Cp4.1LG08g06870 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG08g06870
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptiontRNA-splicing endonuclease subunit Sen54
LocationCp4.1LG08 : 5254731 .. 5257812 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTATGATAATGCTTAAGATCATCAAATCTCAATCAAGACTGCTTGACATCATCAGTCTGCTCGATGGCATTCCACATGCTTTTGCTTTTTATCGTCATCTCATCTCTTTTGATGATAACATTTGTTTCAACATCCTTGCTCTGATAACAAATCTTGATTCTGACTCTCAATCGAACCACATCAAAATAAATAATTAAAGTAGGAAAAATGAAATAAATAACGAGATAACTATATATTTTATAAGTTTGAAATGCTAAGTAAGTTCCTAAATTGCCTTGCGGAAAAAAAGAAAATATATATCGATGTAAAATAAACAAAAAAGAAAAATAAGTAAACCCTACGCCCCGTTTCCATCCTCCTCTCCCAGTTTTGCTTTCCTGCTCGTCCGTTGTTGCCGCAGTCGCCCGTCCGATTCGCACGGCAACCAGGTTTTTTTTTGTCCCTTCATCTCTCTTAACTTCCGACTTCCGCCACGCCCCCACCGCCACGCCAATTCCGCCTTCTGTTACCAAATGAAATTTCAGAATTAGGAACCGTGCCATGTTAATATCTTGCAATTTTAGTAGTTTTGGGTCGTTATTTCTCAATGTATTATGTAATTGGAGTACCATTTCCATTCCCTGAACGATGAGTTTTGATATTTGATTAGGAGTTTTCTGATGGAGGCTACGGATTGGGAAATATCTTCAGGAGGGGCTAGTGATGATGACGATAATTTCGAGCAAGACATAAAAGAAGAAGAAGAATGTCTTTGTTCATCCGGGAACATGCGAAAGTTGCAATTCAGGTTGAGGATTTCAAGAATTTAGACTCCTCCAAATCCTTCAATAGGATGATGCTGTTTTCTTAGAAATATCTTCAATATTTTTGCTCTGTCTCCAGGAAGCATGCTTCAACTGCTCGCTGGAATGATGAAATGGGAATGGCGGAAGTTTTGGAGAACAAGGGTAGCCTTTGGACGACATCTGGCATTGTACGTTGTGGCAAGATTTATTGTTCCATTGAGGAAACTTTGTAGGTTAACTATGGTTTTATTATGGTTTGTTATCCCTATCGTTTTTGATGTTGATCACAACATTTTTTTTTTGGGAGTTCTTACCAAAAAATAAAACAACATTTTTTGGGGAGTTATTCTCTTCCACATTGTTTTAGTGTGATTCCTATAACATACTGTAATATAGTGAAAAAGAAATGAAAATGGAAGTTTTTCTGTCATTTTTTTGTTGCTTTATAGTCGTCTTTTGGGAGCCTTATTTAGAACATTACATTAGAAATAAAGGGAAGAAACTCAAGCTTACAGTATGCAGGAGGAAGCACTAGTAGTAGCCTTTTGTGTTTTGGTAAAGAAAGGAAATCATCATTGTTTAAGTACTAATTCTTTTTCTAGCATCAATGAAATTTTTATTAAGCTTATTTGTGTTCGTATATATGATTTTATCACTTTTCTTTTCTATCGTTTTACATTCACTTGGGCAATGTTTCTTTAATGTGTCTCTTATTTTTATAAAGTTAGAAGCTTGTTGCCTTAAATTGTGTTTTGTGCTCTGTAAATGTTGATAGTAGTATGAACTTGGCGCTAAAATAGAGTTTTACAAGCAGAAAATTTAGGATTGTGTTCATTTTTTAGTCATTCGGATGACAACTTTTAAGCATGCTATCAAACATTCCTTTCTATATGTTCAGATTTCTTATTGAAGTTGGGGCTTTACATCTTCTGGATCATGATAATTCAAGTCTTTCTCTGAAAGATGTATACAAGAAGGTAGCTGAAGGAAAAAGTGAATGCATTTGGGAGCAGTTTGAGGTTTATAGGCACCTCAAATCCCTTGGTTATATTGTTGGAAAGCATAAAGTTCCATGGTCTGTGAAGGGTGCTAGGAATGGCGGCGATATTTCTTCTCGAAGTTCTATTGAAAACAAAGGATCAACAGATTTTGGATCAGAAGACGAGAAGTCGATCTGTGAACTTATAGATGCCATTCAGCTCAATGAAGTGACACCCATTTTTGATGTTTATCTTCCACATAGCAAGTTTAGAAAGTCCTCTCCTGGTGATCCAAATTTTATGGTCTGCTTGACTAGGTAAGTTCACTTGTCAAAAATCCATGTAACTTGCTTATTGTTCTGTGTCTGGTTGGGTTATATTATTATTTCTTCTCNCTAAAAAAAAAAAAAAAAAAATGAATTGCACCTGACTTACTTTTTGATAATTTGCTTAATCTAAATGTCAATAATGGCAACACCAACACCAACTAGAGGACAATAGTTTTGACCCTAAGATAGTATGTGCACTACAACTTGTGTGCAAATATTTGTAAACTACACTTATTGTGTATTTTGGTATTCCTTTTGAAAAAGGAAGGTATGGAAGCAGTTTTTCTATAAGCACTCTTAAGTACCTTTATTTATTCATTCATACACTTTCACTTTTCAGTCATCCATAAAGGGTTTTTAGTAGGAATGTCAAACACACTTAGATTGGTCCCATTTCTATGGCTGTGAAATTGTTTACTCAATATATCAGCTTCATTTTTAGCCGTCTCTGAGTATTTAGTTTCATTCTGGAAATAACACCAATATGAGGTCAAGAATAGGCTGTGCCTTCTTTAAATAACACCATTATCAGGTCTATGATAGGCTTCAACTTGTGTCGTTTCTTTCTTTTGCGAAAGTCTATGCATTACTTAGTTTCGAGTTTATCTGATCCTTTAATTACTGTCGTATAAATCTTTTTTATAGGGGATATCCACCTCCAAAAACAGATATTGAAGTTATTGAAAGAAAATCAGGAGGTATACCAATGAAATATTGTCACGTTGAACATGGACGTGTCTGTTTCTTTTCATTTGATAAGGTGGAGCTGCCCGTCTTACCTTGACATTGTTGTGGATTGGTCATGGTCAACTAGTATATTATGCTATTCAAAGATTTAATTTATTGGATTTGTGTTTGGTATGTGATTTGAATCCTATTTTATGATTTCAGACGTGTGTAGGAATAGAAAGAATACAGATTAGGAGAGTTTGGTGGCAATTTGCTAACTTGACATGTAATTATTTTTAAATCTCATTTTATGCGTTT

