Cp4.1LG08g13630 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG08g13630
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
Description40S ribosomal protein s2
LocationCp4.1LG08 : 9779066 .. 9780769 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCCCTTCTTCCCCTTCGGTAAATTCTTGTCCAACGCCTCATATTTTTTCCTCTACCGTTTCTTCCTCTTTACTCCGATTATGGCGGAGCGCGGTGGATTTGGACGAGGGTTCGGCGGCAGAGGAGAAGTGGGTTCCGGTCACCAAGCTTGGTCGCCTCGTTAAAGAGGGAAAAATCCAGTCCTTGTACCAGATATACCACCACTCTCTCCCTATCAAGGAGCACCAGATCGTTGATACACTCATTGGCCCTAGCCTCAATGACGAGGCAATGAAGATCACGCCTGTCCAGAAGAAGACCCGTGCTGGGCAGAGAACCCGTTTCAAGGCGTTTGTCGTCGTCGGCGATGGTAATGGCCATGTGGGTTTGGGAGTCAAGTGTAGTAAAGAGGTTGCCACAGCGATTCGTGGCTCGATTATTTTGGCTAAGCTGTCTTTTGATCCCTGTGAGAAGAGGGTATTGGGGTAACAAAGATTGGTAAGCCCCATACAGTGCCCTGTAAGGTTACTGGAAAGTGTGGATCCGTCACCGTCCGGATGGTTCCGGCGCCACGAGGTGCTGGGATTGTGGCGGCTAGAGTGCCCAAGAAGGTCTTGCAATTTGCTGGGATTGAGGACGTGTTTACATCTTCTAGGGGATCGACTAAAACTCTCAGCAACTTTGTTAAGGTTTATCCTAAACTTGAATGGTTAATTTATTCTAGATTTTGGCTGTTTTCTACTAGCTTTTTGTTGATTTGAACTTTTGGGGTGCTTTATCATTATGGATACCACCACTTAGTTATTCAATTACTATATATTTTGTAGTCCATTCATTTGGAAAACTTCATCAGGATGGAATTCACTCTCAGGAAGTGTTGTTTTAAGTGTTCTTGATTTGTTTTCAGTGCAGATAATAACATTTAACCATATAATTTGTCCTCGAGTATTTTGCACTGCCTTCTATGTGTGCTAATTGGAGGAGTTGGCTAATTTCTACCTTAAAATTATGCAATATTTCTGTAATGTTTTTCTGGACTTGCATTGCATTGCGCTTTCTTAACTACATTTGTGCAACAACTCGCATTACTCTGTTCTACGTGAAGTTGAGCTTTTCTGCTACTGATGTCATCTTATATGTTTCATTTTTGTGGTGTCATGTCATGAGTCCATATGTTATCATCACTGATTTCAGAACTAATCATTTGATGAATGGATTTCATTTGGATGGGATGTTTAGTTTCCATTGCTCACTGATTCAAAACTTTTAAATAGCGTCTACTAAGGAGAGGTTTTCACACCCTTATAAGAAATGATTCGTTCTCCTCTCCAACCGACGTGAGATTCACATTTCTATACTGATTTTTTGTCTGCGGTTGCATAAACTAGTCGATAACTTCCCAATTTCCTGTTATAACCGGACGCTGTATCATTGTTGATTGTTCATAACAGTGAAATTGTAAACCAAATAAGAGACTGCTCTGGGGTTGTGTGTTCTAATTCAAATTGATTTGGATTTCTTTACTTGTGGGTGATGTTTTGATTTCATGTGGGGGTCTTATTTCAGGCAACCTTCGACTGCCTGCTGAAAACTTAGGGCTTCCTAACACCTGAGTTTTGGAGGGAGACACGGTTCACAAAATCCCCATTCAAAGAACACACAGATTTGTTGGCGAAACCCAGCGTGAAGGCATTGTTGTTAGAAGACCTCGAGAGGGCTGCTGCT

mRNA sequence

TTCCCTTCTTCCCCTTCGGTAAATTCTTGTCCAACGCCTCATATTTTTTCCTCTACCGTTTCTTCCTCTTTACTCCGATTATGGCGGAGCGCGGTGGATTTGGACGAGGGTTCGGCGGCAGAGGAGAAGTGGGTTCCGGTCACCAAGCTTGGTCGCCTCGTTAAAGAGGGAAAAATCCAGTCCTTGTACCAGATATACCACCACTCTCTCCCTATCAAGGAGCACCAGATCGTTGATACACTCATTGGCCCTAGCCTCAATGACGAGGCAATGAAGATCACGCCTGTCCAGAAGAAGACCCGTGCTGGGCAGAGAACCCGTTTCAAGGCGTTTGTCGTCGTCGGCGATGGTAATGGCCATGTGGGTTTGGGAGTCAAGTGTAGTAAAGAGGTTGCCACAGCGATTCGTGGCTCGATTATTTTGGCTAAGCTGTCTTTTGATCCCTGTGAGAAGAGGATTGGTAAGCCCCATACAGTGCCCTGTAAGGTTACTGGAAAGTGTGGATCCGTCACCGTCCGGATGGTTCCGGCGCCACGAGGTGCTGGGATTGTGGCGGCTAGAGTGCCCAAGAAGGTCTTGCAATTTGCTGGGATTGAGGACGTGTTTACATCTTCTAGGGGATCGACTAAAACTCTCAGCAACTTTGTTAAGGGCTTCCTAACACCTGAGTTTTGGAGGGAGACACGGTTCACAAAATCCCCATTCAAAGAACACACAGATTTGTTGGCGAAACCCAGCGTGAAGGCATTGTTGTTAGAAGACCTCGAGAGGGCTGCTGCT

