CmoCh06G009260 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh06G009260
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	tRNA-splicing endonuclease subunit Sen54
Location	Cmo_Chr06 : 6716618 .. 6719696 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTGCTTTCCTGCTCGTCCGTTGTTGCCGCAGTCGCCCATCCGATTCGCACGGCAATCAGGTTTTTTTTTTTTGTCCCTTCATCTCTCTTAATGTCCGACTGCCGCCACGCCCCCACCGCCACGCCGATTCCTCCTTCTGTTACCAAATGAAATTTCAGAATTAGGAACCGTGCCATGTTAATATCTTGCAATTTTAGTAGTTTTGGGTCGTTATTTCTCAATGTATTATGTAATTGGAGTACCATTTCCATTCCCTGAACGAGGACTTTTGATATTTGATTAGGAGTTTTCTGATGGAGGCTACGGATTGGGAAATATCTTCAGGAGGAGCTAGTGATGATGACGATAATTTCGAGCAAGACATAAAAGAAGAAGAAGAATGTCTTTGTTCATCCGGGAACATGCGAAAGTTGCAATTCAGGTTGAGGATTTCAAGAATTTAGACTCCTCCAAATCCTTCAATAGGATGATGCTATTTTCTTAGAAATATCTTCAATATTTTTGATCTGTCTCCAGGAAGCATGCTTCAACTGCTCGATGGAATGATGAAATGGGAATGGCGGAAGTTTTGGAGAACAAGGGTAGCCTTTGGACGACATCTGGCATTGTACGTTGTGGCAAGATTTATTGTTCCATTGAGGAAACTTTGTAGGTTAAACTATGGTTTTATTATGGTTTGTTATCCCTATCGTTTTTGATATCGATCGCAACATTTTTTTTTTTTTGGGAGTTCTTGCCAAAAAATAAAACAACATTTTTTGGGGAGTTATTCTCTTCCACATTGTCTTAGTGTGATTCCTATAACATACTGTAATATAGTGAAAAAGAAATGAAAATGGAAGTTTTTCTGTCATTTTTTTGTTGCTTTATAGTCGTCTTTTGGGAGCCTTATTTAGAACATTACATTAGAAATAAAGGGAAGAAACTCATGCTTACAGTATGCAGGAGGAAGCACTATTAGTAGCCTTTTGTGTTTTGGTAAAGAAAGGAAATCATCATTGTTTAAGTACTAATTCTTTTTCTAGCATCAATGAAATTTTATTAAGCTTATTTGTGTTCGTATATATGATTTTATCACTTGCTCTTCTTTTTTATGGTTTTACATTCACTTGGGCAATGTTTCTTTCATGTGTCTCTTATTTTTATGAAGTTAGAAGCGTGTTGCCTTAAATTGTGTTTTGTGCTCTGTAAATGTTGATAGTAGTATGAACTTGGCGCTAAAATAGAGTTTTACAAGCAGAAAATAGCCTTTTACTTTTTTTTTCTTTTTTTTTTTTGGTTTTTTAAATAGAAATATTTAGGATTGTGTTCATTTTTTAGTCATTCGGATGACAACTTTTAAGCATGCTATCAAACATTCCTTTCTATATGTTCAGATTTCTTATTGAAGTTGGGGCTTTACATCTTCTGGATCATGATAATTCAAGTCTTTCTCTGAAAGATGTATACAAGAAGGTAGCTGAAGGAAAAAGTGAATGCATTTGGGAGCAGTTTGAGGTTTATAGGCACCTCAAATCCCTTGGTTATATTGTTGGAAAGCATAAAGTTCCATGGTCTGTGAAGGGTGCTAAGAATGGCGGCGATATTTCTTCTCAAAGTTCTATTGAAAACAAAGGATCAACAGATTTTGGATCAGAAGACGAGAAGTCGATCTGTGAACTTATAGATGCCATTCAGCTCAATGAAGTGACACCCATTTTTGATGTTTATCTTCCACATAGCAAGTTTAGAAAGTCCTCTCCTGGTGATCCAAATTTTATGGTCTGCTTGACTAGGTAAGTTCACTTGTCAAAAATCCATGTAACTTGCTTATTGTTCTGTGTCTGGTTGGGTTATTATTATTATTTCTTTTCATGTTTTTTGTTGTAAACTTCTAGGCAAGGCATAGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAAAAAGAATTGCACCTGACTTACTTTTTGATAATTTGCTTAATCTAAATGTCAATAATGGCAACATCAACACCAACTAGAGGACAATAGTTTTGACCCTAAGATAGTATGTGCACTACAACTTGTGTGCAAATATTTGTAAACTACACTTATTGTGTATTTTGGTATTCCTTTTGAAAAAGTAAGGTATGGAAGCAGTTTTTCTATAAGCACTCTTAAGTACCTTTATTTATTCATTCATACACTTTCACTTTTCAGTCATCCATAAGGACTTTTAGAAGGAATGTCAAACACACTTAGATTGGTACCATTTCTATGGCTGTGAAATTGTTTACTCAATATATCAGCTTCATTTTTAGCCGCCTGAGTATTTAGTTTCATTCTGGAAATAACACCAATATGAGGTCAAGAATAGGCTGCCTTCTTTAAATAACACCATTATCAGGGTCTACAATAGGCTTCAACTTGTGTCGTTTCTTTCTTTTGTGAAAGTCTATGCATTACTTAGTTTCGAGTTTATCTGATCCTTTAATTACTATCATATAAATCTTTTTTATAGGGGATATCCACCTCCAAAAACAGATATTGAAGTTATTGAAAGAAAATCAGGAGGTATACCAATGAAATATTGTCATGTTGAACATGGACGTGTCTGTTTCTTTTCATTTGATAAGGTGGAGCTGCCCGTCTTACCTTGACATTGTTGTGGATTGGTCATGGTCAACTAGTGTATTAGGGCATACCTCTGGAGCTCAGGCTCTGCTATTCAAAGGTTTAATTTATTGGATTTGTGTTTGGTATATGTGACTTGAATCCTATTTTATGATTTCAGATGTGTGTAGGAATAGAAAGAATACAGATTAGGAGAGTTTGGTGGCAATTTGATAACTTGACATGTACTTATTTTTAAATCTCATTTCAT

