  IWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSV 147

Query: 194 AIKLGLGHNIYICPTLINMYAACNDMNAARGVFDGMEEPCIVSYNAIITGYARSSQPNEA 253
            I+ G G  IY+  +L+++YA C D+ +A  VFD M E  +V++N++I G+A + +P EA
Sbjct: 148 VIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEA 207

Query: 254 LSLFRELQASNLEPTDVTMLSIIMSCALLGALDLG 285
           L+L+ E+ +  ++P   T++S++ +CA +GAL LG
Sbjct: 208 LALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLG 241

[Close]
BLAST of Cp4.1LG09g01750 vs. TrEMBL
Match: A0A0A0KU15_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G605160 PE=4 SV=1)

HSP 1 Score: 426.0 bits (1094), Expect = 3.6e-116
Identity = 214/250 (85.60%), Postives = 226/250 (90.40%), Query Frame = 1 

Query: 41  MAISCIPTSQFALSKP-----KNEF-INQPHPLSLFSKCSSLRELKQIQAYTIKTNLHND 100
           MAISCIPT QF L+KP     KNEF INQ HPLSL SKC+SL ELKQIQAYTIKTNL +D
Sbjct: 1   MAISCIPTCQFTLTKPSSAFSKNEFVINQLHPLSLLSKCTSLNELKQIQAYTIKTNLQSD 60

Query: 101 ISVLTKLINFCTRNPTISSMDHAHHLFDKMLDKDIVLFNIMARGYARSNSPYLVFSLFAQ 160
           ISVLTKLINFCT NPT S MDHAHHLFD++LDKDI+LFNIMARGYARSNSPYL FSLF +
Sbjct: 61  ISVLTKLINFCTLNPTTSYMDHAHHLFDQILDKDIILFNIMARGYARSNSPYLAFSLFGE 120

Query: 161 VLCSGLLPDDYTFSSLLKACAGSKALEEGRQLHCFAIKLGLGHNIYICPTLINMYAACND 220
           +LCSGLLPDDYTFSSLLKACA SKAL EG  LHCFA+KLGL HNIYICPTLINMYA CND
Sbjct: 121 LLCSGLLPDDYTFSSLLKACASSKALREGMGLHCFAVKLGLNHNIYICPTLINMYAECND 180

Query: 221 MNAARGVFDGMEEPCIVSYNAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLSIIMS 280
           MNAARGVFD ME+PCIVSYNAIITGYARSSQPNEALSLFRELQASN+EPTDVTMLS+IMS
Sbjct: 181 MNAARGVFDEMEQPCIVSYNAIITGYARSSQPNEALSLFRELQASNIEPTDVTMLSVIMS 240

Query: 281 CALLGALDLG 285
           CALLGALDLG
Sbjct: 241 CALLGALDLG 250

[Close]
BLAST of Cp4.1LG09g01750 vs. TrEMBL
Match: D7TN78_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0026g02510 PE=4 SV=1)

HSP 1 Score: 344.7 bits (883), Expect = 1.0e-91
Identity = 165/229 (72.05%), Postives = 192/229 (83.84%), Query Frame = 1 

Query: 56  PKNEFINQPHPLSLFSKCSSLRELKQIQAYTIKTNLHNDISVLTKLINFCTRNPTISSMD 115
           P N   N  HPLSL  KC+SLRELKQ+QA+ IKT+LH+D+SVLTK INFC+ NPT +SM 
Sbjct: 13  PPNSNSNTTHPLSLLPKCTSLRELKQLQAFAIKTHLHSDLSVLTKFINFCSLNPTTTSMQ 72

Query: 116 HAHHLFDKMLDKDIVLFNIMARGYARSNSPYLVFSLFAQVLCSGLLPDDYTFSSLLKACA 175
           HAHHLFD++   DIVLFN MARGYAR+++P   F+LF Q+L SGL PDDYTF SLLKACA
Sbjct: 73  HAHHLFDQIPQPDIVLFNTMARGYARTDTPLRAFTLFTQILFSGLFPDDYTFPSLLKACA 132

Query: 176 GSKALEEGRQLHCFAIKLGLGHNIYICPTLINMYAACNDMNAARGVFDGMEEPCIVSYNA 235
             KALEEGRQLHC AIKLGL  N+Y+CPTLINMY ACN+M+ AR VFD + EPC+V+YNA
Sbjct: 133 SCKALEEGRQLHCLAIKLGLSENVYVCPTLINMYTACNEMDCARRVFDKIWEPCVVTYNA 192

Query: 236 IITGYARSSQPNEALSLFRELQASNLEPTDVTMLSIIMSCALLGALDLG 285
           +ITGYAR S+PNEALSLFRELQA NL+PTDVTMLS++ SCALLGALDLG
Sbjct: 193 MITGYARGSRPNEALSLFRELQARNLKPTDVTMLSVLSSCALLGALDLG 241