Coding sequence (CDS)

TTCCCTTCTTCCCCTTCGGTAAATTCTTGTCCAACGCCTCATATTTTTTCCTCTACCGTTTCTTCCTCTTTACTCCGATTATGGCGGAGCGCGGTGGATTTGGACGAGGGTTCGGCGGCAGAGGAGAAGTGGGTTCCGGTCACCAAGCTTGGTCGCCTCGTTAAAGAGGGAAAAATCCAGTCCTTGTACCAGATATACCACCACTCTCTCCCTATCAAGGAGCACCAGATCGTTGATACACTCATTGGCCCTAGCCTCAATGACGAGGCAATGAAGATCACGCCTGTCCAGAAGAAGACCCGTGCTGGGCAGAGAACCCGTTTCAAGGCGTTTGTCGTCGTCGGCGATGGTAATGGCCATGTGGGTTTGGGAGTCAAGTGTAGTAAAGAGGTTGCCACAGCGATTCGTGGCTCGATTATTTTGGCTAAGCTGTCTTTTGATCCCTGTGAGAAGAGGATTGGTAAGCCCCATACAGTGCCCTGTAAGGTTACTGGAAAGTGTGGATCCGTCACCGTCCGGATGGTTCCGGCGCCACGAGGTGCTGGGATTGTGGCGGCTAGAGTGCCCAAGAAGGTCTTGCAATTTGCTGGGATTGAGGACGTGTTTACATCTTCTAGGGGATCGACTAAAACTCTCAGCAACTTTGTTAAGGGCTTCCTAACACCTGAGTTTTGGAGGGAGACACGGTTCACAAAATCCCCATTCAAAGAACACACAGATTTGTTGGCGAAACCCAGCGTGAAGGCATTGTTGTTAGAAGACCTCGAGAGGGCTGCTGCT

Protein sequence

FPSSPSVNSCPTPHIFSSTVSSSLLRLWRSAVDLDEGSAAEEKWVPVTKLGRLVKEGKIQSLYQIYHHSLPIKEHQIVDTLIGPSLNDEAMKITPVQKKTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSFDPCEKRIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLSNFVKGFLTPEFWRETRFTKSPFKEHTDLLAKPSVKALLLEDLERAAA
Homology
[Close]
BLAST of Cp4.1LG08g13630 vs. Swiss-Prot
Match: RS24_ARATH (40S ribosomal protein S2-4 OS=Arabidopsis thaliana GN=RPS2D PE=2 SV=1)

HSP 1 Score: 341.7 bits (875), Expect = 7.3e-93
Identity = 175/224 (78.12%), Postives = 191/224 (85.27%), Query Frame = 1 

Query: 41  EEKWVPVTKLGRLVKEGKIQSLYQIYHHSLPIKEHQIVDTLIGPSLNDEAMKITPVQKKT 100
           EEKWVPVTKLGRLVKEGKI  + QIY HSLP+KE+QI+D L+GPSL DE MKI PVQK+T
Sbjct: 42  EEKWVPVTKLGRLVKEGKITKIEQIYLHSLPVKEYQIIDLLVGPSLKDEVMKIMPVQKQT 101

Query: 101 RAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSFDPCEK-----RIGK 160
           RAGQRTRFKAF+VVGD NGHVGLGVKCSKEVATAIRG+IILAKLS  P  +     +IGK
Sbjct: 102 RAGQRTRFKAFIVVGDSNGHVGLGVKCSKEVATAIRGAIILAKLSVVPIRRGYWGNKIGK 161

Query: 161 PHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLSNF 220
           PHTVPCKVTGKCGSVTVRMVPAPRG+GIVAARVPKKVLQFAGI+DVFTSSRGSTKTL NF
Sbjct: 162 PHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNF 221

Query: 221 VK----------GFLTPEFWRETRFTKSPFKEHTD-LLAKPSVK 249
           VK          GFLTPEFW+ETRF+KSP++EHTD LL  P VK
Sbjct: 222 VKATFDCLQKTYGFLTPEFWKETRFSKSPYQEHTDFLLIPPGVK 265

[Close]
BLAST of Cp4.1LG08g13630 vs. Swiss-Prot
Match: RS23_ARATH (40S ribosomal protein S2-3 OS=Arabidopsis thaliana GN=RPS2C PE=1 SV=2)

HSP 1 Score: 336.7 bits (862), Expect = 2.3e-91
Identity = 170/225 (75.56%), Postives = 191/225 (84.89%), Query Frame = 1 

Query: 38  SAAEEKWVPVTKLGRLVKEGKIQSLYQIYHHSLPIKEHQIVDTLIGPSLNDEAMKITPVQ 97
           ++ EEKWVPVTKLGRLV  G I+ + QIY HSLP+KE+QI+D LIGP+L DE MKI PVQ
Sbjct: 48  ASEEEKWVPVTKLGRLVAAGHIKQIEQIYLHSLPVKEYQIIDMLIGPTLKDEVMKIMPVQ 107

Query: 98  KKTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSFDPCEK-----R 157
           K+TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRG+IILAKLS  P  +     +
Sbjct: 108 KQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNK 167

