Cp4.1LG09g01190 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG09g01190
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionPentatricopeptide repeat-containing protein
LocationCp4.1LG09 : 670227 .. 673996 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTTGTTAGATTCGATCAAAGATTGTAAGAACTTAAGGATCTTTAAGAAGATTCATGCGCAGTTGGTAACATCAGGATTAGTTTACGATGATTTTGTCACAAACAAAGTGGTTGAATTCTTTGCCAATTTTGTTGAGTTTGGCGACTATGCCTGTGATTATCTCAAACAACTCAACACGCGCTTAGGTTCGTTTCCATTTAACTCACTGATTAATGGATATGCTGGTGGTGAGTTCCCACAAATGGCGGTTTCAGTTTATAGAAGGATGGCGCGAGATGGGTTTGTGCCTGATTTGTTTACTTTTCCAGTGCTTTTTAAAGCATGCTCTAACTTTTCAGGGAGCAGAGAAGGTAGACAGGTTCATGGCGTGGTGGTTAAGTTGGGGATTTTGAGTGATATTTTTGTGCAAAACTCGCTGGTTTGTTGCTATGGAGCTTGTGAGGATTTTTCTTGTGCAGGTAAGGTGTTCGATGAAATGCTTGTTCGAGATGTTGTTTCGTGGAACAGTTTGATATCTGGGTTCATGAAGGCGGGGCGTTTTGATGACGCAATTTCTTTGTTTTTCAGGATGGATGTGGAACCGAGCGTTGCAACTTTAGTTAGTGTGCTTGCTGCTTGTGCAAGAAAGGGAGACTTGTACATGGGGAAGGGGATTCATGGTATGATCCAGCGAAGGTTTAAGTTGGATTTGGTACTAGGTAATGCAATGCTGGATATGTATGCAAAGAATGGATGTTTATATGAAGCTAAGAACATATTTGATGAGCTCCCAACAAGAGATATTGTGTCATGGACTATCATGATCACTGGATTGGTGCAGAGTAACCATCCAAAAGAGTCCTTGGAGCTGTTTTGGATGATGCGAAACTTGGGCATTAGCCCTGATGGTATTATCTTAACTAGTGTTCTATCTGCTTGTGCTAGCCTAGGAACACTTGAGTATGGAACATGGGTCCATGAGTACATTGATCAAAGAGGAATCAAATGGGATATCCATATTGGAACTGCTATTGTCGACATGTATGCCAAATGCGGCTGTGTCGAAATGGCTCGGCAAATTTTTAATAACATGCCTCAAAGAAATACCTTCACTTGGAACGCCTGGCTATGCGGTCTGGCTATGCATGGACTTGCGCACGAAGCGTTATATCTTTTTGAAGTCATGATAATATCTGGTGTCAAGCCTAATGAGGTAACATTTCTAGCAATTTTGACAGCTTGCTGCCATTCTGGTCTGGTTGATGAAGGGCGCAAGTACTTTGATAACATGAGTAGTCAAAGGTACAATTTGTCTCCGAAGTTGGAGCATTATGGATGCATGATCGATTTGTTCTGTCGAGCGGGGCTCTTGGAGGAAGCTGTGGAGTTGGTAAGGACCATGCCAATGAAGCCTGATGTGCTTATCTGGGGAGTGCTACTAAATGCTTGCAAAACTGTTGGAAATGTTGAGCTCTCTCAACACATACAAGAGTACATCTTGGAACTTGATCCGGAGGATAGCGGAGTCTTCGTGCTGCTGTCCAATATATCTGCTACTAATGAAAGATGGTCCAATGTGACTCGATTAAGGAGGTTGATGAAAGATAGAGGTGTAAAGAAATCACCTGGATCAAGTGTCATTGAGGTGGATGGTAAGGCTCACGAATTCGTGGCTGGCGATATTAGTACCCTTGAAATCGAAGAAATCTACAAGGTGTTAACCCTCATTAACTCTGTCTTCCATGAAAGCCATTTGATGCACCCATTGTAGGTTGCTGGTTCACTTCTAGTATATGTTTCTTTGCCTTTTAGTACATAATTACGTTGCTTCAAATGGACTATTACATTCTATCATGCTGTGTTTGATGTGAATATCTCCTTGTCCATGCTCTTGAACTTTAACTTTTACCGGTTGATGCTGTGGAAAGTCTGTTATTAAATGATCTACATTGTGGGAGTCACCTGTGTGCCATATACTCTTCATGCTCATTTGAGTTGATCGGAATGATTAGACACATATAGTAGACATTGTCCTCTTTGGGCTTTCCTTTTCAGGCTTCCCCTCAAGGTTTTTAAAACGCGTCTGCTAGAGAAAGGTTTCCACACCTGTATAAAGGGTACTTCGTTCTCCTCCCCAGCCAATGTGGGATTGTGGGATCTCACATACAGTAACGGCCCAAGCCTACCGCTAGCGGATATTGTCCTCTTTAGGCTTTCCCTTTCAGGTTTTCCCTCAAGGTTGTCAAAACACGTTTGCTAGTGAGAGGTAAAGAATTCTTCGTTTCCCTCTCTAAGTGATGTGAGATCTCACATATATGATGTATATCTTGAGTCTATAGAGTTCTCGTAGATTGCATGATGATCATGTATATTTCTTTCCAACTGGTGGTTCATCCAGCAGACCTCTGTTTTAAGCTGCCAGAAAACTTTAGCTTAGAGGAAGGAGTCATGTGTGAGCCCTTGAGCGTTGGTGTTCATGTTTGTCATTGGTCCAGAAACAAATGTTTTGGTGATGGAAGATAAATGTAACTAAAATAGGGGCGTGAAGGCCAAGTTTCGAAGATCAGATAGCCACAAGATAAAGGATAAAGGATAAGGGATAAGTGATTAGAACCACACAAATTCAAGACAGCCTCATAGAACATTATGCTTTGATTTCATGGACAATTCGGATATTCTTTAACAGAAACAGAGCTGGTTTCAAAGGAAGAAAAAGGAGATTACCCCAAATGGGTTGTAAGCTAAACACCCCCAACGCTCCATTTCTCTTCAAATTCCCCACAAAAAGCCCAAAACTTGGAGGGAAAACCTTCACTTTCTGTCCCAATTTCTGTCTCAGCAGTCAAAACCAAGAAACACCCACCATTTCCACCGCCAAAACCCCTCAAACCCAGATCCCAAAATCTAATTTTTCCACCGTTAATTTCAAGTCTCTCACAGCCTGTAAGCTTGGCATCTCCAGATACCCTGATTTTGAATACAACGCTGAAGGAGGAACAGGAACTGGGTCCGCCAAGATCGACGGCGACGGTGGCAGCGGCGAAGTTTCAGTTTCATTCGATGTGGGCACCCTCTATATCCCGCCATTGACAACTCAAACCACAAAGTTTTTTGGTCTTCCATTGCCACCGTTTCTGAAGATCGACATCGTCCCAGAACTCTTCCACGGGAACATCAATCAAGAATCCGGCAAGGTAATGTCTGATAAAAGTCCTACCCATCCGAACAAAATCCAATACGAAAACATTGATGTGCTATATGTGCAAATTTTGATGCAGATTGAGCTAGAATTCAAGGCAAAGTTCTTATTCTCAGTTGGGAATGTGTATAAAGCTCCTCCATTGCTGGTAGAAACAGTGCTGACATCTGAGGAATCAAAAGGAAGCATAAGAAGTGGAAAAGGTGAAAGATTAGACGAAAAGGGAAAGTGCAGATTGGTGGGGGTAGCCATTGTTGACCCCATTGATGATCTGCTTCTCAACTCCTTCCTCTCTCTCCCCACTGAATGCATTGCAAAACTCAATGCCATAATCACATTCTCTTAGACACACAAAGAAGAAACTGTAATTTTTGTTTGGGACAAAACCAGACACATACATATTGAAACCAACAATTTTACTGCATAGGTACTTGTTCTGTTCTTCCATCATTTCTATTTGTGTTTGAAGTGGAGAGCATATTAATAATATCTCCTTTATATGGCTGAGATTTTGTTTTAGGAGAAGAACATGGTTTTAGTTTTCCCTTCATTATTTTATAAAATCTAGAATAATTTATTAAAAAAAA

