Carg12046 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg12046
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_037 : 711273 .. 712923 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAACTCAAGGTTTGTGTCCTGACATGGTGTGGTGATATTTGTGAAGTTTAGGCAAAGGTCTCAAGAGAGAACAAAGTGTTGGTGAGTGTGTATACAGAGAGGCAGGAACCAAGAGTAGCAGTAAATCGTGTCCAACGTGATGATGTGAACAAAACAGTGAGGAATCAGTGGAAGAAAGAAATAGCTAATAAAGGATACAATAGGAGAACTGAACTCCTTAAGTACTCTCAACGCCTGCGAAAATCTGCACAATCACCTGCATCTCCATATCTTCCAACTCCGGAGCCAATTTCTGTGACGAACAAGCAACCGATCCACAGAAACGTCGCGATTAATCCTGTATGTATGCTCTTCCGTTTCTGTAAGTTCATTATTTTTAGAATTCGAGAATTCCTGTTCAAGGAACGACGACCCTTCGTAGTGGCATAATACTGTCCACGTTGAGTATAAGCTCTCATGGTTTTACTTTTAGTTTTTTCAAAAGACCTCAAACCAATGAAGATAATATCCCTTACTTATATACCATGATATTTCCCTTTATTAGCTGATGTGAGACTCGAACAATCTTAACAAATTCCTAATAATCCTCCCCACGAACAAAGTACACCATTGAGCCTCACTTGATGACTCCTTTTTCTTTGGAGCCTTCGAACAAAGTACAACATTGAGTCTCCCCTTAAATAGTTTTCTATCTGTCCAACACTATTATAGACGACTCTTGTTCACTAGAGCACATTGTTAGTTCAATAAAACTCTACCATGAATCTTCACCATGACTGCACTTTCGAGACTAAACTTCTTTGTTTGACACTTGAGTCACTATGACTACACCTTCAAGATTCAGAGCTTCTTTGTTCGTGACATAACCAAGTTAGGGCATAGCTCTAATACCACTTATAGGAACAACTACCCTTCACAATGACATCATATTGTTCACTTTGAGCATAAACTCTCGTGAGTTTGTTTTTGGTTTTCCTAAAAGGTCCCATACAAATAGAGATAGTGTCGCTTAATTATATATCTACGATCTTCCCCTTAATTAGCCAATGCGAGACTCCAACCATCCCAACAATCCTCAATACACACAACAATAATCTAACCCACCTAGCGAGAAAGTATGATAATCAATTTGGTTTTCTTCAACAATAATGTATAACCCAACTAGTGCCGTACACCAAATTCATCTGAACAACTCAAATTTGAATAGATATTGCAATAATATTTGTTCAAGTGGTCAAGTTCTGGATGTGTGTGTATCTCCATGGTCATTCGACCATAATTTTAAGTCAGAAACTTGAAATAGTTACCAGTGTTGTAATACTGTAGAGGAGGAGATGATATCAAACCCAATCATTTCTCCTGTATATAACTTGTTTTGGAAGGATATAGCCTGGTATCTATATCATGTTTGTGACGAAGAATTAAAGTTTTCCTTTTTTGATAGCTCGTCAATCTTCGTGCAAAGCCCAAGGGTGCCAGATTTACCTCTTGCTTCGGCAACCTGATTCAAAGGTCTCGCAAGGCTTTGACGAGTTTTCAACCAAAAAACAAGAGACAAAATCAGAACCAAAGCAGCGGATCTACCAAGAATGCTAATGATAATAAAAGAATTAGAAGGATAAGACTATTGAAATTTACATGCACTTAG

mRNA sequence

ATGAAACTCAAGGCAAAGGTCTCAAGAGAGAACAAAGTGTTGGTGAGTGTGTATACAGAGAGGCAGGAACCAAGAGTAGCAGTAAATCGTGTCCAACGTGATGATGTGAACAAAACAGTGAGGAATCAGTGGAAGAAAGAAATAGCTAATAAAGGATACAATAGGAGAACTGAACTCCTTAAGTACTCTCAACGCCTGCGAAAATCTGCACAATCACCTGCATCTCCATATCTTCCAACTCCGGAGCCAATTTCTCTCGTCAATCTTCGTGCAAAGCCCAAGGGTGCCAGATTTACCTCTTGCTTCGGCAACCTGATTCAAAGGTCTCGCAAGGCTTTGACGAGTTTTCAACCAAAAAACAAGAGACAAAATCAGAACCAAAGCAGCGGATCTACCAAGAATGCTAATGATAATAAAAGAATTAGAAGGATAAGACTATTGAAATTTACATGCACTTAG

