Carg01276 (gene) Silver-seed gourd

Overview
NameCarg01276
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Description30S ribosomal protein S5
LocationCucurbita_argyrosperma_scaffold_002 : 1901096 .. 1902712 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGAGCGCGGTGGATTTCGACGAGGGTTCGGCGGCAGAGGCCGCGGCGGTTGCCGTCGTGCTGTTCGACGCGACGAAGAGGAGAAGTGGGTTCCGGTCACCAAGCTTGGTCGCCTCGTAAAAGAGGGAAAAATCCAGTCCTTGGAGCAGATATACCACCACTCTCTCCCTATTAAGTAGCACCAGATCGTTGATACACTCATTGGCCCTAGCCTCAAGGACGAGGTAATGAAGATCACGCCTGTCCAGAAGCAGACCCGTGCTGGACAGAGAACCCGTTTCAAGGCGCTTGTCGTCGTCGGCGATGGTAATGGCCATGTGGGTTTGGGAGTCAAGTGTAGTGAAGAGGTTGCCACAGCGATTCGTGGCTCGATTATTTTGGCTAAGCTGTCTTTTGATCCCTGTGAGAAGAGGGTATTGGGGTAACAAGATTGGTAAGCCTCATACAGTACCTTGTAAGGTTACTGGAAAATGTGGATCCGTCAGCGTCCGGATGGTTCCGGCGCCACGAGGTGCTGGGATTGTGGCGGCTAGAGTGCCCAAGAAGGTCTTGCAATTTGCTGGGATCGAGGACGTGTTTACATCTTCTAGGGGATCGACTAAAACTCTCGGCAACTTTGTTAAGGTTTGTCCTAACCTTGAATGGTTAATTTATTCTATCTAGTTCAGATTTTGGCTGTTTTCTACTAGCTTTTTGTTGATTTGAACTTTTGGGGTGCTTTATCATTATGGATACCACCACTTAGTTATTCAATTACTATATATTTTGTAGTCCATTCATTTGGAAAGCTTCATCAGGATGGAATTCACCCTCAGGAAGTGTAGTTTTAAGTGTTCTTGATTTGTTTTCAGTGTAGATAATAACATTTAACCATATAATTTGTGGTGTCATGTCATGAGTCCATATGTTATCATCACTGATTTCAGAACTAATCATTTGATGAATGGATTTCATTTGGATAGGATGTTTAGTTTTGATGGCTCAGGAGTGGTGATTCATCAAAACTTTTCTGTAACTACCAAGTTCACTGCCACCCGATATTGTTCTCTTTACGCTTTCCCTTTAAGAGTTTCCTTTCAAGGTTTCAAAACCCTATCCATTCGGGAGAGGTTTCTACATCCTTCTAAGAAATGTTTTGTTCCCTTCTGCAATTGATGTGAGATCTCACAATCCACTCTCTTAGGGACCAGCATCCTTGCTGGCACACCGCTCAATGTCTAACTCTAATACCATTTGTAACAGTTCAAGCCCACCGGTAGCAGATATTGTCCTTTGTGTGTTTTCTTTTCAAGGTTTTAAATTGCGTCTACTGAGAAGAAGCCTTATAAGGAATTATTTGTTGTATCGATGTGAAATTATACTTATACTGATTTTTTTGTCTGCGGTCGCACAAACTAGTCTGTAACTTCCCAATTTTCTTTCCCAATTTTCTGTTATAACCGGACGCTGTATCATTGTTGATTGTTCATAACAGTGAAATTGTAAACCAAATAAGAGACGGCTGTGGGGTTGTGTGTTGTAATTCAAATTGATTTGGATCTCTTTACTTGTATTTTTGATTTCATGTGGGGGTCTTATTTCAGGCAACCTTCGACTGCCTGCTGAAAACTTAG

mRNA sequence

ATGGCGGAGCGCGGTGGATTTCGACGAGGGTTCGGCGGCAGAGGCCGCGGCGGTTGCCGTCGTGCTGTTCGACGCGACGAAGAGGAGAAGTGGGTTCCGCACCAGATCGTTGATACACTCATTGGCCCTAGCCTCAAGGACGAGGTAATGAAGATCACGCCTGTCCAGAAGCAGACCCGTGCTGGACAGAGAACCCGTTTCAAGGCGCTTGTCGTCGTCGGCGATGGTAATGGCCATGTGGGTTTGGGAGTCAAGTGTAGTGAAGAGGTTGCCACAGCGATTCGTGGCTCGATTATTTTGGCTAAGCTGTCTTTTGATCCCTGTGAGAAGAGGGTATTGGGCGTCCGGATGGTTCCGGCGCCACGAGGTGCTGGGATTGTGGCGGCTAGAGTGCCCAAGAAGGTCTTGCAATTTGCTGGGATCGAGGACGTGTTTACATCTTCTAGGGGATCGACTAAAACTCTCGGCAACTTTGTTAAGGCAACCTTCGACTGCCTGCTGAAAACTTAG