mRNA sequence

TTTTGCTTTCCTGCTCGTCCGTTGTTGCCGCAGTCGCCCATCCGATTCGCACGGCAATCAGGAGTTTTCTGATGGAGGCTACGGATTGGGAAATATCTTCAGGAGGAGCTAGTGATGATGACGATAATTTCGAGCAAGACATAAAAGAAGAAGAAGAATGTCTTTGTTCATCCGGGAACATGCGAAAGTTGCAATTCAGGAAGCATGCTTCAACTGCTCGATGGAATGATGAAATGGGAATGGCGGAAGTTTTGGAGAACAAGGGTAGCCTTTGGACGACATCTGGCATTGTACGTTGTGGCAAGATTTATTGTTCCATTGAGGAAACTTTATTTCTTATTGAAGTTGGGGCTTTACATCTTCTGGATCATGATAATTCAAGTCTTTCTCTGAAAGATGTATACAAGAAGGTAGCTGAAGGAAAAAGTGAATGCATTTGGGAGCAGTTTGAGGTTTATAGGCACCTCAAATCCCTTGGTTATATTGTTGGAAAGCATAAAGTTCCATGGTCTGTGAAGGGTGCTAAGAATGGCGGCGATATTTCTTCTCAAAGTTCTATTGAAAACAAAGGATCAACAGATTTTGGATCAGAAGACGAGAAGTCGATCTGTGAACTTATAGATGCCATTCAGCTCAATGAAGTGACACCCATTTTTGATGTTTATCTTCCACATAGCAAGTTTAGAAAGTCCTCTCCTGGTGATCCAAATTTTATGGTCTGCTTGACTAGGGGATATCCACCTCCAAAAACAGATATTGAAGTTATTGAAAGAAAATCAGGAGGTATACCAATGAAATATTGTCATGTTGAACATGGACGTGTCTGTTTCTTTTCATTTGATAAGGTGGAGCTGCCCGTCTTACCTTGACATTGTTGTGGATTGGTCATGGTCAACTAGTGTATTAGGGCATACCTCTGGAGCTCAGGCTCTGCTATTCAAAGGTTTAATTTATTGGATTTGTGTTTGGTATATGTGACTTGAATCCTATTTTATGATTTCAGATGTGTGTAGGAATAGAAAGAATACAGATTAGGAGAGTTTGGTGGCAATTTGATAACTTGACATGTACTTATTTTTAAATCTCATTTCAT

Coding sequence (CDS)