mRNA sequence

ATGGGTTTGTTAGATTCGATCAAAGATTGTAAGAACTTAAGGATCTTTAAGAAGATTCATGCGCAGTTGGTAACATCAGGATTAGTTTACGATGATTTTGTCACAAACAAAGTGGTTGAATTCTTTGCCAATTTTGTTGAGTTTGGCGACTATGCCTGTGATTATCTCAAACAACTCAACACGCGCTTAGGTTCGTTTCCATTTAACTCACTGATTAATGGATATGCTGGTGGTGAGTTCCCACAAATGGCGGTTTCAGTTTATAGAAGGATGGCGCGAGATGGGTTTGTGCCTGATTTGTTTACTTTTCCAGTGCTTTTTAAAGCATGCTCTAACTTTTCAGGGAGCAGAGAAGGTAGACAGGTTCATGGCGTGGTGGTTAAGTTGGGGATTTTGAGTGATATTTTTGTGCAAAACTCGCTGGTTTGTTGCTATGGAGCTTGTGAGGATTTTTCTTGTGCAGGTAAGGTGTTCGATGAAATGCTTGTTCGAGATGTTGTTTCGTGGAACAGTTTGATATCTGGGTTCATGAAGGCGGGGCGTTTTGATGACGCAATTTCTTTGTTTTTCAGGATGGATGTGGAACCGAGCGTTGCAACTTTAGTTAGTGTGCTTGCTGCTTGTGCAAGAAAGGGAGACTTGTACATGGGGAAGGGGATTCATGGTATGATCCAGCGAAGGTTTAAGTTGGATTTGGTACTAGGTAATGCAATGCTGGATATGTATGCAAAGAATGGATGTTTATATGAAGCTAAGAACATATTTGATGAGCTCCCAACAAGAGATATTGTGTCATGGACTATCATGATCACTGGATTGGTGCAGAGTAACCATCCAAAAGAGTCCTTGGAGCTGTTTTGGATGATGCGAAACTTGGGCATTAGCCCTGATGGTATTATCTTAACTAGTGTTCTATCTGCTTGTGCTAGCCTAGGAACACTTGAAAACAGAGCTGGTTTCAAAGGAAGAAAAAGGAGATTACCCCAAATGGGTTGTAAGCTAAACACCCCCAACGCTCCATTTCTCTTCAAATTCCCCACAAAAAGCCCAAAACTTGGAGGGAAAACCTTCACTTTCTGTCCCAATTTCTGTCTCAGCAGTCAAAACCAAGAAACACCCACCATTTCCACCGCCAAAACCCCTCAAACCCAGATCCCAAAATCTAATTTTTCCACCGTTAATTTCAAGTCTCTCACAGCCTGTAAGCTTGGCATCTCCAGATACCCTGATTTTGAATACAACGCTGAAGGAGGAACAGGAACTGGGTCCGCCAAGATCGACGGCGACGGTGGCAGCGGCGAAGTTTCAGTTTCATTCGATGTGGGCACCCTCTATATCCCGCCATTGACAACTCAAACCACAAAGTTTTTTGGTCTTCCATTGCCACCGTTTCTGAAGATCGACATCGTCCCAGAACTCTTCCACGGGAACATCAATCAAGAATCCGGCAAGATTGAGCTAGAATTCAAGGCAAAGTTCTTATTCTCAGTTGGGAATGTGTATAAAGCTCCTCCATTGCTGGTAGAAACAGTGCTGACATCTGAGGAATCAAAAGGAAGCATAAGAAGTGGAAAAGGTGAAAGATTAGACGAAAAGGGAAAGTGCAGATTGGTGGGGGTAGCCATTGTTGACCCCATTGATGATCTGCTTCTCAACTCCTTCCTCTCTCTCCCCACTGAATGCATTGCAAAACTCAATGCCATAATCACATTCTCTTAGACACACAAAGAAGAAACTGTAATTTTTGTTTGGGACAAAACCAGACACATACATATTGAAACCAACAATTTTACTGCATAGGTACTTGTTCTGTTCTTCCATCATTTCTATTTGTGTTTGAAGTGGAGAGCATATTAATAATATCTCCTTTATATGGCTGAGATTTTGTTTTAGGAGAAGAACATGGTTTTAGTTTTCCCTTCATTATTTTATAAAATCTAGAATAATTTATTAAAAAAAA

Coding sequence (CDS)

ATGGGTTTGTTAGATTCGATCAAAGATTGTAAGAACTTAAGGATCTTTAAGAAGATTCATGCGCAGTTGGTAACATCAGGATTAGTTTACGATGATTTTGTCACAAACAAAGTGGTTGAATTCTTTGCCAATTTTGTTGAGTTTGGCGACTATGCCTGTGATTATCTCAAACAACTCAACACGCGCTTAGGTTCGTTTCCATTTAACTCACTGATTAATGGATATGCTGGTGGTGAGTTCCCACAAATGGCGGTTTCAGTTTATAGAAGGATGGCGCGAGATGGGTTTGTGCCTGATTTGTTTACTTTTCCAGTGCTTTTTAAAGCATGCTCTAACTTTTCAGGGAGCAGAGAAGGTAGACAGGTTCATGGCGTGGTGGTTAAGTTGGGGATTTTGAGTGATATTTTTGTGCAAAACTCGCTGGTTTGTTGCTATGGAGCTTGTGAGGATTTTTCTTGTGCAGGTAAGGTGTTCGATGAAATGCTTGTTCGAGATGTTGTTTCGTGGAACAGTTTGATATCTGGGTTCATGAAGGCGGGGCGTTTTGATGACGCAATTTCTTTGTTTTTCAGGATGGATGTGGAACCGAGCGTTGCAACTTTAGTTAGTGTGCTTGCTGCTTGTGCAAGAAAGGGAGACTTGTACATGGGGAAGGGGATTCATGGTATGATCCAGCGAAGGTTTAAGTTGGATTTGGTACTAGGTAATGCAATGCTGGATATGTATGCAAAGAATGGATGTTTATATGAAGCTAAGAACATATTTGATGAGCTCCCAACAAGAGATATTGTGTCATGGACTATCATGATCACTGGATTGGTGCAGAGTAACCATCCAAAAGAGTCCTTGGAGCTGTTTTGGATGATGCGAAACTTGGGCATTAGCCCTGATGGTATTATCTTAACTAGTGTTCTATCTGCTTGTGCTAGCCTAGGAACACTTGAAAACAGAGCTGGTTTCAAAGGAAGAAAAAGGAGATTACCCCAAATGGGTTGTAAGCTAAACACCCCCAACGCTCCATTTCTCTTCAAATTCCCCACAAAAAGCCCAAAACTTGGAGGGAAAACCTTCACTTTCTGTCCCAATTTCTGTCTCAGCAGTCAAAACCAAGAAACACCCACCATTTCCACCGCCAAAACCCCTCAAACCCAGATCCCAAAATCTAATTTTTCCACCGTTAATTTCAAGTCTCTCACAGCCTGTAAGCTTGGCATCTCCAGATACCCTGATTTTGAATACAACGCTGAAGGAGGAACAGGAACTGGGTCCGCCAAGATCGACGGCGACGGTGGCAGCGGCGAAGTTTCAGTTTCATTCGATGTGGGCACCCTCTATATCCCGCCATTGACAACTCAAACCACAAAGTTTTTTGGTCTTCCATTGCCACCGTTTCTGAAGATCGACATCGTCCCAGAACTCTTCCACGGGAACATCAATCAAGAATCCGGCAAGATTGAGCTAGAATTCAAGGCAAAGTTCTTATTCTCAGTTGGGAATGTGTATAAAGCTCCTCCATTGCTGGTAGAAACAGTGCTGACATCTGAGGAATCAAAAGGAAGCATAAGAAGTGGAAAAGGTGAAAGATTAGACGAAAAGGGAAAGTGCAGATTGGTGGGGGTAGCCATTGTTGACCCCATTGATGATCTGCTTCTCAACTCCTTCCTCTCTCTCCCCACTGAATGCATTGCAAAACTCAATGCCATAATCACATTCTCTTAG

Protein sequence

MGLLDSIKDCKNLRIFKKIHAQLVTSGLVYDDFVTNKVVEFFANFVEFGDYACDYLKQLNTRLGSFPFNSLINGYAGGEFPQMAVSVYRRMARDGFVPDLFTFPVLFKACSNFSGSREGRQVHGVVVKLGILSDIFVQNSLVCCYGACEDFSCAGKVFDEMLVRDVVSWNSLISGFMKAGRFDDAISLFFRMDVEPSVATLVSVLAACARKGDLYMGKGIHGMIQRRFKLDLVLGNAMLDMYAKNGCLYEAKNIFDELPTRDIVSWTIMITGLVQSNHPKESLELFWMMRNLGISPDGIILTSVLSACASLGTLENRAGFKGRKRRLPQMGCKLNTPNAPFLFKFPTKSPKLGGKTFTFCPNFCLSSQNQETPTISTAKTPQTQIPKSNFSTVNFKSLTACKLGISRYPDFEYNAEGGTGTGSAKIDGDGGSGEVSVSFDVGTLYIPPLTTQTTKFFGLPLPPFLKIDIVPELFHGNINQESGKIELEFKAKFLFSVGNVYKAPPLLVETVLTSEESKGSIRSGKGERLDEKGKCRLVGVAIVDPIDDLLLNSFLSLPTECIAKLNAIITFS
Homology
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BLAST of Cp4.1LG09g01190 vs. Swiss-Prot
Match: PP355_ARATH (Pentatricopeptide repeat-containing protein At4g38010 OS=Arabidopsis thaliana GN=PCMP-E45 PE=3 SV=1)

HSP 1 Score: 308.5 bits (789), Expect = 1.5e-82
Identity = 153/316 (48.42%), Postives = 210/316 (66.46%), Query Frame = 1 

Query: 3   LLDSIKDCKNLRIFKKIHAQLVTSGLVYDDFVTNKVVEFFANFVEFGDYACDYLKQLNTR 62
           LL+ I  C +LR+FK+I  QL+T  L+ DD + NKVV F     +F  Y+   L  + + 
Sbjct: 9   LLELISRCSSLRVFKQIQTQLITRDLLRDDLIINKVVTFLGKSADFASYSSVILHSIRSV 68