mRNA sequence

TTTATGATAATGCTTAAGATCATCAAATCTCAATCAAGACTGCTTGACATCATCAGTCTGCTCGATGGCATTCCACATGCTTTTGCTTTTTATCGTCATCTCATCTCTTTTGATGATAACATTTGTTTCAACATCCTTGCTCTGATAACAAATCTTGATTCTGACTCTCAATCGAACCACATCAAAATAAATAATTAAAGTAGGAAAAATGAAATAAATAACGAGATAACTATATATTTTATAAGTTTGAAATGCTAAGTAAGTTCCTAAATTGCCTTGCGGAAAAAAAGAAAATATATATCGATGTAAAATAAACAAAAAAGAAAAATAAGTAAACCCTACGCCCCGTTTCCATCCTCCTCTCCCAGTTTTGCTTTCCTGCTCGTCCGTTGTTGCCGCAGTCGCCCGTCCGATTCGCACGGCAACCAGGAGTTTTCTGATGGAGGCTACGGATTGGGAAATATCTTCAGGAGGGGCTAGTGATGATGACGATAATTTCGAGCAAGACATAAAAGAAGAAGAAGAATGTCTTTGTTCATCCGGGAACATGCGAAAGTTGCAATTCAGGAAGCATGCTTCAACTGCTCGCTGGAATGATGAAATGGGAATGGCGGAAGTTTTGGAGAACAAGGGTAGCCTTTGGACGACATCTGGCATTGTACGTTGTGGCAAGATTTATTGTTCCATTGAGGAAACTTTATTTCTTATTGAAGTTGGGGCTTTACATCTTCTGGATCATGATAATTCAAGTCTTTCTCTGAAAGATGTATACAAGAAGGTAGCTGAAGGAAAAAGTGAATGCATTTGGGAGCAGTTTGAGGTTTATAGGCACCTCAAATCCCTTGGTTATATTGTTGGAAAGCATAAAGTTCCATGGTCTGTGAAGGGTGCTAGGAATGGCGGCGATATTTCTTCTCGAAGTTCTATTGAAAACAAAGGATCAACAGATTTTGGATCAGAAGACGAGAAGTCGATCTGTGAACTTATAGATGCCATTCAGCTCAATGAAGTGACACCCATTTTTGATGTTTATCTTCCACATAGCAAGTTTAGAAAGTCCTCTCCTGGTGATCCAAATTTTATGGTCTGCTTGACTAGGGGATATCCACCTCCAAAAACAGATATTGAAGTTATTGAAAGAAAATCAGGAGGTATACCAATGAAATATTGTCACGTTGAACATGGACGTGTCTGTTTCTTTTCATTTGATAAGGTGGAGCTGCCCGTCTTACCTTGACATTGTTGTGGATTGGTCATGGTCAACTAGTATATTATGCTATTCAAAGATTTAATTTATTGGATTTGTGTTTGGTATGTGATTTGAATCCTATTTTATGATTTCAGACGTGTGTAGGAATAGAAAGAATACAGATTAGGAGAGTTTGGTGGCAATTTGCTAACTTGACATGTAATTATTTTTAAATCTCATTTTATGCGTTT

Coding sequence (CDS)

ATGGAGGCTACGGATTGGGAAATATCTTCAGGAGGGGCTAGTGATGATGACGATAATTTCGAGCAAGACATAAAAGAAGAAGAAGAATGTCTTTGTTCATCCGGGAACATGCGAAAGTTGCAATTCAGGAAGCATGCTTCAACTGCTCGCTGGAATGATGAAATGGGAATGGCGGAAGTTTTGGAGAACAAGGGTAGCCTTTGGACGACATCTGGCATTGTACGTTGTGGCAAGATTTATTGTTCCATTGAGGAAACTTTATTTCTTATTGAAGTTGGGGCTTTACATCTTCTGGATCATGATAATTCAAGTCTTTCTCTGAAAGATGTATACAAGAAGGTAGCTGAAGGAAAAAGTGAATGCATTTGGGAGCAGTTTGAGGTTTATAGGCACCTCAAATCCCTTGGTTATATTGTTGGAAAGCATAAAGTTCCATGGTCTGTGAAGGGTGCTAGGAATGGCGGCGATATTTCTTCTCGAAGTTCTATTGAAAACAAAGGATCAACAGATTTTGGATCAGAAGACGAGAAGTCGATCTGTGAACTTATAGATGCCATTCAGCTCAATGAAGTGACACCCATTTTTGATGTTTATCTTCCACATAGCAAGTTTAGAAAGTCCTCTCCTGGTGATCCAAATTTTATGGTCTGCTTGACTAGGGGATATCCACCTCCAAAAACAGATATTGAAGTTATTGAAAGAAAATCAGGAGGTATACCAATGAAATATTGTCACGTTGAACATGGACGTGTCTGTTTCTTTTCATTTGATAAGGTGGAGCTGCCCGTCTTACCTTGA