Coding sequence (CDS)

ATGAAACTCAAGGCAAAGGTCTCAAGAGAGAACAAAGTGTTGGTGAGTGTGTATACAGAGAGGCAGGAACCAAGAGTAGCAGTAAATCGTGTCCAACGTGATGATGTGAACAAAACAGTGAGGAATCAGTGGAAGAAAGAAATAGCTAATAAAGGATACAATAGGAGAACTGAACTCCTTAAGTACTCTCAACGCCTGCGAAAATCTGCACAATCACCTGCATCTCCATATCTTCCAACTCCGGAGCCAATTTCTCTCGTCAATCTTCGTGCAAAGCCCAAGGGTGCCAGATTTACCTCTTGCTTCGGCAACCTGATTCAAAGGTCTCGCAAGGCTTTGACGAGTTTTCAACCAAAAAACAAGAGACAAAATCAGAACCAAAGCAGCGGATCTACCAAGAATGCTAATGATAATAAAAGAATTAGAAGGATAAGACTATTGAAATTTACATGCACTTAG

Protein sequence

MKLKAKVSRENKVLVSVYTERQEPRVAVNRVQRDDVNKTVRNQWKKEIANKGYNRRTELLKYSQRLRKSAQSPASPYLPTPEPISLVNLRAKPKGARFTSCFGNLIQRSRKALTSFQPKNKRQNQNQSSGSTKNANDNKRIRRIRLLKFTCT

Homology

[Close]

BLAST of Carg12046 vs. NCBI nr
Match: XP_011650375.1 (PREDICTED: uncharacterized protein LOC105434777 isoform X2 [Cucumis sativus])

HSP 1 Score: 176.4 bits (446), Expect = 7.3e-41
Identity = 94/130 (72.31%), Postives = 104/130 (80.00%), Query Frame = 0


Query: 5   AKVSRENKVLVSVYTERQEPRVAVNRVQRDDVNKTVRNQWKKEIANKGYNRRTELLKYSQ 64
           A VS+ENKVLV+VY+E+QEPR+ VNR QRD+VNK VRNQWK++ ANKGYNRRTELLKYSQ
Sbjct: 2   ATVSKENKVLVTVYSEKQEPRLPVNRYQRDNVNKVVRNQWKQDTANKGYNRRTELLKYSQ 61

Query: 65  RLRKSAQSPASPYLPTPEPIS---------------LVNLRAKPKGARFTSCFGNLIQRS 120
           RLRKSA+SPASPY+ TPEPI                LVNL  KPKG RFTSCFGNLIQRS
Sbjct: 62  RLRKSARSPASPYIRTPEPIPLKNKQPIARSIAINLLVNLCGKPKGPRFTSCFGNLIQRS 121

[Close]

BLAST of Carg12046 vs. NCBI nr
Match: KGN55821.1 (hypothetical protein Csa_3G017150 [Cucumis sativus])

HSP 1 Score: 176.0 bits (445), Expect = 9.6e-41
Identity = 95/136 (69.85%), Postives = 105/136 (77.21%), Query Frame = 0


Query: 5   AKVSRENKVLVSVYTERQEPRVAVNRVQRDDVNKTVRNQWKKEIANKGYNRRTELLKYSQ 64
           A VS+ENKVLV+VY+E+QEPR+ VNR QRD+VNK VRNQWK++ ANKGYNRRTELLKYSQ
Sbjct: 2   ATVSKENKVLVTVYSEKQEPRLPVNRYQRDNVNKVVRNQWKQDTANKGYNRRTELLKYSQ 61

Query: 65  RLRKSAQSPASPYLPTPEPI---------------------SLVNLRAKPKGARFTSCFG 120
           RLRKSA+SPASPY+ TPEPI                     SLVNL  KPKG RFTSCFG
Sbjct: 62  RLRKSARSPASPYIRTPEPIPLKNKQPIARSIAINLVCTSFSLVNLCGKPKGPRFTSCFG 121

[Close]

BLAST of Carg12046 vs. NCBI nr
Match: XP_011650374.1 (PREDICTED: uncharacterized protein LOC105434777 isoform X1 [Cucumis sativus])

HSP 1 Score: 176.0 bits (445), Expect = 9.6e-41
Identity = 95/136 (69.85%), Postives = 105/136 (77.21%), Query Frame = 0