Query: 63  LGSFPFNSLINGYAGGEFPQMAVSVYRRMARDGFVPDLFTFPVLFKACSNFSGSREGRQV 122
           L SF +N+L++ YA  + P++ +  Y+    +GF PD+FTFP +FKAC  FSG REG+Q+
Sbjct: 69  LSSFSYNTLLSSYAVCDKPRVTIFAYKTFVSNGFSPDMFTFPPVFKACGKFSGIREGKQI 128

Query: 123 HGVVVKLGILSDIFVQNSLVCCYGACEDFSCAGKVFDEMLVRDVVSWNSLISGFMKAGRF 182
           HG+V K+G   DI+VQNSLV  YG C +   A KVF EM VRDVVSW  +I+GF + G +
Sbjct: 129 HGIVTKMGFYDDIYVQNSLVHFYGVCGESRNACKVFGEMPVRDVVSWTGIITGFTRTGLY 188

Query: 183 DDAISLFFRMDVEPSVATLVSVLAACARKGDLYMGKGIHGMIQRRFKL-DLVLGNAMLDM 242
            +A+  F +MDVEP++AT V VL +  R G L +GKGIHG+I +R  L  L  GNA++DM
Sbjct: 189 KEALDTFSKMDVEPNLATYVCVLVSSGRVGCLSLGKGIHGLILKRASLISLETGNALIDM 248

Query: 243 YAKNGCLYEAKNIFDELPTRDIVSWTIMITGLVQSNHPKESLELFWMMR-NLGISPDGII 302
           Y K   L +A  +F EL  +D VSW  MI+GLV     KE+++LF +M+ + GI PDG I
Sbjct: 249 YVKCEQLSDAMRVFGELEKKDKVSWNSMISGLVHCERSKEAIDLFSLMQTSSGIKPDGHI 308

Query: 303 LTSVLSACASLGTLEN 317
           LTSVLSACASLG +++
Sbjct: 309 LTSVLSACASLGAVDH 324

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BLAST of Cp4.1LG09g01190 vs. Swiss-Prot
Match: PP184_ARATH (Pentatricopeptide repeat-containing protein At2g34400 OS=Arabidopsis thaliana GN=PCMP-E23 PE=3 SV=2)

HSP 1 Score: 203.4 bits (516), Expect = 6.8e-51
Identity = 114/315 (36.19%), Postives = 174/315 (55.24%), Query Frame = 1 

Query: 7   IKDCKNLRIFKKIHAQLVTSGLVYDDFVTNKVVEFFANFVEFGDYA-CDYLKQLNTRLGS 66
           +K C ++   ++I AQ++   +   +F+  K VE        GD+    +L  +      
Sbjct: 44  LKKCISVNQLRQIQAQMLLHSVEKPNFLIPKAVEL-------GDFNYSSFLFSVTEEPNH 103

Query: 67  FPFNSLINGYAGG-EFPQMAVSVYRRMARDGFVPDLFTFPVLFKACSNFSGSREGRQVHG 126
           + FN +I G        + A+S+YRRM   G  PD FT+  +F AC+       GR VH 
Sbjct: 104 YSFNYMIRGLTNTWNDHEAALSLYRRMKFSGLKPDKFTYNFVFIACAKLEEIGVGRSVHS 163

Query: 127 VVVKLGILSDIFVQNSLVCCYGACEDFSCAGKVFDEMLVRDVVSWNSLISGFMKAGRFDD 186
            + K+G+  D+ + +SL+  Y  C     A K+FDE+  RD VSWNS+ISG+ +AG   D
Sbjct: 164 SLFKVGLERDVHINHSLIMMYAKCGQVGYARKLFDEITERDTVSWNSMISGYSEAGYAKD 223

Query: 187 AISLFFRMD---VEPSVATLVSVLAACARKGDLYMGKGIHGM-IQRRFKLDLVLGNAMLD 246
           A+ LF +M+    EP   TLVS+L AC+  GDL  G+ +  M I ++  L   LG+ ++ 
Sbjct: 224 AMDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITKKIGLSTFLGSKLIS 283

Query: 247 MYAKNGCLYEAKNIFDELPTRDIVSWTIMITGLVQSNHPKESLELFWMMRNLGISPDGII 306
           MY K G L  A+ +F+++  +D V+WT MIT   Q+    E+ +LF+ M   G+SPD   
Sbjct: 284 MYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGT 343

Query: 307 LTSVLSACASLGTLE 316
           L++VLSAC S+G LE
Sbjct: 344 LSTVLSACGSVGALE 351

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BLAST of Cp4.1LG09g01190 vs. Swiss-Prot
Match: PP449_ARATH (Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 3.4e-50
Identity = 110/352 (31.25%), Postives = 183/352 (51.99%), Query Frame = 1 

Query: 4   LDSIKDCKNLRIFKKIHAQLVTSGLVYDDFVTNKVVEFF-----ANFVEFGDYACDYLKQ 63
           +  ++ C      K+IHA+++ +GL+ D +   K + F      ++F+ +     D   +
Sbjct: 18  MSCLQRCSKQEELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDR 77

Query: 64  LNTRLGSFPFNSLINGYAGGEFPQMAVSVYRRMARDGFVPDLFTFPVLFKACSNFSGSRE 123
            +T    F +N +I G++  + P+ ++ +Y+RM       + +TFP L KACSN S   E
Sbjct: 78  PDT----FLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEE 137

Query: 124 GRQVHGVVVKLGILSDIFVQNSLVCCYGACEDFSCAGKVFDEMLVRDVVSWNSLISGFMK 183
             Q+H  + KLG  +D++  NSL+  Y    +F  A  +FD +   D VSWNS+I G++K
Sbjct: 138 TTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVK 197

Query: 184 AGRFDDAISLFFRM----------------------------------DVEPSVATLVSV 243
           AG+ D A++LF +M                                  DVEP   +L + 
Sbjct: 198 AGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANA 257

Query: 244 LAACARKGDLYMGKGIHGMIQR-RFKLDLVLGNAMLDMYAKNGCLYEAKNIFDELPTRDI 303
           L+ACA+ G L  GK IH  + + R ++D VLG  ++DMYAK G + EA  +F  +  + +
Sbjct: 258 LSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSV 317

Query: 304 VSWTIMITGLVQSNHPKESLELFWMMRNLGISPDGIILTSVLSACASLGTLE 316
            +WT +I+G     H +E++  F  M+ +GI P+ I  T+VL+AC+  G +E
Sbjct: 318 QAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVE 365

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BLAST of Cp4.1LG09g01190 vs. Swiss-Prot
Match: PPR21_ARATH (Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 6.3e-49
Identity = 113/349 (32.38%), Postives = 187/349 (53.58%), Query Frame = 1 

Query: 4   LDSIKDCKNLRIFKKIHAQLVTSGLVYDDFVTNKVVEF--FANFVEFGDYACDYLKQLNT 63
           L  + +CK L+  + IHAQ++  GL   ++  +K++EF   +   E   YA    K +  
Sbjct: 37  LSLLHNCKTLQSLRIIHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQE 96

Query: 64  RLGSFPFNSLINGYAGGEFPQMAVSVYRRMARDGFVPDLFTFPVLFKACSNFSGSREGRQ 123
                 +N++  G+A    P  A+ +Y  M   G +P+ +TFP + K+C+     +EG+Q
Sbjct: 97  P-NLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQ 156

Query: 124 VHGVVVKLGILSDIFVQNSLVCCY---GACED---------------------------- 183
           +HG V+KLG   D++V  SL+  Y   G  ED                            
Sbjct: 157 IHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGY 216

Query: 184 FSCAGKVFDEMLVRDVVSWNSLISGFMKAGRFDDAISLF---FRMDVEPSVATLVSVLAA 243
              A K+FDE+ V+DVVSWN++ISG+ + G + +A+ LF    + +V P  +T+V+V++A
Sbjct: 217 IENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSA 276

Query: 244 CARKGDLYMGKGIHGMI-QRRFKLDLVLGNAMLDMYAKNGCLYEAKNIFDELPTRDIVSW 303
           CA+ G + +G+ +H  I    F  +L + NA++D+Y+K G L  A  +F+ LP +D++SW
Sbjct: 277 CAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISW 336

Query: 304 TIMITGLVQSNHPKESLELFWMMRNLGISPDGIILTSVLSACASLGTLE 316
             +I G    N  KE+L LF  M   G +P+ + + S+L ACA LG ++
Sbjct: 337 NTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAID 384

[Close]
BLAST of Cp4.1LG09g01190 vs. Swiss-Prot
Match: PPR68_ARATH (Pentatricopeptide repeat-containing protein At1g31920 OS=Arabidopsis thaliana GN=PCMP-H11 PE=2 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 8.3e-49
Identity = 105/317 (33.12%), Postives = 179/317 (56.47%), Query Frame = 1 

Query: 7   IKDCKNLRIFKKIHAQLVTSGLVYDD-FVTNKVVEFFAN--FVEFGDYACDYLKQLNTRL 66
           +K C N+  FK++HA+ +   L Y   F  + V+   A+  +    +YA    + ++   
Sbjct: 37  LKRCHNIDEFKQVHARFIKLSLFYSSSFSASSVLAKCAHSGWENSMNYAASIFRGIDDPC 96

Query: 67  GSFPFNSLINGYAGGEFPQMAVSVYRRMARDGFVPDLFTFPVLFKACSNFSGSREGRQVH 126
            +F FN++I GY      + A+  Y  M + G  PD FT+P L KAC+     REG+Q+H
Sbjct: 97  -TFDFNTMIRGYVNVMSFEEALCFYNEMMQRGNEPDNFTYPCLLKACTRLKSIREGKQIH 156

