Cp4.1LG08g09370 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG08g09370
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
Description40S ribosomal protein S5
LocationCp4.1LG08 : 7334458 .. 7336921 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCCCTCTCCACCCTAGCCGCCGATCCGAGCTTTTGCCCTCCTGGTTTTCATTTGCTCGTCTCCCTTCCAAGTAAGTTTCTTCTTAATCACTCTCCAATCTACTTCTTCGTCTCCTTATCTCCGCCGTAAATGTCGTCGATCGCTGTGTTTTTCCGTCTTGGTTTCTCTTTTCTGTGGAAAATTGCTTTTGTTTCTGCTTTGCGGTAATGGCTCTTGCAGTTTAGCCCTAGGGTTTTAGTGCAGGTGTCTTTTTTCTGATTGCTCTCTGAACTATGTACCATTATTGATTTAAATCTCTTTTTTTTTTGTTTATTTAGTTGAGTGGTTGTGTTGTTATTGTTATTTGGATGTTTTTGTACTGTTGATTATCAAATGTAGCTAAGATTTAAGGATTTAAGGATTCAGACGTTCCATTTTTAATCTACTTTAGCTTGAGGTTTCTGTGTCTCTTCTTGGTATTGATGTTTGCACGAACTCTTAGATTGGGAATGATTTTGTTCGTCTTCTTTCTTTGGGAGCTGCATTCTGTTCGCTTTATTCTTTAGGATTAGGATTTATCAGAACACTAGTGAGCTTTGGTTCTATTTCTCCTGTTAAATCTGACTTATGGCTTTGTTTTCATAGAAATGGCTGAAGCGGTCGAAGTGGTTCAGGAACTTATCCAACCTCACCATGACGTGAAACTTTTCAATCGCTGGACCTTTGATGATGTCCAGGTTTCAACTTTCTTTCCCAATGCGCTGTTTCTTAGACTGATGTTTGTGGGATGCAATTTTGGGTTAAATTTAACATTGCGTATGATGGAAGAAAAAAACTTTTACTATTGGTGGATTCATTTCACTCACGTTGATTTCATTGTCTTCTGTGTTATAAATGAGATTAAAGTCTGAGAACAACTTTTTGCTAATCTGTCTTAGATGGCTATTATGTGAAGGTGTTGGTGATTACAATTATTTTCTGTAGAAGTGTTGTTGTTGGGTTCTAACCAATCTGCTTGAAGTTGGTTGGTTCGCTGAAAACTCTACGCCATTGAGTTATGATTGTTACTATCGGTGGGTTTATTCAGGTTAATGACATGTCTCTGGGGGATTACATTGGAGTTGCACCTTCCAAGCATGCAACCTATGTTCCACACACTGCTGGCCGATACTCTATGAAGCGTTTCAGGAAAGCTCAATGCCCAATTGTTGAGAGACTTACTAACTCACTTATGATGCACGGCAGAAACAATGGGAAGAAACTAATGGCTGTGAGGATTATTAAGCACACCATGGAGATTATCCATCTGCTAACTGATCTAAATCCAATTCAAGTTATTGTCGATGCTGTTGTTAACAGGTATGCATATTTGATCCACTGAATTTCTCTCATGTCGCATGTTAGCTGTGTGCTATGTCGTTACAATATTGACAAATACTTTTCATGTGGTGATTTTCTACATGGGTAAATGTGATTAGTTTATTGTATTGGAGTTTGAAGTTAATTTAAAAGATAGTAAATTCGCGAAAATTTATGAGGTTTAACAAGATCATGTCAATAAAATTGAAACTAAGACCAAACCATGAAGATTAAATTGGATATTTTTCAACCGTAGGAACCAAGTTTTATAATTTAACCTGACTTTTACTATAATGTAGATGTTCATTCCTCTGTTTTTAGAAGAAATTTGGTACGTGATTTATTGGATGACTTCCTGATTAGTATTATATCGAGGTCAATGACCTGAATAAAGATCGCGGTCATGCTGCAATGTTCGCTGCAATGTTTGAGTTACGAATGTCTCTTTAACAATTTTTGGACATGGGACTTTGCAGTGGACCCCGAGAAGATGCCACGCGAATTGGTTCAGCTGGTGTTGTTAGGCGTCAAGCTGTGGATATATCCCCTCTGCGACGTGTAAATCAAGCAATATACCTTCTTACAACTGGTGCTCGTGAGGCTGCTTTCAGAAACATCAAGACAATCGCAGAATGTTTGGCTGATGAACTCATCAACGCCGCAAAGGGCTCATCAAACAGGTACATATTACAACATCTCGTACTAAATTATCATCCATCCACCCTTGCACAGTATGTCATTGCGTTTTTTCTATTCTTGCAGTTACGCTATTAAGAAAAAGGATGAGATTGAGAGAGTTGCCAAGGCCAATCGTTAAGAAGGGCAGTTGGGGAAAAGAGAGAGCTCAAAGGTTCGACAAGAGCTTCGTTTTTGTTCTTTGCCAATGCTCATCTGACATTCTTCTAGTTCTAAGTTTCTGTAGACATGGTTGACTTCAACGTTTTGTTTCTTTTGAATTCATCCAATACTTTATTAAGCTTTAAGGTGTCCTCGTATGGCTGCATGTGTTTTAGACCATGATTTTGTAAACAGTTGAGAATTTATCAGAATATTTTTAAGAATTTAATGTTTTATTTGATGGATGGTTTTTATAAGTTATTAATTCTCTCATTATTATCCTCAAAAC