Coding sequence (CDS)

ATGGCGGAGCGCGGTGGATTTCGACGAGGGTTCGGCGGCAGAGGCCGCGGCGGTTGCCGTCGTGCTGTTCGACGCGACGAAGAGGAGAAGTGGGTTCCGCACCAGATCGTTGATACACTCATTGGCCCTAGCCTCAAGGACGAGGTAATGAAGATCACGCCTGTCCAGAAGCAGACCCGTGCTGGACAGAGAACCCGTTTCAAGGCGCTTGTCGTCGTCGGCGATGGTAATGGCCATGTGGGTTTGGGAGTCAAGTGTAGTGAAGAGGTTGCCACAGCGATTCGTGGCTCGATTATTTTGGCTAAGCTGTCTTTTGATCCCTGTGAGAAGAGGGTATTGGGCGTCCGGATGGTTCCGGCGCCACGAGGTGCTGGGATTGTGGCGGCTAGAGTGCCCAAGAAGGTCTTGCAATTTGCTGGGATCGAGGACGTGTTTACATCTTCTAGGGGATCGACTAAAACTCTCGGCAACTTTGTTAAGGCAACCTTCGACTGCCTGCTGAAAACTTAG

Protein sequence

MAERGGFRRGFGGRGRGGCRRAVRRDEEEKWVPHQIVDTLIGPSLKDEVMKITPVQKQTRAGQRTRFKALVVVGDGNGHVGLGVKCSEEVATAIRGSIILAKLSFDPCEKRVLGVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLLKT
Homology
[Close]
BLAST of Carg01276 vs. NCBI nr
Match: XP_021278533.1 (40S ribosomal protein S2-4-like [Herrania umbratica])

HSP 1 Score: 246.5 bits (628), Expect = 6.4e-62
Identity = 144/218 (66.06%), Postives = 151/218 (69.27%), Query Frame = 0 

Query: 3   ERGGFRRGFGGRGRGG--CRRAVRRDEEEKWVP--------------------------- 62
           ERG FRRGFGGR   G   RR  R+DEEEKWVP                           
Sbjct: 8   ERGAFRRGFGGRSDRGPRGRRRGRKDEEEKWVPVTKLGRLVKAGKITSLEQIYLHSLPIK 67

Query: 63  -HQIVDTLIGPSLKDEVMKITPVQKQTRAGQRTRFKALVVVGDGNGHVGLGVKCSEEVAT 122
            +QIVD L+GPSLKDEVMKITPVQKQTRAGQRTRFKA VVVGDGNGHVGLGVKCS+EVAT
Sbjct: 68  EYQIVDQLVGPSLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVAT 127

Query: 123 AIRGSIILAKLSFDPCEKRVLG---------------------VRMVPAPRGAGIVAARV 170
           AIRG+IILAKLS  P  +   G                     VRMVPAPRGAGIVAARV
Sbjct: 128 AIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARV 187

[Close]
BLAST of Carg01276 vs. NCBI nr
Match: XP_021279298.1 (40S ribosomal protein S2-4-like [Herrania umbratica])

HSP 1 Score: 246.5 bits (628), Expect = 6.4e-62
Identity = 144/218 (66.06%), Postives = 151/218 (69.27%), Query Frame = 0 

Query: 3   ERGGFRRGFGGRGRGG--CRRAVRRDEEEKWVP--------------------------- 62
           ERG FRRGFGGR   G   RR  R+DEEEKWVP                           
Sbjct: 8   ERGAFRRGFGGRSDRGPRGRRRGRKDEEEKWVPVTKLGRLVKAGKITSLEQIYLHSLPIK 67

Query: 63  -HQIVDTLIGPSLKDEVMKITPVQKQTRAGQRTRFKALVVVGDGNGHVGLGVKCSEEVAT 122
            +QIVD L+GPSLKDEVMKITPVQKQTRAGQRTRFKA VVVGDGNGHVGLGVKCS+EVAT
Sbjct: 68  EYQIVDQLVGPSLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVAT 127

Query: 123 AIRGSIILAKLSFDPCEKRVLG---------------------VRMVPAPRGAGIVAARV 170
           AIRG+IILAKLS  P  +   G                     VRMVPAPRGAGIVAARV
Sbjct: 128 AIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARV 187

[Close]
BLAST of Carg01276 vs. NCBI nr
Match: XP_022722903.1 (40S ribosomal protein S2-4-like [Durio zibethinus])

