Cp4.1LG09g01100 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG09g01100
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Transcription factor, TCP
Location	Cp4.1LG09 : 675248 .. 675676 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCTTACGGCGCCGGTATCGTTCCATTCTGGGCAAACGCCGGTGGCGTTACAGAGCAGTTCTTCATGGTTCCGGGAACGTCGAGCAACCAACAGCCGCAGCTCTGGGCGGTGCCGGCGAGACCCATATCTAATTTCGTGTCGTCAATAAATCCCAGTTTGCAATTCGGGGGTGTAGTGCCAGTTCTAGCCAGAGGTGTAACAAATTGTTCCAGTGGAATGGGAAGTGGTTCTTCGCCGGCTACCGCTTCTCAGAGTTCGATTCCGGTGACGATGAGTGCTCCGTCAACGTCCAGTGCGGCGTCTTCAATCGGTACCACTCGAATGTTGAGAGATTTCTCAATGGAAATTCACGAGAAGAAGGAACTGGAATTAATGGGTCGGGCAAAGTCTGCAAATTCTGAAGCGCCATGTTCAAAACCTTGA

mRNA sequence

ATGGCAGCTTACGGCGCCGGTATCGTTCCATTCTGGGCAAACGCCGGTGGCGTTACAGAGCAGTTCTTCATGGTTCCGGGAACGTCGAGCAACCAACAGCCGCAGCTCTGGGCGGTGCCGGCGAGACCCATATCTAATTTCGTGTCGTCAATAAATCCCAGTTTGCAATTCGGGGGTGTAGTGCCAGTTCTAGCCAGAGGTGTAACAAATTGTTCCAGTGGAATGGGAAGTGGTTCTTCGCCGGCTACCGCTTCTCAGAGTTCGATTCCGGTGACGATGAGTGCTCCGTCAACGTCCAGTGCGGCGTCTTCAATCGGTACCACTCGAATGTTGAGAGATTTCTCAATGGAAATTCACGAGAAGAAGGAACTGGAATTAATGGGTCGGGCAAAGTCTGCAAATTCTGAAGCGCCATGTTCAAAACCTTGA

Coding sequence (CDS)

ATGGCAGCTTACGGCGCCGGTATCGTTCCATTCTGGGCAAACGCCGGTGGCGTTACAGAGCAGTTCTTCATGGTTCCGGGAACGTCGAGCAACCAACAGCCGCAGCTCTGGGCGGTGCCGGCGAGACCCATATCTAATTTCGTGTCGTCAATAAATCCCAGTTTGCAATTCGGGGGTGTAGTGCCAGTTCTAGCCAGAGGTGTAACAAATTGTTCCAGTGGAATGGGAAGTGGTTCTTCGCCGGCTACCGCTTCTCAGAGTTCGATTCCGGTGACGATGAGTGCTCCGTCAACGTCCAGTGCGGCGTCTTCAATCGGTACCACTCGAATGTTGAGAGATTTCTCAATGGAAATTCACGAGAAGAAGGAACTGGAATTAATGGGTCGGGCAAAGTCTGCAAATTCTGAAGCGCCATGTTCAAAACCTTGA

Protein sequence

MAAYGAGIVPFWANAGGVTEQFFMVPGTSSNQQPQLWAVPARPISNFVSSINPSLQFGGVVPVLARGVTNCSSGMGSGSSPATASQSSIPVTMSAPSTSSAASSIGTTRMLRDFSMEIHEKKELELMGRAKSANSEAPCSKP

Homology

[Close]

BLAST of Cp4.1LG09g01100 vs. TrEMBL
Match: A0A0A0L8J7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G179190 PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 1.5e-46
Identity = 102/142 (71.83%), Postives = 116/142 (81.69%), Query Frame = 1


Query: 1   MAAYGAGIVPFWANAGGVTEQFFMVPGTSSNQQPQLWAVPARPISNFVSSINPSLQFGGV 60
           MAAYGAG+VPFW +AGGVTE FFMVPGTS+N QPQLWAVPARP+SN VSS+NP LQFGGV
Sbjct: 206 MAAYGAGLVPFWGSAGGVTEPFFMVPGTSNNHQPQLWAVPARPLSNLVSSMNPGLQFGGV 265

Query: 61  VPVLARGVTNCSSGMGSGSSPATASQSSIPVTMSAPSTSSAASSIGTTRMLRDFSMEIHE 120
           VPVL R V+N SSG+ SGSSPA  S S IP T+SAP     AS+ G+T+MLRDFS+EI+E
Sbjct: 266 VPVLTRAVSNGSSGLESGSSPAMVSASLIPGTVSAP-----ASTSGSTQMLRDFSLEIYE 325