ATGGAGGCTACGGATTGGGAAATATCTTCAGGAGGAGCTAGTGATGATGACGATAATTTCGAGCAAGACATAAAAGAAGAAGAAGAATGTCTTTGTTCATCCGGGAACATGCGAAAGTTGCAATTCAGGAAGCATGCTTCAACTGCTCGATGGAATGATGAAATGGGAATGGCGGAAGTTTTGGAGAACAAGGGTAGCCTTTGGACGACATCTGGCATTGTACGTTGTGGCAAGATTTATTGTTCCATTGAGGAAACTTTATTTCTTATTGAAGTTGGGGCTTTACATCTTCTGGATCATGATAATTCAAGTCTTTCTCTGAAAGATGTATACAAGAAGGTAGCTGAAGGAAAAAGTGAATGCATTTGGGAGCAGTTTGAGGTTTATAGGCACCTCAAATCCCTTGGTTATATTGTTGGAAAGCATAAAGTTCCATGGTCTGTGAAGGGTGCTAAGAATGGCGGCGATATTTCTTCTCAAAGTTCTATTGAAAACAAAGGATCAACAGATTTTGGATCAGAAGACGAGAAGTCGATCTGTGAACTTATAGATGCCATTCAGCTCAATGAAGTGACACCCATTTTTGATGTTTATCTTCCACATAGCAAGTTTAGAAAGTCCTCTCCTGGTGATCCAAATTTTATGGTCTGCTTGACTAGGGGATATCCACCTCCAAAAACAGATATTGAAGTTATTGAAAGAAAATCAGGAGGTATACCAATGAAATATTGTCATGTTGAACATGGACGTGTCTGTTTCTTTTCATTTGATAAGGTGGAGCTGCCCGTCTTACCTTGA

Homology

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BLAST of CmoCh06G009260 vs. Swiss-Prot
Match: SEN54_HUMAN (tRNA-splicing endonuclease subunit Sen54 OS=Homo sapiens GN=TSEN54 PE=1 SV=3)

HSP 1 Score: 60.8 bits (146), Expect = 2.5e-08
Identity = 31/91 (34.07%), Postives = 49/91 (53.85%), Query Frame = 1


Query: 49  ARWNDEMGMAEVLENKGSLWTTSGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLK 108
           A W  E G  E+    G  W T G    G+     EE L+L+E G++HL  H +  LS++
Sbjct: 80  AEWRPEEGFVELKSPAGKFWQTMGFSEQGRQRLHPEEALYLLECGSIHLF-HQDLPLSIQ 139

Query: 109 DVYKKVAEGKSECIWEQFEVYRHLKSLGYIV 140
           + Y+ +    +   + Q++V+ HLK LGY+V
Sbjct: 140 EAYQLLLTDHT-VTFLQYQVFSHLKRLGYVV 168

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BLAST of CmoCh06G009260 vs. TrEMBL
Match: A0A0A0KXV5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G334710 PE=4 SV=1)

HSP 1 Score: 462.6 bits (1189), Expect = 3.2e-127
Identity = 221/267 (82.77%), Postives = 246/267 (92.13%), Query Frame = 1


Query: 1   MEATDWEISSGGASD--DDDNFEQDIKEEEECLCSSGNMRKLQFRKHASTARWNDEMGMA 60
           MEAT+WE SSGGASD  D+DN+EQDI +EEECL +SG +RKLQFRKHASTARWND+MGMA
Sbjct: 1   MEATNWESSSGGASDTGDEDNYEQDINDEEECLSASGCLRKLQFRKHASTARWNDQMGMA 60

Query: 61  EVLENKGSLWTTSGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGK 120
           EVLENKGSLWTT+GIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEG+
Sbjct: 61  EVLENKGSLWTTTGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGR 120

Query: 121 SECIWEQFEVYRHLKSLGYIVGKHKVPWSVKGAKNGGDISSQSSIENKGSTDFGSEDEKS 180
           S  +WEQFEVYRHLKSLGYIVGKH+VPWS+K  +N  DISS SS ENKG++D  S+DE+S
Sbjct: 121 SGRLWEQFEVYRHLKSLGYIVGKHRVPWSLKNVRNDCDISSPSSTENKGASDVKSDDEQS 180

Query: 181 ICELIDAIQLNEVTPIFDVYLPHSKFRKSSPGDPNFMVCLTRGYPPPKTDIEVIERKSGG 240
           IC L++AIQL+EVTPIFDV+LPH+KFRKSSPGDPNFMVCLTRGYPP K +IEV+ER S G
Sbjct: 181 ICRLLNAIQLDEVTPIFDVFLPHNKFRKSSPGDPNFMVCLTRGYPPSKEEIEVLERTSRG 240