HSP 1 Score: 246.5 bits (628), Expect = 6.4e-62
Identity = 144/218 (66.06%), Postives = 151/218 (69.27%), Query Frame = 0 

Query: 3   ERGGFRRGFGGRGRGG--CRRAVRRDEEEKWVP--------------------------- 62
           ERG FRRGFGGR   G   RR  R+DEEEKWVP                           
Sbjct: 8   ERGAFRRGFGGRSDRGPRGRRRGRKDEEEKWVPVTKLGRLVKSGKITSLEQIYLHSLPIK 67

Query: 63  -HQIVDTLIGPSLKDEVMKITPVQKQTRAGQRTRFKALVVVGDGNGHVGLGVKCSEEVAT 122
            +QIVD L+GPSLKDEVMKITPVQKQTRAGQRTRFKA VVVGDGNGHVGLGVKCS+EVAT
Sbjct: 68  EYQIVDQLVGPSLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVAT 127

Query: 123 AIRGSIILAKLSFDPCEKRVLG---------------------VRMVPAPRGAGIVAARV 170
           AIRG+IILAKLS  P  +   G                     VRMVPAPRGAGIVAARV
Sbjct: 128 AIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARV 187

[Close]
BLAST of Carg01276 vs. NCBI nr
Match: XP_017611355.1 (PREDICTED: 40S ribosomal protein S2-4-like [Gossypium arboreum] >KHG06565.1 40S ribosomal S2-2 -like protein [Gossypium arboreum] >PPS12573.1 hypothetical protein GOBAR_AA08079 [Gossypium barbadense])

HSP 1 Score: 245.7 bits (626), Expect = 1.1e-61
Identity = 143/218 (65.60%), Postives = 151/218 (69.27%), Query Frame = 0 

Query: 3   ERGGFRRGFGGRGRGG--CRRAVRRDEEEKWVP--------------------------- 62
           ERG FRRGFGGR   G   RR  RR+EEEKWVP                           
Sbjct: 8   ERGAFRRGFGGRSDRGPRGRRRGRREEEEKWVPVTKLGRLVKTGKITSLEQIYLHSLPIK 67

Query: 63  -HQIVDTLIGPSLKDEVMKITPVQKQTRAGQRTRFKALVVVGDGNGHVGLGVKCSEEVAT 122
            +QI+D L+GPSLKDEVMKITPVQKQTRAGQRTRFKA VVVGDGNGHVGLGVKCS+EVAT
Sbjct: 68  EYQIIDQLVGPSLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVAT 127

Query: 123 AIRGSIILAKLSFDPCEKRVLG---------------------VRMVPAPRGAGIVAARV 170
           AIRG+IILAKLS  P  +   G                     VRMVPAPRGAGIVAARV
Sbjct: 128 AIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARV 187

[Close]
BLAST of Carg01276 vs. NCBI nr
Match: XP_016669195.1 (PREDICTED: 40S ribosomal protein S2-4-like [Gossypium hirsutum])

HSP 1 Score: 245.7 bits (626), Expect = 1.1e-61
Identity = 143/218 (65.60%), Postives = 151/218 (69.27%), Query Frame = 0 

Query: 3   ERGGFRRGFGGRGRGG--CRRAVRRDEEEKWVP--------------------------- 62
           ERG FRRGFGGR   G   RR  RR+EEEKWVP                           
Sbjct: 8   ERGAFRRGFGGRSDRGPRGRRRGRREEEEKWVPVTKLGRLVKTGKITSLEQIYLHSLPIK 67

Query: 63  -HQIVDTLIGPSLKDEVMKITPVQKQTRAGQRTRFKALVVVGDGNGHVGLGVKCSEEVAT 122
            +QI+D L+GPSLKDEVMKITPVQKQTRAGQRTRFKA VVVGDGNGHVGLGVKCS+EVAT
Sbjct: 68  EYQIIDQLVGPSLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVAT 127

Query: 123 AIRGSIILAKLSFDPCEKRVLG---------------------VRMVPAPRGAGIVAARV 170
           AIRG+IILAKLS  P  +   G                     VRMVPAPRGAGIVAARV
Sbjct: 128 AIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARV 187

[Close]
BLAST of Carg01276 vs. TAIR10
Match: AT2G41840.1 (Ribosomal protein S5 family protein)

HSP 1 Score: 219.5 bits (558), Expect = 1.5e-57
Identity = 124/192 (64.58%), Postives = 132/192 (68.75%), Query Frame = 0 

Query: 27  EEEKWVP----------------------------HQIVDTLIGPSLKDEVMKITPVQKQ 86
           EEEKWVP                            +QI+D LIGP+LKDEVMKI PVQKQ
Sbjct: 50  EEEKWVPVTKLGRLVAAGHIKQIEQIYLHSLPVKEYQIIDMLIGPTLKDEVMKIMPVQKQ 109