[Close]
BLAST of Cp4.1LG09g01750 vs. TrEMBL
Match: M5XQC4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016366mg PE=4 SV=1)

HSP 1 Score: 331.3 bits (848), Expect = 1.2e-87
Identity = 170/244 (69.67%), Postives = 198/244 (81.15%), Query Frame = 1 

Query: 41  MAISCIPTSQFALSKPKNEFINQPHPLSLFSKCSSLRELKQIQAYTIKTNLHNDISVLTK 100
           MA   +  S F  S PK    N   P+SL  KC+SLRELKQIQA++IKT+L  DISVLTK
Sbjct: 1   MAAPAVQMSPF--SHPKT---NTNTPVSLIPKCTSLRELKQIQAFSIKTHLQYDISVLTK 60

Query: 101 LINFCTRNPTISSMDHAHHLFDKMLDKDIVLFNIMARGYARSNSPYLVFSLFAQVLCSGL 160
           LINFCT NPT +SMD+AHHLFD++   DIV+FN MARGYARS++P+   SLFA +L S L
Sbjct: 61  LINFCTLNPTGTSMDYAHHLFDQIPHPDIVVFNTMARGYARSHAPFRAISLFAHILSSDL 120

Query: 161 LPDDYTFSSLLKACAGSKALEEGRQLHCFAIKLGLGHNIYICPTLINMYAACNDMNAARG 220
            PDDYTF+SLLKACA SKALEEGRQLHCFAIK GL  NIY+CPTLINMY  CND++AAR 
Sbjct: 121 FPDDYTFASLLKACASSKALEEGRQLHCFAIKCGLHLNIYVCPTLINMYTECNDVDAARR 180

Query: 221 VFDGMEEPCIVSYNAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLSIIMSCALLGA 280
           VFD + +PC+V +NA+I GYARSS+PNEAL+LFRELQASNL+PTDVTMLS + SCALLGA
Sbjct: 181 VFDKIPDPCVVVHNAMIKGYARSSRPNEALALFRELQASNLKPTDVTMLSALSSCALLGA 239

Query: 281 LDLG 285
           LDLG
Sbjct: 241 LDLG 239

[Close]
BLAST of Cp4.1LG09g01750 vs. TrEMBL
Match: A0A0L9USR2_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan06g106700 PE=4 SV=1)

HSP 1 Score: 324.3 bits (830), Expect = 1.5e-85
Identity = 166/246 (67.48%), Postives = 192/246 (78.05%), Query Frame = 1 

Query: 41  MAISCIPTSQFALSKPKNEFINQPHP--LSLFSKCSSLRELKQIQAYTIKTNLHNDISVL 100
           MA+S +     +  +   E   QP P  LSL  KC+SLRELKQIQAYTIKT+LHN  +VL
Sbjct: 1   MAMSILQCISHSPIEVNIEVALQPSPSILSLIPKCTSLRELKQIQAYTIKTHLHNTHTVL 60

Query: 101 TKLINFCTRNPTISSMDHAHHLFDKMLDKDIVLFNIMARGYARSNSPYLVFSLFAQVLCS 160
           TKLINFCT NPT +SMDHAH +FD++   DI+LFN MARGYAR + P     LF QVL S
Sbjct: 61  TKLINFCTSNPTTASMDHAHQIFDQIPHPDIILFNTMARGYARFDDPLRAILLFCQVLFS 120

Query: 161 GLLPDDYTFSSLLKACAGSKALEEGRQLHCFAIKLGLGHNIYICPTLINMYAACNDMNAA 220
           GLLPDDYTFSSL KACA  KAL+EG+QLHC A KLG+  N+Y+CPTLINMY ACNDM+AA
Sbjct: 121 GLLPDDYTFSSLFKACARLKALQEGKQLHCLAFKLGVSGNMYVCPTLINMYTACNDMDAA 180

Query: 221 RGVFDGMEEPCIVSYNAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLSIIMSCALL 280
           R VFD ++EPC+V+YNAIIT  ARSSQPNEAL+LFRELQ S L+PTDVTML  + SCALL
Sbjct: 181 RRVFDKIDEPCVVAYNAIITSCARSSQPNEALALFRELQESGLKPTDVTMLVALSSCALL 240

Query: 281 GALDLG 285
           GALDLG
Sbjct: 241 GALDLG 246

[Close]
BLAST of Cp4.1LG09g01750 vs. TrEMBL
Match: A0A061EHY5_THECC (Pentatricopeptide repeat (PPR) superfamily protein OS=Theobroma cacao GN=TCM_011701 PE=4 SV=1)

HSP 1 Score: 323.9 bits (829), Expect = 1.9e-85
Identity = 160/250 (64.00%), Postives = 197/250 (78.80%), Query Frame = 1 