Query: 241 IPMKYCHVEHGRVCFFSFDKVELPVLP 266
           IPMKYCHVEHGRVCFFSFDKVELP+LP
Sbjct: 241 IPMKYCHVEHGRVCFFSFDKVELPLLP 267

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BLAST of CmoCh06G009260 vs. TrEMBL
Match: D7THT2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g08930 PE=4 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 7.0e-82
Identity = 154/259 (59.46%), Postives = 194/259 (74.90%), Query Frame = 1


Query: 7   EISSGGASDDDDNFEQDIKEEEECLCSSGNMRKLQFRKHASTARWNDEMGMAEVLENKGS 66
           +I   GASD +  + QD  +EEE   +S ++ KLQFRK  S A WND M MAEV+E KG 
Sbjct: 25  DIMEDGASDSEI-YLQDANDEEEHYYTSSSISKLQFRKDVSKAIWNDAMRMAEVVEMKGK 84

Query: 67  LWTTSGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKSECIWEQF 126
           +WTT+G++  GKIYCSIEETLFL E+GALHLLD ++  +SLK +Y KV++GK  C WE F
Sbjct: 85  MWTTTGMLHSGKIYCSIEETLFLAELGALHLLDDNDVPISLKGIYDKVSQGKCGCCWESF 144

Query: 127 EVYRHLKSLGYIVGKHKVPWSVKGAKNGGDISSQSSIENKGSTDFGSEDEKSICELIDAI 186
           E YRHLKSLGYIVG+H +PW+ KGAK   D S Q + E    TD GSE+E S  EL++ +
Sbjct: 145 EAYRHLKSLGYIVGRHGIPWTSKGAKTCLD-SHQGTPEGNSRTDEGSEEENSTIELVNNM 204

Query: 187 QLNEVTPIFDVYLPHSKFRKSSPGDPNFMVCLTRGYPPPKTDIEVIERKSGGIPMKYCHV 246
            + EV  +FDVYLP+SKFRKSSPGDP+F++CLTRG+PP KT+IE +ER+ G IP K+ HV
Sbjct: 205 HITEVKLLFDVYLPNSKFRKSSPGDPSFVLCLTRGHPPLKTEIEDLERRCGSIPFKFFHV 264

Query: 247 EHGRVCFFSFDKVELPVLP 266
            HGRV FFSF++VELPVLP
Sbjct: 265 SHGRVSFFSFNRVELPVLP 281

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BLAST of CmoCh06G009260 vs. TrEMBL
Match: A0A061EXT8_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_024598 PE=4 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 4.2e-79
Identity = 154/268 (57.46%), Postives = 194/268 (72.39%), Query Frame = 1


Query: 1   MEATDWEISSGGASDDDDNFEQDIKEE--EECLCSSGNMRKLQFRKHASTARWNDEMGMA 60
           M+A DWE  S     D++ + QD  E+  EE   SSG + KLQFRK  S ARW +++ MA
Sbjct: 1   MDAKDWESCS-----DNEIYLQDRSEDDGEESYYSSGFLSKLQFRKDISKARWINDLAMA 60

Query: 61  EVLENKGSLWTTSGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGK 120
           EV+E KG +W T GIVR GK YC IEETLFLIE+GALHLLD +   LSLK+VY+K+++ +
Sbjct: 61  EVVEKKGKMWVTMGIVRSGKTYCLIEETLFLIEIGALHLLDENGICLSLKEVYEKLSD-E 120

Query: 121 SECIWEQFEVYRHLKSLGYIVGKHKVPWSVKGAK-NGGDISSQSSIENKGSTDFGSEDEK 180
           S C WE FE+YRHLKSLGYIVG+H +PWSVKG K   G  S Q S E     +   +D  
Sbjct: 121 SGCYWELFEIYRHLKSLGYIVGRHGIPWSVKGLKIKTGTCSLQGSEERNELLEMEPKDTS 180

Query: 181 SICELIDAIQLNEVTPIFDVYLPHSKFRKSSPGDPNFMVCLTRGYPPPKTDIEVIERKSG 240
            I +L D +Q+NEV+P FDVYLP+S+FRKSSPGDP+F + L+RG PP K +IE +ERK G
Sbjct: 181 IIIDLFDNMQINEVSPAFDVYLPNSRFRKSSPGDPSFFLYLSRGNPPSKVEIEALERKQG 240

Query: 241 GIPMKYCHVEHGRVCFFSFDKVELPVLP 266
            +P+K+CHVE+GRV FFSFD+VEL VLP
Sbjct: 241 VVPLKFCHVENGRVSFFSFDRVELAVLP 262