Query: 158 IGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTL 217
           IGKPHTVPCKVTGKCGSVTVRMVPAPRG+GIVAARVPKKVLQFAGI+DVFTSSRGSTKTL
Sbjct: 168 IGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTL 227

Query: 218 SNFVK----------GFLTPEFWRETRFTKSPFKEHTDLLAKPSV 248
            NFVK          GFLTPEFW+ETRF++SP++EHTD LA  ++
Sbjct: 228 GNFVKATFDCLQKTYGFLTPEFWKETRFSRSPYQEHTDFLASKAL 272

[Close]
BLAST of Cp4.1LG08g13630 vs. Swiss-Prot
Match: RS22_ARATH (40S ribosomal protein S2-2 OS=Arabidopsis thaliana GN=RPS2B PE=2 SV=1)

HSP 1 Score: 336.7 bits (862), Expect = 2.3e-91
Identity = 173/229 (75.55%), Postives = 193/229 (84.28%), Query Frame = 1 

Query: 37  GSAAEE-KWVPVTKLGRLVKEGKIQSLYQIYHHSLPIKEHQIVDTLIGPSLNDEAMKITP 96
           G A+EE KWVPVTKLGRLV + KI  L QIY HSLP+KE+QI+D L+GP+L DE MKI P
Sbjct: 45  GRASEETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMP 104

Query: 97  VQKKTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSFDPCEK---- 156
           VQK+TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRG+IILAKLS  P  +    
Sbjct: 105 VQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWG 164

Query: 157 -RIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTK 216
            +IGKPHTVPCKVTGKCGSVTVRMVPAPRG+GIVAARVPKKVLQFAGI+DVFTSSRGSTK
Sbjct: 165 NKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTK 224

Query: 217 TLSNFVK----------GFLTPEFWRETRFTKSPFKEHTDLLAKPSVKA 250
           TL NFVK          GFLTPEFW+ETRF++SP++EHTD L+  +V A
Sbjct: 225 TLGNFVKATFDCLQKTYGFLTPEFWKETRFSRSPYQEHTDFLSTKAVSA 273

[Close]
BLAST of Cp4.1LG08g13630 vs. Swiss-Prot
Match: RS21_ARATH (40S ribosomal protein S2-1 OS=Arabidopsis thaliana GN=RPS2A PE=2 SV=2)

HSP 1 Score: 336.7 bits (862), Expect = 2.3e-91
Identity = 173/229 (75.55%), Postives = 193/229 (84.28%), Query Frame = 1 

Query: 37  GSAAEE-KWVPVTKLGRLVKEGKIQSLYQIYHHSLPIKEHQIVDTLIGPSLNDEAMKITP 96
           G A+EE KWVPVTKLGRLV + KI  L QIY HSLP+KE+QI+D L+GP+L DE MKI P
Sbjct: 45  GRASEETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMP 104

Query: 97  VQKKTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSFDPCEK---- 156
           VQK+TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRG+IILAKLS  P  +    
Sbjct: 105 VQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWG 164

Query: 157 -RIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTK 216
            +IGKPHTVPCKVTGKCGSVTVRMVPAPRG+GIVAARVPKKVLQFAGI+DVFTSSRGSTK
Sbjct: 165 NKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTK 224

Query: 217 TLSNFVK----------GFLTPEFWRETRFTKSPFKEHTDLLAKPSVKA 250
           TL NFVK          GFLTPEFW+ETRF++SP++EHTD L+  +V A
Sbjct: 225 TLGNFVKATFDCLQKTYGFLTPEFWKETRFSRSPYQEHTDFLSTKAVSA 273

[Close]
BLAST of Cp4.1LG08g13630 vs. Swiss-Prot
Match: RS2_MOUSE (40S ribosomal protein S2 OS=Mus musculus GN=Rps2 PE=1 SV=3)

HSP 1 Score: 285.4 bits (729), Expect = 6.2e-76
Identity = 144/223 (64.57%), Postives = 173/223 (77.58%), Query Frame = 1 

Query: 37  GSAAEEKWVPVTKLGRLVKEGKIQSLYQIYHHSLPIKEHQIVDTLIGPSLNDEAMKITPV 96
           G A +++W+PVTKLGRLVK+ KI+SL +IY  SLPIKE +I+D  +G SL DE +KI PV
Sbjct: 53  GKAEDKEWIPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPV 112

Query: 97  QKKTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSFDPCEK----- 156
           QK+TRAGQRTRFKAFV +GD NGHVGLGVKCSKEVATAIRG+IILAKLS  P  +     
Sbjct: 113 QKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGN 172

Query: 157 RIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKT 216
           +IGKPHTVPCKVTG+CGSV VR++PAPRG GIV+A VPKK+L  AGI+D +TS+RG T T
Sbjct: 173 KIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTAT 232

Query: 217 LSNFVK----------GFLTPEFWRETRFTKSPFKEHTDLLAK 245
           L NF K           +LTP+ W+ET FTKSP++E TD L K
Sbjct: 233 LGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVK 275

[Close]
BLAST of Cp4.1LG08g13630 vs. TrEMBL
Match: A0A0A0KZQ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G166960 PE=3 SV=1)

HSP 1 Score: 387.5 bits (994), Expect = 1.3e-104
Identity = 203/235 (86.38%), Postives = 208/235 (88.51%), Query Frame = 1 