Query: 41  MAISCIPTSQFALSKPKNEF-----INQP-HPLSLFSKCSSLRELKQIQAYTIKTNLHND 100
           MA +  P +    SKP  +      IN P +PLSL  KC+SLRE+KQIQA+ IKT+L ND
Sbjct: 1   MAAAPTPITSIPPSKPNGKISTIEPINPPQNPLSLLPKCASLREVKQIQAFAIKTHLQND 60

Query: 101 ISVLTKLINFCTRNPTISSMDHAHHLFDKMLDKDIVLFNIMARGYARSNSPYLVFSLFAQ 160
           I+ LTKLINFCT+NPT +SM++AH +FDK+   DIVLFN MARGY+RSN+P     L +Q
Sbjct: 61  ITFLTKLINFCTKNPTFTSMEYAHKVFDKVSQPDIVLFNTMARGYSRSNTPTQAIPLVSQ 120

Query: 161 VLCSGLLPDDYTFSSLLKACAGSKALEEGRQLHCFAIKLGLGHNIYICPTLINMYAACND 220
           +L  G LPDDYTF S+LKAC+ SKALEEG+Q+HC  IKLGL HNIYICP+LI+MY  CND
Sbjct: 121 LLSFGFLPDDYTFPSVLKACSSSKALEEGKQIHCLVIKLGLNHNIYICPSLISMYTECND 180

Query: 221 MNAARGVFDGMEEPCIVSYNAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLSIIMS 280
           +++AR VFD M +PC++SYNAIITGYA+ S+PNEALSLFRELQ  +L+PTDVTMLS++  
Sbjct: 181 LDSARRVFDKMLDPCVISYNAIITGYAKCSRPNEALSLFRELQVKSLKPTDVTMLSVLSC 240

Query: 281 CALLGALDLG 285
           CALLGALDLG
Sbjct: 241 CALLGALDLG 250

[Close]
BLAST of Cp4.1LG09g01750 vs. TAIR10
Match: AT2G02980.1 (AT2G02980.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 295.0 bits (754), Expect = 4.8e-80
Identity = 144/248 (58.06%), Postives = 189/248 (76.21%), Query Frame = 1 

Query: 37  LSIQMAISCIPTSQFALSKPKNEFINQPHPLSLFSKCSSLRELKQIQAYTIKTNLHNDIS 96
           +S    IS    ++      K + +N  +P+ L SKC+SLREL QIQAY IK+++  D+S
Sbjct: 3   ISSASLISSFSHAETFTKHSKIDTVNTQNPILLISKCNSLRELMQIQAYAIKSHI-EDVS 62

Query: 97  VLTKLINFCTRNPTISSMDHAHHLFDKMLDKDIVLFNIMARGYARSNSPYLVFSLFAQVL 156
            + KLINFCT +PT SSM +A HLF+ M + DIV+FN MARGY+R  +P  VFSLF ++L
Sbjct: 63  FVAKLINFCTESPTESSMSYARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEIL 122

Query: 157 CSGLLPDDYTFSSLLKACAGSKALEEGRQLHCFAIKLGLGHNIYICPTLINMYAACNDMN 216
             G+LPD+YTF SLLKACA +KALEEGRQLHC ++KLGL  N+Y+CPTLINMY  C D++
Sbjct: 123 EDGILPDNYTFPSLLKACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVD 182

Query: 217 AARGVFDGMEEPCIVSYNAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLSIIMSCA 276
           +AR VFD + EPC+V YNA+ITGYAR ++PNEALSLFRE+Q   L+P ++T+LS++ SCA
Sbjct: 183 SARCVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCA 242

Query: 277 LLGALDLG 285
           LLG+LDLG
Sbjct: 243 LLGSLDLG 249

[Close]
BLAST of Cp4.1LG09g01750 vs. TAIR10
Match: AT1G08070.1 (AT1G08070.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 145.6 bits (366), Expect = 4.7e-35
Identity = 88/285 (30.88%), Postives = 142/285 (49.82%), Query Frame = 1 

Query: 41  MAISC----IPTSQFAL------SKPKNEFINQPHPLSLFSKCSSLRELKQIQAYTIKTN 100
           M +SC    +P+S +        S P  + I     LSL   C +L+ L+ I A  IK  
Sbjct: 1   MMLSCSPLTVPSSSYPFHFLPSSSDPPYDSIRNHPSLSLLHNCKTLQSLRIIHAQMIKIG 60

Query: 101 LHNDISVLTKLINFCTRNPTISSMDHAHHLFDKMLDKDIVLFNIMARGYARSNSPYLVFS 160
           LHN    L+KLI FC  +P    + +A  +F  + + +++++N M RG+A S+ P     
Sbjct: 61  LHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQEPNLLIWNTMFRGHALSSDPVSALK 120