mRNA sequence

CCCCTCTCCACCCTAGCCGCCGATCCGAGCTTTTGCCCTCCTGGTTTTCATTTGCTCGTCTCCCTTCCAAAAATGGCTGAAGCGGTCGAAGTGGTTCAGGAACTTATCCAACCTCACCATGACGTGAAACTTTTCAATCGCTGGACCTTTGATGATGTCCAGGTTAATGACATGTCTCTGGGGGATTACATTGGAGTTGCACCTTCCAAGCATGCAACCTATGTTCCACACACTGCTGGCCGATACTCTATGAAGCGTTTCAGGAAAGCTCAATGCCCAATTGTTGAGAGACTTACTAACTCACTTATGATGCACGGCAGAAACAATGGGAAGAAACTAATGGCTGTGAGGATTATTAAGCACACCATGGAGATTATCCATCTGCTAACTGATCTAAATCCAATTCAAGTTATTGTCGATGCTGTTGTTAACAGTGGACCCCGAGAAGATGCCACGCGAATTGGTTCAGCTGGTGTTGTTAGGCGTCAAGCTGTGGATATATCCCCTCTGCGACGTGTAAATCAAGCAATATACCTTCTTACAACTGGTGCTCGTGAGGCTGCTTTCAGAAACATCAAGACAATCGCAGAATGTTTGGCTGATGAACTCATCAACGCCGCAAAGGGCTCATCAAACAGTTACGCTATTAAGAAAAAGGATGAGATTGAGAGAGTTGCCAAGGCCAATCGTTAAGAAGGGCAGTTGGGGAAAAGAGAGAGCTCAAAGGTTCGACAAGAGCTTCGTTTTTGTTCTTTGCCAATGCTCATCTGACATTCTTCTAGTTCTAAGTTTCTGTAGACATGGTTGACTTCAACGTTTTGTTTCTTTTGAATTCATCCAATACTTTATTAAGCTTTAAGGTGTCCTCGTATGGCTGCATGTGTTTTAGACCATGATTTTGTAAACAGTTGAGAATTTATCAGAATATTTTTAAGAATTTAATGTTTTATTTGATGGATGGTTTTTATAAGTTATTAATTCTCTCATTATTATCCTCAAAAC

Coding sequence (CDS)

ATGGCTGAAGCGGTCGAAGTGGTTCAGGAACTTATCCAACCTCACCATGACGTGAAACTTTTCAATCGCTGGACCTTTGATGATGTCCAGGTTAATGACATGTCTCTGGGGGATTACATTGGAGTTGCACCTTCCAAGCATGCAACCTATGTTCCACACACTGCTGGCCGATACTCTATGAAGCGTTTCAGGAAAGCTCAATGCCCAATTGTTGAGAGACTTACTAACTCACTTATGATGCACGGCAGAAACAATGGGAAGAAACTAATGGCTGTGAGGATTATTAAGCACACCATGGAGATTATCCATCTGCTAACTGATCTAAATCCAATTCAAGTTATTGTCGATGCTGTTGTTAACAGTGGACCCCGAGAAGATGCCACGCGAATTGGTTCAGCTGGTGTTGTTAGGCGTCAAGCTGTGGATATATCCCCTCTGCGACGTGTAAATCAAGCAATATACCTTCTTACAACTGGTGCTCGTGAGGCTGCTTTCAGAAACATCAAGACAATCGCAGAATGTTTGGCTGATGAACTCATCAACGCCGCAAAGGGCTCATCAAACAGTTACGCTATTAAGAAAAAGGATGAGATTGAGAGAGTTGCCAAGGCCAATCGTTAA

Protein sequence

MAEAVEVVQELIQPHHDVKLFNRWTFDDVQVNDMSLGDYIGVAPSKHATYVPHTAGRYSMKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHTMEIIHLLTDLNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR
Homology
[Close]
BLAST of Cp4.1LG08g09370 vs. Swiss-Prot
Match: RS51_ARATH (40S ribosomal protein S5-1 OS=Arabidopsis thaliana GN=RPS5A PE=1 SV=1)

HSP 1 Score: 351.7 bits (901), Expect = 5.6e-96
Identity = 180/207 (86.96%), Postives = 194/207 (93.72%), Query Frame = 1 

Query: 1   MAEAVEVVQELIQP-HHDVKLFNRWTFDDVQVNDMSLGDYIGVAPSKHATYVPHTAGRYS 60
           MA + E+  E+ Q   ++VKLFNRW+FDDV V D+SL DYIGV PSKHAT+VPHTAGRYS
Sbjct: 1   MAASAEIDAEIQQQLTNEVKLFNRWSFDDVSVTDISLVDYIGVQPSKHATFVPHTAGRYS 60

Query: 61  MKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHTMEIIHLLTDLNPIQVIVDAVV 120
           +KRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRI+KH MEIIHLL+DLNPIQVI+DA+V
Sbjct: 61  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIV 120

Query: 121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 180
           NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAI+LLTTGAREAAFRNIKTIAECLADEL
Sbjct: 121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIFLLTTGAREAAFRNIKTIAECLADEL 180