Query: 41  EEKWVPVTKLGRLVKEGKIQSLYQIYHHSLPIKEHQIVDTLIGPSLNDEAMKITPVQKKT 100
           EEKWVPVTKLGRLVKEGKIQSL QIY HSLPIKEHQIVDTLIGPSL DE MKI PVQK+T
Sbjct: 37  EEKWVPVTKLGRLVKEGKIQSLEQIYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQT 96

Query: 101 RAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSFDPCEK-----RIGK 160
           RAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLS  P  +     +IGK
Sbjct: 97  RAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGK 156

Query: 161 PHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLSNF 220
           PHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTL NF
Sbjct: 157 PHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNF 216

Query: 221 VK----------GFLTPEFWRETRFTKSPFKEHTDLLAKPSVKALLLEDLERAAA 261
           VK          GFLTPEFWRETRFTKSPF+EHTDLLAKP+VKALLLED ER AA
Sbjct: 217 VKATFDCLLKTYGFLTPEFWRETRFTKSPFQEHTDLLAKPTVKALLLEDAERGAA 271

[Close]
BLAST of Cp4.1LG08g13630 vs. TrEMBL
Match: A0A0A0LFC7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G816100 PE=3 SV=1)

HSP 1 Score: 384.0 bits (985), Expect = 1.4e-103
Identity = 201/235 (85.53%), Postives = 207/235 (88.09%), Query Frame = 1 

Query: 41  EEKWVPVTKLGRLVKEGKIQSLYQIYHHSLPIKEHQIVDTLIGPSLNDEAMKITPVQKKT 100
           EEKWVPVTKLGRLVKEGKIQSL QIY HSLPIKEHQIVDTLIGPSL DE MKI PVQK+T
Sbjct: 35  EEKWVPVTKLGRLVKEGKIQSLEQIYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQT 94

Query: 101 RAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSFDPCEK-----RIGK 160
           RAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLS  P  +     +IGK
Sbjct: 95  RAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGK 154

Query: 161 PHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLSNF 220
           PHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTL NF
Sbjct: 155 PHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNF 214

Query: 221 VK----------GFLTPEFWRETRFTKSPFKEHTDLLAKPSVKALLLEDLERAAA 261
           VK          GFLTPEFWRETRFTKSPF+EHTDLLAKP+VKALLLED +R  A
Sbjct: 215 VKATFDCLLRTYGFLTPEFWRETRFTKSPFQEHTDLLAKPTVKALLLEDPDRVTA 269

[Close]
BLAST of Cp4.1LG08g13630 vs. TrEMBL
Match: E5GBY7_CUCME (40S ribosomal protein s2 OS=Cucumis melo subsp. melo PE=3 SV=1)

HSP 1 Score: 382.9 bits (982), Expect = 3.2e-103
Identity = 200/235 (85.11%), Postives = 207/235 (88.09%), Query Frame = 1 

Query: 41  EEKWVPVTKLGRLVKEGKIQSLYQIYHHSLPIKEHQIVDTLIGPSLNDEAMKITPVQKKT 100
           EEKWVPVTKLGRLVKEG+IQSL QIY HSLPIKEHQIVDTLIGPSL DE MKI PVQK+T
Sbjct: 35  EEKWVPVTKLGRLVKEGRIQSLEQIYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQT 94

Query: 101 RAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSFDPCEK-----RIGK 160
           RAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLS  P  +     +IGK
Sbjct: 95  RAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGK 154

Query: 161 PHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLSNF 220
           PHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTL NF
Sbjct: 155 PHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNF 214

Query: 221 VK----------GFLTPEFWRETRFTKSPFKEHTDLLAKPSVKALLLEDLERAAA 261
           VK          GFLTPEFWRETRFTKSPF+EHTDLLAKP+VKALLLED +R  A
Sbjct: 215 VKATFDCLLKTYGFLTPEFWRETRFTKSPFQEHTDLLAKPTVKALLLEDPDRVTA 269

[Close]
BLAST of Cp4.1LG08g13630 vs. TrEMBL
Match: A0A059DI03_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A02370 PE=3 SV=1)

HSP 1 Score: 368.6 bits (945), Expect = 6.2e-99
Identity = 190/232 (81.90%), Postives = 203/232 (87.50%), Query Frame = 1 

Query: 41  EEKWVPVTKLGRLVKEGKIQSLYQIYHHSLPIKEHQIVDTLIGPSLNDEAMKITPVQKKT 100
           EEKWVPVTKLGRLVKEGKI SL QIY HSLPIKE+QI+DTL+GPSL DE MKI PVQK+T
Sbjct: 37  EEKWVPVTKLGRLVKEGKIHSLEQIYLHSLPIKEYQIIDTLVGPSLKDEVMKIMPVQKQT 96

Query: 101 RAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSFDPCEK-----RIGK 160
           RAGQRTRFKAFVVVGD NGHVGLGVKCSKEVATAIRGSIILAKLS  P  +     +IGK
Sbjct: 97  RAGQRTRFKAFVVVGDNNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGK 156

Query: 161 PHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLSNF 220
           PHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTL NF
Sbjct: 157 PHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNF 216

Query: 221 VK----------GFLTPEFWRETRFTKSPFKEHTDLLAKPSVKALLLEDLER 258
           VK          GFLTP+FWRETRFTKSPF+E+TD+LAKP+ KAL+L+D ER
Sbjct: 217 VKATFDCLLKTYGFLTPDFWRETRFTKSPFQEYTDMLAKPTGKALILDDAER 268

[Close]
BLAST of Cp4.1LG08g13630 vs. TrEMBL
Match: A0A151SUX4_CAJCA (40S ribosomal protein S2-4 OS=Cajanus cajan GN=KK1_014020 PE=3 SV=1)