Query: 161 LFAQVLCSGLLPDDYTFSSLLKACAGSKALEEGRQLHCFAIKLGLGHNIYICPTLINMYA 220
           L+  ++  GLLP+ YTF  +LK+CA SKA +EG+Q+H   +KLG   ++Y+  +LI+MY 
Sbjct: 121 LYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYV 180

Query: 221 ACNDMNAARGVFDGMEEPCIVSYNAIITGYARSSQPNEALSLF----------------- 280
               +  A  VFD      +VSY A+I GYA       A  LF                 
Sbjct: 181 QNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISG 240

Query: 281 --------------RELQASNLEPTDVTMLSIIMSCALLGALDLG 285
                         +++  +N+ P + TM++++ +CA  G+++LG
Sbjct: 241 YAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELG 285

[Close]
BLAST of Cp4.1LG09g01750 vs. TAIR10
Match: AT5G66520.1 (AT5G66520.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 144.1 bits (362), Expect = 1.4e-34
Identity = 84/249 (33.73%), Postives = 130/249 (52.21%), Query Frame = 1 

Query: 67  LSLFSKCSSLRELKQIQAYTIKTNLHNDISVLTKLINFCTRNPTISSMDHAHHLFDKMLD 126
           +S   +CS   ELKQI A  +KT L  D   +TK ++FC  + +   + +A  +FD    
Sbjct: 18  MSCLQRCSKQEELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDR 77

Query: 127 KDIVLFNIMARGYARSNSPYLVFSLFAQVLCSGLLPDDYTFSSLLKACAGSKALEEGRQL 186
            D  L+N+M RG++ S+ P     L+ ++LCS    + YTF SLLKAC+   A EE  Q+
Sbjct: 78  PDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQI 137

Query: 187 HCFAIKLGLGHNIYICPTLINMYAACNDMNAARGVFDGMEEPCIVSYNAIITGYARSSQP 246
           H    KLG  +++Y   +LIN YA   +   A  +FD + EP  VS+N++I GY ++ + 
Sbjct: 138 HAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKM 197

Query: 247 N-------------------------------EALSLFRELQASNLEPTDVTMLSIIMSC 285
           +                               EAL LF E+Q S++EP +V++ + + +C
Sbjct: 198 DIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSAC 257

[Close]
BLAST of Cp4.1LG09g01750 vs. TAIR10
Match: AT2G33760.1 (AT2G33760.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 134.0 bits (336), Expect = 1.4e-31
Identity = 69/209 (33.01%), Postives = 120/209 (57.42%), Query Frame = 1 

Query: 76  LRELKQIQAYTIKTNLHNDISVLTKLINFCTRNPTISSMDHAHHLFDKMLDKDIVLFNIM 135
           +++L+Q+ A+ I T      S+LTKLI        I+   + H LF  +   D  LFN +
Sbjct: 22  VKQLQQVHAHLIVTGYGRSRSLLTKLITLACSARAIA---YTHLLFLSVPLPDDFLFNSV 81

Query: 136 ARGYARSNSPYLVFSLFAQVLCSGLLPDDYTFSSLLKACAGSKALEEGRQLHCFAIKLGL 195
            +  ++   P    + + ++L S + P +YTF+S++K+CA   AL  G+ +HC A+  G 
Sbjct: 82  IKSTSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALRIGKGVHCHAVVSGF 141

Query: 196 GHNIYICPTLINMYAACNDMNAARGVFDGMEEPCIVSYNAIITGYARSSQPNEALSLFRE 255
           G + Y+   L+  Y+ C DM  AR VFD M E  IV++N++++G+ ++   +EA+ +F +
Sbjct: 142 GLDTYVQAALVTFYSKCGDMEGARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQ 201

Query: 256 LQASNLEPTDVTMLSIIMSCALLGALDLG 285
           ++ S  EP   T +S++ +CA  GA+ LG
Sbjct: 202 MRESGFEPDSATFVSLLSACAQTGAVSLG 227

[Close]
BLAST of Cp4.1LG09g01750 vs. TAIR10
Match: AT4G21065.1 (AT4G21065.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 134.0 bits (336), Expect = 1.4e-31
Identity = 75/215 (34.88%), Postives = 130/215 (60.47%), Query Frame = 1 

Query: 74  SSLRELKQIQAYTIKTNLH-NDISVLTKLINFCTRNPTISSMDHAHHLFDKMLDKDIVLF 133
           SS+ +L+QI A++I+  +  +D  +   LI +    P+   M +AH +F K ++K I +F
Sbjct: 28  SSITKLRQIHAFSIRHGVSISDAELGKHLIFYLVSLPSPPPMSYAHKVFSK-IEKPINVF 87

Query: 134 --NIMARGYARSNSPYLVFSLFAQVLCSGLL-PDDYTFSSLLKACAGSKALEEGRQLHCF 193
             N + RGYA   +    FSL+ ++  SGL+ PD +T+  L+KA      +  G  +H  
Sbjct: 88  IWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSV 147