Query: 181 INAAKGSSNSYAIKKKDEIERVAKANR 207
           INAAKGSSNSYAIKKKDEIERVAKANR
Sbjct: 181 INAAKGSSNSYAIKKKDEIERVAKANR 207

[Close]
BLAST of Cp4.1LG08g09370 vs. Swiss-Prot
Match: RS5_CICAR (40S ribosomal protein S5 (Fragment) OS=Cicer arietinum GN=RPS5 PE=2 SV=1)

HSP 1 Score: 351.7 bits (901), Expect = 5.6e-96
Identity = 179/190 (94.21%), Postives = 186/190 (97.89%), Query Frame = 1 

Query: 17  DVKLFNRWTFDDVQVNDMSLGDYIGVAPSKHATYVPHTAGRYSMKRFRKAQCPIVERLTN 76
           +VKLFNRW+FDDVQ++D+SL DYIGV PSKHATYVPHTAGRYS+KRFRKAQCPIVERLTN
Sbjct: 8   EVKLFNRWSFDDVQLSDVSLIDYIGVVPSKHATYVPHTAGRYSVKRFRKAQCPIVERLTN 67

Query: 77  SLMMHGRNNGKKLMAVRIIKHTMEIIHLLTDLNPIQVIVDAVVNSGPREDATRIGSAGVV 136
           SLMMHGRNNGKKLMAVRIIKH MEIIHLLTD NPIQVIVDAVVNSGPREDATRIGSAGVV
Sbjct: 68  SLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDQNPIQVIVDAVVNSGPREDATRIGSAGVV 127

Query: 137 RRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKD 196
           RRQAVDISPLRRVNQAIYLLTTGAREAAFRNIK+IAECLADELINAAKGSSNSYAIKKKD
Sbjct: 128 RRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKSIAECLADELINAAKGSSNSYAIKKKD 187

Query: 197 EIERVAKANR 207
           EIERVAKANR
Sbjct: 188 EIERVAKANR 197

[Close]
BLAST of Cp4.1LG08g09370 vs. Swiss-Prot
Match: RS52_ARATH (40S ribosomal protein S5-2 OS=Arabidopsis thaliana GN=RPS5B PE=1 SV=2)

HSP 1 Score: 347.1 bits (889), Expect = 1.4e-94
Identity = 178/207 (85.99%), Postives = 193/207 (93.24%), Query Frame = 1 

Query: 1   MAEAVEVVQELIQP-HHDVKLFNRWTFDDVQVNDMSLGDYIGVAPSKHATYVPHTAGRYS 60
           MA A +V  E+ Q   ++VKLFNRWT+DDV V D+SL DYIGV  +KHAT+VPHTAGRYS
Sbjct: 1   MATAADVDAEIQQALTNEVKLFNRWTYDDVTVTDISLVDYIGVQAAKHATFVPHTAGRYS 60

Query: 61  MKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHTMEIIHLLTDLNPIQVIVDAVV 120
           +KRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRI+KH MEIIHLL+DLNPIQVI+DA+V
Sbjct: 61  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIV 120

Query: 121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 180
           NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAI+L+TTGAREAAFRNIKTIAECLADEL
Sbjct: 121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIFLITTGAREAAFRNIKTIAECLADEL 180

Query: 181 INAAKGSSNSYAIKKKDEIERVAKANR 207
           INAAKGSSNSYAIKKKDEIERVAKANR
Sbjct: 181 INAAKGSSNSYAIKKKDEIERVAKANR 207

[Close]
BLAST of Cp4.1LG08g09370 vs. Swiss-Prot
Match: RS5_HUMAN (40S ribosomal protein S5 OS=Homo sapiens GN=RPS5 PE=1 SV=4)

HSP 1 Score: 307.4 bits (786), Expect = 1.2e-82
Identity = 152/190 (80.00%), Postives = 173/190 (91.05%), Query Frame = 1 

Query: 17  DVKLFNRWTFDDVQVNDMSLGDYIGVAPSKHATYVPHTAGRYSMKRFRKAQCPIVERLTN 76
           D+KLF +W+ DDVQ+ND+SL DYI V   K+A Y+PH+AGRY+ KRFRKAQCPIVERLTN
Sbjct: 16  DIKLFGKWSTDDVQINDISLQDYIAVK-EKYAKYLPHSAGRYAAKRFRKAQCPIVERLTN 75

Query: 77  SLMMHGRNNGKKLMAVRIIKHTMEIIHLLTDLNPIQVIVDAVVNSGPREDATRIGSAGVV 136
           S+MMHGRNNGKKLM VRI+KH  EIIHLLT  NP+QV+V+A++NSGPRED+TRIG AG V
Sbjct: 76  SMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTV 135

Query: 137 RRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKD 196
           RRQAVD+SPLRRVNQAI+LL TGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKD
Sbjct: 136 RRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKD 195

Query: 197 EIERVAKANR 207
           E+ERVAK+NR
Sbjct: 196 ELERVAKSNR 204

[Close]
BLAST of Cp4.1LG08g09370 vs. Swiss-Prot
Match: RS5_BOVIN (40S ribosomal protein S5 OS=Bos taurus GN=RPS5 PE=2 SV=3)

HSP 1 Score: 307.4 bits (786), Expect = 1.2e-82
Identity = 152/190 (80.00%), Postives = 173/190 (91.05%), Query Frame = 1 