Query: 121 KKELELMGRAKSANSEAPCSKP 143
           KKELE MGR   A S+ PCSKP
Sbjct: 326 KKELEFMGRRSPAKSQTPCSKP 342

[Close]

BLAST of Cp4.1LG09g01100 vs. TrEMBL
Match: M5X1N8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010645mg PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 7.4e-14
Identity = 67/165 (40.61%), Postives = 89/165 (53.94%), Query Frame = 1


Query: 7   GIVPFW-ANAGGVTEQFFMVP--GTSSNQQPQLWAVPA------------RPISNFVSSI 66
           G+VP W   A G    FFM P  G  +  QPQLWAVPA            RPISNF+S+ 
Sbjct: 81  GLVPMWQVGATGAAGPFFMFPNNGAMNTNQPQLWAVPAADAATPIFNFQARPISNFLSAF 140

Query: 67  NPSLQF-GGVVPV------LARGVTN-----CSSGMGS--GSSPATASQSSIPVTMSAPS 126
            P +   GG V +      ++ G T+     CSS +G   GS+  T +  +   T S   
Sbjct: 141 QPGVHVVGGDVQLQASSGSISSGATSGSGGSCSSSLGPSLGSASGTRANKNTISTGSGTG 200

Query: 127 TSSAASSIGTTRMLRDFSMEIHEKKELELMGRAKSANSEAPCSKP 143
            S+AA+   TT+MLRDFS+EI++K+EL+ MG    ANS+ P SKP
Sbjct: 201 ASAAAAGATTTQMLRDFSLEIYDKRELQFMG----ANSQTPYSKP 241

[Close]

BLAST of Cp4.1LG09g01100 vs. TrEMBL
Match: B9R9I7_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1497810 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.4e-12
Identity = 63/158 (39.87%), Postives = 87/158 (55.06%), Query Frame = 1


Query: 7   GIVPFWANAGGVTEQFFMVPGT----SSNQQPQLWAVPA----------RPISNFVSSIN 66
           G+VPFW     V  Q   + G      SNQQPQLWA+PA          RPISNFVS++ 
Sbjct: 235 GLVPFWPMGTFVLPQSAGLTGGVGVGGSNQQPQLWAIPANATPFFNVAARPISNFVSAMQ 294

Query: 67  PSLQFGGVVPVLARGVTNCSSGMGS-GSSPATASQSSIPVTMSAPSTSSAA--------S 126
           P +Q G  +        N S+ +GS G S A+ S SS P+   + STS++         S
Sbjct: 295 PGVQLGAGIGF------NVSNTIGSSGLSTASPSSSSSPMGSMSSSTSNSGGGGGGGNTS 354

Query: 127 SIGTTRMLRDFSMEIHEKKELELMGRAKSANSEAPCSK 142
           + G+ +MLRDFS+EI++KKEL+ +G+  S   +  CSK
Sbjct: 355 NSGSAQMLRDFSLEIYDKKELQFLGQPNS--QQTSCSK 384

[Close]

BLAST of Cp4.1LG09g01100 vs. TrEMBL
Match: A0A067JS29_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26175 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 7.0e-12
Identity = 65/151 (43.05%), Postives = 87/151 (57.62%), Query Frame = 1


Query: 7   GIVPFWANAGGVTEQFFMVP--GTSSNQQPQLWAVPA----------RPISNFVSSINPS 66
           G+VPFW          FM+P  G+ SNQ  QLWA+PA          RPIS+FVS++ P 
Sbjct: 201 GLVPFWPMGT------FMLPQSGSGSNQS-QLWAIPAAATPFFNVAARPISSFVSAMQPG 260

Query: 67  LQFGGVVPVLAR--GVTNCSSGMGSG-SSPATASQSSIPVTMSAPSTSSAASSIGTTRML 126
           +Q GGVV V     G    S+ +GSG SS    S SS   T +    S+  ++ GT +ML
Sbjct: 261 VQLGGVVGVGVGVGGSAGVSNSIGSGGSSSQMGSMSSSSGTNNTGGGSN--TNTGTAQML 320

Query: 127 RDFSMEIHEKKELELMGRAKSANSEAPCSKP 143
           RDFS+EI++KKEL+ +G   SA  ++P SKP
Sbjct: 321 RDFSLEIYDKKELQFLGH--SAAQQSPSSKP 340

[Close]