Query: 127 GVVVKLGILSDIFVQNSLVCCYGACEDFSCAGKVFDEMLVRDVVSWNSLISGFMKAGRFD 186
           G V KLG+ +D+FVQNSL+  YG C +   +  VF+++  +   SW+S++S     G + 
Sbjct: 157 GQVFKLGLEADVFVQNSLINMYGRCGEMELSSAVFEKLESKTAASWSSMVSARAGMGMWS 216

Query: 187 DAISLFFRMDVEPSV----ATLVSVLAACARKGDLYMGKGIHGMIQRRF-KLDLVLGNAM 246
           + + LF  M  E ++    + +VS L ACA  G L +G  IHG + R   +L++++  ++
Sbjct: 217 ECLLLFRGMCSETNLKAEESGMVSALLACANTGALNLGMSIHGFLLRNISELNIIVQTSL 276

Query: 247 LDMYAKNGCLYEAKNIFDELPTRDIVSWTIMITGLVQSNHPKESLELFWMMRNLGISPDG 306
           +DMY K GCL +A +IF ++  R+ ++++ MI+GL      + +L +F  M   G+ PD 
Sbjct: 277 VDMYVKCGCLDKALHIFQKMEKRNNLTYSAMISGLALHGEGESALRMFSKMIKEGLEPDH 336

Query: 307 IILTSVLSACASLGTLE 316
           ++  SVL+AC+  G ++
Sbjct: 337 VVYVSVLNACSHSGLVK 352

[Close]
BLAST of Cp4.1LG09g01190 vs. TrEMBL
Match: A0A0A0LF19_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G004700 PE=4 SV=1)

HSP 1 Score: 572.0 bits (1473), Expect = 8.1e-160
Identity = 275/313 (87.86%), Postives = 296/313 (94.57%), Query Frame = 1 

Query: 3   LLDSIKDCKNLRIFKKIHAQLVTSGLVYDDFVTNKVVEFFANFVEFGDYACDYLKQLNTR 62
           LLDSIKDCKNLRIF++IHAQLVTSGLVYDDFVT+KV+EFFANFVE+GDYACDYL+Q NTR
Sbjct: 8   LLDSIKDCKNLRIFRQIHAQLVTSGLVYDDFVTSKVMEFFANFVEYGDYACDYLEQGNTR 67

Query: 63  LGSFPFNSLINGYAGGEFPQMAVSVYRRMARDGFVPDLFTFPVLFKACSNFSGSREGRQV 122
           LGSFPFNSLINGY GGEFPQMAVSVYRRM RDGFVPD+FTFPVL KACSNFSGSREGRQV
Sbjct: 68  LGSFPFNSLINGYVGGEFPQMAVSVYRRMVRDGFVPDMFTFPVLLKACSNFSGSREGRQV 127

Query: 123 HGVVVKLGILSDIFVQNSLVCCYGACEDFSCAGKVFDEMLVRDVVSWNSLISGFMKAGRF 182
           HGVVVKLG+L+D +VQNSL+ CYGAC DFSCAGKVFDEMLVRDVVSWNSLISGFMKAG F
Sbjct: 128 HGVVVKLGLLADHYVQNSLIRCYGACGDFSCAGKVFDEMLVRDVVSWNSLISGFMKAGHF 187

Query: 183 DDAISLFFRMDVEPSVATLVSVLAACARKGDLYMGKGIHGMIQRRFKLDLVLGNAMLDMY 242
           D+AIS+FFRMDVEPS+ TLVSVLAACAR GDL  GKGIHG+I+RRFK++LVLGNAMLDMY
Sbjct: 188 DEAISVFFRMDVEPSMTTLVSVLAACARNGDLCTGKGIHGVIERRFKVNLVLGNAMLDMY 247

Query: 243 AKNGCLYEAKNIFDELPTRDIVSWTIMITGLVQSNHPKESLELFWMMRNLGISPDGIILT 302
            KNGC YEAKNIFDELPTRDIVSWTIMITGLVQS+HPK+SLELF MMR LGISPD IILT
Sbjct: 248 VKNGCFYEAKNIFDELPTRDIVSWTIMITGLVQSDHPKQSLELFSMMRTLGISPDAIILT 307

Query: 303 SVLSACASLGTLE 316
           SVLSACASLGTL+
Sbjct: 308 SVLSACASLGTLD 320

[Close]
BLAST of Cp4.1LG09g01190 vs. TrEMBL
Match: B9I4E0_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0012s13730g PE=4 SV=2)

HSP 1 Score: 395.6 bits (1015), Expect = 1.0e-106
Identity = 189/314 (60.19%), Postives = 242/314 (77.07%), Query Frame = 1 

Query: 3   LLDSIKDCKNLRIFKKIHAQLVTSGLVYDDFVTNKVVEFFANFVEFGDYACDYLKQLNTR 62
           LLDSI+ CK L  FKKIHAQL+TSG+V +DFV N+VVEFFA    F DYACD+L + + +
Sbjct: 12  LLDSIQRCKKLTTFKKIHAQLITSGVVSNDFVVNRVVEFFAKGPNFVDYACDFLSEYDWK 71

Query: 63  LGSFPFNSLINGYAGGEFPQMAVSVYRRMARDGFVPDLFTFPVLFKACSNFSGSREGRQV 122
           + SFPFN+L++GYA G+ P+ A  VYRR+ +DGF+PD+FTFP + K+C+ F G  EGRQV
Sbjct: 72  VSSFPFNALVSGYAIGDRPKTAFLVYRRIVKDGFLPDMFTFPAVLKSCAKFVGIGEGRQV 131

Query: 123 HGVVVKLGILSDIFVQNSLVCCYGACEDFSCAGKVFDEMLVRDVVSWNSLISGFMKAGRF 182
           HGV++K+G + +I+V+NSLV  Y  C+ F  A +VFDEMLVRDVVSW  +ISG+++AG F
Sbjct: 132 HGVIIKMGFVCNIYVENSLVHFYSVCKRFGDASRVFDEMLVRDVVSWTGVISGYVRAGLF 191

Query: 183 DDAISLFFRMDVEPSVATLVSVLAACARKGDLYMGKGIHGM-IQRRFKLDLVLGNAMLDM 242
           D+A+ LF RMDVEP+ AT VSVL AC RKG L +GKGIHG+  +  F + L + NA++DM
Sbjct: 192 DEAVGLFLRMDVEPNAATFVSVLVACGRKGYLSVGKGIHGLSFKSAFGVGLEVSNALMDM 251

Query: 243 YAKNGCLYEAKNIFDELPTRDIVSWTIMITGLVQSNHPKESLELFWMMRNLGISPDGIIL 302
           Y K GCL  AK +FDEL  +DIVSWT +I+GLVQ N PKE+LELF  M++ GI PDGIIL
Sbjct: 252 YVKCGCLPGAKQVFDELAEKDIVSWTSIISGLVQCNCPKEALELFQDMQSSGIEPDGIIL 311

Query: 303 TSVLSACASLGTLE 316
           TSVLSACA LG L+
Sbjct: 312 TSVLSACARLGALD 325

[Close]
BLAST of Cp4.1LG09g01190 vs. TrEMBL
Match: W9S388_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_005358 PE=4 SV=1)

HSP 1 Score: 381.3 bits (978), Expect = 2.0e-102
Identity = 189/315 (60.00%), Postives = 232/315 (73.65%), Query Frame = 1 

Query: 3   LLDSIKDCKNLRIFKKIHAQLVTSGLVYDDFVTNKVVEFFAN-FVEFGDYACDYLKQLNT 62
           +LD I+ C N R FK+IHA L+T+GLVY+D + N VVE+F        DYACD+LK L+ 
Sbjct: 8   VLDYIRRCNNWRSFKQIHAYLLTTGLVYNDLIVNSVVEYFGRPSASVVDYACDFLKHLDW 67

Query: 63  RLGSFPFNSLINGYAGGEFPQMAVSVYRRMARDGFVPDLFTFPVLFKACSNFSGSREGRQ 122
           R  SFPFN++I+GY G E P+ AV VYRR+ RDGF+PD FTFP + K+C+ F G REGRQ
Sbjct: 68  RSNSFPFNTMISGYTGSEMPKAAVLVYRRIVRDGFMPDTFTFPAVLKSCTKFLGIREGRQ 127

Query: 123 VHGVVVKLGILSDIFVQNSLVCCYGACEDFSCAGKVFDEMLVRDVVSWNSLISGFMKAGR 182
           VH V+V +G    ++VQNSLV  Y  C D   A KVFDEMLVRDVVSW  LISGF++   
Sbjct: 128 VHSVIVVMGFSCHVYVQNSLVHLYSVCGDCDGARKVFDEMLVRDVVSWTCLISGFVRTRL 187

Query: 183 FDDAISLFFRMDVEPSVATLVSVLAACARKGDLYMGKGIHGMI-QRRFKLDLVLGNAMLD 242
           FD+AI+LF RMDVEP++ATLVSVL AC RKG L +GKGIHG++ +R   + LV+ NA++D
Sbjct: 188 FDEAIALFLRMDVEPNMATLVSVLVACGRKGYLNVGKGIHGVVFKRPMHIPLVVSNALMD 247