Query: 5   AKVSRENKVLVSVYTERQEPRVAVNRVQRDDVNKTVRNQWKKEIANKGYNRRTELLKYSQ 64
           A VS+ENKVLV+VY+E+QEPR+ VNR QRD+VNK VRNQWK++ ANKGYNRRTELLKYSQ
Sbjct: 2   ATVSKENKVLVTVYSEKQEPRLPVNRYQRDNVNKVVRNQWKQDTANKGYNRRTELLKYSQ 61

Query: 65  RLRKSAQSPASPYLPTPEPI---------------------SLVNLRAKPKGARFTSCFG 120
           RLRKSA+SPASPY+ TPEPI                     SLVNL  KPKG RFTSCFG
Sbjct: 62  RLRKSARSPASPYIRTPEPIPLKNKQPIARSIAINLVCTSFSLVNLCGKPKGPRFTSCFG 121

[Close]

BLAST of Carg12046 vs. NCBI nr
Match: XP_008448776.1 (PREDICTED: uncharacterized protein LOC103490841 isoform X2 [Cucumis melo])

HSP 1 Score: 172.9 bits (437), Expect = 8.1e-40
Identity = 102/176 (57.95%), Postives = 112/176 (63.64%), Query Frame = 0


Query: 5   AKVSRENKVLVSVYTERQEPRVAVNRVQRDDVNKTVRNQWKKEIANKGYNRRTELLKYSQ 64
           A VS+ENKVLV+VY+E+QEPR+ VNR QR +VNK VRNQWK++ ANKGYNRRTELLKYSQ
Sbjct: 2   ATVSKENKVLVTVYSEKQEPRLPVNRYQRANVNKVVRNQWKQDTANKGYNRRTELLKYSQ 61

Query: 65  RLRKSAQSPASPYLPTPEPIS---------------LVNLRAKPKGARFTSCFGNLIQRS 124
           RLRKSA+SPASPY+ TPEPI                LVNL  KPKG RFTSCFGNLIQRS
Sbjct: 62  RLRKSARSPASPYIRTPEPIPLKNKQPIARSIAINLLVNLCGKPKGPRFTSCFGNLIQRS 121

Query: 125 RKALTSFQPKNXXXXXXXXXXXXXXXXXXXXI-------------RRIRLLKFTCT 153
            KAL SFQPK                                   RRIRLL FTCT
Sbjct: 122 YKALASFQPKKDRQKQNQSSGSTKNVNEVKNSESKSKNTIDKVKGRRIRLLTFTCT 177

[Close]

BLAST of Carg12046 vs. NCBI nr
Match: XP_008448775.1 (PREDICTED: uncharacterized protein LOC103490841 isoform X1 [Cucumis melo])

HSP 1 Score: 172.6 bits (436), Expect = 1.1e-39
Identity = 103/182 (56.59%), Postives = 113/182 (62.09%), Query Frame = 0


Query: 5   AKVSRENKVLVSVYTERQEPRVAVNRVQRDDVNKTVRNQWKKEIANKGYNRRTELLKYSQ 64
           A VS+ENKVLV+VY+E+QEPR+ VNR QR +VNK VRNQWK++ ANKGYNRRTELLKYSQ
Sbjct: 2   ATVSKENKVLVTVYSEKQEPRLPVNRYQRANVNKVVRNQWKQDTANKGYNRRTELLKYSQ 61

Query: 65  RLRKSAQSPASPYLPTPEPI---------------------SLVNLRAKPKGARFTSCFG 124
           RLRKSA+SPASPY+ TPEPI                     SLVNL  KPKG RFTSCFG
Sbjct: 62  RLRKSARSPASPYIRTPEPIPLKNKQPIARSIAINLVCTSFSLVNLCGKPKGPRFTSCFG 121

Query: 125 NLIQRSRKALTSFQPKNXXXXXXXXXXXXXXXXXXXXI-------------RRIRLLKFT 153
           NLIQRS KAL SFQPK                                   RRIRLL FT
Sbjct: 122 NLIQRSYKALASFQPKKDRQKQNQSSGSTKNVNEVKNSESKSKNTIDKVKGRRIRLLTFT 181

[Close]

BLAST of Carg12046 vs. TrEMBL
Match: tr|A0A0A0L6R0|A0A0A0L6R0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G017150 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 6.3e-41
Identity = 95/136 (69.85%), Postives = 105/136 (77.21%), Query Frame = 0