Query: 194 AIKLGLGHNIYICPTLINMYAACNDMNAARGVFDGMEEPCIVSYNAIITGYARSSQPNEA 253
            I+ G G  IY+  +L+++YA C D+ +A  VFD M E  +V++N++I G+A + +P EA
Sbjct: 148 VIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEA 207

Query: 254 LSLFRELQASNLEPTDVTMLSIIMSCALLGALDLG 285
           L+L+ E+ +  ++P   T++S++ +CA +GAL LG
Sbjct: 208 LALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLG 241

[Close]
BLAST of Cp4.1LG09g01750 vs. NCBI nr
Match: gi|659091079|ref|XP_008446357.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g02980 [Cucumis melo])

HSP 1 Score: 426.4 bits (1095), Expect = 3.9e-116
Identity = 214/250 (85.60%), Postives = 228/250 (91.20%), Query Frame = 1 

Query: 41  MAISCIPTSQFALSKP-----KNEF-INQPHPLSLFSKCSSLRELKQIQAYTIKTNLHND 100
           MAISCIPT QF L+KP     KNEF INQ HPLSL SKC+SL+ELKQIQAYTIKTNL +D
Sbjct: 1   MAISCIPTCQFTLTKPSSTFSKNEFVINQLHPLSLLSKCTSLKELKQIQAYTIKTNLQSD 60

Query: 101 ISVLTKLINFCTRNPTISSMDHAHHLFDKMLDKDIVLFNIMARGYARSNSPYLVFSLFAQ 160
           ISVLTKLINFCT NPT S MDHAHHLFD++LDKDI+LFNIMARGYARSNSPYL FSLFAQ
Sbjct: 61  ISVLTKLINFCTLNPTTSYMDHAHHLFDQILDKDIILFNIMARGYARSNSPYLAFSLFAQ 120

Query: 161 VLCSGLLPDDYTFSSLLKACAGSKALEEGRQLHCFAIKLGLGHNIYICPTLINMYAACND 220
           +LCSGLLPDDYTFSSLLKACA SKAL +G  LHCFA+KLGL HNIYICPTLINMYA CND
Sbjct: 121 LLCSGLLPDDYTFSSLLKACASSKALRQGMGLHCFAVKLGLNHNIYICPTLINMYAECND 180

Query: 221 MNAARGVFDGMEEPCIVSYNAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLSIIMS 280
           MNAARGVFD ME+PCIVSYNAIITGYARSSQPNEALSLFRELQAS++EPTDVTMLS+IMS
Sbjct: 181 MNAARGVFDEMEQPCIVSYNAIITGYARSSQPNEALSLFRELQASDIEPTDVTMLSVIMS 240

Query: 281 CALLGALDLG 285
           CALLGALDLG
Sbjct: 241 CALLGALDLG 250

[Close]
BLAST of Cp4.1LG09g01750 vs. NCBI nr
Match: gi|700196745|gb|KGN51922.1| (hypothetical protein Csa_5G605160 [Cucumis sativus])

HSP 1 Score: 426.0 bits (1094), Expect = 5.1e-116
Identity = 214/250 (85.60%), Postives = 226/250 (90.40%), Query Frame = 1 

Query: 41  MAISCIPTSQFALSKP-----KNEF-INQPHPLSLFSKCSSLRELKQIQAYTIKTNLHND 100
           MAISCIPT QF L+KP     KNEF INQ HPLSL SKC+SL ELKQIQAYTIKTNL +D
Sbjct: 1   MAISCIPTCQFTLTKPSSAFSKNEFVINQLHPLSLLSKCTSLNELKQIQAYTIKTNLQSD 60

Query: 101 ISVLTKLINFCTRNPTISSMDHAHHLFDKMLDKDIVLFNIMARGYARSNSPYLVFSLFAQ 160
           ISVLTKLINFCT NPT S MDHAHHLFD++LDKDI+LFNIMARGYARSNSPYL FSLF +
Sbjct: 61  ISVLTKLINFCTLNPTTSYMDHAHHLFDQILDKDIILFNIMARGYARSNSPYLAFSLFGE 120

Query: 161 VLCSGLLPDDYTFSSLLKACAGSKALEEGRQLHCFAIKLGLGHNIYICPTLINMYAACND 220
           +LCSGLLPDDYTFSSLLKACA SKAL EG  LHCFA+KLGL HNIYICPTLINMYA CND
Sbjct: 121 LLCSGLLPDDYTFSSLLKACASSKALREGMGLHCFAVKLGLNHNIYICPTLINMYAECND 180

Query: 221 MNAARGVFDGMEEPCIVSYNAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLSIIMS 280
           MNAARGVFD ME+PCIVSYNAIITGYARSSQPNEALSLFRELQASN+EPTDVTMLS+IMS
Sbjct: 181 MNAARGVFDEMEQPCIVSYNAIITGYARSSQPNEALSLFRELQASNIEPTDVTMLSVIMS 240