Query: 87  TRAGQRTRFKALVVVGDGNGHVGLGVKCSEEVATAIRGSIILAKLSFDPCEKRVLG---- 146
           TRAGQRTRFKA VVVGDGNGHVGLGVKCS+EVATAIRG+IILAKLS  P  +   G    
Sbjct: 110 TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIG 169

Query: 147 -----------------VRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGN 170
                            VRMVPAPRG+GIVAARVPKKVLQFAGI+DVFTSSRGSTKTLGN
Sbjct: 170 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGN 229

[Close]
BLAST of Carg01276 vs. TAIR10
Match: AT1G58983.1 (Ribosomal protein S5 family protein)

HSP 1 Score: 217.6 bits (553), Expect = 5.8e-57
Identity = 116/157 (73.89%), Postives = 125/157 (79.62%), Query Frame = 0 

Query: 34  HQIVDTLIGPSLKDEVMKITPVQKQTRAGQRTRFKALVVVGDGNGHVGLGVKCSEEVATA 93
           +QI+D L+GP+LKDEVMKI PVQKQTRAGQRTRFKA VVVGDGNGHVGLGVKCS+EVATA
Sbjct: 84  YQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATA 143

Query: 94  IRGSIILAKLSFDPCEKRVLG---------------------VRMVPAPRGAGIVAARVP 153
           IRG+IILAKLS  P  +   G                     VRMVPAPRG+GIVAARVP
Sbjct: 144 IRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVP 203

Query: 154 KKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLLKT 170
           KKVLQFAGI+DVFTSSRGSTKTLGNFVKATFDCL KT
Sbjct: 204 KKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLQKT 240

[Close]
BLAST of Carg01276 vs. TAIR10
Match: AT1G59359.1 (Ribosomal protein S5 family protein)

HSP 1 Score: 217.6 bits (553), Expect = 5.8e-57
Identity = 116/157 (73.89%), Postives = 125/157 (79.62%), Query Frame = 0 

Query: 34  HQIVDTLIGPSLKDEVMKITPVQKQTRAGQRTRFKALVVVGDGNGHVGLGVKCSEEVATA 93
           +QI+D L+GP+LKDEVMKI PVQKQTRAGQRTRFKA VVVGDGNGHVGLGVKCS+EVATA
Sbjct: 84  YQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATA 143

Query: 94  IRGSIILAKLSFDPCEKRVLG---------------------VRMVPAPRGAGIVAARVP 153
           IRG+IILAKLS  P  +   G                     VRMVPAPRG+GIVAARVP
Sbjct: 144 IRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVP 203

Query: 154 KKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLLKT 170
           KKVLQFAGI+DVFTSSRGSTKTLGNFVKATFDCL KT
Sbjct: 204 KKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLQKT 240

[Close]
BLAST of Carg01276 vs. TAIR10
Match: AT1G58380.1 (Ribosomal protein S5 family protein)

HSP 1 Score: 217.6 bits (553), Expect = 5.8e-57
Identity = 116/157 (73.89%), Postives = 125/157 (79.62%), Query Frame = 0 

Query: 34  HQIVDTLIGPSLKDEVMKITPVQKQTRAGQRTRFKALVVVGDGNGHVGLGVKCSEEVATA 93
           +QI+D L+GP+LKDEVMKI PVQKQTRAGQRTRFKA VVVGDGNGHVGLGVKCS+EVATA
Sbjct: 84  YQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATA 143

Query: 94  IRGSIILAKLSFDPCEKRVLG---------------------VRMVPAPRGAGIVAARVP 153
           IRG+IILAKLS  P  +   G                     VRMVPAPRG+GIVAARVP
Sbjct: 144 IRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVP 203

Query: 154 KKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLLKT 170
           KKVLQFAGI+DVFTSSRGSTKTLGNFVKATFDCL KT
Sbjct: 204 KKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLQKT 240

[Close]
BLAST of Carg01276 vs. TAIR10
Match: AT1G58684.1 (Ribosomal protein S5 family protein)

HSP 1 Score: 217.6 bits (553), Expect = 5.8e-57
Identity = 116/157 (73.89%), Postives = 125/157 (79.62%), Query Frame = 0 

Query: 34  HQIVDTLIGPSLKDEVMKITPVQKQTRAGQRTRFKALVVVGDGNGHVGLGVKCSEEVATA 93
           +QI+D L+GP+LKDEVMKI PVQKQTRAGQRTRFKA VVVGDGNGHVGLGVKCS+EVATA
Sbjct: 84  YQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATA 143