Query: 5   AKVSRENKVLVSVYTERQEPRVAVNRVQRDDVNKTVRNQWKKEIANKGYNRRTELLKYSQ 64
           A VS+ENKVLV+VY+E+QEPR+ VNR QRD+VNK VRNQWK++ ANKGYNRRTELLKYSQ
Sbjct: 2   ATVSKENKVLVTVYSEKQEPRLPVNRYQRDNVNKVVRNQWKQDTANKGYNRRTELLKYSQ 61

Query: 65  RLRKSAQSPASPYLPTPEPI---------------------SLVNLRAKPKGARFTSCFG 120
           RLRKSA+SPASPY+ TPEPI                     SLVNL  KPKG RFTSCFG
Sbjct: 62  RLRKSARSPASPYIRTPEPIPLKNKQPIARSIAINLVCTSFSLVNLCGKPKGPRFTSCFG 121

[Close]

BLAST of Carg12046 vs. TrEMBL
Match: tr|A0A1S3BL45|A0A1S3BL45_CUCME (uncharacterized protein LOC103490841 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490841 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 5.4e-40
Identity = 102/176 (57.95%), Postives = 112/176 (63.64%), Query Frame = 0


Query: 5   AKVSRENKVLVSVYTERQEPRVAVNRVQRDDVNKTVRNQWKKEIANKGYNRRTELLKYSQ 64
           A VS+ENKVLV+VY+E+QEPR+ VNR QR +VNK VRNQWK++ ANKGYNRRTELLKYSQ
Sbjct: 2   ATVSKENKVLVTVYSEKQEPRLPVNRYQRANVNKVVRNQWKQDTANKGYNRRTELLKYSQ 61

Query: 65  RLRKSAQSPASPYLPTPEPIS---------------LVNLRAKPKGARFTSCFGNLIQRS 124
           RLRKSA+SPASPY+ TPEPI                LVNL  KPKG RFTSCFGNLIQRS
Sbjct: 62  RLRKSARSPASPYIRTPEPIPLKNKQPIARSIAINLLVNLCGKPKGPRFTSCFGNLIQRS 121

Query: 125 RKALTSFQPKNXXXXXXXXXXXXXXXXXXXXI-------------RRIRLLKFTCT 153
            KAL SFQPK                                   RRIRLL FTCT
Sbjct: 122 YKALASFQPKKDRQKQNQSSGSTKNVNEVKNSESKSKNTIDKVKGRRIRLLTFTCT 177

[Close]

BLAST of Carg12046 vs. TrEMBL
Match: tr|A0A1S3BKH3|A0A1S3BKH3_CUCME (uncharacterized protein LOC103490841 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490841 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 7.0e-40
Identity = 103/182 (56.59%), Postives = 113/182 (62.09%), Query Frame = 0


Query: 5   AKVSRENKVLVSVYTERQEPRVAVNRVQRDDVNKTVRNQWKKEIANKGYNRRTELLKYSQ 64
           A VS+ENKVLV+VY+E+QEPR+ VNR QR +VNK VRNQWK++ ANKGYNRRTELLKYSQ
Sbjct: 2   ATVSKENKVLVTVYSEKQEPRLPVNRYQRANVNKVVRNQWKQDTANKGYNRRTELLKYSQ 61

Query: 65  RLRKSAQSPASPYLPTPEPI---------------------SLVNLRAKPKGARFTSCFG 124
           RLRKSA+SPASPY+ TPEPI                     SLVNL  KPKG RFTSCFG
Sbjct: 62  RLRKSARSPASPYIRTPEPIPLKNKQPIARSIAINLVCTSFSLVNLCGKPKGPRFTSCFG 121

Query: 125 NLIQRSRKALTSFQPKNXXXXXXXXXXXXXXXXXXXXI-------------RRIRLLKFT 153
           NLIQRS KAL SFQPK                                   RRIRLL FT
Sbjct: 122 NLIQRSYKALASFQPKKDRQKQNQSSGSTKNVNEVKNSESKSKNTIDKVKGRRIRLLTFT 181

[Close]

BLAST of Carg12046 vs. TrEMBL
Match: tr|A0A061GAZ6|A0A061GAZ6_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_015850 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.3e-06
Identity = 50/128 (39.06%), Postives = 71/128 (55.47%), Query Frame = 0


Query: 9   RENKVLVSVYTERQEPRVAVNRVQRDDVNKTVRNQWKKEI-----ANKGYNRRTELLKYS 68
           ++  VLV+VY E+    V+ N  Q            K+E+     A KGYNRR ELL YS
Sbjct: 27  KDMAVLVTVYAEKPRRSVSSNH-QXXXXXXXXXXXXKQELIKHGGAGKGYNRRAELLHYS 86