Protein sequence

MEATDWEISSGGASDDDDNFEQDIKEEEECLCSSGNMRKLQFRKHASTARWNDEMGMAEVLENKGSLWTTSGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKSECIWEQFEVYRHLKSLGYIVGKHKVPWSVKGARNGGDISSRSSIENKGSTDFGSEDEKSICELIDAIQLNEVTPIFDVYLPHSKFRKSSPGDPNFMVCLTRGYPPPKTDIEVIERKSGGIPMKYCHVEHGRVCFFSFDKVELPVLP
Homology
[Close]
BLAST of Cp4.1LG08g06870 vs. Swiss-Prot
Match: SEN54_HUMAN (tRNA-splicing endonuclease subunit Sen54 OS=Homo sapiens GN=TSEN54 PE=1 SV=3)

HSP 1 Score: 60.8 bits (146), Expect = 2.5e-08
Identity = 31/91 (34.07%), Postives = 49/91 (53.85%), Query Frame = 1 

Query: 49  ARWNDEMGMAEVLENKGSLWTTSGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLK 108
           A W  E G  E+    G  W T G    G+     EE L+L+E G++HL  H +  LS++
Sbjct: 80  AEWRPEEGFVELKSPAGKFWQTMGFSEQGRQRLHPEEALYLLECGSIHLF-HQDLPLSIQ 139

Query: 109 DVYKKVAEGKSECIWEQFEVYRHLKSLGYIV 140
           + Y+ +    +   + Q++V+ HLK LGY+V
Sbjct: 140 EAYQLLLTDHT-VTFLQYQVFSHLKRLGYVV 168

[Close]
BLAST of Cp4.1LG08g06870 vs. TrEMBL
Match: A0A0A0KXV5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G334710 PE=4 SV=1)

HSP 1 Score: 464.2 bits (1193), Expect = 1.1e-127
Identity = 222/267 (83.15%), Postives = 246/267 (92.13%), Query Frame = 1 

Query: 1   MEATDWEISSGGASD--DDDNFEQDIKEEEECLCSSGNMRKLQFRKHASTARWNDEMGMA 60
           MEAT+WE SSGGASD  D+DN+EQDI +EEECL +SG +RKLQFRKHASTARWND+MGMA
Sbjct: 1   MEATNWESSSGGASDTGDEDNYEQDINDEEECLSASGCLRKLQFRKHASTARWNDQMGMA 60

Query: 61  EVLENKGSLWTTSGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGK 120
           EVLENKGSLWTT+GIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEG+
Sbjct: 61  EVLENKGSLWTTTGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGR 120

Query: 121 SECIWEQFEVYRHLKSLGYIVGKHKVPWSVKGARNGGDISSRSSIENKGSTDFGSEDEKS 180
           S  +WEQFEVYRHLKSLGYIVGKH+VPWS+K  RN  DISS SS ENKG++D  S+DE+S
Sbjct: 121 SGRLWEQFEVYRHLKSLGYIVGKHRVPWSLKNVRNDCDISSPSSTENKGASDVKSDDEQS 180

Query: 181 ICELIDAIQLNEVTPIFDVYLPHSKFRKSSPGDPNFMVCLTRGYPPPKTDIEVIERKSGG 240
           IC L++AIQL+EVTPIFDV+LPH+KFRKSSPGDPNFMVCLTRGYPP K +IEV+ER S G
Sbjct: 181 ICRLLNAIQLDEVTPIFDVFLPHNKFRKSSPGDPNFMVCLTRGYPPSKEEIEVLERTSRG 240

Query: 241 IPMKYCHVEHGRVCFFSFDKVELPVLP 266
           IPMKYCHVEHGRVCFFSFDKVELP+LP
Sbjct: 241 IPMKYCHVEHGRVCFFSFDKVELPLLP 267

[Close]
BLAST of Cp4.1LG08g06870 vs. TrEMBL
Match: D7THT2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g08930 PE=4 SV=1)

HSP 1 Score: 310.1 bits (793), Expect = 2.7e-81
Identity = 152/259 (58.69%), Postives = 194/259 (74.90%), Query Frame = 1 

Query: 7   EISSGGASDDDDNFEQDIKEEEECLCSSGNMRKLQFRKHASTARWNDEMGMAEVLENKGS 66
           +I   GASD +  + QD  +EEE   +S ++ KLQFRK  S A WND M MAEV+E KG 
Sbjct: 25  DIMEDGASDSEI-YLQDANDEEEHYYTSSSISKLQFRKDVSKAIWNDAMRMAEVVEMKGK 84