Query: 17  DVKLFNRWTFDDVQVNDMSLGDYIGVAPSKHATYVPHTAGRYSMKRFRKAQCPIVERLTN 76
           D+KLF +W+ DDVQ+ND+SL DYI V   K+A Y+PH+AGRY+ KRFRKAQCPIVERLTN
Sbjct: 16  DIKLFGKWSTDDVQINDISLQDYIAVK-EKYAKYLPHSAGRYAAKRFRKAQCPIVERLTN 75

Query: 77  SLMMHGRNNGKKLMAVRIIKHTMEIIHLLTDLNPIQVIVDAVVNSGPREDATRIGSAGVV 136
           S+MMHGRNNGKKLM VRI+KH  EIIHLLT  NP+QV+V+A++NSGPRED+TRIG AG V
Sbjct: 76  SMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTV 135

Query: 137 RRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKD 196
           RRQAVD+SPLRRVNQAI+LL TGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKD
Sbjct: 136 RRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKD 195

Query: 197 EIERVAKANR 207
           E+ERVAK+NR
Sbjct: 196 ELERVAKSNR 204

[Close]
BLAST of Cp4.1LG08g09370 vs. TrEMBL
Match: A0A0A0KSZ1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G292230 PE=3 SV=1)

HSP 1 Score: 382.5 bits (981), Expect = 3.3e-103
Identity = 196/207 (94.69%), Postives = 202/207 (97.58%), Query Frame = 1 

Query: 1   MAEAVEVV-QELIQPHHDVKLFNRWTFDDVQVNDMSLGDYIGVAPSKHATYVPHTAGRYS 60
           MA  V+VV QELIQPHHDVKLFNRWTFDDVQVND+SL DY+GVAP+KHATYVPHTAGRYS
Sbjct: 1   MAVEVDVVNQELIQPHHDVKLFNRWTFDDVQVNDISLVDYVGVAPAKHATYVPHTAGRYS 60

Query: 61  MKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHTMEIIHLLTDLNPIQVIVDAVV 120
           +KRFRKAQCPI+ERLTNSLMMHGRNNGKKLMAVRIIKH MEIIHLLTDLNPIQVIVDAVV
Sbjct: 61  VKRFRKAQCPIIERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 120

Query: 121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 180
           NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL
Sbjct: 121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 180

Query: 181 INAAKGSSNSYAIKKKDEIERVAKANR 207
           INAAKGSSNSYAIKKKDEIERVAKANR
Sbjct: 181 INAAKGSSNSYAIKKKDEIERVAKANR 207

[Close]
BLAST of Cp4.1LG08g09370 vs. TrEMBL
Match: A0A0A0K5K0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G232530 PE=3 SV=1)

HSP 1 Score: 377.1 bits (967), Expect = 1.4e-101
Identity = 193/207 (93.24%), Postives = 200/207 (96.62%), Query Frame = 1 

Query: 1   MAEAVEVV-QELIQPHHDVKLFNRWTFDDVQVNDMSLGDYIGVAPSKHATYVPHTAGRYS 60
           MA  ++VV QEL Q HHDVKLFNRWTFDDVQVND+SL DY+GVAP+KHATYVPHTAGRYS
Sbjct: 1   MAVEIDVVNQELTQSHHDVKLFNRWTFDDVQVNDISLVDYVGVAPAKHATYVPHTAGRYS 60

Query: 61  MKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHTMEIIHLLTDLNPIQVIVDAVV 120
           +KRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKH MEIIHLLTDLNP+QVIVDAVV
Sbjct: 61  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPVQVIVDAVV 120

Query: 121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 180
           NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL
Sbjct: 121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 180

Query: 181 INAAKGSSNSYAIKKKDEIERVAKANR 207
           INAAKGSSNSYAIKKKDEIERVAKANR
Sbjct: 181 INAAKGSSNSYAIKKKDEIERVAKANR 207

[Close]
BLAST of Cp4.1LG08g09370 vs. TrEMBL
Match: A0A0A0LRZ5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G373440 PE=3 SV=1)

HSP 1 Score: 374.8 bits (961), Expect = 6.8e-101
Identity = 193/207 (93.24%), Postives = 199/207 (96.14%), Query Frame = 1 

Query: 1   MAEAVEVV-QELIQPHHDVKLFNRWTFDDVQVNDMSLGDYIGVAPSKHATYVPHTAGRYS 60
           MA  V+VV QEL  PHHDVKLFNRWTFDDVQVND+SL DY+GVAP+KHATYVPHTAGRYS
Sbjct: 78  MAVEVDVVNQELTLPHHDVKLFNRWTFDDVQVNDISLVDYVGVAPAKHATYVPHTAGRYS 137

Query: 61  MKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHTMEIIHLLTDLNPIQVIVDAVV 120
           +KRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKH MEIIHLLTDLN +QVIVDAVV
Sbjct: 138 VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNTVQVIVDAVV 197

Query: 121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 180
           NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL
Sbjct: 198 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 257

Query: 181 INAAKGSSNSYAIKKKDEIERVAKANR 207
           INAAKGSSNSYAIKKKDEIERVAKANR
Sbjct: 258 INAAKGSSNSYAIKKKDEIERVAKANR 284

[Close]
BLAST of Cp4.1LG08g09370 vs. TrEMBL
Match: A0A0A0LVI4_CUCSA (40S ribosomal protein S5 OS=Cucumis sativus GN=Csa_1G168900 PE=4 SV=1)