Query: 281 CALLGALDLG 285
           CALLGALDLG
Sbjct: 241 CALLGALDLG 250

[Close]
BLAST of Cp4.1LG09g01750 vs. NCBI nr
Match: gi|225425668|ref|XP_002269694.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g02980 [Vitis vinifera])

HSP 1 Score: 344.7 bits (883), Expect = 1.5e-91
Identity = 165/229 (72.05%), Postives = 192/229 (83.84%), Query Frame = 1 

Query: 56  PKNEFINQPHPLSLFSKCSSLRELKQIQAYTIKTNLHNDISVLTKLINFCTRNPTISSMD 115
           P N   N  HPLSL  KC+SLRELKQ+QA+ IKT+LH+D+SVLTK INFC+ NPT +SM 
Sbjct: 13  PPNSNSNTTHPLSLLPKCTSLRELKQLQAFAIKTHLHSDLSVLTKFINFCSLNPTTTSMQ 72

Query: 116 HAHHLFDKMLDKDIVLFNIMARGYARSNSPYLVFSLFAQVLCSGLLPDDYTFSSLLKACA 175
           HAHHLFD++   DIVLFN MARGYAR+++P   F+LF Q+L SGL PDDYTF SLLKACA
Sbjct: 73  HAHHLFDQIPQPDIVLFNTMARGYARTDTPLRAFTLFTQILFSGLFPDDYTFPSLLKACA 132

Query: 176 GSKALEEGRQLHCFAIKLGLGHNIYICPTLINMYAACNDMNAARGVFDGMEEPCIVSYNA 235
             KALEEGRQLHC AIKLGL  N+Y+CPTLINMY ACN+M+ AR VFD + EPC+V+YNA
Sbjct: 133 SCKALEEGRQLHCLAIKLGLSENVYVCPTLINMYTACNEMDCARRVFDKIWEPCVVTYNA 192

Query: 236 IITGYARSSQPNEALSLFRELQASNLEPTDVTMLSIIMSCALLGALDLG 285
           +ITGYAR S+PNEALSLFRELQA NL+PTDVTMLS++ SCALLGALDLG
Sbjct: 193 MITGYARGSRPNEALSLFRELQARNLKPTDVTMLSVLSSCALLGALDLG 241

[Close]
BLAST of Cp4.1LG09g01750 vs. NCBI nr
Match: gi|596294817|ref|XP_007226900.1| (hypothetical protein PRUPE_ppa016366mg [Prunus persica])

HSP 1 Score: 331.3 bits (848), Expect = 1.7e-87
Identity = 170/244 (69.67%), Postives = 198/244 (81.15%), Query Frame = 1 

Query: 41  MAISCIPTSQFALSKPKNEFINQPHPLSLFSKCSSLRELKQIQAYTIKTNLHNDISVLTK 100
           MA   +  S F  S PK    N   P+SL  KC+SLRELKQIQA++IKT+L  DISVLTK
Sbjct: 1   MAAPAVQMSPF--SHPKT---NTNTPVSLIPKCTSLRELKQIQAFSIKTHLQYDISVLTK 60

Query: 101 LINFCTRNPTISSMDHAHHLFDKMLDKDIVLFNIMARGYARSNSPYLVFSLFAQVLCSGL 160
           LINFCT NPT +SMD+AHHLFD++   DIV+FN MARGYARS++P+   SLFA +L S L
Sbjct: 61  LINFCTLNPTGTSMDYAHHLFDQIPHPDIVVFNTMARGYARSHAPFRAISLFAHILSSDL 120

Query: 161 LPDDYTFSSLLKACAGSKALEEGRQLHCFAIKLGLGHNIYICPTLINMYAACNDMNAARG 220
            PDDYTF+SLLKACA SKALEEGRQLHCFAIK GL  NIY+CPTLINMY  CND++AAR 
Sbjct: 121 FPDDYTFASLLKACASSKALEEGRQLHCFAIKCGLHLNIYVCPTLINMYTECNDVDAARR 180

Query: 221 VFDGMEEPCIVSYNAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLSIIMSCALLGA 280
           VFD + +PC+V +NA+I GYARSS+PNEAL+LFRELQASNL+PTDVTMLS + SCALLGA
Sbjct: 181 VFDKIPDPCVVVHNAMIKGYARSSRPNEALALFRELQASNLKPTDVTMLSALSSCALLGA 239

Query: 281 LDLG 285
           LDLG
Sbjct: 241 LDLG 239

[Close]
BLAST of Cp4.1LG09g01750 vs. NCBI nr
Match: gi|657994316|ref|XP_008389463.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g02980 [Malus domestica])