Query: 67  LWTTSGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKSECIWEQF 126
           +WTT+G++  GKIYCSIEETLFL E+GALHLLD ++  +SLK +Y KV++GK  C WE F
Sbjct: 85  MWTTTGMLHSGKIYCSIEETLFLAELGALHLLDDNDVPISLKGIYDKVSQGKCGCCWESF 144

Query: 127 EVYRHLKSLGYIVGKHKVPWSVKGARNGGDISSRSSIENKGSTDFGSEDEKSICELIDAI 186
           E YRHLKSLGYIVG+H +PW+ KGA+   D S + + E    TD GSE+E S  EL++ +
Sbjct: 145 EAYRHLKSLGYIVGRHGIPWTSKGAKTCLD-SHQGTPEGNSRTDEGSEEENSTIELVNNM 204

Query: 187 QLNEVTPIFDVYLPHSKFRKSSPGDPNFMVCLTRGYPPPKTDIEVIERKSGGIPMKYCHV 246
            + EV  +FDVYLP+SKFRKSSPGDP+F++CLTRG+PP KT+IE +ER+ G IP K+ HV
Sbjct: 205 HITEVKLLFDVYLPNSKFRKSSPGDPSFVLCLTRGHPPLKTEIEDLERRCGSIPFKFFHV 264

Query: 247 EHGRVCFFSFDKVELPVLP 266
            HGRV FFSF++VELPVLP
Sbjct: 265 SHGRVSFFSFNRVELPVLP 281

[Close]
BLAST of Cp4.1LG08g06870 vs. TrEMBL
Match: A0A059D747_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B02734 PE=4 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 9.4e-79
Identity = 150/266 (56.39%), Postives = 193/266 (72.56%), Query Frame = 1 

Query: 1   MEATDWEISSGGASDDDDNFEQDIKEEEECLCSSGNMRKLQFRKHASTARWNDEMGMAEV 60
           ME  DW+    G S D +  EQD+K+EEE   +S +  KLQFRK  S ARWN  + MAEV
Sbjct: 1   MECEDWD----GLSSDSELLEQDLKDEEEYNYTSNSSSKLQFRKVTSVARWNSRVRMAEV 60

Query: 61  LENKGSLWTTSGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKSE 120
           +E KG LWTT+GIVR GK+YCSIEETLFL+E+GAL LL  ++ S+SL+ +Y+++AE K  
Sbjct: 61  VERKGQLWTTTGIVRSGKLYCSIEETLFLMEIGALLLLSENDESISLETMYQQLAEEKDG 120

Query: 121 CIWEQFEVYRHLKSLGYIVGKHKVPWSVKGA-RNGGDISSRSSIENKGSTDFGSEDEKSI 180
           C WE +EVYRHLKSLGYIVG+H +PWS+K   RN G +SS  + E+        +D  S+
Sbjct: 121 CFWELYEVYRHLKSLGYIVGRHGIPWSMKSVKRNTGTVSSEGTSESLEVQ--SPQDCNSV 180

Query: 181 CELIDAIQLNEVTPIFDVYLPHSKFRKSSPGDPNFMVCLTRGYPPPKTDIEVIERKSGGI 240
            E +  + LNE+  +FDVYLP+ KFRKSSPGDP++++ L RG PP K +IE IER+ GGI
Sbjct: 181 IERLIKMDLNELKLVFDVYLPNGKFRKSSPGDPSYILSLIRGQPPSKIEIEAIERQCGGI 240

Query: 241 PMKYCHVEHGRVCFFSFDKVELPVLP 266
           P+K+C VEHGRV F+SF KVELPVLP
Sbjct: 241 PLKFCLVEHGRVSFYSFSKVELPVLP 260

[Close]
BLAST of Cp4.1LG08g06870 vs. TrEMBL
Match: A0A061EXT8_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_024598 PE=4 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 2.7e-78
Identity = 152/268 (56.72%), Postives = 194/268 (72.39%), Query Frame = 1 

Query: 1   MEATDWEISSGGASDDDDNFEQDIKEE--EECLCSSGNMRKLQFRKHASTARWNDEMGMA 60
           M+A DWE  S     D++ + QD  E+  EE   SSG + KLQFRK  S ARW +++ MA
Sbjct: 1   MDAKDWESCS-----DNEIYLQDRSEDDGEESYYSSGFLSKLQFRKDISKARWINDLAMA 60

Query: 61  EVLENKGSLWTTSGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGK 120
           EV+E KG +W T GIVR GK YC IEETLFLIE+GALHLLD +   LSLK+VY+K+++ +
Sbjct: 61  EVVEKKGKMWVTMGIVRSGKTYCLIEETLFLIEIGALHLLDENGICLSLKEVYEKLSD-E 120

Query: 121 SECIWEQFEVYRHLKSLGYIVGKHKVPWSVKGAR-NGGDISSRSSIENKGSTDFGSEDEK 180
           S C WE FE+YRHLKSLGYIVG+H +PWSVKG +   G  S + S E     +   +D  
Sbjct: 121 SGCYWELFEIYRHLKSLGYIVGRHGIPWSVKGLKIKTGTCSLQGSEERNELLEMEPKDTS 180

Query: 181 SICELIDAIQLNEVTPIFDVYLPHSKFRKSSPGDPNFMVCLTRGYPPPKTDIEVIERKSG 240
            I +L D +Q+NEV+P FDVYLP+S+FRKSSPGDP+F + L+RG PP K +IE +ERK G
Sbjct: 181 IIIDLFDNMQINEVSPAFDVYLPNSRFRKSSPGDPSFFLYLSRGNPPSKVEIEALERKQG 240