HSP 1 Score: 374.0 bits (959), Expect = 1.2e-100
Identity = 193/207 (93.24%), Postives = 198/207 (95.65%), Query Frame = 1 

Query: 1   MAEAVEVV-QELIQPHHDVKLFNRWTFDDVQVNDMSLGDYIGVAPSKHATYVPHTAGRYS 60
           MA  V+V  QEL Q HHDVKLFNRWTFDDVQVND+SL DY+GVAP+KHATYVPHTAGRYS
Sbjct: 1   MAVEVDVASQELTQSHHDVKLFNRWTFDDVQVNDISLVDYVGVAPAKHATYVPHTAGRYS 60

Query: 61  MKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHTMEIIHLLTDLNPIQVIVDAVV 120
           +KRFRKAQCPIVER TNSLMMHGRNNGKKLMAVRIIKH MEIIHLLTDLNPIQVIVDAVV
Sbjct: 61  VKRFRKAQCPIVERRTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 120

Query: 121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 180
           NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL
Sbjct: 121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 180

Query: 181 INAAKGSSNSYAIKKKDEIERVAKANR 207
           INAAKGSSNSYAIKKKDEIERVAKANR
Sbjct: 181 INAAKGSSNSYAIKKKDEIERVAKANR 207

[Close]
BLAST of Cp4.1LG08g09370 vs. TrEMBL
Match: W9RQK6_9ROSA (40S ribosomal protein S5 OS=Morus notabilis GN=L484_012437 PE=3 SV=1)

HSP 1 Score: 367.5 bits (942), Expect = 1.1e-98
Identity = 185/199 (92.96%), Postives = 193/199 (96.98%), Query Frame = 1 

Query: 8   VQELIQPHHDVKLFNRWTFDDVQVNDMSLGDYIGVAPSKHATYVPHTAGRYSMKRFRKAQ 67
           VQ+  QPH DVKLFNRW+FDDVQVND+SL DYIGV P+KHATYVPHTAGRYS+KRFRKAQ
Sbjct: 6   VQDPSQPHFDVKLFNRWSFDDVQVNDISLADYIGVVPAKHATYVPHTAGRYSVKRFRKAQ 65

Query: 68  CPIVERLTNSLMMHGRNNGKKLMAVRIIKHTMEIIHLLTDLNPIQVIVDAVVNSGPREDA 127
           CPIVERLTNSLMMHGRNNGKKLMAVRI++H MEIIHLLTDLNPIQVIVDAVVNSGPREDA
Sbjct: 66  CPIVERLTNSLMMHGRNNGKKLMAVRIVRHAMEIIHLLTDLNPIQVIVDAVVNSGPREDA 125

Query: 128 TRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSS 187
           TRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARE+AFRNIKTIAECLADELINAAKGSS
Sbjct: 126 TRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSS 185

Query: 188 NSYAIKKKDEIERVAKANR 207
           NSYAIKKKDEIERVAKANR
Sbjct: 186 NSYAIKKKDEIERVAKANR 204

[Close]
BLAST of Cp4.1LG08g09370 vs. TAIR10
Match: AT2G37270.1 (AT2G37270.1 ribosomal protein 5B)

HSP 1 Score: 351.7 bits (901), Expect = 3.1e-97
Identity = 180/207 (86.96%), Postives = 194/207 (93.72%), Query Frame = 1 

Query: 1   MAEAVEVVQELIQP-HHDVKLFNRWTFDDVQVNDMSLGDYIGVAPSKHATYVPHTAGRYS 60
           MA + E+  E+ Q   ++VKLFNRW+FDDV V D+SL DYIGV PSKHAT+VPHTAGRYS
Sbjct: 1   MAASAEIDAEIQQQLTNEVKLFNRWSFDDVSVTDISLVDYIGVQPSKHATFVPHTAGRYS 60

Query: 61  MKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHTMEIIHLLTDLNPIQVIVDAVV 120
           +KRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRI+KH MEIIHLL+DLNPIQVI+DA+V
Sbjct: 61  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIV 120

Query: 121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 180
           NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAI+LLTTGAREAAFRNIKTIAECLADEL
Sbjct: 121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIFLLTTGAREAAFRNIKTIAECLADEL 180

Query: 181 INAAKGSSNSYAIKKKDEIERVAKANR 207
           INAAKGSSNSYAIKKKDEIERVAKANR
Sbjct: 181 INAAKGSSNSYAIKKKDEIERVAKANR 207

[Close]
BLAST of Cp4.1LG08g09370 vs. TAIR10
Match: AT3G11940.1 (AT3G11940.1 ribosomal protein 5A)

HSP 1 Score: 347.1 bits (889), Expect = 7.7e-96
Identity = 178/207 (85.99%), Postives = 193/207 (93.24%), Query Frame = 1 

Query: 1   MAEAVEVVQELIQP-HHDVKLFNRWTFDDVQVNDMSLGDYIGVAPSKHATYVPHTAGRYS 60
           MA A +V  E+ Q   ++VKLFNRWT+DDV V D+SL DYIGV  +KHAT+VPHTAGRYS
Sbjct: 1   MATAADVDAEIQQALTNEVKLFNRWTYDDVTVTDISLVDYIGVQAAKHATFVPHTAGRYS 60