Query: 94  IRGSIILAKLSFDPCEKRVLG---------------------VRMVPAPRGAGIVAARVP 153
           IRG+IILAKLS  P  +   G                     VRMVPAPRG+GIVAARVP
Sbjct: 144 IRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVP 203

Query: 154 KKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLLKT 170
           KKVLQFAGI+DVFTSSRGSTKTLGNFVKATFDCL KT
Sbjct: 204 KKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLQKT 240

[Close]
BLAST of Carg01276 vs. Swiss-Prot
Match: sp|P49688|RS23_ARATH (40S ribosomal protein S2-3 OS=Arabidopsis thaliana OX=3702 GN=RPS2C PE=1 SV=2)

HSP 1 Score: 219.5 bits (558), Expect = 2.7e-56
Identity = 124/192 (64.58%), Postives = 132/192 (68.75%), Query Frame = 0 

Query: 27  EEEKWVP----------------------------HQIVDTLIGPSLKDEVMKITPVQKQ 86
           EEEKWVP                            +QI+D LIGP+LKDEVMKI PVQKQ
Sbjct: 50  EEEKWVPVTKLGRLVAAGHIKQIEQIYLHSLPVKEYQIIDMLIGPTLKDEVMKIMPVQKQ 109

Query: 87  TRAGQRTRFKALVVVGDGNGHVGLGVKCSEEVATAIRGSIILAKLSFDPCEKRVLG---- 146
           TRAGQRTRFKA VVVGDGNGHVGLGVKCS+EVATAIRG+IILAKLS  P  +   G    
Sbjct: 110 TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIG 169

Query: 147 -----------------VRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGN 170
                            VRMVPAPRG+GIVAARVPKKVLQFAGI+DVFTSSRGSTKTLGN
Sbjct: 170 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGN 229

[Close]
BLAST of Carg01276 vs. Swiss-Prot
Match: sp|Q8L8Y0|RS21_ARATH (40S ribosomal protein S2-1 OS=Arabidopsis thaliana OX=3702 GN=RPS2A PE=2 SV=2)

HSP 1 Score: 217.6 bits (553), Expect = 1.0e-55
Identity = 116/157 (73.89%), Postives = 125/157 (79.62%), Query Frame = 0 

Query: 34  HQIVDTLIGPSLKDEVMKITPVQKQTRAGQRTRFKALVVVGDGNGHVGLGVKCSEEVATA 93
           +QI+D L+GP+LKDEVMKI PVQKQTRAGQRTRFKA VVVGDGNGHVGLGVKCS+EVATA
Sbjct: 84  YQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATA 143

Query: 94  IRGSIILAKLSFDPCEKRVLG---------------------VRMVPAPRGAGIVAARVP 153
           IRG+IILAKLS  P  +   G                     VRMVPAPRG+GIVAARVP
Sbjct: 144 IRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVP 203

Query: 154 KKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLLKT 170
           KKVLQFAGI+DVFTSSRGSTKTLGNFVKATFDCL KT
Sbjct: 204 KKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLQKT 240

[Close]
BLAST of Carg01276 vs. Swiss-Prot
Match: sp|Q93VB8|RS22_ARATH (40S ribosomal protein S2-2 OS=Arabidopsis thaliana OX=3702 GN=RPS2B PE=2 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 1.0e-55
Identity = 116/157 (73.89%), Postives = 125/157 (79.62%), Query Frame = 0 

Query: 34  HQIVDTLIGPSLKDEVMKITPVQKQTRAGQRTRFKALVVVGDGNGHVGLGVKCSEEVATA 93
           +QI+D L+GP+LKDEVMKI PVQKQTRAGQRTRFKA VVVGDGNGHVGLGVKCS+EVATA
Sbjct: 84  YQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATA 143

Query: 94  IRGSIILAKLSFDPCEKRVLG---------------------VRMVPAPRGAGIVAARVP 153
           IRG+IILAKLS  P  +   G                     VRMVPAPRG+GIVAARVP
Sbjct: 144 IRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVP 203

Query: 154 KKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLLKT 170
           KKVLQFAGI+DVFTSSRGSTKTLGNFVKATFDCL KT
Sbjct: 204 KKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLQKT 240

[Close]
BLAST of Carg01276 vs. Swiss-Prot
Match: sp|Q9SCM3|RS24_ARATH (40S ribosomal protein S2-4 OS=Arabidopsis thaliana OX=3702 GN=RPS2D PE=2 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 1.0e-55
Identity = 122/192 (63.54%), Postives = 131/192 (68.23%), Query Frame = 0 

Query: 27  EEEKWVP----------------------------HQIVDTLIGPSLKDEVMKITPVQKQ 86
           EEEKWVP                            +QI+D L+GPSLKDEVMKI PVQKQ
Sbjct: 41  EEEKWVPVTKLGRLVKEGKITKIEQIYLHSLPVKEYQIIDLLVGPSLKDEVMKIMPVQKQ 100