BLAST of Cp4.1LG09g01100 vs. TrEMBL
Match: M1C8W5_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400024254 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.3e-10
Identity = 59/147 (40.14%), Postives = 82/147 (55.78%), Query Frame = 1


Query: 5   GAGIVPFWANAGGVTEQFFMVP-GTSSNQQPQLWA-----VPARPISNFVSSINPSLQF- 64
           G G+VP  A  GG T  F+M+P GT++    QLWA     VP R ISNFVS++ P + + 
Sbjct: 221 GNGLVPTTAFTGGAT--FYMLPPGTNTTVGAQLWATPIFNVPGRTISNFVSAMQPGMGYA 280

Query: 65  -GGVVPVLARGVTNCSSGMGSGSSPATASQSSIPVTMSAPSTSSA-ASSIGTTRMLRDFS 124
            GGV  V A    + SS      S     +     +  APS+SS  +++  TT+MLRDFS
Sbjct: 281 AGGVSSVAAANEVHLSSSFCVSKSDGNGDKLGNVASAMAPSSSSTGSTTTSTTQMLRDFS 340

Query: 125 MEIHEKKELELM-GRAKSANSEAPCSK 142
           +EI++K+EL+ M G   S N +   SK
Sbjct: 341 LEIYDKRELQFMVGSGSSENDQTSSSK 365

[Close]

BLAST of Cp4.1LG09g01100 vs. NCBI nr
Match: gi|449465180|ref|XP_004150306.1| (PREDICTED: transcription factor TCP19 [Cucumis sativus])

HSP 1 Score: 193.7 bits (491), Expect = 2.1e-46
Identity = 102/142 (71.83%), Postives = 116/142 (81.69%), Query Frame = 1


Query: 1   MAAYGAGIVPFWANAGGVTEQFFMVPGTSSNQQPQLWAVPARPISNFVSSINPSLQFGGV 60
           MAAYGAG+VPFW +AGGVTE FFMVPGTS+N QPQLWAVPARP+SN VSS+NP LQFGGV
Sbjct: 206 MAAYGAGLVPFWGSAGGVTEPFFMVPGTSNNHQPQLWAVPARPLSNLVSSMNPGLQFGGV 265

Query: 61  VPVLARGVTNCSSGMGSGSSPATASQSSIPVTMSAPSTSSAASSIGTTRMLRDFSMEIHE 120
           VPVL R V+N SSG+ SGSSPA  S S IP T+SAP     AS+ G+T+MLRDFS+EI+E
Sbjct: 266 VPVLTRAVSNGSSGLESGSSPAMVSASLIPGTVSAP-----ASTSGSTQMLRDFSLEIYE 325

Query: 121 KKELELMGRAKSANSEAPCSKP 143
           KKELE MGR   A S+ PCSKP
Sbjct: 326 KKELEFMGRRSPAKSQTPCSKP 342

[Close]

BLAST of Cp4.1LG09g01100 vs. NCBI nr
Match: gi|659077340|ref|XP_008439154.1| (PREDICTED: transcription factor TCP19 [Cucumis melo])

HSP 1 Score: 193.4 bits (490), Expect = 2.8e-46
Identity = 102/142 (71.83%), Postives = 116/142 (81.69%), Query Frame = 1


Query: 1   MAAYGAGIVPFWANAGGVTEQFFMVPGTSSNQQPQLWAVPARPISNFVSSINPSLQFGGV 60
           MAAYGAG+VPFW +AGGVTE FFMVPGTS+N QPQLWAVPARP+SN VSS+NP LQFGGV
Sbjct: 210 MAAYGAGLVPFWGSAGGVTEPFFMVPGTSNNHQPQLWAVPARPLSNLVSSMNPGLQFGGV 269

Query: 61  VPVLARGVTNCSSGMGSGSSPATASQSSIPVTMSAPSTSSAASSIGTTRMLRDFSMEIHE 120
           VPVL R V+N SSG+ SGSSPA  S S IP T+SAP     AS+ G+T+MLRDFS+EI+E
Sbjct: 270 VPVLTRAVSNGSSGLESGSSPAMVSPSLIPGTVSAP-----ASTSGSTQMLRDFSLEIYE 329

Query: 121 KKELELMGRAKSANSEAPCSKP 143
           KKELE MGR   A S+ PCSKP
Sbjct: 330 KKELEFMGRPSPAKSKTPCSKP 346

[Close]

BLAST of Cp4.1LG09g01100 vs. NCBI nr
Match: gi|596001906|ref|XP_007218212.1| (hypothetical protein PRUPE_ppa010645mg [Prunus persica])