HSP 1 Score: 368.6 bits (945), Expect = 6.2e-99
Identity = 189/229 (82.53%), Postives = 204/229 (89.08%), Query Frame = 1 

Query: 41  EEKWVPVTKLGRLVKEGKIQSLYQIYHHSLPIKEHQIVDTLIGPSLNDEAMKITPVQKKT 100
           EEKWVPVTKLGRLVKEGKI+SL QIY HSLPIKEHQIVDTL+GP+L DE MKITPVQK+T
Sbjct: 38  EEKWVPVTKLGRLVKEGKIRSLEQIYLHSLPIKEHQIVDTLVGPTLKDEVMKITPVQKQT 97

Query: 101 RAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSFDPCEK-----RIGK 160
           RAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRG+IILAKLS  P  +     +IGK
Sbjct: 98  RAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGK 157

Query: 161 PHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLSNF 220
           PHTVPCKVTGKCGSVTVRMVPAPRG+GIVAARVPKKVLQFAGIEDVFTSSRGSTKTL NF
Sbjct: 158 PHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNF 217

Query: 221 VK----------GFLTPEFWRETRFTKSPFKEHTDLLAKPSVKALLLED 255
           VK          GFLTPEFW+ETRF+KSPF+E+TDLLAKP+ KAL+LE+
Sbjct: 218 VKATFDCLMKTYGFLTPEFWKETRFSKSPFQEYTDLLAKPTGKALILEE 266

[Close]
BLAST of Cp4.1LG08g13630 vs. TAIR10
Match: AT3G57490.1 (AT3G57490.1 Ribosomal protein S5 family protein)

HSP 1 Score: 341.7 bits (875), Expect = 4.1e-94
Identity = 175/224 (78.12%), Postives = 191/224 (85.27%), Query Frame = 1 

Query: 41  EEKWVPVTKLGRLVKEGKIQSLYQIYHHSLPIKEHQIVDTLIGPSLNDEAMKITPVQKKT 100
           EEKWVPVTKLGRLVKEGKI  + QIY HSLP+KE+QI+D L+GPSL DE MKI PVQK+T
Sbjct: 42  EEKWVPVTKLGRLVKEGKITKIEQIYLHSLPVKEYQIIDLLVGPSLKDEVMKIMPVQKQT 101

Query: 101 RAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSFDPCEK-----RIGK 160
           RAGQRTRFKAF+VVGD NGHVGLGVKCSKEVATAIRG+IILAKLS  P  +     +IGK
Sbjct: 102 RAGQRTRFKAFIVVGDSNGHVGLGVKCSKEVATAIRGAIILAKLSVVPIRRGYWGNKIGK 161

Query: 161 PHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLSNF 220
           PHTVPCKVTGKCGSVTVRMVPAPRG+GIVAARVPKKVLQFAGI+DVFTSSRGSTKTL NF
Sbjct: 162 PHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNF 221

Query: 221 VK----------GFLTPEFWRETRFTKSPFKEHTD-LLAKPSVK 249
           VK          GFLTPEFW+ETRF+KSP++EHTD LL  P VK
Sbjct: 222 VKATFDCLQKTYGFLTPEFWKETRFSKSPYQEHTDFLLIPPGVK 265

[Close]
BLAST of Cp4.1LG08g13630 vs. TAIR10
Match: AT2G41840.1 (AT2G41840.1 Ribosomal protein S5 family protein)

HSP 1 Score: 336.7 bits (862), Expect = 1.3e-92
Identity = 170/225 (75.56%), Postives = 191/225 (84.89%), Query Frame = 1 

Query: 38  SAAEEKWVPVTKLGRLVKEGKIQSLYQIYHHSLPIKEHQIVDTLIGPSLNDEAMKITPVQ 97
           ++ EEKWVPVTKLGRLV  G I+ + QIY HSLP+KE+QI+D LIGP+L DE MKI PVQ
Sbjct: 48  ASEEEKWVPVTKLGRLVAAGHIKQIEQIYLHSLPVKEYQIIDMLIGPTLKDEVMKIMPVQ 107

Query: 98  KKTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSFDPCEK-----R 157
           K+TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRG+IILAKLS  P  +     +
Sbjct: 108 KQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNK 167

Query: 158 IGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTL 217
           IGKPHTVPCKVTGKCGSVTVRMVPAPRG+GIVAARVPKKVLQFAGI+DVFTSSRGSTKTL
Sbjct: 168 IGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTL 227

Query: 218 SNFVK----------GFLTPEFWRETRFTKSPFKEHTDLLAKPSV 248
            NFVK          GFLTPEFW+ETRF++SP++EHTD LA  ++
Sbjct: 228 GNFVKATFDCLQKTYGFLTPEFWKETRFSRSPYQEHTDFLASKAL 272

[Close]
BLAST of Cp4.1LG08g13630 vs. TAIR10
Match: AT1G58983.1 (AT1G58983.1 Ribosomal protein S5 family protein)

HSP 1 Score: 336.7 bits (862), Expect = 1.3e-92
Identity = 173/229 (75.55%), Postives = 193/229 (84.28%), Query Frame = 1 

Query: 37  GSAAEE-KWVPVTKLGRLVKEGKIQSLYQIYHHSLPIKEHQIVDTLIGPSLNDEAMKITP 96
           G A+EE KWVPVTKLGRLV + KI  L QIY HSLP+KE+QI+D L+GP+L DE MKI P
Sbjct: 45  GRASEETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMP 104