Query: 61  MKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHTMEIIHLLTDLNPIQVIVDAVV 120
           +KRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRI+KH MEIIHLL+DLNPIQVI+DA+V
Sbjct: 61  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIV 120

Query: 121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 180
           NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAI+L+TTGAREAAFRNIKTIAECLADEL
Sbjct: 121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIFLITTGAREAAFRNIKTIAECLADEL 180

Query: 181 INAAKGSSNSYAIKKKDEIERVAKANR 207
           INAAKGSSNSYAIKKKDEIERVAKANR
Sbjct: 181 INAAKGSSNSYAIKKKDEIERVAKANR 207

[Close]
BLAST of Cp4.1LG08g09370 vs. TAIR10
Match: ATCG01240.1 (ATCG01240.1 ribosomal protein S7)

HSP 1 Score: 54.3 bits (129), Expect = 1.0e-07
Identity = 47/136 (34.56%), Postives = 73/136 (53.68%), Query Frame = 1 

Query: 73  RLTNSLMMHGRNNGKKLMAVRIIKHTMEIIHLLTDLNPIQVIVDAVVNSGP--REDATRI 132
           RL N L+     +GKK +A +II   ++ I   T+ NP+ V+  A+    P     A R+
Sbjct: 21  RLVNMLVNRILKHGKKSLAYQIIYRALKKIQQKTETNPLSVLRQAIRGVTPDIAVKARRV 80

Query: 133 GSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSY 192
           G  G   +  ++I   +    AI  L   +R+   RN   +A  L+ EL++AAKGS +  
Sbjct: 81  G--GSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRN---MAFKLSSELVDAAKGSGD-- 140

Query: 193 AIKKKDEIERVAKANR 207
           AI+KK+E  R+A+ANR
Sbjct: 141 AIRKKEETHRMAEANR 149

[Close]
BLAST of Cp4.1LG08g09370 vs. TAIR10
Match: ATCG00900.1 (ATCG00900.1 Ribosomal protein S7p/S5e family protein)

HSP 1 Score: 54.3 bits (129), Expect = 1.0e-07
Identity = 47/136 (34.56%), Postives = 73/136 (53.68%), Query Frame = 1 

Query: 73  RLTNSLMMHGRNNGKKLMAVRIIKHTMEIIHLLTDLNPIQVIVDAVVNSGP--REDATRI 132
           RL N L+     +GKK +A +II   ++ I   T+ NP+ V+  A+    P     A R+
Sbjct: 21  RLVNMLVNRILKHGKKSLAYQIIYRALKKIQQKTETNPLSVLRQAIRGVTPDIAVKARRV 80

Query: 133 GSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSY 192
           G  G   +  ++I   +    AI  L   +R+   RN   +A  L+ EL++AAKGS +  
Sbjct: 81  G--GSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRN---MAFKLSSELVDAAKGSGD-- 140

Query: 193 AIKKKDEIERVAKANR 207
           AI+KK+E  R+A+ANR
Sbjct: 141 AIRKKEETHRMAEANR 149

[Close]
BLAST of Cp4.1LG08g09370 vs. NCBI nr
Match: gi|449445316|ref|XP_004140419.1| (PREDICTED: 40S ribosomal protein S5 [Cucumis sativus])

HSP 1 Score: 382.5 bits (981), Expect = 4.7e-103
Identity = 196/207 (94.69%), Postives = 202/207 (97.58%), Query Frame = 1 

Query: 1   MAEAVEVV-QELIQPHHDVKLFNRWTFDDVQVNDMSLGDYIGVAPSKHATYVPHTAGRYS 60
           MA  V+VV QELIQPHHDVKLFNRWTFDDVQVND+SL DY+GVAP+KHATYVPHTAGRYS
Sbjct: 1   MAVEVDVVNQELIQPHHDVKLFNRWTFDDVQVNDISLVDYVGVAPAKHATYVPHTAGRYS 60

Query: 61  MKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHTMEIIHLLTDLNPIQVIVDAVV 120
           +KRFRKAQCPI+ERLTNSLMMHGRNNGKKLMAVRIIKH MEIIHLLTDLNPIQVIVDAVV
Sbjct: 61  VKRFRKAQCPIIERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 120

Query: 121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 180
           NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL
Sbjct: 121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 180

Query: 181 INAAKGSSNSYAIKKKDEIERVAKANR 207
           INAAKGSSNSYAIKKKDEIERVAKANR
Sbjct: 181 INAAKGSSNSYAIKKKDEIERVAKANR 207

[Close]
BLAST of Cp4.1LG08g09370 vs. NCBI nr
Match: gi|659114009|ref|XP_008456864.1| (PREDICTED: 40S ribosomal protein S5-like [Cucumis melo])

HSP 1 Score: 381.3 bits (978), Expect = 1.0e-102
Identity = 197/207 (95.17%), Postives = 201/207 (97.10%), Query Frame = 1 

Query: 1   MAEAVEVV-QELIQPHHDVKLFNRWTFDDVQVNDMSLGDYIGVAPSKHATYVPHTAGRYS 60
           MA  V+VV QEL QPHHDVKLFNRWTFDDVQVND+SL DYIGVAP+KHATYVPHTAGRYS
Sbjct: 47  MAVEVDVVNQELTQPHHDVKLFNRWTFDDVQVNDISLVDYIGVAPAKHATYVPHTAGRYS 106