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BLAST of CmoCh06G009260 vs. TrEMBL
Match: A0A059D747_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B02734 PE=4 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 9.4e-79
Identity = 150/266 (56.39%), Postives = 194/266 (72.93%), Query Frame = 1


Query: 1   MEATDWEISSGGASDDDDNFEQDIKEEEECLCSSGNMRKLQFRKHASTARWNDEMGMAEV 60
           ME  DW+    G S D +  EQD+K+EEE   +S +  KLQFRK  S ARWN  + MAEV
Sbjct: 1   MECEDWD----GLSSDSELLEQDLKDEEEYNYTSNSSSKLQFRKVTSVARWNSRVRMAEV 60

Query: 61  LENKGSLWTTSGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKSE 120
           +E KG LWTT+GIVR GK+YCSIEETLFL+E+GAL LL  ++ S+SL+ +Y+++AE K  
Sbjct: 61  VERKGQLWTTTGIVRSGKLYCSIEETLFLMEIGALLLLSENDESISLETMYQQLAEEKDG 120

Query: 121 CIWEQFEVYRHLKSLGYIVGKHKVPWSVKGAK-NGGDISSQSSIENKGSTDFGSEDEKSI 180
           C WE +EVYRHLKSLGYIVG+H +PWS+K  K N G +SS+ + E+        +D  S+
Sbjct: 121 CFWELYEVYRHLKSLGYIVGRHGIPWSMKSVKRNTGTVSSEGTSESLEVQ--SPQDCNSV 180

Query: 181 CELIDAIQLNEVTPIFDVYLPHSKFRKSSPGDPNFMVCLTRGYPPPKTDIEVIERKSGGI 240
            E +  + LNE+  +FDVYLP+ KFRKSSPGDP++++ L RG PP K +IE IER+ GGI
Sbjct: 181 IERLIKMDLNELKLVFDVYLPNGKFRKSSPGDPSYILSLIRGQPPSKIEIEAIERQCGGI 240

Query: 241 PMKYCHVEHGRVCFFSFDKVELPVLP 266
           P+K+C VEHGRV F+SF KVELPVLP
Sbjct: 241 PLKFCLVEHGRVSFYSFSKVELPVLP 260

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BLAST of CmoCh06G009260 vs. TrEMBL
Match: A0A0D2NG12_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G227800 PE=4 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 2.3e-77
Identity = 146/269 (54.28%), Postives = 196/269 (72.86%), Query Frame = 1


Query: 1   MEATDWEISSGGASDDDDNFEQDIKE---EEECLCSSGNMRKLQFRKHASTARWNDEMGM 60
           M + DW     G+  D++++ QD  E   EE+C  SSG + KLQFRK  S ARW D++ M
Sbjct: 1   MGSDDW-----GSCSDNEDYLQDRNEDDDEEDCY-SSGFLSKLQFRKDISKARWVDDLAM 60

Query: 61  AEVLENKGSLWTTSGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEG 120
           AEV+E KG +W T GIVR G  YCSIEETLFLIE+GALH+LD ++  LSLK++Y+K++ G
Sbjct: 61  AEVVEKKGKMWVTMGIVRNGNTYCSIEETLFLIEIGALHVLDGNDIHLSLKELYEKLSNG 120

Query: 121 KSECIWEQFEVYRHLKSLGYIVGKHKVPWSVKGAK-NGGDISSQSSIENKGSTDFGSEDE 180
           KS C WE FEVY+HL+SLGY+VG+H +PWSVKG +   G  S + S ++    +   +DE
Sbjct: 121 KSGCYWELFEVYKHLRSLGYVVGRHGIPWSVKGQQIQSGTCSLEGSQDSNEMLEMEPKDE 180

Query: 181 KSICELIDAIQLNEVTPIFDVYLPHSKFRKSSPGDPNFMVCLTRGYPPPKTDIEVIERKS 240
            S+ EL + +Q+ +V+P F+VYLP+SKFRKSSPGDP+F++ ++R  PP + +IE +ERK 
Sbjct: 181 NSVIELFNNMQITDVSPAFNVYLPNSKFRKSSPGDPSFVLYISRCSPPSRVEIEALERKH 240

Query: 241 GGIPMKYCHVEHGRVCFFSFDKVELPVLP 266
           G IP K+CHVE+GRV FFSF K ELPVLP
Sbjct: 241 GAIPFKFCHVENGRVSFFSFAKTELPVLP 263

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BLAST of CmoCh06G009260 vs. TAIR10
Match: AT3G57360.1 (AT3G57360.1 unknown protein)