Query: 97  VQKKTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSFDPCEK---- 156
           VQK+TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRG+IILAKLS  P  +    
Sbjct: 105 VQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWG 164

Query: 157 -RIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTK 216
            +IGKPHTVPCKVTGKCGSVTVRMVPAPRG+GIVAARVPKKVLQFAGI+DVFTSSRGSTK
Sbjct: 165 NKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTK 224

Query: 217 TLSNFVK----------GFLTPEFWRETRFTKSPFKEHTDLLAKPSVKA 250
           TL NFVK          GFLTPEFW+ETRF++SP++EHTD L+  +V A
Sbjct: 225 TLGNFVKATFDCLQKTYGFLTPEFWKETRFSRSPYQEHTDFLSTKAVSA 273

[Close]
BLAST of Cp4.1LG08g13630 vs. TAIR10
Match: AT1G59359.1 (AT1G59359.1 Ribosomal protein S5 family protein)

HSP 1 Score: 336.7 bits (862), Expect = 1.3e-92
Identity = 173/229 (75.55%), Postives = 193/229 (84.28%), Query Frame = 1 

Query: 37  GSAAEE-KWVPVTKLGRLVKEGKIQSLYQIYHHSLPIKEHQIVDTLIGPSLNDEAMKITP 96
           G A+EE KWVPVTKLGRLV + KI  L QIY HSLP+KE+QI+D L+GP+L DE MKI P
Sbjct: 45  GRASEETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMP 104

Query: 97  VQKKTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSFDPCEK---- 156
           VQK+TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRG+IILAKLS  P  +    
Sbjct: 105 VQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWG 164

Query: 157 -RIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTK 216
            +IGKPHTVPCKVTGKCGSVTVRMVPAPRG+GIVAARVPKKVLQFAGI+DVFTSSRGSTK
Sbjct: 165 NKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTK 224

Query: 217 TLSNFVK----------GFLTPEFWRETRFTKSPFKEHTDLLAKPSVKA 250
           TL NFVK          GFLTPEFW+ETRF++SP++EHTD L+  +V A
Sbjct: 225 TLGNFVKATFDCLQKTYGFLTPEFWKETRFSRSPYQEHTDFLSTKAVSA 273

[Close]
BLAST of Cp4.1LG08g13630 vs. TAIR10
Match: AT1G58380.1 (AT1G58380.1 Ribosomal protein S5 family protein)

HSP 1 Score: 336.7 bits (862), Expect = 1.3e-92
Identity = 173/229 (75.55%), Postives = 193/229 (84.28%), Query Frame = 1 

Query: 37  GSAAEE-KWVPVTKLGRLVKEGKIQSLYQIYHHSLPIKEHQIVDTLIGPSLNDEAMKITP 96
           G A+EE KWVPVTKLGRLV + KI  L QIY HSLP+KE+QI+D L+GP+L DE MKI P
Sbjct: 45  GRASEETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMP 104

Query: 97  VQKKTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSFDPCEK---- 156
           VQK+TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRG+IILAKLS  P  +    
Sbjct: 105 VQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWG 164

Query: 157 -RIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTK 216
            +IGKPHTVPCKVTGKCGSVTVRMVPAPRG+GIVAARVPKKVLQFAGI+DVFTSSRGSTK
Sbjct: 165 NKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTK 224

Query: 217 TLSNFVK----------GFLTPEFWRETRFTKSPFKEHTDLLAKPSVKA 250
           TL NFVK          GFLTPEFW+ETRF++SP++EHTD L+  +V A
Sbjct: 225 TLGNFVKATFDCLQKTYGFLTPEFWKETRFSRSPYQEHTDFLSTKAVSA 273

[Close]
BLAST of Cp4.1LG08g13630 vs. NCBI nr
Match: gi|778692263|ref|XP_004149390.2| (PREDICTED: 40S ribosomal protein S2-4-like [Cucumis sativus])

HSP 1 Score: 387.5 bits (994), Expect = 1.8e-104
Identity = 203/235 (86.38%), Postives = 208/235 (88.51%), Query Frame = 1 

Query: 41  EEKWVPVTKLGRLVKEGKIQSLYQIYHHSLPIKEHQIVDTLIGPSLNDEAMKITPVQKKT 100
           EEKWVPVTKLGRLVKEGKIQSL QIY HSLPIKEHQIVDTLIGPSL DE MKI PVQK+T
Sbjct: 37  EEKWVPVTKLGRLVKEGKIQSLEQIYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQT 96

Query: 101 RAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSFDPCEK-----RIGK 160
           RAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLS  P  +     +IGK
Sbjct: 97  RAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGK 156

Query: 161 PHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLSNF 220
           PHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTL NF
Sbjct: 157 PHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNF 216

Query: 221 VK----------GFLTPEFWRETRFTKSPFKEHTDLLAKPSVKALLLEDLERAAA 261
           VK          GFLTPEFWRETRFTKSPF+EHTDLLAKP+VKALLLED ER AA
Sbjct: 217 VKATFDCLLKTYGFLTPEFWRETRFTKSPFQEHTDLLAKPTVKALLLEDAERGAA 271

[Close]
BLAST of Cp4.1LG08g13630 vs. NCBI nr
Match: gi|659121645|ref|XP_008460763.1| (PREDICTED: 40S ribosomal protein S2-4-like [Cucumis melo])

