Cp4.1LG08g07120 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG08g07120
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Unknown protein
Location	Cp4.1LG08 : 5570097 .. 5571701 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GCAAAGGTCTCAAGAGAGAACAAAGTGTTGGTGAGTGTGTATACAGAGAGGCAGGAACCAAGAGTAGCAGTAAATCGTGTCCAACGTGATGATGTGAACAAAACAGTGAGGAATCAGTGGAAGAAAGAAATAGCTAATAAAGGATACAATAGGAGAACTGAACTCCTTAAGTACTCTCAACGCCTGCGAAAATCTGCACAATCACCTGCATCTCCATATCTTCCAACTCCGGAGCTGATTTCTGTGACGAACAAGCAACCGATCCAAAGAAACGTAGCGATTAATCCTGTATGTATGCTCTTCCGTTTCTGTAAGTTCATTATTTTTAGAACTCAAGAATTCCCGTTCAAGCAACCTAGTGGCATATTGTAGGAACAACGATCCTCTACAGTGGCATGATACTGTCCACTTTGAATATAAGCTCTCATGTTTTTTCAAAAGACCTCAAACCAATGAAGATAATATCCCTTACTTATATACCATGATATTTCCCTTTATTAGCTAATGTGAGACTCGAACAATCTTAACAATTCCTAATAATCCTCACCACGAACAAAGTACACCATTGAGCCTCACATGCCGACTCCTTTTTCTTTGGAGCCCTCGAACAAAGTACAACATTGAGTCTCCCCTTGAACAGTTATCTATTTGTCCAACACTATTCTAGACGACTTCTCTTCACTAGAGCACATTCTTAGTTCAATAAAACTCTACCATGAATCTTCACCATGACTGCACTTTCGAGACTCGCAACTTCTTTGTTTGACACCTGAGTCACTACGACTACACCTTCAAGATTCAGAGCTTCTTTGTTCAACATTTGAGGATTCTAGTGACATAACTAAGTTAAGGTATGACTCTGATACCACTTGTAGGAACAACTACCCTCCACAATGGCATAATATTGTTCACTTTGAGCATAAACTCCCGTGATTTTGTTTTTGGTTTCCCTAAAAGGTCCCATACAAATAGAGATAGTGTCGCTTAATTATATATCCATGATCTTCCCCTTAATTAGCCAATGCGAAACTCCAACAATCCTCAACACACAACAATAATCTAACCCACCGAGTGAGAAAGTATGATAATCAATTTAGTTTTCTTCAACAATAATGTAACCCAACTGTACACCAAATTCATCTGAACAACTCAAATTTGAATAGACATATTGCAGTAATATTTGTTCAAGTGGTCAAGTTTTGGATGTGTAAGTATCTCCATGGTCATTCGACCATAATTTTAAGTTAGAAACATGATTACCAGTGTTGTGTAATACTGTAGATGAGGAGATGATGTCAAACCCAATCATTTCTCTTCTATATATAACTTGTTTTGGAAGGATATAGCCTGGTATCTATATCATGTTTGTGACGAAGAATTAAAGTTTTCCTTTTTTGATAGCTCGTCAATCTTCGTGCAAAGCCCAAGGGTGCCAGATTTACCTCTTGCTTCGGCAACCTGATTCAAAGGTCTTACAAGGCTTTGACGAGTTTTCAACCAAAAAACAAGAGACAAAATCAGAACCAAAGCAGCGGATCTACCAAGAATGCTAATGAGAATAAAAGAATTAGAAGGATAAGACTATTGAAATTTACATGCACTTAG

mRNA sequence

GCAAAGGTCTCAAGAGAGAACAAAGTGTTGGTGAGTGTGTATACAGAGAGGCAGGAACCAAGAGTAGCAGTAAATCGTGTCCAACGTGATGATGTGAACAAAACAGTGAGGAATCAGTGGAAGAAAGAAATAGCTAATAAAGGATACAATAGGAGAACTGAACTCCTTAAGTACTCTCAACGCCTGCGAAAATCTGCACAATCACCTGCATCTCCATATCTTCCAACTCCGGAGCTGATTTCTGTGACGAACAAGCAACCGATCCAAAGAAACGTAGCGATTAATCCTCTCGTCAATCTTCGTGCAAAGCCCAAGGGTGCCAGATTTACCTCTTGCTTCGGCAACCTGATTCAAAGGTCTTACAAGGCTTTGACGAGTTTTCAACCAAAAAACAAGAGACAAAATCAGAACCAAAGCAGCGGATCTACCAAGAATGCTAATGAGAATAAAAGAATTAGAAGGATAAGACTATTGAAATTTACATGCACTTAG