Query: 69  QRLRKSAQSPASPYLPTPEPIS---------LVNLRAKPKGARFTSCFGN---LIQRSRK 120
           QRLR+SA+S AS  L + +P+S         +V+++ KPK +R  +CF N   LI R  +
Sbjct: 87  QRLRESARSAASTALQS-KPVSSNDQQASNKIVSVQRKPKCSRTPACFDNWGILIPRFLR 146

The following BLAST results are available for this feature:

BLAST of Carg12046 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011650375.1	7.3e-41	72.31	PREDICTED: uncharacterized protein LOC105434777 isoform X2 [Cucumis sativus]	[more]
KGN55821.1	9.6e-41	69.85	hypothetical protein Csa_3G017150 [Cucumis sativus]	[more]
XP_011650374.1	9.6e-41	69.85	PREDICTED: uncharacterized protein LOC105434777 isoform X1 [Cucumis sativus]	[more]
XP_008448776.1	8.1e-40	57.95	PREDICTED: uncharacterized protein LOC103490841 isoform X2 [Cucumis melo]	[more]
XP_008448775.1	1.1e-39	56.59	PREDICTED: uncharacterized protein LOC103490841 isoform X1 [Cucumis melo]	[more]

BLAST of Carg12046 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg12046 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg12046 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L6R0\|A0A0A0L6R0_CUCSA	6.3e-41	69.85	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G017150 PE=4 SV=1	[more]
tr\|A0A1S3BL45\|A0A1S3BL45_CUCME	5.4e-40	57.95	uncharacterized protein LOC103490841 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S3BKH3\|A0A1S3BKH3_CUCME	7.0e-40	56.59	uncharacterized protein LOC103490841 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A061GAZ6\|A0A061GAZ6_THECC	1.3e-06	39.06	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_015850 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg12046-RA	Carg12046-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 112..139
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 112..135

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg12046	Csa3G017150	Cucumber (Chinese Long) v2	carcuB0592
Carg12046	CSPI03G02250	Wild cucumber (PI 183967)	carcpiB0597
Carg12046	Cucsa.321340	Cucumber (Gy14) v1	carcgyB0642
Carg12046	CmaCh06G008150	Cucurbita maxima (Rimu)	carcmaB0791
Carg12046	Cp4.1LG08g07120	Cucurbita pepo (Zucchini)	carcpeB0808
Carg12046	CsaV3_3G002280	Cucumber (Chinese Long) v3	carcucB0599
Carg12046	Bhi11G000070	Wax gourd	carwgoB0670

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg12046	Silver-seed gourd	carcarB520
Carg12046	Silver-seed gourd	carcarB521
Carg12046	Cucumber (Gy14) v2	carcgybB0567
Carg12046	Cucumber (Gy14) v2	carcgybB0568
Carg12046	Cucumber (Gy14) v1	carcgyB0641
Carg12046	Cucurbita maxima (Rimu)	carcmaB0786
Carg12046	Cucurbita maxima (Rimu)	carcmaB0788
Carg12046	Cucurbita maxima (Rimu)	carcmaB0789
Carg12046	Cucurbita moschata (Rifu)	carcmoB0766
Carg12046	Cucurbita moschata (Rifu)	carcmoB0768
Carg12046	Cucurbita moschata (Rifu)	carcmoB0770
Carg12046	Cucurbita pepo (Zucchini)	carcpeB0802
Carg12046	Cucurbita pepo (Zucchini)	carcpeB0804
Carg12046	Wild cucumber (PI 183967)	carcpiB0598
Carg12046	Cucumber (Chinese Long) v2	carcuB0593
Carg12046	Cucumber (Chinese Long) v3	carcucB0600
Carg12046	Bottle gourd (USVL1VR-Ls)	carlsiB512
Carg12046	Bottle gourd (USVL1VR-Ls)	carlsiB513
Carg12046	Melon (DHL92) v3.5.1	carmeB0568
Carg12046	Melon (DHL92) v3.5.1	carmeB0570
Carg12046	Melon (DHL92) v3.6.1	carmedB0575
Carg12046	Melon (DHL92) v3.6.1	carmedB0577
Carg12046	Watermelon (Charleston Gray)	carwcgB0548
Carg12046	Watermelon (Charleston Gray)	carwcgB0549
Carg12046	Watermelon (97103) v1	carwmB0560
Carg12046	Watermelon (97103) v1	carwmB0562
Carg12046	Watermelon (97103) v2	carwmbB0586