Query: 241 GIPMKYCHVEHGRVCFFSFDKVELPVLP 266
            +P+K+CHVE+GRV FFSFD+VEL VLP
Sbjct: 241 VVPLKFCHVENGRVSFFSFDRVELAVLP 262

[Close]
BLAST of Cp4.1LG08g06870 vs. TrEMBL
Match: A0A0D2NG12_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G227800 PE=4 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 3.0e-77
Identity = 146/269 (54.28%), Postives = 195/269 (72.49%), Query Frame = 1 

Query: 1   MEATDWEISSGGASDDDDNFEQDIKE---EEECLCSSGNMRKLQFRKHASTARWNDEMGM 60
           M + DW     G+  D++++ QD  E   EE+C  SSG + KLQFRK  S ARW D++ M
Sbjct: 1   MGSDDW-----GSCSDNEDYLQDRNEDDDEEDCY-SSGFLSKLQFRKDISKARWVDDLAM 60

Query: 61  AEVLENKGSLWTTSGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEG 120
           AEV+E KG +W T GIVR G  YCSIEETLFLIE+GALH+LD ++  LSLK++Y+K++ G
Sbjct: 61  AEVVEKKGKMWVTMGIVRNGNTYCSIEETLFLIEIGALHVLDGNDIHLSLKELYEKLSNG 120

Query: 121 KSECIWEQFEVYRHLKSLGYIVGKHKVPWSVKGAR-NGGDISSRSSIENKGSTDFGSEDE 180
           KS C WE FEVY+HL+SLGY+VG+H +PWSVKG +   G  S   S ++    +   +DE
Sbjct: 121 KSGCYWELFEVYKHLRSLGYVVGRHGIPWSVKGQQIQSGTCSLEGSQDSNEMLEMEPKDE 180

Query: 181 KSICELIDAIQLNEVTPIFDVYLPHSKFRKSSPGDPNFMVCLTRGYPPPKTDIEVIERKS 240
            S+ EL + +Q+ +V+P F+VYLP+SKFRKSSPGDP+F++ ++R  PP + +IE +ERK 
Sbjct: 181 NSVIELFNNMQITDVSPAFNVYLPNSKFRKSSPGDPSFVLYISRCSPPSRVEIEALERKH 240

Query: 241 GGIPMKYCHVEHGRVCFFSFDKVELPVLP 266
           G IP K+CHVE+GRV FFSF K ELPVLP
Sbjct: 241 GAIPFKFCHVENGRVSFFSFAKTELPVLP 263

[Close]
BLAST of Cp4.1LG08g06870 vs. TAIR10
Match: AT3G57360.1 (AT3G57360.1 unknown protein)

HSP 1 Score: 234.2 bits (596), Expect = 9.4e-62
Identity = 121/266 (45.49%), Postives = 174/266 (65.41%), Query Frame = 1 

Query: 1   MEATDWEISSGGASDDDDNFEQDIKEEEECLCSSGNMRKLQFRKHASTARWNDEMGMAEV 60
           ME  DWE SS  +S+++  F  D  EE     S G++ KLQFR  +S ARW  E+GMAEV
Sbjct: 1   MEEKDWEASS--SSENEGGFPNDDDEEFH---SGGSVPKLQFRVGSSKARWITELGMAEV 60

Query: 61  LENKGSLWTTSGIVRCGKIYCSIEETLFLIEVGALHLL-DHDNSSLSLKDVYKKVAEGKS 120
              +G LWTT+GI+R GK YC IEE L+L E+G L +L + D+  + LKD+Y+K+AE KS
Sbjct: 61  EVKRGKLWTTTGIIRSGKTYCFIEEALYLSEIGELQILGNEDDIVIPLKDLYEKIAEEKS 120

Query: 121 ECIWEQFEVYRHLKSLGYIVGKHKVPWSVK-GARNGGDISSRSSIENKGSTDFGSEDEKS 180
            C WE +EVYR+LK LGYI+G+H V W++K  AR  G+  S  + E     D       +
Sbjct: 121 GCSWENYEVYRYLKGLGYILGRHGVSWTLKDAARPNGEEESACAGECPADND-------T 180

Query: 181 ICELIDAIQLNEVTPIFDVYLPHSKFRKSSPGDPNFMVCLTRGYPPPKTDIEVIERKSGG 240
           + +L+  +Q+ +   +FDVYLP+S+F+KSSPG+P+F+ C +   PP K DI+V++++   
Sbjct: 181 VTKLLGDMQICDAKAVFDVYLPNSRFKKSSPGEPSFVACFSGDSPPSKEDIKVLQKRIAA 240

Query: 241 IPMKYCHVEHGRVCFFSFDKVELPVL 265
            P+ +CH+  GR  FFSF  ++LPVL
Sbjct: 241 -PLTFCHIAQGRASFFSFSSIDLPVL 253

[Close]
BLAST of Cp4.1LG08g06870 vs. TAIR10
Match: AT3G02370.2 (AT3G02370.2 unknown protein)

HSP 1 Score: 173.3 bits (438), Expect = 2.0e-43
Identity = 84/175 (48.00%), Postives = 120/175 (68.57%), Query Frame = 1 

Query: 57  MAEVLENKGSLWTTSGIVRCGKIYCSIEETLFLIEVGALHLL-DHDNSSLSLKDVYKKVA 116
           MAEV   +G LWTT+GI+R GK YC IEE L+L E+G L LL D D+  +SLKD+Y ++A
Sbjct: 1   MAEVEVKRGKLWTTTGIIRTGKTYCFIEEALYLSEIGELQLLGDEDDVVISLKDLYGEIA 60