Coding sequence (CDS)

GCAAAGGTCTCAAGAGAGAACAAAGTGTTGGTGAGTGTGTATACAGAGAGGCAGGAACCAAGAGTAGCAGTAAATCGTGTCCAACGTGATGATGTGAACAAAACAGTGAGGAATCAGTGGAAGAAAGAAATAGCTAATAAAGGATACAATAGGAGAACTGAACTCCTTAAGTACTCTCAACGCCTGCGAAAATCTGCACAATCACCTGCATCTCCATATCTTCCAACTCCGGAGCTGATTTCTGTGACGAACAAGCAACCGATCCAAAGAAACGTAGCGATTAATCCTCTCGTCAATCTTCGTGCAAAGCCCAAGGGTGCCAGATTTACCTCTTGCTTCGGCAACCTGATTCAAAGGTCTTACAAGGCTTTGACGAGTTTTCAACCAAAAAACAAGAGACAAAATCAGAACCAAAGCAGCGGATCTACCAAGAATGCTAATGAGAATAAAAGAATTAGAAGGATAAGACTATTGAAATTTACATGCACTTAG

Protein sequence

AKVSRENKVLVSVYTERQEPRVAVNRVQRDDVNKTVRNQWKKEIANKGYNRRTELLKYSQRLRKSAQSPASPYLPTPELISVTNKQPIQRNVAINPLVNLRAKPKGARFTSCFGNLIQRSYKALTSFQPKNKRQNQNQSSGSTKNANENKRIRRIRLLKFTCT

Homology

[Close]

BLAST of Cp4.1LG08g07120 vs. TrEMBL
Match: A0A0A0L6R0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G017150 PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 1.9e-53
Identity = 117/156 (75.00%), Postives = 130/156 (83.33%), Query Frame = 1


Query: 1   AKVSRENKVLVSVYTERQEPRVAVNRVQRDDVNKTVRNQWKKEIANKGYNRRTELLKYSQ 60
           A VS+ENKVLV+VY+E+QEPR+ VNR QRD+VNK VRNQWK++ ANKGYNRRTELLKYSQ
Sbjct: 2   ATVSKENKVLVTVYSEKQEPRLPVNRYQRDNVNKVVRNQWKQDTANKGYNRRTELLKYSQ 61

Query: 61  RLRKSAQSPASPYLPTPELISVTNKQPIQRNVAIN------PLVNLRAKPKGARFTSCFG 120
           RLRKSA+SPASPY+ TPE I + NKQPI R++AIN       LVNL  KPKG RFTSCFG
Sbjct: 62  RLRKSARSPASPYIRTPEPIPLKNKQPIARSIAINLVCTSFSLVNLCGKPKGPRFTSCFG 121

Query: 121 NLIQRSYKALTSFQPKNKRQNQNQSSGSTKNANENK 151
           NLIQRSYKALTSFQPK  RQ QNQSSGSTK  NE K
Sbjct: 122 NLIQRSYKALTSFQPKKDRQKQNQSSGSTKKVNEVK 157

[Close]

BLAST of Cp4.1LG08g07120 vs. TrEMBL
Match: A0A061GAZ6_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_015850 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 9.1e-08
Identity = 57/148 (38.51%), Postives = 81/148 (54.73%), Query Frame = 1


Query: 5   RENKVLVSVYTERQEPRVAVNRV---QRDDVNKTVRNQWKKEI-ANKGYNRRTELLKYSQ 64
           ++  VLV+VY E+    V+ N     Q   ++ T++ +  K   A KGYNRR ELL YSQ
Sbjct: 27  KDMAVLVTVYAEKPRRSVSSNHQHHRQHHYLHHTIKQELIKHGGAGKGYNRRAELLHYSQ 86