Query: 243 MYAKNGCLYEAKNIFDELPTRDIVSWTIMITGLVQSNHPKESLELFWMMRNLGISPDGII 302
           MY K   L EAK IFDEL  RDIVSWT MI+GL Q  HPKE+LELF  M+  G+ PD II
Sbjct: 248 MYVKCEKLCEAKQIFDELDERDIVSWTCMISGLAQCKHPKEALELFSNMQPSGVEPDEII 307

Query: 303 LTSVLSACASLGTLE 316
           LT+VLSACASLG L+
Sbjct: 308 LTAVLSACASLGALD 322

[Close]
BLAST of Cp4.1LG09g01190 vs. TrEMBL
Match: F6HP80_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0100g00190 PE=4 SV=1)

HSP 1 Score: 375.9 bits (964), Expect = 8.5e-101
Identity = 181/314 (57.64%), Postives = 234/314 (74.52%), Query Frame = 1 

Query: 3   LLDSIKDCKNLRIFKKIHAQLVTSGLVYDDFVTNKVVEFFANFVEFGDYACDYLKQLNTR 62
           LL+SI  CK +R  K+IHA L+ SGL++D+FV +KV EFF   + F DYA D+L Q +  
Sbjct: 8   LLNSIHRCKTIRSLKQIHAHLIASGLLHDEFVLSKVSEFFGKHIGFVDYAFDFLNQTDLH 67

Query: 63  LGSFPFNSLINGYAGGEFPQMAVSVYRRMARDGFVPDLFTFPVLFKACSNFSGSREGRQV 122
           +G+ P+N+LI  YA    P+ A  VY R+  +GFVPD++TFPV+ KAC+ F G +EG QV
Sbjct: 68  VGTLPYNTLIAAYASSCTPKAAFLVYGRIVGNGFVPDMYTFPVVLKACTKFLGVQEGEQV 127

Query: 123 HGVVVKLGILSDIFVQNSLVCCYGACEDFSCAGKVFDEMLVRDVVSWNSLISGFMKAGRF 182
           HGV VK+G L D++VQNSL+  Y  C  +  AG+VFDEMLVRDVVSW  LISG+++ G F
Sbjct: 128 HGVAVKMGFLCDLYVQNSLLHFYSVCGKWGGAGRVFDEMLVRDVVSWTGLISGYVRTGLF 187

Query: 183 DDAISLFFRMDVEPSVATLVSVLAACARKGDLYMGKGIHGMIQRR-FKLDLVLGNAMLDM 242
           D+AI+LF +MDV P+VAT VSVL AC R G L MGKG+HG++ +R F + LV+GNA++DM
Sbjct: 188 DEAINLFLKMDVVPNVATFVSVLVACGRMGYLSMGKGVHGLVYKRAFGIGLVVGNALVDM 247

Query: 243 YAKNGCLYEAKNIFDELPTRDIVSWTIMITGLVQSNHPKESLELFWMMRNLGISPDGIIL 302
           Y K  CL EA+ +FDELP RDIVSWT +I+GLVQ   PK+SLELF+ M+  G+ PD IIL
Sbjct: 248 YVKCECLCEARKLFDELPDRDIVSWTSIISGLVQCKQPKDSLELFYDMQISGVEPDRIIL 307

Query: 303 TSVLSACASLGTLE 316
           TSVLSACASLG L+
Sbjct: 308 TSVLSACASLGALD 321

[Close]
BLAST of Cp4.1LG09g01190 vs. TrEMBL
Match: A0A0A0L5S5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G180240 PE=4 SV=1)

HSP 1 Score: 369.8 bits (948), Expect = 6.1e-99
Identity = 185/244 (75.82%), Postives = 208/244 (85.25%), Query Frame = 1 

Query: 330 MGCKLNTPNAPFLFKFPTKSPKLGGKTFTFCPNFCLSSQNQETPTISTAKTPQTQIPKSN 389
           MGCKLN+PN P LFKF TK   LGGK+  F P  CL+SQNQETPTI T     T+IPKSN
Sbjct: 1   MGCKLNSPNTPILFKFSTKRSNLGGKSIKFSPTSCLNSQNQETPTIPTT----TKIPKSN 60

Query: 390 FSTVNFKSLTACKLGISRYPDFEYNAEGGTGTGSAKIDGDGGSGE-VSVSFDVGTLYIPP 449
            STV+FKSLTACKLGISR+PDF+YNAEGGTGTGS KI  D GS   + VSFDV TLYIPP
Sbjct: 61  ISTVHFKSLTACKLGISRFPDFQYNAEGGTGTGSVKIHDDNGSNSRLLVSFDVDTLYIPP 120

Query: 450 LTTQTTKFFGLPLPPFLKIDIVPELFHGNINQESGKIELEFKAKFLFSVGNVYKAPPLLV 509
           LTTQTTKF GLPLPPFLKID++PE F G+INQESGK+ELEF++KF+FS+G++Y+APPLLV
Sbjct: 121 LTTQTTKFLGLPLPPFLKIDVLPEFFQGSINQESGKVELEFESKFIFSIGSLYRAPPLLV 180

Query: 510 ETVLTSEESKGSIRSGKGERLDEKGKCRLVGVAIVDPIDDLLLNSFLSLPTECIAKLNAI 569
           +TVL+SEES+G IRSGKGERLD+ G CRLVGVA VDPIDDL LNSFLSLPTECIA LNAI
Sbjct: 181 KTVLSSEESRGIIRSGKGERLDDDGNCRLVGVATVDPIDDLFLNSFLSLPTECIANLNAI 240

Query: 570 ITFS 573
           ITFS
Sbjct: 241 ITFS 240

[Close]
BLAST of Cp4.1LG09g01190 vs. TAIR10
Match: AT4G38010.1 (AT4G38010.1 Pentatricopeptide repeat (PPR-like) superfamily protein)

HSP 1 Score: 308.5 bits (789), Expect = 8.4e-84
Identity = 153/316 (48.42%), Postives = 210/316 (66.46%), Query Frame = 1 

Query: 3   LLDSIKDCKNLRIFKKIHAQLVTSGLVYDDFVTNKVVEFFANFVEFGDYACDYLKQLNTR 62
           LL+ I  C +LR+FK+I  QL+T  L+ DD + NKVV F     +F  Y+   L  + + 
Sbjct: 9   LLELISRCSSLRVFKQIQTQLITRDLLRDDLIINKVVTFLGKSADFASYSSVILHSIRSV 68

Query: 63  LGSFPFNSLINGYAGGEFPQMAVSVYRRMARDGFVPDLFTFPVLFKACSNFSGSREGRQV 122
           L SF +N+L++ YA  + P++ +  Y+    +GF PD+FTFP +FKAC  FSG REG+Q+
Sbjct: 69  LSSFSYNTLLSSYAVCDKPRVTIFAYKTFVSNGFSPDMFTFPPVFKACGKFSGIREGKQI 128

Query: 123 HGVVVKLGILSDIFVQNSLVCCYGACEDFSCAGKVFDEMLVRDVVSWNSLISGFMKAGRF 182
           HG+V K+G   DI+VQNSLV  YG C +   A KVF EM VRDVVSW  +I+GF + G +
Sbjct: 129 HGIVTKMGFYDDIYVQNSLVHFYGVCGESRNACKVFGEMPVRDVVSWTGIITGFTRTGLY 188

Query: 183 DDAISLFFRMDVEPSVATLVSVLAACARKGDLYMGKGIHGMIQRRFKL-DLVLGNAMLDM 242
            +A+  F +MDVEP++AT V VL +  R G L +GKGIHG+I +R  L  L  GNA++DM
Sbjct: 189 KEALDTFSKMDVEPNLATYVCVLVSSGRVGCLSLGKGIHGLILKRASLISLETGNALIDM 248

Query: 243 YAKNGCLYEAKNIFDELPTRDIVSWTIMITGLVQSNHPKESLELFWMMR-NLGISPDGII 302
           Y K   L +A  +F EL  +D VSW  MI+GLV     KE+++LF +M+ + GI PDG I
Sbjct: 249 YVKCEQLSDAMRVFGELEKKDKVSWNSMISGLVHCERSKEAIDLFSLMQTSSGIKPDGHI 308

Query: 303 LTSVLSACASLGTLEN 317
           LTSVLSACASLG +++
Sbjct: 309 LTSVLSACASLGAVDH 324

[Close]
BLAST of Cp4.1LG09g01190 vs. TAIR10
Match: AT5G62140.1 (AT5G62140.1 unknown protein)

HSP 1 Score: 234.2 bits (596), Expect = 2.0e-61
Identity = 130/213 (61.03%), Postives = 159/213 (74.65%), Query Frame = 1 

Query: 367 SQNQETPTISTAKTPQ---TQIPKSNFSTVNFKSLTACKLGISRYPDFEYNAEGGTGTGS 426
           SQNQ    IS +  P+   TQ+P + +S V+FK++   KLGISRYPDFEY+  GG+G G+
Sbjct: 27  SQNQ-IKLISNSLNPKPNTTQLPNTLYS-VSFKTIGTGKLGISRYPDFEYSPLGGSGAGT 86

Query: 427 AKIDGD---GGSGEVSVSFDVGTLYIPPLTTQTTKFFGLPLPPFLKIDIVPELFHGNINQ 486
           AK   D     + E+SV F+V TLYIP LT+QTTKF G PLPPFLKIDI PE+F G INQ
Sbjct: 87  AKKIDDKNRASNSELSVCFNVATLYIPSLTSQTTKFLGFPLPPFLKIDISPEIFQGTINQ 146