Query: 61  MKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHTMEIIHLLTDLNPIQVIVDAVV 120
           +KRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKH MEIIHLLTDLNPIQVIVDAVV
Sbjct: 107 VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 166

Query: 121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 180
           NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL
Sbjct: 167 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 226

Query: 181 INAAKGSSNSYAIKKKDEIERVAKANR 207
           INAAKGSSNSYAIKKKDEIERVAKANR
Sbjct: 227 INAAKGSSNSYAIKKKDEIERVAKANR 253

[Close]
BLAST of Cp4.1LG08g09370 vs. NCBI nr
Match: gi|659092671|ref|XP_008447165.1| (PREDICTED: 40S ribosomal protein S5-like isoform X2 [Cucumis melo])

HSP 1 Score: 380.9 bits (977), Expect = 1.4e-102
Identity = 196/207 (94.69%), Postives = 201/207 (97.10%), Query Frame = 1 

Query: 1   MAEAVEVV-QELIQPHHDVKLFNRWTFDDVQVNDMSLGDYIGVAPSKHATYVPHTAGRYS 60
           MA  ++VV QEL QPHHDVKLFNRWTFDDVQVND+SL DYIGVAP+KHATYVPHTAGRYS
Sbjct: 1   MAVEIDVVNQELTQPHHDVKLFNRWTFDDVQVNDISLVDYIGVAPAKHATYVPHTAGRYS 60

Query: 61  MKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHTMEIIHLLTDLNPIQVIVDAVV 120
           +KRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKH MEIIHLLTDLNPIQVIVDAVV
Sbjct: 61  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 120

Query: 121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 180
           NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL
Sbjct: 121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 180

Query: 181 INAAKGSSNSYAIKKKDEIERVAKANR 207
           INAAKGSSNSYAIKKKDEIERVAKANR
Sbjct: 181 INAAKGSSNSYAIKKKDEIERVAKANR 207

[Close]
BLAST of Cp4.1LG08g09370 vs. NCBI nr
Match: gi|659092669|ref|XP_008447164.1| (PREDICTED: 40S ribosomal protein S5-like isoform X1 [Cucumis melo])

HSP 1 Score: 380.9 bits (977), Expect = 1.4e-102
Identity = 196/207 (94.69%), Postives = 201/207 (97.10%), Query Frame = 1 

Query: 1   MAEAVEVV-QELIQPHHDVKLFNRWTFDDVQVNDMSLGDYIGVAPSKHATYVPHTAGRYS 60
           MA  ++VV QEL QPHHDVKLFNRWTFDDVQVND+SL DYIGVAP+KHATYVPHTAGRYS
Sbjct: 14  MAVEIDVVNQELTQPHHDVKLFNRWTFDDVQVNDISLVDYIGVAPAKHATYVPHTAGRYS 73

Query: 61  MKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHTMEIIHLLTDLNPIQVIVDAVV 120
           +KRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKH MEIIHLLTDLNPIQVIVDAVV
Sbjct: 74  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 133

Query: 121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 180
           NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL
Sbjct: 134 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 193

Query: 181 INAAKGSSNSYAIKKKDEIERVAKANR 207
           INAAKGSSNSYAIKKKDEIERVAKANR
Sbjct: 194 INAAKGSSNSYAIKKKDEIERVAKANR 220

[Close]
BLAST of Cp4.1LG08g09370 vs. NCBI nr
Match: gi|778725851|ref|XP_011659014.1| (PREDICTED: 40S ribosomal protein S5 isoform X1 [Cucumis sativus])

HSP 1 Score: 377.1 bits (967), Expect = 2.0e-101
Identity = 193/207 (93.24%), Postives = 200/207 (96.62%), Query Frame = 1 

Query: 1   MAEAVEVV-QELIQPHHDVKLFNRWTFDDVQVNDMSLGDYIGVAPSKHATYVPHTAGRYS 60
           MA  ++VV QEL Q HHDVKLFNRWTFDDVQVND+SL DY+GVAP+KHATYVPHTAGRYS
Sbjct: 14  MAVEIDVVNQELTQSHHDVKLFNRWTFDDVQVNDISLVDYVGVAPAKHATYVPHTAGRYS 73

Query: 61  MKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHTMEIIHLLTDLNPIQVIVDAVV 120
           +KRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKH MEIIHLLTDLNP+QVIVDAVV
Sbjct: 74  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPVQVIVDAVV 133

Query: 121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 180
           NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL
Sbjct: 134 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 193

Query: 181 INAAKGSSNSYAIKKKDEIERVAKANR 207
           INAAKGSSNSYAIKKKDEIERVAKANR
Sbjct: 194 INAAKGSSNSYAIKKKDEIERVAKANR 220