Query: 65  RLRKSAQSPASPYLPTPELISVTNKQPIQRN--VAINPLVNLRAKPKGARFTSCFGN--- 124
           RLR+SA+S AS  L           +P+  N   A N +V+++ KPK +R  +CF N   
Sbjct: 87  RLRESARSAASTAL---------QSKPVSSNDQQASNKIVSVQRKPKCSRTPACFDNWGI 146

Query: 125 LIQRSYKALTSFQPKNKRQNQNQSSGST 144
           LI R  ++LT+ Q K K   + Q  GST
Sbjct: 147 LIPRFLRSLTTLQAK-KTGKKKQHCGST 164

[Close]

BLAST of Cp4.1LG08g07120 vs. NCBI nr
Match: gi|778675235|ref|XP_011650375.1| (PREDICTED: uncharacterized protein LOC105434777 isoform X2 [Cucumis sativus])

HSP 1 Score: 229.6 bits (584), Expect = 4.0e-57
Identity = 126/176 (71.59%), Postives = 139/176 (78.98%), Query Frame = 1


Query: 1   AKVSRENKVLVSVYTERQEPRVAVNRVQRDDVNKTVRNQWKKEIANKGYNRRTELLKYSQ 60
           A VS+ENKVLV+VY+E+QEPR+ VNR QRD+VNK VRNQWK++ ANKGYNRRTELLKYSQ
Sbjct: 2   ATVSKENKVLVTVYSEKQEPRLPVNRYQRDNVNKVVRNQWKQDTANKGYNRRTELLKYSQ 61

Query: 61  RLRKSAQSPASPYLPTPELISVTNKQPIQRNVAINPLVNLRAKPKGARFTSCFGNLIQRS 120
           RLRKSA+SPASPY+ TPE I + NKQPI R++AIN LVNL  KPKG RFTSCFGNLIQRS
Sbjct: 62  RLRKSARSPASPYIRTPEPIPLKNKQPIARSIAINLLVNLCGKPKGPRFTSCFGNLIQRS 121

Query: 121 YKALTSFQPKNKRQNQNQSSGSTKNANENKRIR-------------RIRLLKFTCT 164
           YKALTSFQPK  RQ QNQSSGSTK  NE K                RIRLL FTCT
Sbjct: 122 YKALTSFQPKKDRQKQNQSSGSTKKVNEVKNSESKSKNTMDKVKGSRIRLLTFTCT 177

[Close]

BLAST of Cp4.1LG08g07120 vs. NCBI nr
Match: gi|659095804|ref|XP_008448776.1| (PREDICTED: uncharacterized protein LOC103490841 isoform X2 [Cucumis melo])

HSP 1 Score: 228.8 bits (582), Expect = 6.9e-57
Identity = 126/176 (71.59%), Postives = 140/176 (79.55%), Query Frame = 1


Query: 1   AKVSRENKVLVSVYTERQEPRVAVNRVQRDDVNKTVRNQWKKEIANKGYNRRTELLKYSQ 60
           A VS+ENKVLV+VY+E+QEPR+ VNR QR +VNK VRNQWK++ ANKGYNRRTELLKYSQ
Sbjct: 2   ATVSKENKVLVTVYSEKQEPRLPVNRYQRANVNKVVRNQWKQDTANKGYNRRTELLKYSQ 61

Query: 61  RLRKSAQSPASPYLPTPELISVTNKQPIQRNVAINPLVNLRAKPKGARFTSCFGNLIQRS 120
           RLRKSA+SPASPY+ TPE I + NKQPI R++AIN LVNL  KPKG RFTSCFGNLIQRS
Sbjct: 62  RLRKSARSPASPYIRTPEPIPLKNKQPIARSIAINLLVNLCGKPKGPRFTSCFGNLIQRS 121

Query: 121 YKALTSFQPKNKRQNQNQSSGSTKNANENK-------------RIRRIRLLKFTCT 164
           YKAL SFQPK  RQ QNQSSGSTKN NE K             + RRIRLL FTCT
Sbjct: 122 YKALASFQPKKDRQKQNQSSGSTKNVNEVKNSESKSKNTIDKVKGRRIRLLTFTCT 177

[Close]