Query: 117 EGKSECIWEQFEVYRHLKSLGYIVGKHKVPWSVKGARNGGDISSRSSIENKGSTDFGSED 176
           EGK  C WE +EVYR+LK LGYI+G+H VPW+ K A N    +     E+  + +F  +D
Sbjct: 61  EGKYGCCWENYEVYRYLKGLGYILGRHGVPWTTKYAVN---TTPSDEDESLCAAEF-FQD 120

Query: 177 EKSICELIDAIQLNEVTPIFDVYLPHSKFRKSSPGDPNFMVCLTRGYPPPKTDIE 231
             S+ +L+  + + +  P+FDVYLP+S+F+KSSPG+P+F+ C +   PP K +I+
Sbjct: 121 RDSVTKLLSDMHICDARPVFDVYLPNSQFKKSSPGEPSFVTCFSGDSPPSKEEIK 171

[Close]
BLAST of Cp4.1LG08g06870 vs. NCBI nr
Match: gi|778694019|ref|XP_011653726.1| (PREDICTED: uncharacterized protein LOC101210680 isoform X1 [Cucumis sativus])

HSP 1 Score: 464.2 bits (1193), Expect = 1.6e-127
Identity = 222/267 (83.15%), Postives = 246/267 (92.13%), Query Frame = 1 

Query: 1   MEATDWEISSGGASD--DDDNFEQDIKEEEECLCSSGNMRKLQFRKHASTARWNDEMGMA 60
           MEAT+WE SSGGASD  D+DN+EQDI +EEECL +SG +RKLQFRKHASTARWND+MGMA
Sbjct: 1   MEATNWESSSGGASDTGDEDNYEQDINDEEECLSASGCLRKLQFRKHASTARWNDQMGMA 60

Query: 61  EVLENKGSLWTTSGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGK 120
           EVLENKGSLWTT+GIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEG+
Sbjct: 61  EVLENKGSLWTTTGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGR 120

Query: 121 SECIWEQFEVYRHLKSLGYIVGKHKVPWSVKGARNGGDISSRSSIENKGSTDFGSEDEKS 180
           S  +WEQFEVYRHLKSLGYIVGKH+VPWS+K  RN  DISS SS ENKG++D  S+DE+S
Sbjct: 121 SGRLWEQFEVYRHLKSLGYIVGKHRVPWSLKNVRNDCDISSPSSTENKGASDVKSDDEQS 180

Query: 181 ICELIDAIQLNEVTPIFDVYLPHSKFRKSSPGDPNFMVCLTRGYPPPKTDIEVIERKSGG 240
           IC L++AIQL+EVTPIFDV+LPH+KFRKSSPGDPNFMVCLTRGYPP K +IEV+ER S G
Sbjct: 181 ICRLLNAIQLDEVTPIFDVFLPHNKFRKSSPGDPNFMVCLTRGYPPSKEEIEVLERTSRG 240

Query: 241 IPMKYCHVEHGRVCFFSFDKVELPVLP 266
           IPMKYCHVEHGRVCFFSFDKVELP+LP
Sbjct: 241 IPMKYCHVEHGRVCFFSFDKVELPLLP 267

[Close]
BLAST of Cp4.1LG08g06870 vs. NCBI nr
Match: gi|659126611|ref|XP_008463274.1| (PREDICTED: uncharacterized protein LOC103501474 [Cucumis melo])

HSP 1 Score: 451.8 bits (1161), Expect = 8.1e-124
Identity = 217/267 (81.27%), Postives = 241/267 (90.26%), Query Frame = 1 

Query: 1   MEATDWEISSGGASD--DDDNFEQDIKEEEECLCSSGNMRKLQFRKHASTARWNDEMGMA 60
           MEAT+W+ SSGGASD  D+DN+EQDI +EEECL +S  +RKLQFRKHASTARWND+MGMA
Sbjct: 1   MEATNWKSSSGGASDTGDEDNYEQDINDEEECLSASRCLRKLQFRKHASTARWNDQMGMA 60

Query: 61  EVLENKGSLWTTSGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGK 120
           EVLENKGSLWTT+GIVRCGKIYC+IEETLFLIEVGALHLLDHDNS+LSLKDVYKKVAEG+
Sbjct: 61  EVLENKGSLWTTTGIVRCGKIYCTIEETLFLIEVGALHLLDHDNSTLSLKDVYKKVAEGR 120

Query: 121 SECIWEQFEVYRHLKSLGYIVGKHKVPWSVKGARNGGDISSRSSIENKGSTDFGSEDEKS 180
           S CIWEQFEVYRHLKSLGYIVGKHKVPWS+K  RN  D+SS SS E KG +D  SEDE+ 
Sbjct: 121 SGCIWEQFEVYRHLKSLGYIVGKHKVPWSLKNVRNDCDLSSPSSTEKKGVSDVKSEDEQL 180

Query: 181 ICELIDAIQLNEVTPIFDVYLPHSKFRKSSPGDPNFMVCLTRGYPPPKTDIEVIERKSGG 240
           I  L++AIQL+EVTPIFDV+LPH+KFRKSSPGDPNFMVCL RGYPP K +IEV+ER S G
Sbjct: 181 ISGLLNAIQLDEVTPIFDVFLPHNKFRKSSPGDPNFMVCLARGYPPSKEEIEVLERTSRG 240