Query: 87  TRAGQRTRFKALVVVGDGNGHVGLGVKCSEEVATAIRGSIILAKLSFDPCEKRVLG---- 146
           TRAGQRTRFKA +VVGD NGHVGLGVKCS+EVATAIRG+IILAKLS  P  +   G    
Sbjct: 101 TRAGQRTRFKAFIVVGDSNGHVGLGVKCSKEVATAIRGAIILAKLSVVPIRRGYWGNKIG 160

Query: 147 -----------------VRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGN 170
                            VRMVPAPRG+GIVAARVPKKVLQFAGI+DVFTSSRGSTKTLGN
Sbjct: 161 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGN 220

[Close]
BLAST of Carg01276 vs. Swiss-Prot
Match: sp|O18789|RS2_BOVIN (40S ribosomal protein S2 OS=Bos taurus OX=9913 GN=RPS2 PE=2 SV=2)

HSP 1 Score: 180.3 bits (456), Expect = 1.8e-44
Identity = 95/156 (60.90%), Postives = 111/156 (71.15%), Query Frame = 0 

Query: 35  QIVDTLIGPSLKDEVMKITPVQKQTRAGQRTRFKALVVVGDGNGHVGLGVKCSEEVATAI 94
           +I+D  +G SLKDEV+KI PVQKQTRAGQRTRFKA V +GD NGHVGLGVKCS+EVATAI
Sbjct: 92  EIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAI 151

Query: 95  RGSIILAKLSFDPCEKRVLG---------------------VRMVPAPRGAGIVAARVPK 154
           RG+IILAKLS  P  +   G                     VR++PAPRG GIV+A VPK
Sbjct: 152 RGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPK 211

Query: 155 KVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLLKT 170
           K+L  AGI+D +TS+RG T TLGNF KATFD + KT
Sbjct: 212 KLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKT 247

[Close]
BLAST of Carg01276 vs. TrEMBL
Match: tr|A0A0B0N0L5|A0A0B0N0L5_GOSAR (40S ribosomal S2-2-like protein OS=Gossypium arboreum OX=29729 GN=F383_33646 PE=3 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 7.2e-62
Identity = 143/218 (65.60%), Postives = 151/218 (69.27%), Query Frame = 0 

Query: 3   ERGGFRRGFGGRGRGG--CRRAVRRDEEEKWVP--------------------------- 62
           ERG FRRGFGGR   G   RR  RR+EEEKWVP                           
Sbjct: 8   ERGAFRRGFGGRSDRGPRGRRRGRREEEEKWVPVTKLGRLVKTGKITSLEQIYLHSLPIK 67

Query: 63  -HQIVDTLIGPSLKDEVMKITPVQKQTRAGQRTRFKALVVVGDGNGHVGLGVKCSEEVAT 122
            +QI+D L+GPSLKDEVMKITPVQKQTRAGQRTRFKA VVVGDGNGHVGLGVKCS+EVAT
Sbjct: 68  EYQIIDQLVGPSLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVAT 127

Query: 123 AIRGSIILAKLSFDPCEKRVLG---------------------VRMVPAPRGAGIVAARV 170
           AIRG+IILAKLS  P  +   G                     VRMVPAPRGAGIVAARV
Sbjct: 128 AIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARV 187

[Close]
BLAST of Carg01276 vs. TrEMBL
Match: tr|A0A1U8HT40|A0A1U8HT40_GOSHI (40S ribosomal protein S2-4-like OS=Gossypium hirsutum OX=3635 GN=LOC107889330 PE=3 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 7.2e-62
Identity = 143/218 (65.60%), Postives = 151/218 (69.27%), Query Frame = 0 

Query: 3   ERGGFRRGFGGRGRGG--CRRAVRRDEEEKWVP--------------------------- 62
           ERG FRRGFGGR   G   RR  RR+EEEKWVP                           
Sbjct: 8   ERGAFRRGFGGRSDRGPRGRRRGRREEEEKWVPVTKLGRLVKTGKITSLEQIYLHSLPIK 67

Query: 63  -HQIVDTLIGPSLKDEVMKITPVQKQTRAGQRTRFKALVVVGDGNGHVGLGVKCSEEVAT 122
            +QI+D L+GPSLKDEVMKITPVQKQTRAGQRTRFKA VVVGDGNGHVGLGVKCS+EVAT
Sbjct: 68  EYQIIDQLVGPSLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVAT 127

Query: 123 AIRGSIILAKLSFDPCEKRVLG---------------------VRMVPAPRGAGIVAARV 170
           AIRG+IILAKLS  P  +   G                     VRMVPAPRGAGIVAARV
Sbjct: 128 AIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARV 187