HSP 1 Score: 233.0 bits (593), Expect = 2.1e-61
Identity = 118/265 (44.53%), Postives = 171/265 (64.53%), Query Frame = 1


Query: 1   MEATDWEISSGGASDDDDNFEQDIKEEEECLCSSGNMRKLQFRKHASTARWNDEMGMAEV 60
           ME  DWE SS  +S+++  F  D  EE     S G++ KLQFR  +S ARW  E+GMAEV
Sbjct: 1   MEEKDWEASS--SSENEGGFPNDDDEEFH---SGGSVPKLQFRVGSSKARWITELGMAEV 60

Query: 61  LENKGSLWTTSGIVRCGKIYCSIEETLFLIEVGALHLL-DHDNSSLSLKDVYKKVAEGKS 120
              +G LWTT+GI+R GK YC IEE L+L E+G L +L + D+  + LKD+Y+K+AE KS
Sbjct: 61  EVKRGKLWTTTGIIRSGKTYCFIEEALYLSEIGELQILGNEDDIVIPLKDLYEKIAEEKS 120

Query: 121 ECIWEQFEVYRHLKSLGYIVGKHKVPWSVKGAKNGGDISSQSSIENKGSTDFGSEDEKSI 180
            C WE +EVYR+LK LGYI+G+H V W++K      D +  +  E          D  ++
Sbjct: 121 GCSWENYEVYRYLKGLGYILGRHGVSWTLK------DAARPNGEEESACAGECPADNDTV 180

Query: 181 CELIDAIQLNEVTPIFDVYLPHSKFRKSSPGDPNFMVCLTRGYPPPKTDIEVIERKSGGI 240
            +L+  +Q+ +   +FDVYLP+S+F+KSSPG+P+F+ C +   PP K DI+V++++    
Sbjct: 181 TKLLGDMQICDAKAVFDVYLPNSRFKKSSPGEPSFVACFSGDSPPSKEDIKVLQKRIAA- 240

Query: 241 PMKYCHVEHGRVCFFSFDKVELPVL 265
           P+ +CH+  GR  FFSF  ++LPVL
Sbjct: 241 PLTFCHIAQGRASFFSFSSIDLPVL 253

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BLAST of CmoCh06G009260 vs. TAIR10
Match: AT3G02370.2 (AT3G02370.2 unknown protein)

HSP 1 Score: 173.7 bits (439), Expect = 1.5e-43
Identity = 84/175 (48.00%), Postives = 120/175 (68.57%), Query Frame = 1


Query: 57  MAEVLENKGSLWTTSGIVRCGKIYCSIEETLFLIEVGALHLL-DHDNSSLSLKDVYKKVA 116
           MAEV   +G LWTT+GI+R GK YC IEE L+L E+G L LL D D+  +SLKD+Y ++A
Sbjct: 1   MAEVEVKRGKLWTTTGIIRTGKTYCFIEEALYLSEIGELQLLGDEDDVVISLKDLYGEIA 60

Query: 117 EGKSECIWEQFEVYRHLKSLGYIVGKHKVPWSVKGAKNGGDISSQSSIENKGSTDFGSED 176
           EGK  C WE +EVYR+LK LGYI+G+H VPW+ K A N    +     E+  + +F  +D
Sbjct: 61  EGKYGCCWENYEVYRYLKGLGYILGRHGVPWTTKYAVN---TTPSDEDESLCAAEF-FQD 120

Query: 177 EKSICELIDAIQLNEVTPIFDVYLPHSKFRKSSPGDPNFMVCLTRGYPPPKTDIE 231
             S+ +L+  + + +  P+FDVYLP+S+F+KSSPG+P+F+ C +   PP K +I+
Sbjct: 121 RDSVTKLLSDMHICDARPVFDVYLPNSQFKKSSPGEPSFVTCFSGDSPPSKEEIK 171

[Close]

BLAST of CmoCh06G009260 vs. NCBI nr
Match: gi|778694019|ref|XP_011653726.1| (PREDICTED: uncharacterized protein LOC101210680 isoform X1 [Cucumis sativus])

HSP 1 Score: 462.6 bits (1189), Expect = 4.6e-127
Identity = 221/267 (82.77%), Postives = 246/267 (92.13%), Query Frame = 1