Query: 487 ESGKIELEFKAKFLFSV-GNVYKAPPLLVETVLTSEESKGSIRSGKGERLDEKGKCRLVG 546
           ESGK+ELEF AKF F+  G +Y+AP L+V TVLT+EES G  + GKGERLDE+GKCRLVG
Sbjct: 147 ESGKVELEFMAKFFFTAGGGIYRAPALVVRTVLTTEESIGENKRGKGERLDEEGKCRLVG 206

Query: 547 VAIVDPIDDLLLNSFLSLPTECIAKLNAIITFS 573
           VA V+ IDDL +N+FLSLP EC+A L AII+ S
Sbjct: 207 VAKVETIDDLFMNTFLSLPAECLADLQAIISVS 237

[Close]
BLAST of Cp4.1LG09g01190 vs. TAIR10
Match: AT2G34400.1 (AT2G34400.1 Pentatricopeptide repeat (PPR-like) superfamily protein)

HSP 1 Score: 203.4 bits (516), Expect = 3.8e-52
Identity = 114/315 (36.19%), Postives = 174/315 (55.24%), Query Frame = 1 

Query: 7   IKDCKNLRIFKKIHAQLVTSGLVYDDFVTNKVVEFFANFVEFGDYA-CDYLKQLNTRLGS 66
           +K C ++   ++I AQ++   +   +F+  K VE        GD+    +L  +      
Sbjct: 44  LKKCISVNQLRQIQAQMLLHSVEKPNFLIPKAVEL-------GDFNYSSFLFSVTEEPNH 103

Query: 67  FPFNSLINGYAGG-EFPQMAVSVYRRMARDGFVPDLFTFPVLFKACSNFSGSREGRQVHG 126
           + FN +I G        + A+S+YRRM   G  PD FT+  +F AC+       GR VH 
Sbjct: 104 YSFNYMIRGLTNTWNDHEAALSLYRRMKFSGLKPDKFTYNFVFIACAKLEEIGVGRSVHS 163

Query: 127 VVVKLGILSDIFVQNSLVCCYGACEDFSCAGKVFDEMLVRDVVSWNSLISGFMKAGRFDD 186
            + K+G+  D+ + +SL+  Y  C     A K+FDE+  RD VSWNS+ISG+ +AG   D
Sbjct: 164 SLFKVGLERDVHINHSLIMMYAKCGQVGYARKLFDEITERDTVSWNSMISGYSEAGYAKD 223

Query: 187 AISLFFRMD---VEPSVATLVSVLAACARKGDLYMGKGIHGM-IQRRFKLDLVLGNAMLD 246
           A+ LF +M+    EP   TLVS+L AC+  GDL  G+ +  M I ++  L   LG+ ++ 
Sbjct: 224 AMDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITKKIGLSTFLGSKLIS 283

Query: 247 MYAKNGCLYEAKNIFDELPTRDIVSWTIMITGLVQSNHPKESLELFWMMRNLGISPDGII 306
           MY K G L  A+ +F+++  +D V+WT MIT   Q+    E+ +LF+ M   G+SPD   
Sbjct: 284 MYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGT 343

Query: 307 LTSVLSACASLGTLE 316
           L++VLSAC S+G LE
Sbjct: 344 LSTVLSACGSVGALE 351

[Close]
BLAST of Cp4.1LG09g01190 vs. TAIR10
Match: AT5G66520.1 (AT5G66520.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 201.1 bits (510), Expect = 1.9e-51
Identity = 110/352 (31.25%), Postives = 183/352 (51.99%), Query Frame = 1 

Query: 4   LDSIKDCKNLRIFKKIHAQLVTSGLVYDDFVTNKVVEFF-----ANFVEFGDYACDYLKQ 63
           +  ++ C      K+IHA+++ +GL+ D +   K + F      ++F+ +     D   +
Sbjct: 18  MSCLQRCSKQEELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDR 77

Query: 64  LNTRLGSFPFNSLINGYAGGEFPQMAVSVYRRMARDGFVPDLFTFPVLFKACSNFSGSRE 123
            +T    F +N +I G++  + P+ ++ +Y+RM       + +TFP L KACSN S   E
Sbjct: 78  PDT----FLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEE 137

Query: 124 GRQVHGVVVKLGILSDIFVQNSLVCCYGACEDFSCAGKVFDEMLVRDVVSWNSLISGFMK 183
             Q+H  + KLG  +D++  NSL+  Y    +F  A  +FD +   D VSWNS+I G++K
Sbjct: 138 TTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVK 197

Query: 184 AGRFDDAISLFFRM----------------------------------DVEPSVATLVSV 243
           AG+ D A++LF +M                                  DVEP   +L + 
Sbjct: 198 AGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANA 257

Query: 244 LAACARKGDLYMGKGIHGMIQR-RFKLDLVLGNAMLDMYAKNGCLYEAKNIFDELPTRDI 303
           L+ACA+ G L  GK IH  + + R ++D VLG  ++DMYAK G + EA  +F  +  + +
Sbjct: 258 LSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSV 317

Query: 304 VSWTIMITGLVQSNHPKESLELFWMMRNLGISPDGIILTSVLSACASLGTLE 316
            +WT +I+G     H +E++  F  M+ +GI P+ I  T+VL+AC+  G +E
Sbjct: 318 QAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVE 365

[Close]
BLAST of Cp4.1LG09g01190 vs. TAIR10
Match: AT1G08070.1 (AT1G08070.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 196.8 bits (499), Expect = 3.6e-50
Identity = 113/349 (32.38%), Postives = 187/349 (53.58%), Query Frame = 1 

Query: 4   LDSIKDCKNLRIFKKIHAQLVTSGLVYDDFVTNKVVEF--FANFVEFGDYACDYLKQLNT 63
           L  + +CK L+  + IHAQ++  GL   ++  +K++EF   +   E   YA    K +  
Sbjct: 37  LSLLHNCKTLQSLRIIHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQE 96

Query: 64  RLGSFPFNSLINGYAGGEFPQMAVSVYRRMARDGFVPDLFTFPVLFKACSNFSGSREGRQ 123
                 +N++  G+A    P  A+ +Y  M   G +P+ +TFP + K+C+     +EG+Q
Sbjct: 97  P-NLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQ 156

Query: 124 VHGVVVKLGILSDIFVQNSLVCCY---GACED---------------------------- 183
           +HG V+KLG   D++V  SL+  Y   G  ED                            
Sbjct: 157 IHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGY 216

Query: 184 FSCAGKVFDEMLVRDVVSWNSLISGFMKAGRFDDAISLF---FRMDVEPSVATLVSVLAA 243
              A K+FDE+ V+DVVSWN++ISG+ + G + +A+ LF    + +V P  +T+V+V++A
Sbjct: 217 IENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSA 276

Query: 244 CARKGDLYMGKGIHGMI-QRRFKLDLVLGNAMLDMYAKNGCLYEAKNIFDELPTRDIVSW 303
           CA+ G + +G+ +H  I    F  +L + NA++D+Y+K G L  A  +F+ LP +D++SW
Sbjct: 277 CAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISW 336

Query: 304 TIMITGLVQSNHPKESLELFWMMRNLGISPDGIILTSVLSACASLGTLE 316
             +I G    N  KE+L LF  M   G +P+ + + S+L ACA LG ++
Sbjct: 337 NTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAID 384

[Close]
BLAST of Cp4.1LG09g01190 vs. NCBI nr
Match: gi|700205501|gb|KGN60620.1| (hypothetical protein Csa_2G004700 [Cucumis sativus])

HSP 1 Score: 572.0 bits (1473), Expect = 1.2e-159
Identity = 275/313 (87.86%), Postives = 296/313 (94.57%), Query Frame = 1 

Query: 3   LLDSIKDCKNLRIFKKIHAQLVTSGLVYDDFVTNKVVEFFANFVEFGDYACDYLKQLNTR 62
           LLDSIKDCKNLRIF++IHAQLVTSGLVYDDFVT+KV+EFFANFVE+GDYACDYL+Q NTR
Sbjct: 8   LLDSIKDCKNLRIFRQIHAQLVTSGLVYDDFVTSKVMEFFANFVEYGDYACDYLEQGNTR 67

Query: 63  LGSFPFNSLINGYAGGEFPQMAVSVYRRMARDGFVPDLFTFPVLFKACSNFSGSREGRQV 122
           LGSFPFNSLINGY GGEFPQMAVSVYRRM RDGFVPD+FTFPVL KACSNFSGSREGRQV
Sbjct: 68  LGSFPFNSLINGYVGGEFPQMAVSVYRRMVRDGFVPDMFTFPVLLKACSNFSGSREGRQV 127

Query: 123 HGVVVKLGILSDIFVQNSLVCCYGACEDFSCAGKVFDEMLVRDVVSWNSLISGFMKAGRF 182
           HGVVVKLG+L+D +VQNSL+ CYGAC DFSCAGKVFDEMLVRDVVSWNSLISGFMKAG F
Sbjct: 128 HGVVVKLGLLADHYVQNSLIRCYGACGDFSCAGKVFDEMLVRDVVSWNSLISGFMKAGHF 187