[Close]
BLAST of Carg01276 vs. TrEMBL
Match: tr|A0A2P5YAE8|A0A2P5YAE8_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA08079 PE=3 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 7.2e-62
Identity = 143/218 (65.60%), Postives = 151/218 (69.27%), Query Frame = 0 

Query: 3   ERGGFRRGFGGRGRGG--CRRAVRRDEEEKWVP--------------------------- 62
           ERG FRRGFGGR   G   RR  RR+EEEKWVP                           
Sbjct: 8   ERGAFRRGFGGRSDRGPRGRRRGRREEEEKWVPVTKLGRLVKTGKITSLEQIYLHSLPIK 67

Query: 63  -HQIVDTLIGPSLKDEVMKITPVQKQTRAGQRTRFKALVVVGDGNGHVGLGVKCSEEVAT 122
            +QI+D L+GPSLKDEVMKITPVQKQTRAGQRTRFKA VVVGDGNGHVGLGVKCS+EVAT
Sbjct: 68  EYQIIDQLVGPSLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVAT 127

Query: 123 AIRGSIILAKLSFDPCEKRVLG---------------------VRMVPAPRGAGIVAARV 170
           AIRG+IILAKLS  P  +   G                     VRMVPAPRGAGIVAARV
Sbjct: 128 AIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARV 187

[Close]
BLAST of Carg01276 vs. TrEMBL
Match: tr|A0A1U8I660|A0A1U8I660_GOSHI (40S ribosomal protein S2-4-like OS=Gossypium hirsutum OX=3635 GN=LOC107891409 PE=3 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 1.6e-61
Identity = 142/218 (65.14%), Postives = 151/218 (69.27%), Query Frame = 0 

Query: 3   ERGGFRRGFGGRGRGG--CRRAVRRDEEEKWVP--------------------------- 62
           ERG FRRGFGGR   G   RR  RR+EEEKWVP                           
Sbjct: 8   ERGAFRRGFGGRSDRGPRGRRRGRREEEEKWVPVTKLGRLVKTGKITSLEQIYLHSLPIK 67

Query: 63  -HQIVDTLIGPSLKDEVMKITPVQKQTRAGQRTRFKALVVVGDGNGHVGLGVKCSEEVAT 122
            +QI+D L+GPSLKDEVMKITPVQKQTRAGQRTRFKA VVVGDGNGHVGLGVKCS+EVAT
Sbjct: 68  EYQIIDQLVGPSLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVAT 127

Query: 123 AIRGSIILAKLSFDPCEKRVLG---------------------VRMVPAPRGAGIVAARV 170
           AIRG+IILAKLS  P  +   G                     VRMVPAPRGAGIVAARV
Sbjct: 128 AIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARV 187

[Close]
BLAST of Carg01276 vs. TrEMBL
Match: tr|A0A0D2Q8Z1|A0A0D2Q8Z1_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_006G128000 PE=3 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 1.6e-61
Identity = 142/218 (65.14%), Postives = 151/218 (69.27%), Query Frame = 0 

Query: 3   ERGGFRRGFGGRGRGG--CRRAVRRDEEEKWVP--------------------------- 62
           ERG FRRGFGGR   G   RR  RR+EEEKWVP                           
Sbjct: 8   ERGAFRRGFGGRSDRGPRGRRRGRREEEEKWVPVTKLGRLVKTGKITSLEQIYLHSLPIK 67

Query: 63  -HQIVDTLIGPSLKDEVMKITPVQKQTRAGQRTRFKALVVVGDGNGHVGLGVKCSEEVAT 122
            +QI+D L+GPSLKDEVMKITPVQKQTRAGQRTRFKA VVVGDGNGHVGLGVKCS+EVAT
Sbjct: 68  EYQIIDQLVGPSLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVAT 127

Query: 123 AIRGSIILAKLSFDPCEKRVLG---------------------VRMVPAPRGAGIVAARV 170
           AIRG+IILAKLS  P  +   G                     VRMVPAPRGAGIVAARV
Sbjct: 128 AIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARV 187