BLAST of Cp4.1LG08g07120 vs. NCBI nr
Match: gi|778675232|ref|XP_011650374.1| (PREDICTED: uncharacterized protein LOC105434777 isoform X1 [Cucumis sativus])

HSP 1 Score: 223.8 bits (569), Expect = 2.2e-55
Identity = 126/182 (69.23%), Postives = 139/182 (76.37%), Query Frame = 1


Query: 1   AKVSRENKVLVSVYTERQEPRVAVNRVQRDDVNKTVRNQWKKEIANKGYNRRTELLKYSQ 60
           A VS+ENKVLV+VY+E+QEPR+ VNR QRD+VNK VRNQWK++ ANKGYNRRTELLKYSQ
Sbjct: 2   ATVSKENKVLVTVYSEKQEPRLPVNRYQRDNVNKVVRNQWKQDTANKGYNRRTELLKYSQ 61

Query: 61  RLRKSAQSPASPYLPTPELISVTNKQPIQRNVAIN------PLVNLRAKPKGARFTSCFG 120
           RLRKSA+SPASPY+ TPE I + NKQPI R++AIN       LVNL  KPKG RFTSCFG
Sbjct: 62  RLRKSARSPASPYIRTPEPIPLKNKQPIARSIAINLVCTSFSLVNLCGKPKGPRFTSCFG 121

Query: 121 NLIQRSYKALTSFQPKNKRQNQNQSSGSTKNANENKRIR-------------RIRLLKFT 164
           NLIQRSYKALTSFQPK  RQ QNQSSGSTK  NE K                RIRLL FT
Sbjct: 122 NLIQRSYKALTSFQPKKDRQKQNQSSGSTKKVNEVKNSESKSKNTMDKVKGSRIRLLTFT 181

[Close]

BLAST of Cp4.1LG08g07120 vs. NCBI nr
Match: gi|659095802|ref|XP_008448775.1| (PREDICTED: uncharacterized protein LOC103490841 isoform X1 [Cucumis melo])

HSP 1 Score: 223.0 bits (567), Expect = 3.8e-55
Identity = 126/182 (69.23%), Postives = 140/182 (76.92%), Query Frame = 1


Query: 1   AKVSRENKVLVSVYTERQEPRVAVNRVQRDDVNKTVRNQWKKEIANKGYNRRTELLKYSQ 60
           A VS+ENKVLV+VY+E+QEPR+ VNR QR +VNK VRNQWK++ ANKGYNRRTELLKYSQ
Sbjct: 2   ATVSKENKVLVTVYSEKQEPRLPVNRYQRANVNKVVRNQWKQDTANKGYNRRTELLKYSQ 61

Query: 61  RLRKSAQSPASPYLPTPELISVTNKQPIQRNVAIN------PLVNLRAKPKGARFTSCFG 120
           RLRKSA+SPASPY+ TPE I + NKQPI R++AIN       LVNL  KPKG RFTSCFG
Sbjct: 62  RLRKSARSPASPYIRTPEPIPLKNKQPIARSIAINLVCTSFSLVNLCGKPKGPRFTSCFG 121

Query: 121 NLIQRSYKALTSFQPKNKRQNQNQSSGSTKNANENK-------------RIRRIRLLKFT 164
           NLIQRSYKAL SFQPK  RQ QNQSSGSTKN NE K             + RRIRLL FT
Sbjct: 122 NLIQRSYKALASFQPKKDRQKQNQSSGSTKNVNEVKNSESKSKNTIDKVKGRRIRLLTFT 181

[Close]

BLAST of Cp4.1LG08g07120 vs. NCBI nr
Match: gi|700200688|gb|KGN55821.1| (hypothetical protein Csa_3G017150 [Cucumis sativus])

HSP 1 Score: 216.9 bits (551), Expect = 2.7e-53
Identity = 117/156 (75.00%), Postives = 130/156 (83.33%), Query Frame = 1


Query: 1   AKVSRENKVLVSVYTERQEPRVAVNRVQRDDVNKTVRNQWKKEIANKGYNRRTELLKYSQ 60
           A VS+ENKVLV+VY+E+QEPR+ VNR QRD+VNK VRNQWK++ ANKGYNRRTELLKYSQ
Sbjct: 2   ATVSKENKVLVTVYSEKQEPRLPVNRYQRDNVNKVVRNQWKQDTANKGYNRRTELLKYSQ 61