Query: 183 DDAISLFFRMDVEPSVATLVSVLAACARKGDLYMGKGIHGMIQRRFKLDLVLGNAMLDMY 242
           D+AIS+FFRMDVEPS+ TLVSVLAACAR GDL  GKGIHG+I+RRFK++LVLGNAMLDMY
Sbjct: 188 DEAISVFFRMDVEPSMTTLVSVLAACARNGDLCTGKGIHGVIERRFKVNLVLGNAMLDMY 247

Query: 243 AKNGCLYEAKNIFDELPTRDIVSWTIMITGLVQSNHPKESLELFWMMRNLGISPDGIILT 302
            KNGC YEAKNIFDELPTRDIVSWTIMITGLVQS+HPK+SLELF MMR LGISPD IILT
Sbjct: 248 VKNGCFYEAKNIFDELPTRDIVSWTIMITGLVQSDHPKQSLELFSMMRTLGISPDAIILT 307

Query: 303 SVLSACASLGTLE 316
           SVLSACASLGTL+
Sbjct: 308 SVLSACASLGTLD 320

[Close]
BLAST of Cp4.1LG09g01190 vs. NCBI nr
Match: gi|659071137|ref|XP_008458315.1| (PREDICTED: pentatricopeptide repeat-containing protein At4g38010 isoform X1 [Cucumis melo])

HSP 1 Score: 566.2 bits (1458), Expect = 6.4e-158
Identity = 271/313 (86.58%), Postives = 295/313 (94.25%), Query Frame = 1 

Query: 3   LLDSIKDCKNLRIFKKIHAQLVTSGLVYDDFVTNKVVEFFANFVEFGDYACDYLKQLNTR 62
           LLDSIKDCKNLRIF++IHAQLVTSGLVYDDFVT+KV+EFFANFVE+GDYACDYL+Q NTR
Sbjct: 8   LLDSIKDCKNLRIFRQIHAQLVTSGLVYDDFVTSKVMEFFANFVEYGDYACDYLEQGNTR 67

Query: 63  LGSFPFNSLINGYAGGEFPQMAVSVYRRMARDGFVPDLFTFPVLFKACSNFSGSREGRQV 122
           LGSFPFNSLINGY GGEFPQ AVSVYRRM RDGFVPD+FTFPVL KACSNFSGSREGRQV
Sbjct: 68  LGSFPFNSLINGYVGGEFPQTAVSVYRRMVRDGFVPDMFTFPVLLKACSNFSGSREGRQV 127

Query: 123 HGVVVKLGILSDIFVQNSLVCCYGACEDFSCAGKVFDEMLVRDVVSWNSLISGFMKAGRF 182
           HGVVVKLG+L+D++VQNSL+ CYGAC D SCAGKVFDEM+VRDVVSWNSLISGFMKAG F
Sbjct: 128 HGVVVKLGLLADLYVQNSLIRCYGACGDLSCAGKVFDEMVVRDVVSWNSLISGFMKAGHF 187

Query: 183 DDAISLFFRMDVEPSVATLVSVLAACARKGDLYMGKGIHGMIQRRFKLDLVLGNAMLDMY 242
           D+AIS+FFRMDVEPS+ATLVSVLAACAR G+L  GKGIHG+I+RRFK++LVLGNAMLDMY
Sbjct: 188 DEAISVFFRMDVEPSIATLVSVLAACARNGNLCTGKGIHGVIERRFKVNLVLGNAMLDMY 247

Query: 243 AKNGCLYEAKNIFDELPTRDIVSWTIMITGLVQSNHPKESLELFWMMRNLGISPDGIILT 302
            KNGC YEAK +FDELPTRDIVSWTIMITGLVQS+HPKESLELF MMR LGISPD IILT
Sbjct: 248 VKNGCFYEAKKMFDELPTRDIVSWTIMITGLVQSDHPKESLELFSMMRTLGISPDAIILT 307

Query: 303 SVLSACASLGTLE 316
           SVLSACASLGTL+
Sbjct: 308 SVLSACASLGTLD 320

[Close]
BLAST of Cp4.1LG09g01190 vs. NCBI nr
Match: gi|743856958|ref|XP_011030049.1| (PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At4g38010-like [Populus euphratica])

HSP 1 Score: 395.6 bits (1015), Expect = 1.5e-106
Identity = 189/314 (60.19%), Postives = 243/314 (77.39%), Query Frame = 1 

Query: 3   LLDSIKDCKNLRIFKKIHAQLVTSGLVYDDFVTNKVVEFFANFVEFGDYACDYLKQLNTR 62
           LLDSI+ CK L  FKKIHAQL+TSG+V +DFV N+VVEFFA    F DYACD+L + + +
Sbjct: 12  LLDSIQRCKKLITFKKIHAQLITSGVVSNDFVVNRVVEFFAKGPNFVDYACDFLNEYDWK 71

Query: 63  LGSFPFNSLINGYAGGEFPQMAVSVYRRMARDGFVPDLFTFPVLFKACSNFSGSREGRQV 122
           + SFPFN+L++GYA G+ P+ A  VYRR+ +DGF+PD+FTFP + K+C+ F G  EGRQV
Sbjct: 72  VSSFPFNALVSGYAIGDRPKTAFLVYRRIVKDGFLPDMFTFPAVLKSCAKFVGIGEGRQV 131

Query: 123 HGVVVKLGILSDIFVQNSLVCCYGACEDFSCAGKVFDEMLVRDVVSWNSLISGFMKAGRF 182
           HGV++K+G + +I+V+NSLV  Y  C+ F  A ++FDEMLVRDVVSW  +ISG+++AG F
Sbjct: 132 HGVIIKMGFVCNIYVENSLVHFYSVCKSFGDASRLFDEMLVRDVVSWTGVISGYVRAGLF 191

Query: 183 DDAISLFFRMDVEPSVATLVSVLAACARKGDLYMGKGIHGM-IQRRFKLDLVLGNAMLDM 242
           D+A+ LF RMDVEP+ AT VSVL AC RKG L +GKGIHG+  +  F + L + NA++DM
Sbjct: 192 DEAVVLFLRMDVEPNAATFVSVLVACGRKGYLSVGKGIHGLSFKSAFGVGLEVSNALMDM 251

Query: 243 YAKNGCLYEAKNIFDELPTRDIVSWTIMITGLVQSNHPKESLELFWMMRNLGISPDGIIL 302
           Y K GCL  AK +FDEL  +DIVSWT +I+GLVQ N PKE+LELF  M++ GI PDGIIL
Sbjct: 252 YVKCGCLPGAKQVFDELAEKDIVSWTSIISGLVQCNCPKEALELFQDMQSSGIEPDGIIL 311

Query: 303 TSVLSACASLGTLE 316
           TSVLSACASLG L+
Sbjct: 312 TSVLSACASLGALD 325

[Close]
BLAST of Cp4.1LG09g01190 vs. NCBI nr
Match: gi|566198363|ref|XP_002318245.2| (hypothetical protein POPTR_0012s13730g, partial [Populus trichocarpa])

HSP 1 Score: 395.6 bits (1015), Expect = 1.5e-106
Identity = 189/314 (60.19%), Postives = 242/314 (77.07%), Query Frame = 1 

Query: 3   LLDSIKDCKNLRIFKKIHAQLVTSGLVYDDFVTNKVVEFFANFVEFGDYACDYLKQLNTR 62
           LLDSI+ CK L  FKKIHAQL+TSG+V +DFV N+VVEFFA    F DYACD+L + + +
Sbjct: 12  LLDSIQRCKKLTTFKKIHAQLITSGVVSNDFVVNRVVEFFAKGPNFVDYACDFLSEYDWK 71

Query: 63  LGSFPFNSLINGYAGGEFPQMAVSVYRRMARDGFVPDLFTFPVLFKACSNFSGSREGRQV 122
           + SFPFN+L++GYA G+ P+ A  VYRR+ +DGF+PD+FTFP + K+C+ F G  EGRQV
Sbjct: 72  VSSFPFNALVSGYAIGDRPKTAFLVYRRIVKDGFLPDMFTFPAVLKSCAKFVGIGEGRQV 131

Query: 123 HGVVVKLGILSDIFVQNSLVCCYGACEDFSCAGKVFDEMLVRDVVSWNSLISGFMKAGRF 182
           HGV++K+G + +I+V+NSLV  Y  C+ F  A +VFDEMLVRDVVSW  +ISG+++AG F
Sbjct: 132 HGVIIKMGFVCNIYVENSLVHFYSVCKRFGDASRVFDEMLVRDVVSWTGVISGYVRAGLF 191

Query: 183 DDAISLFFRMDVEPSVATLVSVLAACARKGDLYMGKGIHGM-IQRRFKLDLVLGNAMLDM 242
           D+A+ LF RMDVEP+ AT VSVL AC RKG L +GKGIHG+  +  F + L + NA++DM
Sbjct: 192 DEAVGLFLRMDVEPNAATFVSVLVACGRKGYLSVGKGIHGLSFKSAFGVGLEVSNALMDM 251

Query: 243 YAKNGCLYEAKNIFDELPTRDIVSWTIMITGLVQSNHPKESLELFWMMRNLGISPDGIIL 302
           Y K GCL  AK +FDEL  +DIVSWT +I+GLVQ N PKE+LELF  M++ GI PDGIIL
Sbjct: 252 YVKCGCLPGAKQVFDELAEKDIVSWTSIISGLVQCNCPKEALELFQDMQSSGIEPDGIIL 311