The following BLAST results are available for this feature:
BLAST of Carg01276 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_021278533.16.4e-6266.0640S ribosomal protein S2-4-like [Herrania umbratica][more]
XP_021279298.16.4e-6266.0640S ribosomal protein S2-4-like [Herrania umbratica][more]
XP_022722903.16.4e-6266.0640S ribosomal protein S2-4-like [Durio zibethinus][more]
XP_017611355.11.1e-6165.60PREDICTED: 40S ribosomal protein S2-4-like [Gossypium arboreum] >KHG06565.1 40S ... [more]
XP_016669195.11.1e-6165.60PREDICTED: 40S ribosomal protein S2-4-like [Gossypium hirsutum][more]
BLAST of Carg01276 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G41840.11.5e-5764.58Ribosomal protein S5 family protein[more]
AT1G58983.15.8e-5773.89Ribosomal protein S5 family protein[more]
AT1G59359.15.8e-5773.89Ribosomal protein S5 family protein[more]
AT1G58380.15.8e-5773.89Ribosomal protein S5 family protein[more]
AT1G58684.15.8e-5773.89Ribosomal protein S5 family protein[more]
BLAST of Carg01276 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P49688|RS23_ARATH2.7e-5664.5840S ribosomal protein S2-3 OS=Arabidopsis thaliana OX=3702 GN=RPS2C PE=1 SV=2[more]
sp|Q8L8Y0|RS21_ARATH1.0e-5573.8940S ribosomal protein S2-1 OS=Arabidopsis thaliana OX=3702 GN=RPS2A PE=2 SV=2[more]
sp|Q93VB8|RS22_ARATH1.0e-5573.8940S ribosomal protein S2-2 OS=Arabidopsis thaliana OX=3702 GN=RPS2B PE=2 SV=1[more]
sp|Q9SCM3|RS24_ARATH1.0e-5563.5440S ribosomal protein S2-4 OS=Arabidopsis thaliana OX=3702 GN=RPS2D PE=2 SV=1[more]
sp|O18789|RS2_BOVIN1.8e-4460.9040S ribosomal protein S2 OS=Bos taurus OX=9913 GN=RPS2 PE=2 SV=2[more]
BLAST of Carg01276 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0B0N0L5|A0A0B0N0L5_GOSAR7.2e-6265.6040S ribosomal S2-2-like protein OS=Gossypium arboreum OX=29729 GN=F383_33646 PE=... [more]
tr|A0A1U8HT40|A0A1U8HT40_GOSHI7.2e-6265.6040S ribosomal protein S2-4-like OS=Gossypium hirsutum OX=3635 GN=LOC107889330 PE... [more]
tr|A0A2P5YAE8|A0A2P5YAE8_GOSBA7.2e-6265.60Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA08079 PE=3 SV... [more]
tr|A0A1U8I660|A0A1U8I660_GOSHI1.6e-6165.1440S ribosomal protein S2-4-like OS=Gossypium hirsutum OX=3635 GN=LOC107891409 PE... [more]
tr|A0A0D2Q8Z1|A0A0D2Q8Z1_GOSRA1.6e-6165.14Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_006G128000 PE=3 ... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: INTERPRO
TermDefinition
IPR020568Ribosomal_S5_D2-typ_fold
IPR018192Ribosomal_S5_N_CS
IPR000851Ribosomal_S5
IPR013810Ribosomal_S5_N
IPR014721Ribosomal_S5_D2-typ_fold_subgr
IPR005324Ribosomal_S5_C
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg01276-RACarg01276-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005324Ribosomal protein S5, C-terminalPFAMPF03719Ribosomal_S5_Ccoord: 115..169
e-value: 6.3E-20
score: 70.3
IPR014721Ribosomal protein S5 domain 2-type fold, subgroupGENE3DG3DSA:3.30.230.10coord: 108..169
e-value: 1.2E-24
score: 88.2
NoneNo IPR availableGENE3DG3DSA:3.30.160.770coord: 30..107
e-value: 3.4E-32
score: 112.8
NoneNo IPR availablePANTHERPTHR13718:SF79SUBFAMILY NOT NAMEDcoord: 34..110
NoneNo IPR availablePANTHERPTHR13718:SF79SUBFAMILY NOT NAMEDcoord: 2..33
NoneNo IPR availablePANTHERPTHR13718:SF79SUBFAMILY NOT NAMEDcoord: 113..169
NoneNo IPR availableSUPERFAMILYSSF54768dsRNA-binding domain-likecoord: 41..106
IPR013810Ribosomal protein S5, N-terminalPFAMPF00333Ribosomal_S5coord: 45..105
e-value: 4.8E-29
score: 100.0
IPR013810Ribosomal protein S5, N-terminalPROSITEPS50881S5_DSRBDcoord: 45..108
score: 21.079
IPR000851Ribosomal protein S5PANTHERPTHR13718RIBOSOMAL S SUBUNITcoord: 113..169
IPR000851Ribosomal protein S5PANTHERPTHR13718RIBOSOMAL S SUBUNITcoord: 34..110
coord: 2..33
IPR018192Ribosomal protein S5, N-terminal, conserved sitePROSITEPS00585RIBOSOMAL_S5coord: 62..94
IPR020568Ribosomal protein S5 domain 2-type foldSUPERFAMILYSSF54211Ribosomal protein S5 domain 2-likecoord: 115..168