HSP 1 Score: 387.5 bits (994), Expect = 1.8e-104
Identity = 203/235 (86.38%), Postives = 208/235 (88.51%), Query Frame = 1 

Query: 41  EEKWVPVTKLGRLVKEGKIQSLYQIYHHSLPIKEHQIVDTLIGPSLNDEAMKITPVQKKT 100
           EEKWVPVTKLGRLVKEGKIQSL QIY HSLPIKEHQIVDTLIGPSL DE MKI PVQK+T
Sbjct: 37  EEKWVPVTKLGRLVKEGKIQSLEQIYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQT 96

Query: 101 RAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSFDPCEK-----RIGK 160
           RAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLS  P  +     +IGK
Sbjct: 97  RAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGK 156

Query: 161 PHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLSNF 220
           PHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTL NF
Sbjct: 157 PHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNF 216

Query: 221 VK----------GFLTPEFWRETRFTKSPFKEHTDLLAKPSVKALLLEDLERAAA 261
           VK          GFLTPEFWRETRFTKSPF+EHTDLLAKP+VKALLLED ER AA
Sbjct: 217 VKATFDCLLKTYGFLTPEFWRETRFTKSPFQEHTDLLAKPTVKALLLEDAERVAA 271

[Close]
BLAST of Cp4.1LG08g13630 vs. NCBI nr
Match: gi|778685074|ref|XP_011652156.1| (PREDICTED: 40S ribosomal protein S2-4 [Cucumis sativus])

HSP 1 Score: 384.0 bits (985), Expect = 2.0e-103
Identity = 201/235 (85.53%), Postives = 207/235 (88.09%), Query Frame = 1 

Query: 41  EEKWVPVTKLGRLVKEGKIQSLYQIYHHSLPIKEHQIVDTLIGPSLNDEAMKITPVQKKT 100
           EEKWVPVTKLGRLVKEGKIQSL QIY HSLPIKEHQIVDTLIGPSL DE MKI PVQK+T
Sbjct: 35  EEKWVPVTKLGRLVKEGKIQSLEQIYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQT 94

Query: 101 RAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSFDPCEK-----RIGK 160
           RAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLS  P  +     +IGK
Sbjct: 95  RAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGK 154

Query: 161 PHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLSNF 220
           PHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTL NF
Sbjct: 155 PHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNF 214

Query: 221 VK----------GFLTPEFWRETRFTKSPFKEHTDLLAKPSVKALLLEDLERAAA 261
           VK          GFLTPEFWRETRFTKSPF+EHTDLLAKP+VKALLLED +R  A
Sbjct: 215 VKATFDCLLRTYGFLTPEFWRETRFTKSPFQEHTDLLAKPTVKALLLEDPDRVTA 269

[Close]
BLAST of Cp4.1LG08g13630 vs. NCBI nr
Match: gi|659085013|ref|XP_008443195.1| (PREDICTED: 40S ribosomal protein S2-3-like [Cucumis melo])

HSP 1 Score: 382.9 bits (982), Expect = 4.5e-103
Identity = 200/235 (85.11%), Postives = 207/235 (88.09%), Query Frame = 1 

Query: 41  EEKWVPVTKLGRLVKEGKIQSLYQIYHHSLPIKEHQIVDTLIGPSLNDEAMKITPVQKKT 100
           EEKWVPVTKLGRLVKEG+IQSL QIY HSLPIKEHQIVDTLIGPSL DE MKI PVQK+T
Sbjct: 35  EEKWVPVTKLGRLVKEGRIQSLEQIYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQT 94

Query: 101 RAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSFDPCEK-----RIGK 160
           RAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLS  P  +     +IGK
Sbjct: 95  RAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGK 154

Query: 161 PHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLSNF 220
           PHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTL NF
Sbjct: 155 PHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNF 214

Query: 221 VK----------GFLTPEFWRETRFTKSPFKEHTDLLAKPSVKALLLEDLERAAA 261
           VK          GFLTPEFWRETRFTKSPF+EHTDLLAKP+VKALLLED +R  A
Sbjct: 215 VKATFDCLLKTYGFLTPEFWRETRFTKSPFQEHTDLLAKPTVKALLLEDPDRVTA 269

[Close]
BLAST of Cp4.1LG08g13630 vs. NCBI nr
Match: gi|702247801|ref|XP_010057233.1| (PREDICTED: 40S ribosomal protein S2-4 [Eucalyptus grandis])

HSP 1 Score: 368.6 bits (945), Expect = 8.8e-99
Identity = 190/232 (81.90%), Postives = 203/232 (87.50%), Query Frame = 1 

Query: 41  EEKWVPVTKLGRLVKEGKIQSLYQIYHHSLPIKEHQIVDTLIGPSLNDEAMKITPVQKKT 100
           EEKWVPVTKLGRLVKEGKI SL QIY HSLPIKE+QI+DTL+GPSL DE MKI PVQK+T
Sbjct: 37  EEKWVPVTKLGRLVKEGKIHSLEQIYLHSLPIKEYQIIDTLVGPSLKDEVMKIMPVQKQT 96

Query: 101 RAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSFDPCEK-----RIGK 160
           RAGQRTRFKAFVVVGD NGHVGLGVKCSKEVATAIRGSIILAKLS  P  +     +IGK
Sbjct: 97  RAGQRTRFKAFVVVGDNNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGK 156

Query: 161 PHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLSNF 220
           PHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTL NF
Sbjct: 157 PHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNF 216