Query: 303 TSVLSACASLGTLE 316
           TSVLSACA LG L+
Sbjct: 312 TSVLSACARLGALD 325

[Close]
BLAST of Cp4.1LG09g01190 vs. NCBI nr
Match: gi|1009122562|ref|XP_015878068.1| (PREDICTED: pentatricopeptide repeat-containing protein At4g38010 [Ziziphus jujuba])

HSP 1 Score: 392.1 bits (1006), Expect = 1.6e-105
Identity = 190/315 (60.32%), Postives = 237/315 (75.24%), Query Frame = 1 

Query: 3   LLDSIKDCKNLRIFKKIHAQLVTSGLVYDDFVTNKVVEFFANFVEFGDYACDYLKQLNTR 62
           LL+SI+ C NL+ FK+IHAQL+T+GL+YD    N  VE+F   V   DYACDYLKQL+ R
Sbjct: 12  LLNSIRRCNNLKFFKQIHAQLLTTGLIYDSLFANYAVEYFGKSVGIFDYACDYLKQLDWR 71

Query: 63  LGSFPFNSLINGYAGGEFPQMAVSVYRRMARDGFVPDLFTFPVLFKACSNFSGSREGRQV 122
           L SFPFN LI+ YAGG  P+ AV   RR+ RDGFVPD+FTFP + K+C+ F G  EGRQV
Sbjct: 72  LSSFPFNVLISRYAGGNTPREAVWACRRLRRDGFVPDMFTFPAVLKSCTKFLGIGEGRQV 131

Query: 123 HGVVVKLGILSDIFVQNSLVCCYGACEDFSCAGKVFDEMLVRDVVSWNSLISGFMKAGRF 182
           HGVV+ +G  SD++VQNSL+  YG C D   A +VFD+MLVRDVVSW  LISGF++ G F
Sbjct: 132 HGVVITMGFCSDVYVQNSLLHFYGVCGDCDGASRVFDDMLVRDVVSWTGLISGFVRVGLF 191

Query: 183 DDAISLFFRMDVEPSVATLVSVLAACARKGDLYMGKGIHGMIQRRFKLDLV-LGNAMLDM 242
           ++A++LF +MDVEP++AT V+VL A  R G L +GK  HG+I +R    L+ +GNA++DM
Sbjct: 192 EEAVALFLKMDVEPNIATFVTVLVASGRIGCLSVGKATHGLILKRAMGSLLAVGNAIMDM 251

Query: 243 YAKNGCLYEAKNIFDELPTRDIVSWTIMITGLVQSNHPKESLELFWMMRNLGISPDGIIL 302
           Y K   L+EAK +F ELP +DIVSWT MI+GLVQ  HPKESLELFW M+N GI PD IIL
Sbjct: 252 YVKCEHLFEAKQVFYELPEKDIVSWTCMISGLVQCKHPKESLELFWNMQNSGIEPDEIIL 311

Query: 303 TSVLSACASLGTLEN 317
           TSVLSACASLG L++
Sbjct: 312 TSVLSACASLGALDH 326

The following BLAST results are available for this feature:
BLAST of Cp4.1LG09g01190 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PP355_ARATH1.5e-8248.42Pentatricopeptide repeat-containing protein At4g38010 OS=Arabidopsis thaliana GN... [more]
PP184_ARATH6.8e-5136.19Pentatricopeptide repeat-containing protein At2g34400 OS=Arabidopsis thaliana GN... [more]
PP449_ARATH3.4e-5031.25Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana GN... [more]
PPR21_ARATH6.3e-4932.38Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidop... [more]
PPR68_ARATH8.3e-4933.12Pentatricopeptide repeat-containing protein At1g31920 OS=Arabidopsis thaliana GN... [more]
BLAST of Cp4.1LG09g01190 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LF19_CUCSA8.1e-16087.86Uncharacterized protein OS=Cucumis sativus GN=Csa_2G004700 PE=4 SV=1[more]
B9I4E0_POPTR1.0e-10660.19Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0012s13730g P... [more]
W9S388_9ROSA2.0e-10260.00Uncharacterized protein OS=Morus notabilis GN=L484_005358 PE=4 SV=1[more]
F6HP80_VITVI8.5e-10157.64Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0100g00190 PE=4 SV=... [more]
A0A0A0L5S5_CUCSA6.1e-9975.82Uncharacterized protein OS=Cucumis sativus GN=Csa_3G180240 PE=4 SV=1[more]
BLAST of Cp4.1LG09g01190 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G38010.18.4e-8448.42 Pentatricopeptide repeat (PPR-like) superfamily protein[more]
AT5G62140.12.0e-6161.03 unknown protein[more]
AT2G34400.13.8e-5236.19 Pentatricopeptide repeat (PPR-like) superfamily protein[more]
AT5G66520.11.9e-5131.25 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT1G08070.13.6e-5032.38 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
BLAST of Cp4.1LG09g01190 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700205501|gb|KGN60620.1|1.2e-15987.86hypothetical protein Csa_2G004700 [Cucumis sativus][more]
gi|659071137|ref|XP_008458315.1|6.4e-15886.58PREDICTED: pentatricopeptide repeat-containing protein At4g38010 isoform X1 [Cuc... [more]
gi|743856958|ref|XP_011030049.1|1.5e-10660.19PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At4g... [more]
gi|566198363|ref|XP_002318245.2|1.5e-10660.19hypothetical protein POPTR_0012s13730g, partial [Populus trichocarpa][more]
gi|1009122562|ref|XP_015878068.1|1.6e-10560.32PREDICTED: pentatricopeptide repeat-containing protein At4g38010 [Ziziphus jujub... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006508 proteolysis
cellular_component GO:0005575 cellular_component
cellular_component GO:0009507 chloroplast
molecular_function GO:0003674 molecular_function
molecular_function GO:0005524 ATP binding
molecular_function GO:0008233 peptidase activity
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG09g01190.1Cp4.1LG09g01190.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 264..294
score: 1.4E-5coord: 236..261
score: 8.
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 68..111
score: 3.1E-7coord: 165..209
score: 5.
IPR002885Pentatricopeptide repeatTIGRFAMsTIGR00756TIGR00756coord: 68..99
score: 2.8E-5coord: 264..297
score: 8.6E-5coord: 167..192
score: 4.
IPR002885Pentatricopeptide repeatPROFILEPS51375PPRcoord: 64..98
score: 9.986coord: 99..133
score: 5.996coord: 134..164
score: 6.884coord: 262..296
score: 11.323coord: 165..199
score: 10.731coord: 231..261
score: 7
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 11..315
score: 4.3E
NoneNo IPR availablePANTHERPTHR24015:SF266SUBFAMILY NOT NAMEDcoord: 11..315
score: 4.3E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG09g01190Cucsa.251050Cucumber (Gy14) v1cgycpeB0668
Cp4.1LG09g01190CmaCh18G012160Cucurbita maxima (Rimu)cmacpeB415
Cp4.1LG09g01190CmoCh18G012370Cucurbita moschata (Rifu)cmocpeB376
Cp4.1LG09g01190Cla006218Watermelon (97103) v1cpewmB032
Cp4.1LG09g01190Csa3G180240Cucumber (Chinese Long) v2cpecuB039
Cp4.1LG09g01190MELO3C006867Melon (DHL92) v3.5.1cpemeB043
Cp4.1LG09g01190ClCG05G007760Watermelon (Charleston Gray)cpewcgB046
Cp4.1LG09g01190CSPI03G16530Wild cucumber (PI 183967)cpecpiB034
Cp4.1LG09g01190Lsi05G012680Bottle gourd (USVL1VR-Ls)cpelsiB035
Cp4.1LG09g01190MELO3C006867.2Melon (DHL92) v3.6.1cpemedB050
Cp4.1LG09g01190CsaV3_3G016740Cucumber (Chinese Long) v3cpecucB0039
Cp4.1LG09g01190CsGy3G016640Cucumber (Gy14) v2cgybcpeB287
Cp4.1LG09g01190Carg26811Silver-seed gourdcarcpeB0008
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG09g01190Cucumber (Gy14) v2cgybcpeB584
Cp4.1LG09g01190Melon (DHL92) v3.6.1cpemedB024
Cp4.1LG09g01190Silver-seed gourdcarcpeB0994
Cp4.1LG09g01190Silver-seed gourdcarcpeB1214
Cp4.1LG09g01190Silver-seed gourdcarcpeB1267
Cp4.1LG09g01190Cucumber (Chinese Long) v3cpecucB0045
Cp4.1LG09g01190Wax gourdcpewgoB0025
Cp4.1LG09g01190Cucurbita pepo (Zucchini)cpecpeB023
Cp4.1LG09g01190Cucurbita pepo (Zucchini)cpecpeB057
Cp4.1LG09g01190Cucurbita pepo (Zucchini)cpecpeB058
Cp4.1LG09g01190Cucumber (Gy14) v1cgycpeB0788
Cp4.1LG09g01190Cucurbita maxima (Rimu)cmacpeB339
Cp4.1LG09g01190Cucurbita moschata (Rifu)cmocpeB303
Cp4.1LG09g01190Cucurbita moschata (Rifu)cmocpeB546
Cp4.1LG09g01190Wild cucumber (PI 183967)cpecpiB040
Cp4.1LG09g01190Cucumber (Chinese Long) v2cpecuB046
Cp4.1LG09g01190Watermelon (Charleston Gray)cpewcgB023
Cp4.1LG09g01190Watermelon (97103) v1cpewmB036
Cp4.1LG09g01190Melon (DHL92) v3.5.1cpemeB020