Query: 241 IPMKYCHVEHGRVCFFSFDKVELPVLP 266
           IPMKYCHVEHGRVCFFSFDKVELP+LP
Sbjct: 241 IPMKYCHVEHGRVCFFSFDKVELPLLP 267

[Close]
BLAST of Cp4.1LG08g06870 vs. NCBI nr
Match: gi|297739626|emb|CBI29808.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 310.1 bits (793), Expect = 3.8e-81
Identity = 152/259 (58.69%), Postives = 194/259 (74.90%), Query Frame = 1 

Query: 7   EISSGGASDDDDNFEQDIKEEEECLCSSGNMRKLQFRKHASTARWNDEMGMAEVLENKGS 66
           +I   GASD +  + QD  +EEE   +S ++ KLQFRK  S A WND M MAEV+E KG 
Sbjct: 25  DIMEDGASDSEI-YLQDANDEEEHYYTSSSISKLQFRKDVSKAIWNDAMRMAEVVEMKGK 84

Query: 67  LWTTSGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKSECIWEQF 126
           +WTT+G++  GKIYCSIEETLFL E+GALHLLD ++  +SLK +Y KV++GK  C WE F
Sbjct: 85  MWTTTGMLHSGKIYCSIEETLFLAELGALHLLDDNDVPISLKGIYDKVSQGKCGCCWESF 144

Query: 127 EVYRHLKSLGYIVGKHKVPWSVKGARNGGDISSRSSIENKGSTDFGSEDEKSICELIDAI 186
           E YRHLKSLGYIVG+H +PW+ KGA+   D S + + E    TD GSE+E S  EL++ +
Sbjct: 145 EAYRHLKSLGYIVGRHGIPWTSKGAKTCLD-SHQGTPEGNSRTDEGSEEENSTIELVNNM 204

Query: 187 QLNEVTPIFDVYLPHSKFRKSSPGDPNFMVCLTRGYPPPKTDIEVIERKSGGIPMKYCHV 246
            + EV  +FDVYLP+SKFRKSSPGDP+F++CLTRG+PP KT+IE +ER+ G IP K+ HV
Sbjct: 205 HITEVKLLFDVYLPNSKFRKSSPGDPSFVLCLTRGHPPLKTEIEDLERRCGSIPFKFFHV 264

Query: 247 EHGRVCFFSFDKVELPVLP 266
            HGRV FFSF++VELPVLP
Sbjct: 265 SHGRVSFFSFNRVELPVLP 281

[Close]
BLAST of Cp4.1LG08g06870 vs. NCBI nr
Match: gi|731399816|ref|XP_010653757.1| (PREDICTED: uncharacterized protein LOC100257347 isoform X2 [Vitis vinifera])

HSP 1 Score: 310.1 bits (793), Expect = 3.8e-81
Identity = 152/259 (58.69%), Postives = 194/259 (74.90%), Query Frame = 1 

Query: 7   EISSGGASDDDDNFEQDIKEEEECLCSSGNMRKLQFRKHASTARWNDEMGMAEVLENKGS 66
           +I   GASD +  + QD  +EEE   +S ++ KLQFRK  S A WND M MAEV+E KG 
Sbjct: 14  DIMEDGASDSEI-YLQDANDEEEHYYTSSSISKLQFRKDVSKAIWNDAMRMAEVVEMKGK 73

Query: 67  LWTTSGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKSECIWEQF 126
           +WTT+G++  GKIYCSIEETLFL E+GALHLLD ++  +SLK +Y KV++GK  C WE F
Sbjct: 74  MWTTTGMLHSGKIYCSIEETLFLAELGALHLLDDNDVPISLKGIYDKVSQGKCGCCWESF 133

Query: 127 EVYRHLKSLGYIVGKHKVPWSVKGARNGGDISSRSSIENKGSTDFGSEDEKSICELIDAI 186
           E YRHLKSLGYIVG+H +PW+ KGA+   D S + + E    TD GSE+E S  EL++ +
Sbjct: 134 EAYRHLKSLGYIVGRHGIPWTSKGAKTCLD-SHQGTPEGNSRTDEGSEEENSTIELVNNM 193

Query: 187 QLNEVTPIFDVYLPHSKFRKSSPGDPNFMVCLTRGYPPPKTDIEVIERKSGGIPMKYCHV 246
            + EV  +FDVYLP+SKFRKSSPGDP+F++CLTRG+PP KT+IE +ER+ G IP K+ HV
Sbjct: 194 HITEVKLLFDVYLPNSKFRKSSPGDPSFVLCLTRGHPPLKTEIEDLERRCGSIPFKFFHV 253

Query: 247 EHGRVCFFSFDKVELPVLP 266
            HGRV FFSF++VELPVLP
Sbjct: 254 SHGRVSFFSFNRVELPVLP 270

[Close]
BLAST of Cp4.1LG08g06870 vs. NCBI nr
Match: gi|731399814|ref|XP_010653756.1| (PREDICTED: uncharacterized protein LOC100257347 isoform X1 [Vitis vinifera])

HSP 1 Score: 310.1 bits (793), Expect = 3.8e-81
Identity = 152/259 (58.69%), Postives = 194/259 (74.90%), Query Frame = 1 

Query: 7   EISSGGASDDDDNFEQDIKEEEECLCSSGNMRKLQFRKHASTARWNDEMGMAEVLENKGS 66
           +I   GASD +  + QD  +EEE   +S ++ KLQFRK  S A WND M MAEV+E KG 
Sbjct: 38  DIMEDGASDSEI-YLQDANDEEEHYYTSSSISKLQFRKDVSKAIWNDAMRMAEVVEMKGK 97