The following BLAST results are available for this feature:
BLAST of Cp4.1LG08g09370 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RS51_ARATH5.6e-9686.9640S ribosomal protein S5-1 OS=Arabidopsis thaliana GN=RPS5A PE=1 SV=1[more]
RS5_CICAR5.6e-9694.2140S ribosomal protein S5 (Fragment) OS=Cicer arietinum GN=RPS5 PE=2 SV=1[more]
RS52_ARATH1.4e-9485.9940S ribosomal protein S5-2 OS=Arabidopsis thaliana GN=RPS5B PE=1 SV=2[more]
RS5_HUMAN1.2e-8280.0040S ribosomal protein S5 OS=Homo sapiens GN=RPS5 PE=1 SV=4[more]
RS5_BOVIN1.2e-8280.0040S ribosomal protein S5 OS=Bos taurus GN=RPS5 PE=2 SV=3[more]
BLAST of Cp4.1LG08g09370 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KSZ1_CUCSA3.3e-10394.69Uncharacterized protein OS=Cucumis sativus GN=Csa_5G292230 PE=3 SV=1[more]
A0A0A0K5K0_CUCSA1.4e-10193.24Uncharacterized protein OS=Cucumis sativus GN=Csa_7G232530 PE=3 SV=1[more]
A0A0A0LRZ5_CUCSA6.8e-10193.24Uncharacterized protein OS=Cucumis sativus GN=Csa_2G373440 PE=3 SV=1[more]
A0A0A0LVI4_CUCSA1.2e-10093.2440S ribosomal protein S5 OS=Cucumis sativus GN=Csa_1G168900 PE=4 SV=1[more]
W9RQK6_9ROSA1.1e-9892.9640S ribosomal protein S5 OS=Morus notabilis GN=L484_012437 PE=3 SV=1[more]
BLAST of Cp4.1LG08g09370 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G37270.13.1e-9786.96 ribosomal protein 5B[more]
AT3G11940.17.7e-9685.99 ribosomal protein 5A[more]
ATCG01240.11.0e-0734.56ATCG01240.1 ribosomal protein S7[more]
ATCG00900.11.0e-0734.56ATCG00900.1 Ribosomal protein S7p/S5e family protein[more]
BLAST of Cp4.1LG08g09370 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449445316|ref|XP_004140419.1|4.7e-10394.69PREDICTED: 40S ribosomal protein S5 [Cucumis sativus][more]
gi|659114009|ref|XP_008456864.1|1.0e-10295.17PREDICTED: 40S ribosomal protein S5-like [Cucumis melo][more]
gi|659092671|ref|XP_008447165.1|1.4e-10294.69PREDICTED: 40S ribosomal protein S5-like isoform X2 [Cucumis melo][more]
gi|659092669|ref|XP_008447164.1|1.4e-10294.69PREDICTED: 40S ribosomal protein S5-like isoform X1 [Cucumis melo][more]
gi|778725851|ref|XP_011659014.1|2.0e-10193.24PREDICTED: 40S ribosomal protein S5 isoform X1 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0015935small ribosomal subunit
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR023798Ribosomal_S7_dom
IPR020606Ribosomal_S7_CS
IPR005716Ribosomal_S5/S7_euk/arc
IPR000235Ribosomal_S5/S7
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
biological_process GO:0032259 methylation
cellular_component GO:0015935 small ribosomal subunit
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0008168 methyltransferase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG08g09370.1Cp4.1LG08g09370.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000235Ribosomal protein S5/S7PIRPIRSF002122RPS7p_RPS7a_RPS5e_RPS7ocoord: 1..206
score: 1.8
IPR000235Ribosomal protein S5/S7PANTHERPTHR11205RIBOSOMAL PROTEIN S7coord: 2..206
score: 6.8E
IPR005716Ribosomal protein S5/S7, eukaryotic/archaealTIGRFAMsTIGR01028TIGR01028coord: 18..206
score: 4.0
IPR020606Ribosomal protein S7, conserved sitePROSITEPS00052RIBOSOMAL_S7coord: 72..98
scor
IPR023798Ribosomal protein S7 domainGENE3DG3DSA:1.10.455.10coord: 18..206
score: 1.2
IPR023798Ribosomal protein S7 domainPFAMPF00177Ribosomal_S7coord: 63..206
score: 6.9
IPR023798Ribosomal protein S7 domainunknownSSF47973Ribosomal protein S7coord: 19..206
score: 4.06
NoneNo IPR availablePANTHERPTHR11205:SF2440S RIBOSOMAL PROTEIN S5-1-RELATEDcoord: 2..206
score: 6.8E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG08g09370CmaCh06G005600Cucurbita maxima (Rimu)cmacpeB852
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG08g09370Cp4.1LG03g00260Cucurbita pepo (Zucchini)cpecpeB487
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG08g09370Cucumber (Chinese Long) v3cpecucB1057
Cp4.1LG08g09370Wax gourdcpewgoB1088
Cp4.1LG08g09370Cucumber (Gy14) v1cgycpeB0650
Cp4.1LG08g09370Cucurbita maxima (Rimu)cmacpeB296
Cp4.1LG08g09370Cucurbita moschata (Rifu)cmocpeB259
Cp4.1LG08g09370Cucurbita moschata (Rifu)cmocpeB797
Cp4.1LG08g09370Wild cucumber (PI 183967)cpecpiB863
Cp4.1LG08g09370Cucumber (Chinese Long) v2cpecuB861
Cp4.1LG08g09370Bottle gourd (USVL1VR-Ls)cpelsiB707
Cp4.1LG08g09370Watermelon (Charleston Gray)cpewcgB765
Cp4.1LG08g09370Watermelon (97103) v1cpewmB827
Cp4.1LG08g09370Melon (DHL92) v3.5.1cpemeB796
Cp4.1LG08g09370Cucumber (Gy14) v2cgybcpeB455
Cp4.1LG08g09370Melon (DHL92) v3.6.1cpemedB937
Cp4.1LG08g09370Silver-seed gourdcarcpeB0354
Cp4.1LG08g09370Silver-seed gourdcarcpeB0957