HSP 1 Score: 330.5 bits (846), Expect = 2.9e-87
Identity = 166/244 (68.03%), Postives = 197/244 (80.74%), Query Frame = 1 

Query: 41  MAISCIPTSQFALSKPKNEFINQPHPLSLFSKCSSLRELKQIQAYTIKTNLHNDISVLTK 100
           MA   +  S F  S PK    N   PLSL  KCS+LRE+KQI A++IKT+L  DISVLTK
Sbjct: 1   MAAPAVQISPF--SHPKT---NTNTPLSLVPKCSTLREIKQIHAFSIKTHLQYDISVLTK 60

Query: 101 LINFCTRNPTISSMDHAHHLFDKMLDKDIVLFNIMARGYARSNSPYLVFSLFAQVLCSGL 160
           LINFCT NPT +SMD+AHHLFD++   DIV+FN +ARGYARS +P+   SLF+ VLC+GL
Sbjct: 61  LINFCTSNPTSTSMDYAHHLFDQIPHPDIVVFNTVARGYARSGTPFRAISLFSHVLCAGL 120

Query: 161 LPDDYTFSSLLKACAGSKALEEGRQLHCFAIKLGLGHNIYICPTLINMYAACNDMNAARG 220
            PDDYTF SLLKACAGSKALEEG+QLHCFAIK GL  NIY+CPTLINMY  CND++AAR 
Sbjct: 121 FPDDYTFPSLLKACAGSKALEEGKQLHCFAIKFGLHLNIYVCPTLINMYTECNDLDAARR 180

Query: 221 VFDGMEEPCIVSYNAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLSIIMSCALLGA 280
           VFD + +PC+V +NA+I GYARSS+PNEAL+LFRE+QASN++PTDVTML  + SCALLGA
Sbjct: 181 VFDKITDPCVVIHNAMIKGYARSSRPNEALALFREMQASNVKPTDVTMLCALSSCALLGA 239