HSP 1 Score: 85.1 bits (209), Expect = 1.1e-13
Identity = 67/165 (40.61%), Postives = 89/165 (53.94%), Query Frame = 1


Query: 7   GIVPFW-ANAGGVTEQFFMVP--GTSSNQQPQLWAVPA------------RPISNFVSSI 66
           G+VP W   A G    FFM P  G  +  QPQLWAVPA            RPISNF+S+ 
Sbjct: 81  GLVPMWQVGATGAAGPFFMFPNNGAMNTNQPQLWAVPAADAATPIFNFQARPISNFLSAF 140

Query: 67  NPSLQF-GGVVPV------LARGVTN-----CSSGMGS--GSSPATASQSSIPVTMSAPS 126
            P +   GG V +      ++ G T+     CSS +G   GS+  T +  +   T S   
Sbjct: 141 QPGVHVVGGDVQLQASSGSISSGATSGSGGSCSSSLGPSLGSASGTRANKNTISTGSGTG 200

Query: 127 TSSAASSIGTTRMLRDFSMEIHEKKELELMGRAKSANSEAPCSKP 143
            S+AA+   TT+MLRDFS+EI++K+EL+ MG    ANS+ P SKP
Sbjct: 201 ASAAAAGATTTQMLRDFSLEIYDKRELQFMG----ANSQTPYSKP 241

[Close]

BLAST of Cp4.1LG09g01100 vs. NCBI nr
Match: gi|645257216|ref|XP_008234310.1| (PREDICTED: transcription factor TCP19 [Prunus mume])

HSP 1 Score: 80.9 bits (198), Expect = 2.0e-12
Identity = 68/167 (40.72%), Postives = 91/167 (54.49%), Query Frame = 1


Query: 7   GIVPFW-ANAGGVTEQFFMVP--GTSSNQQPQLWAVPA------------RPISNFVSSI 66
           G+VP W   A G    FFM P  G  +  QPQLWAVPA            RPISNF+S+ 
Sbjct: 220 GLVPMWQVGATGAAGPFFMFPNNGAVNPNQPQLWAVPAADAATPIFNFQARPISNFLSAF 279

Query: 67  NPSLQF-GGVVPV------LARGVTN-----CSSGMGS--GSSPATASQSSIPVTMSAP- 126
            P +   GG V +      ++ G T+     CSS +G   GS+  T +  +   T S   
Sbjct: 280 QPGVHVVGGDVQLQASSGSISSGATSGSGGSCSSSLGPSLGSASGTRANKNTISTGSGTG 339

Query: 127 -STSSAASSIGTTRMLRDFSMEIHEKKELELMGRAKSANSEAPCSKP 143
            S ++AA+S  TT+MLRDFS+EI++K+EL+ MG    ANS+ P SKP
Sbjct: 340 ASAAAAAASATTTQMLRDFSLEIYDKRELQFMG----ANSQTPYSKP 382

[Close]

BLAST of Cp4.1LG09g01100 vs. NCBI nr
Match: gi|255539595|ref|XP_002510862.1| (PREDICTED: transcription factor TCP19 [Ricinus communis])

HSP 1 Score: 80.1 bits (196), Expect = 3.4e-12
Identity = 63/158 (39.87%), Postives = 87/158 (55.06%), Query Frame = 1


Query: 7   GIVPFWANAGGVTEQFFMVPGT----SSNQQPQLWAVPA----------RPISNFVSSIN 66
           G+VPFW     V  Q   + G      SNQQPQLWA+PA          RPISNFVS++ 
Sbjct: 235 GLVPFWPMGTFVLPQSAGLTGGVGVGGSNQQPQLWAIPANATPFFNVAARPISNFVSAMQ 294

Query: 67  PSLQFGGVVPVLARGVTNCSSGMGS-GSSPATASQSSIPVTMSAPSTSSAA--------S 126
           P +Q G  +        N S+ +GS G S A+ S SS P+   + STS++         S
Sbjct: 295 PGVQLGAGIGF------NVSNTIGSSGLSTASPSSSSSPMGSMSSSTSNSGGGGGGGNTS 354

Query: 127 SIGTTRMLRDFSMEIHEKKELELMGRAKSANSEAPCSK 142
           + G+ +MLRDFS+EI++KKEL+ +G+  S   +  CSK
Sbjct: 355 NSGSAQMLRDFSLEIYDKKELQFLGQPNS--QQTSCSK 384

The following BLAST results are available for this feature:

BLAST of Cp4.1LG09g01100 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG09g01100 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L8J7_CUCSA	1.5e-46	71.83	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G179190 PE=4 SV=1	[more]
M5X1N8_PRUPE	7.4e-14	40.61	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010645mg PE=4 SV=1	[more]
B9R9I7_RICCO	2.4e-12	39.87	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1497810 PE=4 SV=1	[more]
A0A067JS29_JATCU	7.0e-12	43.05	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26175 PE=4 SV=1	[more]
M1C8W5_SOLTU	1.3e-10	40.14	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400024254 PE=4 SV=1	[more]

BLAST of Cp4.1LG09g01100 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG09g01100 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449465180\|ref\|XP_004150306.1\|	2.1e-46	71.83	PREDICTED: transcription factor TCP19 [Cucumis sativus]	[more]
gi\|659077340\|ref\|XP_008439154.1\|	2.8e-46	71.83	PREDICTED: transcription factor TCP19 [Cucumis melo]	[more]
gi\|596001906\|ref\|XP_007218212.1\|	1.1e-13	40.61	hypothetical protein PRUPE_ppa010645mg [Prunus persica]	[more]
gi\|645257216\|ref\|XP_008234310.1\|	2.0e-12	40.72	PREDICTED: transcription factor TCP19 [Prunus mume]	[more]
gi\|255539595\|ref\|XP_002510862.1\|	3.4e-12	39.87	PREDICTED: transcription factor TCP19 [Ricinus communis]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG09g01100.1	Cp4.1LG09g01100.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG09g01100	Cucsa.251110	Cucumber (Gy14) v1	cgycpeB0668
Cp4.1LG09g01100	CmaCh16G001580	Cucurbita maxima (Rimu)	cmacpeB339
Cp4.1LG09g01100	CmaCh18G012150	Cucurbita maxima (Rimu)	cmacpeB415
Cp4.1LG09g01100	CmoCh16G001620	Cucurbita moschata (Rifu)	cmocpeB303
Cp4.1LG09g01100	Cla006219	Watermelon (97103) v1	cpewmB032
Cp4.1LG09g01100	Csa3G179190	Cucumber (Chinese Long) v2	cpecuB039
Cp4.1LG09g01100	MELO3C006863	Melon (DHL92) v3.5.1	cpemeB043
Cp4.1LG09g01100	ClCG05G007740	Watermelon (Charleston Gray)	cpewcgB046
Cp4.1LG09g01100	CSPI03G16480	Wild cucumber (PI 183967)	cpecpiB034
Cp4.1LG09g01100	Lsi05G012740	Bottle gourd (USVL1VR-Ls)	cpelsiB035
Cp4.1LG09g01100	MELO3C006863.2	Melon (DHL92) v3.6.1	cpemedB050
Cp4.1LG09g01100	CsaV3_3G016680	Cucumber (Chinese Long) v3	cpecucB0039
Cp4.1LG09g01100	Bhi01G001009	Wax gourd	cpewgoB0025
Cp4.1LG09g01100	CsGy3G016590	Cucumber (Gy14) v2	cgybcpeB287
Cp4.1LG09g01100	Carg16709	Silver-seed gourd	carcpeB1214
Cp4.1LG09g01100	Carg26809	Silver-seed gourd	carcpeB0008

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG09g01100	Cp4.1LG14g05930	Cucurbita pepo (Zucchini)	cpecpeB023

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG09g01100	Cucurbita pepo (Zucchini)	cpecpeB057
Cp4.1LG09g01100	Cucurbita pepo (Zucchini)	cpecpeB058
Cp4.1LG09g01100	Cucumber (Gy14) v1	cgycpeB0788
Cp4.1LG09g01100	Cucurbita moschata (Rifu)	cmocpeB376
Cp4.1LG09g01100	Cucurbita moschata (Rifu)	cmocpeB546
Cp4.1LG09g01100	Wild cucumber (PI 183967)	cpecpiB040
Cp4.1LG09g01100	Cucumber (Chinese Long) v2	cpecuB046
Cp4.1LG09g01100	Watermelon (Charleston Gray)	cpewcgB023
Cp4.1LG09g01100	Watermelon (97103) v1	cpewmB036
Cp4.1LG09g01100	Melon (DHL92) v3.5.1	cpemeB020
Cp4.1LG09g01100	Cucumber (Gy14) v2	cgybcpeB584
Cp4.1LG09g01100	Melon (DHL92) v3.6.1	cpemedB024
Cp4.1LG09g01100	Silver-seed gourd	carcpeB0994
Cp4.1LG09g01100	Silver-seed gourd	carcpeB1267
Cp4.1LG09g01100	Cucumber (Chinese Long) v3	cpecucB0045