Query: 221 VK----------GFLTPEFWRETRFTKSPFKEHTDLLAKPSVKALLLEDLER 258
           VK          GFLTP+FWRETRFTKSPF+E+TD+LAKP+ KAL+L+D ER
Sbjct: 217 VKATFDCLLKTYGFLTPDFWRETRFTKSPFQEYTDMLAKPTGKALILDDAER 268

The following BLAST results are available for this feature:
BLAST of Cp4.1LG08g13630 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RS24_ARATH7.3e-9378.1340S ribosomal protein S2-4 OS=Arabidopsis thaliana GN=RPS2D PE=2 SV=1[more]
RS23_ARATH2.3e-9175.5640S ribosomal protein S2-3 OS=Arabidopsis thaliana GN=RPS2C PE=1 SV=2[more]
RS22_ARATH2.3e-9175.5540S ribosomal protein S2-2 OS=Arabidopsis thaliana GN=RPS2B PE=2 SV=1[more]
RS21_ARATH2.3e-9175.5540S ribosomal protein S2-1 OS=Arabidopsis thaliana GN=RPS2A PE=2 SV=2[more]
RS2_MOUSE6.2e-7664.5740S ribosomal protein S2 OS=Mus musculus GN=Rps2 PE=1 SV=3[more]
BLAST of Cp4.1LG08g13630 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZQ4_CUCSA1.3e-10486.38Uncharacterized protein OS=Cucumis sativus GN=Csa_4G166960 PE=3 SV=1[more]
A0A0A0LFC7_CUCSA1.4e-10385.53Uncharacterized protein OS=Cucumis sativus GN=Csa_3G816100 PE=3 SV=1[more]
E5GBY7_CUCME3.2e-10385.1140S ribosomal protein s2 OS=Cucumis melo subsp. melo PE=3 SV=1[more]
A0A059DI03_EUCGR6.2e-9981.90Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A02370 PE=3 SV=1[more]
A0A151SUX4_CAJCA6.2e-9982.5340S ribosomal protein S2-4 OS=Cajanus cajan GN=KK1_014020 PE=3 SV=1[more]
BLAST of Cp4.1LG08g13630 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G57490.14.1e-9478.13 Ribosomal protein S5 family protein[more]
AT2G41840.11.3e-9275.56 Ribosomal protein S5 family protein[more]
AT1G58983.11.3e-9275.55 Ribosomal protein S5 family protein[more]
AT1G59359.11.3e-9275.55 Ribosomal protein S5 family protein[more]
AT1G58380.11.3e-9275.55 Ribosomal protein S5 family protein[more]
BLAST of Cp4.1LG08g13630 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778692263|ref|XP_004149390.2|1.8e-10486.38PREDICTED: 40S ribosomal protein S2-4-like [Cucumis sativus][more]
gi|659121645|ref|XP_008460763.1|1.8e-10486.38PREDICTED: 40S ribosomal protein S2-4-like [Cucumis melo][more]
gi|778685074|ref|XP_011652156.1|2.0e-10385.53PREDICTED: 40S ribosomal protein S2-4 [Cucumis sativus][more]
gi|659085013|ref|XP_008443195.1|4.5e-10385.11PREDICTED: 40S ribosomal protein S2-3-like [Cucumis melo][more]
gi|702247801|ref|XP_010057233.1|8.8e-9981.90PREDICTED: 40S ribosomal protein S2-4 [Eucalyptus grandis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0015935small ribosomal subunit
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR020568Ribosomal_S5_D2-typ_fold
IPR018192Ribosomal_S5_N_CS
IPR014721Ribosomal_S5_D2-typ_fold_subgr
IPR014720dsRBD_dom
IPR013810Ribosomal_S5_N
IPR005711Ribosomal_S5_euk/arc
IPR005324Ribosomal_S5_C
IPR000851Ribosomal_S5
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG08g13630.1Cp4.1LG08g13630.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000851Ribosomal protein S5PANTHERPTHR13718RIBOSOMAL S SUBUNITcoord: 41..253
score: 4.3E
IPR005324Ribosomal protein S5, C-terminalPFAMPF03719Ribosomal_S5_Ccoord: 164..220
score: 1.3
IPR005711Ribosomal protein S5, eukaryotic/archaealTIGRFAMsTIGR01020TIGR01020coord: 40..218
score: 1.0
IPR013810Ribosomal protein S5, N-terminalPFAMPF00333Ribosomal_S5coord: 86..146
score: 5.1
IPR013810Ribosomal protein S5, N-terminalPROFILEPS50881S5_DSRBDcoord: 86..149
score: 2
IPR014720Double-stranded RNA-binding domainGENE3DG3DSA:3.30.160.20coord: 83..146
score: 1.4
IPR014721Ribosomal protein S5 domain 2-type fold, subgroupGENE3DG3DSA:3.30.230.10coord: 153..219
score: 1.2
IPR018192Ribosomal protein S5, N-terminal, conserved sitePROSITEPS00585RIBOSOMAL_S5coord: 103..135
scor
IPR020568Ribosomal protein S5 domain 2-type foldunknownSSF54211Ribosomal protein S5 domain 2-likecoord: 157..220
score: 6.07
NoneNo IPR availablePANTHERPTHR13718:SF69SUBFAMILY NOT NAMEDcoord: 41..253
score: 4.3E
NoneNo IPR availableunknownSSF54768dsRNA-binding domain-likecoord: 82..147
score: 2.09