Query: 281 LDLG 285
           LDLG
Sbjct: 241 LDLG 239

The following BLAST results are available for this feature:
BLAST of Cp4.1LG09g01750 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PP145_ARATH8.5e-7958.06Pentatricopeptide repeat-containing protein At2g02980, chloroplastic OS=Arabidop... [more]
PPR21_ARATH8.3e-3430.88Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidop... [more]
PP449_ARATH2.4e-3333.73Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana GN... [more]
PP182_ARATH2.5e-3033.01Pentatricopeptide repeat-containing protein At2g33760 OS=Arabidopsis thaliana GN... [more]
PP330_ARATH2.5e-3034.88Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana GN... [more]
BLAST of Cp4.1LG09g01750 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KU15_CUCSA3.6e-11685.60Uncharacterized protein OS=Cucumis sativus GN=Csa_5G605160 PE=4 SV=1[more]
D7TN78_VITVI1.0e-9172.05Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0026g02510 PE=4 SV=... [more]
M5XQC4_PRUPE1.2e-8769.67Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016366mg PE=4 SV=1[more]
A0A0L9USR2_PHAAN1.5e-8567.48Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan06g106700 PE=4 SV=1[more]
A0A061EHY5_THECC1.9e-8564.00Pentatricopeptide repeat (PPR) superfamily protein OS=Theobroma cacao GN=TCM_011... [more]
BLAST of Cp4.1LG09g01750 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G02980.14.8e-8058.06 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT1G08070.14.7e-3530.88 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT5G66520.11.4e-3433.73 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT2G33760.11.4e-3133.01 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT4G21065.11.4e-3134.88 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
BLAST of Cp4.1LG09g01750 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659091079|ref|XP_008446357.1|3.9e-11685.60PREDICTED: pentatricopeptide repeat-containing protein At2g02980 [Cucumis melo][more]
gi|700196745|gb|KGN51922.1|5.1e-11685.60hypothetical protein Csa_5G605160 [Cucumis sativus][more]
gi|225425668|ref|XP_002269694.1|1.5e-9172.05PREDICTED: pentatricopeptide repeat-containing protein At2g02980 [Vitis vinifera... [more]
gi|596294817|ref|XP_007226900.1|1.7e-8769.67hypothetical protein PRUPE_ppa016366mg [Prunus persica][more]
gi|657994316|ref|XP_008389463.1|2.9e-8768.03PREDICTED: pentatricopeptide repeat-containing protein At2g02980 [Malus domestic... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0031425 chloroplast RNA processing
biological_process GO:0016556 mRNA modification
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
biological_process GO:0009451 RNA modification
biological_process GO:0008150 biological_process
cellular_component GO:0009507 chloroplast
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0004519 endonuclease activity
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG09g01750.1Cp4.1LG09g01750.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 130..159
score: 0.42coord: 204..227
score:
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 228..275
score: 9.6
IPR002885Pentatricopeptide repeatTIGRFAMsTIGR00756TIGR00756coord: 231..264
score: 6.
IPR002885Pentatricopeptide repeatPROFILEPS51375PPRcoord: 128..162
score: 8.89coord: 229..263
score: 11.619coord: 198..228
score: 6.818coord: 94..127
score: 5.579coord: 163..197
score: 7
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 71..284
score: 2.9E
NoneNo IPR availablePANTHERPTHR24015:SF44SUBFAMILY NOT NAMEDcoord: 71..284
score: 2.9E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG09g01750Cucsa.285030Cucumber (Gy14) v1cgycpeB0745
Cp4.1LG09g01750CmaCh18G011490Cucurbita maxima (Rimu)cmacpeB415
Cp4.1LG09g01750Cla010188Watermelon (97103) v1cpewmB031
Cp4.1LG09g01750Csa5G605160Cucumber (Chinese Long) v2cpecuB041
Cp4.1LG09g01750ClCG05G024240Watermelon (Charleston Gray)cpewcgB045
Cp4.1LG09g01750CSPI05G23780Wild cucumber (PI 183967)cpecpiB036
Cp4.1LG09g01750MELO3C001979.2Melon (DHL92) v3.6.1cpemedB034
Cp4.1LG09g01750Bhi07G001274Wax gourdcpewgoB0058
Cp4.1LG09g01750CsGy5G023320Cucumber (Gy14) v2cgybcpeB581
Cp4.1LG09g01750Carg17272Silver-seed gourdcarcpeB0146
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG09g01750Silver-seed gourdcarcpeB0979
Cp4.1LG09g01750Cucumber (Chinese Long) v3cpecucB0020
Cp4.1LG09g01750Cucumber (Chinese Long) v3cpecucB0027
Cp4.1LG09g01750Cucumber (Chinese Long) v3cpecucB0043
Cp4.1LG09g01750Cucumber (Chinese Long) v3cpecucB0047
Cp4.1LG09g01750Wax gourdcpewgoB0023
Cp4.1LG09g01750Wax gourdcpewgoB0051
Cp4.1LG09g01750Wax gourdcpewgoB0062
Cp4.1LG09g01750Cucurbita pepo (Zucchini)cpecpeB031
Cp4.1LG09g01750Cucurbita pepo (Zucchini)cpecpeB034
Cp4.1LG09g01750Cucurbita pepo (Zucchini)cpecpeB039
Cp4.1LG09g01750Cucurbita pepo (Zucchini)cpecpeB051
Cp4.1LG09g01750Cucurbita pepo (Zucchini)cpecpeB054
Cp4.1LG09g01750Cucumber (Gy14) v1cgycpeB0248
Cp4.1LG09g01750Cucurbita maxima (Rimu)cmacpeB458
Cp4.1LG09g01750Cucurbita maxima (Rimu)cmacpeB695
Cp4.1LG09g01750Cucurbita moschata (Rifu)cmocpeB376
Cp4.1LG09g01750Cucurbita moschata (Rifu)cmocpeB647
Cp4.1LG09g01750Wild cucumber (PI 183967)cpecpiB018
Cp4.1LG09g01750Wild cucumber (PI 183967)cpecpiB039
Cp4.1LG09g01750Cucumber (Chinese Long) v2cpecuB026
Cp4.1LG09g01750Cucumber (Chinese Long) v2cpecuB044
Cp4.1LG09g01750Bottle gourd (USVL1VR-Ls)cpelsiB024
Cp4.1LG09g01750Bottle gourd (USVL1VR-Ls)cpelsiB028
Cp4.1LG09g01750Bottle gourd (USVL1VR-Ls)cpelsiB032
Cp4.1LG09g01750Watermelon (Charleston Gray)cpewcgB040
Cp4.1LG09g01750Watermelon (Charleston Gray)cpewcgB017
Cp4.1LG09g01750Watermelon (97103) v1cpewmB020
Cp4.1LG09g01750Watermelon (97103) v1cpewmB051
Cp4.1LG09g01750Melon (DHL92) v3.5.1cpemeB019
Cp4.1LG09g01750Melon (DHL92) v3.5.1cpemeB024
Cp4.1LG09g01750Melon (DHL92) v3.5.1cpemeB029
Cp4.1LG09g01750Cucumber (Gy14) v2cgybcpeB009
Cp4.1LG09g01750Cucumber (Gy14) v2cgybcpeB014
Cp4.1LG09g01750Cucumber (Gy14) v2cgybcpeB585
Cp4.1LG09g01750Melon (DHL92) v3.6.1cpemedB021
Cp4.1LG09g01750Melon (DHL92) v3.6.1cpemedB028
Cp4.1LG09g01750Melon (DHL92) v3.6.1cpemedB039
Cp4.1LG09g01750Silver-seed gourdcarcpeB0067
Cp4.1LG09g01750Silver-seed gourdcarcpeB0364
Cp4.1LG09g01750Silver-seed gourdcarcpeB0540