Query: 1   MEATDWEISSGGASD--DDDNFEQDIKEEEECLCSSGNMRKLQFRKHASTARWNDEMGMA 60
           MEAT+WE SSGGASD  D+DN+EQDI +EEECL +SG +RKLQFRKHASTARWND+MGMA
Sbjct: 1   MEATNWESSSGGASDTGDEDNYEQDINDEEECLSASGCLRKLQFRKHASTARWNDQMGMA 60

Query: 61  EVLENKGSLWTTSGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGK 120
           EVLENKGSLWTT+GIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEG+
Sbjct: 61  EVLENKGSLWTTTGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGR 120

Query: 121 SECIWEQFEVYRHLKSLGYIVGKHKVPWSVKGAKNGGDISSQSSIENKGSTDFGSEDEKS 180
           S  +WEQFEVYRHLKSLGYIVGKH+VPWS+K  +N  DISS SS ENKG++D  S+DE+S
Sbjct: 121 SGRLWEQFEVYRHLKSLGYIVGKHRVPWSLKNVRNDCDISSPSSTENKGASDVKSDDEQS 180

Query: 181 ICELIDAIQLNEVTPIFDVYLPHSKFRKSSPGDPNFMVCLTRGYPPPKTDIEVIERKSGG 240
           IC L++AIQL+EVTPIFDV+LPH+KFRKSSPGDPNFMVCLTRGYPP K +IEV+ER S G
Sbjct: 181 ICRLLNAIQLDEVTPIFDVFLPHNKFRKSSPGDPNFMVCLTRGYPPSKEEIEVLERTSRG 240

Query: 241 IPMKYCHVEHGRVCFFSFDKVELPVLP 266
           IPMKYCHVEHGRVCFFSFDKVELP+LP
Sbjct: 241 IPMKYCHVEHGRVCFFSFDKVELPLLP 267

[Close]

BLAST of CmoCh06G009260 vs. NCBI nr
Match: gi|659126611|ref|XP_008463274.1| (PREDICTED: uncharacterized protein LOC103501474 [Cucumis melo])

HSP 1 Score: 450.3 bits (1157), Expect = 2.4e-123
Identity = 216/267 (80.90%), Postives = 241/267 (90.26%), Query Frame = 1


Query: 1   MEATDWEISSGGASD--DDDNFEQDIKEEEECLCSSGNMRKLQFRKHASTARWNDEMGMA 60
           MEAT+W+ SSGGASD  D+DN+EQDI +EEECL +S  +RKLQFRKHASTARWND+MGMA
Sbjct: 1   MEATNWKSSSGGASDTGDEDNYEQDINDEEECLSASRCLRKLQFRKHASTARWNDQMGMA 60

Query: 61  EVLENKGSLWTTSGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGK 120
           EVLENKGSLWTT+GIVRCGKIYC+IEETLFLIEVGALHLLDHDNS+LSLKDVYKKVAEG+
Sbjct: 61  EVLENKGSLWTTTGIVRCGKIYCTIEETLFLIEVGALHLLDHDNSTLSLKDVYKKVAEGR 120

Query: 121 SECIWEQFEVYRHLKSLGYIVGKHKVPWSVKGAKNGGDISSQSSIENKGSTDFGSEDEKS 180
           S CIWEQFEVYRHLKSLGYIVGKHKVPWS+K  +N  D+SS SS E KG +D  SEDE+ 
Sbjct: 121 SGCIWEQFEVYRHLKSLGYIVGKHKVPWSLKNVRNDCDLSSPSSTEKKGVSDVKSEDEQL 180

Query: 181 ICELIDAIQLNEVTPIFDVYLPHSKFRKSSPGDPNFMVCLTRGYPPPKTDIEVIERKSGG 240
           I  L++AIQL+EVTPIFDV+LPH+KFRKSSPGDPNFMVCL RGYPP K +IEV+ER S G
Sbjct: 181 ISGLLNAIQLDEVTPIFDVFLPHNKFRKSSPGDPNFMVCLARGYPPSKEEIEVLERTSRG 240

Query: 241 IPMKYCHVEHGRVCFFSFDKVELPVLP 266
           IPMKYCHVEHGRVCFFSFDKVELP+LP
Sbjct: 241 IPMKYCHVEHGRVCFFSFDKVELPLLP 267

[Close]

BLAST of CmoCh06G009260 vs. NCBI nr
Match: gi|297739626|emb|CBI29808.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 312.0 bits (798), Expect = 1.0e-81
Identity = 154/259 (59.46%), Postives = 194/259 (74.90%), Query Frame = 1