Query: 67  LWTTSGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKSECIWEQF 126
           +WTT+G++  GKIYCSIEETLFL E+GALHLLD ++  +SLK +Y KV++GK  C WE F
Sbjct: 98  MWTTTGMLHSGKIYCSIEETLFLAELGALHLLDDNDVPISLKGIYDKVSQGKCGCCWESF 157

Query: 127 EVYRHLKSLGYIVGKHKVPWSVKGARNGGDISSRSSIENKGSTDFGSEDEKSICELIDAI 186
           E YRHLKSLGYIVG+H +PW+ KGA+   D S + + E    TD GSE+E S  EL++ +
Sbjct: 158 EAYRHLKSLGYIVGRHGIPWTSKGAKTCLD-SHQGTPEGNSRTDEGSEEENSTIELVNNM 217

Query: 187 QLNEVTPIFDVYLPHSKFRKSSPGDPNFMVCLTRGYPPPKTDIEVIERKSGGIPMKYCHV 246
            + EV  +FDVYLP+SKFRKSSPGDP+F++CLTRG+PP KT+IE +ER+ G IP K+ HV
Sbjct: 218 HITEVKLLFDVYLPNSKFRKSSPGDPSFVLCLTRGHPPLKTEIEDLERRCGSIPFKFFHV 277

Query: 247 EHGRVCFFSFDKVELPVLP 266
            HGRV FFSF++VELPVLP
Sbjct: 278 SHGRVSFFSFNRVELPVLP 294

The following BLAST results are available for this feature:
BLAST of Cp4.1LG08g06870 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SEN54_HUMAN2.5e-0834.07tRNA-splicing endonuclease subunit Sen54 OS=Homo sapiens GN=TSEN54 PE=1 SV=3[more]
BLAST of Cp4.1LG08g06870 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KXV5_CUCSA1.1e-12783.15Uncharacterized protein OS=Cucumis sativus GN=Csa_4G334710 PE=4 SV=1[more]
D7THT2_VITVI2.7e-8158.69Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g08930 PE=4 SV=... [more]
A0A059D747_EUCGR9.4e-7956.39Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B02734 PE=4 SV=1[more]
A0A061EXT8_THECC2.7e-7856.72Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_024598 PE=4 SV=1[more]
A0A0D2NG12_GOSRA3.0e-7754.28Uncharacterized protein OS=Gossypium raimondii GN=B456_002G227800 PE=4 SV=1[more]
BLAST of Cp4.1LG08g06870 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G57360.19.4e-6245.49 unknown protein[more]
AT3G02370.22.0e-4348.00 unknown protein[more]
BLAST of Cp4.1LG08g06870 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778694019|ref|XP_011653726.1|1.6e-12783.15PREDICTED: uncharacterized protein LOC101210680 isoform X1 [Cucumis sativus][more]
gi|659126611|ref|XP_008463274.1|8.1e-12481.27PREDICTED: uncharacterized protein LOC103501474 [Cucumis melo][more]
gi|297739626|emb|CBI29808.3|3.8e-8158.69unnamed protein product [Vitis vinifera][more]
gi|731399816|ref|XP_010653757.1|3.8e-8158.69PREDICTED: uncharacterized protein LOC100257347 isoform X2 [Vitis vinifera][more]
gi|731399814|ref|XP_010653756.1|3.8e-8158.69PREDICTED: uncharacterized protein LOC100257347 isoform X1 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR024337tRNA_splic_suSen54
IPR024336tRNA_splic_suSen54_N
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG08g06870.1Cp4.1LG08g06870.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR024336tRNA-splicing endonuclease, subunit Sen54, N-terminalPFAMPF12928tRNA_int_end_N2coord: 41..97
score: 4.
IPR024337tRNA-splicing endonuclease, subunit Sen54PANTHERPTHR21027TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN54coord: 36..265
score: 1.6

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG08g06870CmaCh06G009000Cucurbita maxima (Rimu)cmacpeB855
Cp4.1LG08g06870CmoCh06G009260Cucurbita moschata (Rifu)cmocpeB796
Cp4.1LG08g06870Carg26084Silver-seed gourdcarcpeB0445
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG08g06870Cucumber (Gy14) v1cgycpeB0899
Cp4.1LG08g06870Cucurbita maxima (Rimu)cmacpeB295
Cp4.1LG08g06870Cucurbita moschata (Rifu)cmocpeB258
Cp4.1LG08g06870Wild cucumber (PI 183967)cpecpiB855
Cp4.1LG08g06870Cucumber (Chinese Long) v2cpecuB853
Cp4.1LG08g06870Bottle gourd (USVL1VR-Ls)cpelsiB710
Cp4.1LG08g06870Watermelon (Charleston Gray)cpewcgB774
Cp4.1LG08g06870Watermelon (97103) v1cpewmB836
Cp4.1LG08g06870Melon (DHL92) v3.5.1cpemeB800
Cp4.1LG08g06870Cucumber (Gy14) v2cgybcpeB451
Cp4.1LG08g06870Melon (DHL92) v3.6.1cpemedB941
Cp4.1LG08g06870Cucumber (Chinese Long) v3cpecucB1050
Cp4.1LG08g06870Cucumber (Chinese Long) v3cpecucB1058
Cp4.1LG08g06870Wax gourdcpewgoB1081
Cp4.1LG08g06870Cucurbita pepo (Zucchini)cpecpeB486