Query: 61  RLRKSAQSPASPYLPTPELISVTNKQPIQRNVAIN------PLVNLRAKPKGARFTSCFG 120
           RLRKSA+SPASPY+ TPE I + NKQPI R++AIN       LVNL  KPKG RFTSCFG
Sbjct: 62  RLRKSARSPASPYIRTPEPIPLKNKQPIARSIAINLVCTSFSLVNLCGKPKGPRFTSCFG 121

Query: 121 NLIQRSYKALTSFQPKNKRQNQNQSSGSTKNANENK 151
           NLIQRSYKALTSFQPK  RQ QNQSSGSTK  NE K
Sbjct: 122 NLIQRSYKALTSFQPKKDRQKQNQSSGSTKKVNEVK 157

The following BLAST results are available for this feature:

BLAST of Cp4.1LG08g07120 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG08g07120 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L6R0_CUCSA	1.9e-53	75.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G017150 PE=4 SV=1	[more]
A0A061GAZ6_THECC	9.1e-08	38.51	Uncharacterized protein OS=Theobroma cacao GN=TCM_015850 PE=4 SV=1	[more]

BLAST of Cp4.1LG08g07120 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG08g07120 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778675235\|ref\|XP_011650375.1\|	4.0e-57	71.59	PREDICTED: uncharacterized protein LOC105434777 isoform X2 [Cucumis sativus]	[more]
gi\|659095804\|ref\|XP_008448776.1\|	6.9e-57	71.59	PREDICTED: uncharacterized protein LOC103490841 isoform X2 [Cucumis melo]	[more]
gi\|778675232\|ref\|XP_011650374.1\|	2.2e-55	69.23	PREDICTED: uncharacterized protein LOC105434777 isoform X1 [Cucumis sativus]	[more]
gi\|659095802\|ref\|XP_008448775.1\|	3.8e-55	69.23	PREDICTED: uncharacterized protein LOC103490841 isoform X1 [Cucumis melo]	[more]
gi\|700200688\|gb\|KGN55821.1\|	2.7e-53	75.00	hypothetical protein Csa_3G017150 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG08g07120.1	Cp4.1LG08g07120.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG08g07120	Cucsa.321340	Cucumber (Gy14) v1	cgycpeB0857
Cp4.1LG08g07120	CmaCh06G008150	Cucurbita maxima (Rimu)	cmacpeB852
Cp4.1LG08g07120	CmoCh06G008370	Cucurbita moschata (Rifu)	cmocpeB797
Cp4.1LG08g07120	Cla005596	Watermelon (97103) v1	cpewmB828
Cp4.1LG08g07120	Csa3G017150	Cucumber (Chinese Long) v2	cpecuB850
Cp4.1LG08g07120	ClCG10G002240	Watermelon (Charleston Gray)	cpewcgB766
Cp4.1LG08g07120	CSPI03G02250	Wild cucumber (PI 183967)	cpecpiB852
Cp4.1LG08g07120	Lsi07G012540	Bottle gourd (USVL1VR-Ls)	cpelsiB721
Cp4.1LG08g07120	CsaV3_3G002280	Cucumber (Chinese Long) v3	cpecucB1047
Cp4.1LG08g07120	Bhi11G000070	Wax gourd	cpewgoB1090
Cp4.1LG08g07120	CsGy3G002160	Cucumber (Gy14) v2	cgybcpeB445
Cp4.1LG08g07120	Carg12046	Silver-seed gourd	carcpeB0808

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG08g07120	Cucurbita maxima (Rimu)	cmacpeB364
Cp4.1LG08g07120	Cucurbita moschata (Rifu)	cmocpeB328
Cp4.1LG08g07120	Cucurbita moschata (Rifu)	cmocpeB601
Cp4.1LG08g07120	Melon (DHL92) v3.5.1	cpemeB814
Cp4.1LG08g07120	Melon (DHL92) v3.6.1	cpemedB948
Cp4.1LG08g07120	Silver-seed gourd	carcpeB0991
Cp4.1LG08g07120	Cucurbita pepo (Zucchini)	cpecpeB250
Cp4.1LG08g07120	Cucurbita pepo (Zucchini)	cpecpeB508