Query: 7   EISSGGASDDDDNFEQDIKEEEECLCSSGNMRKLQFRKHASTARWNDEMGMAEVLENKGS 66
           +I   GASD +  + QD  +EEE   +S ++ KLQFRK  S A WND M MAEV+E KG 
Sbjct: 25  DIMEDGASDSEI-YLQDANDEEEHYYTSSSISKLQFRKDVSKAIWNDAMRMAEVVEMKGK 84

Query: 67  LWTTSGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKSECIWEQF 126
           +WTT+G++  GKIYCSIEETLFL E+GALHLLD ++  +SLK +Y KV++GK  C WE F
Sbjct: 85  MWTTTGMLHSGKIYCSIEETLFLAELGALHLLDDNDVPISLKGIYDKVSQGKCGCCWESF 144

Query: 127 EVYRHLKSLGYIVGKHKVPWSVKGAKNGGDISSQSSIENKGSTDFGSEDEKSICELIDAI 186
           E YRHLKSLGYIVG+H +PW+ KGAK   D S Q + E    TD GSE+E S  EL++ +
Sbjct: 145 EAYRHLKSLGYIVGRHGIPWTSKGAKTCLD-SHQGTPEGNSRTDEGSEEENSTIELVNNM 204

Query: 187 QLNEVTPIFDVYLPHSKFRKSSPGDPNFMVCLTRGYPPPKTDIEVIERKSGGIPMKYCHV 246
            + EV  +FDVYLP+SKFRKSSPGDP+F++CLTRG+PP KT+IE +ER+ G IP K+ HV
Sbjct: 205 HITEVKLLFDVYLPNSKFRKSSPGDPSFVLCLTRGHPPLKTEIEDLERRCGSIPFKFFHV 264

Query: 247 EHGRVCFFSFDKVELPVLP 266
            HGRV FFSF++VELPVLP
Sbjct: 265 SHGRVSFFSFNRVELPVLP 281

[Close]

BLAST of CmoCh06G009260 vs. NCBI nr
Match: gi|731399816|ref|XP_010653757.1| (PREDICTED: uncharacterized protein LOC100257347 isoform X2 [Vitis vinifera])

HSP 1 Score: 312.0 bits (798), Expect = 1.0e-81
Identity = 154/259 (59.46%), Postives = 194/259 (74.90%), Query Frame = 1


Query: 7   EISSGGASDDDDNFEQDIKEEEECLCSSGNMRKLQFRKHASTARWNDEMGMAEVLENKGS 66
           +I   GASD +  + QD  +EEE   +S ++ KLQFRK  S A WND M MAEV+E KG 
Sbjct: 14  DIMEDGASDSEI-YLQDANDEEEHYYTSSSISKLQFRKDVSKAIWNDAMRMAEVVEMKGK 73

Query: 67  LWTTSGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKSECIWEQF 126
           +WTT+G++  GKIYCSIEETLFL E+GALHLLD ++  +SLK +Y KV++GK  C WE F
Sbjct: 74  MWTTTGMLHSGKIYCSIEETLFLAELGALHLLDDNDVPISLKGIYDKVSQGKCGCCWESF 133

Query: 127 EVYRHLKSLGYIVGKHKVPWSVKGAKNGGDISSQSSIENKGSTDFGSEDEKSICELIDAI 186
           E YRHLKSLGYIVG+H +PW+ KGAK   D S Q + E    TD GSE+E S  EL++ +
Sbjct: 134 EAYRHLKSLGYIVGRHGIPWTSKGAKTCLD-SHQGTPEGNSRTDEGSEEENSTIELVNNM 193

Query: 187 QLNEVTPIFDVYLPHSKFRKSSPGDPNFMVCLTRGYPPPKTDIEVIERKSGGIPMKYCHV 246
            + EV  +FDVYLP+SKFRKSSPGDP+F++CLTRG+PP KT+IE +ER+ G IP K+ HV
Sbjct: 194 HITEVKLLFDVYLPNSKFRKSSPGDPSFVLCLTRGHPPLKTEIEDLERRCGSIPFKFFHV 253

Query: 247 EHGRVCFFSFDKVELPVLP 266
            HGRV FFSF++VELPVLP
Sbjct: 254 SHGRVSFFSFNRVELPVLP 270

[Close]

BLAST of CmoCh06G009260 vs. NCBI nr
Match: gi|731399814|ref|XP_010653756.1| (PREDICTED: uncharacterized protein LOC100257347 isoform X1 [Vitis vinifera])

HSP 1 Score: 312.0 bits (798), Expect = 1.0e-81
Identity = 154/259 (59.46%), Postives = 194/259 (74.90%), Query Frame = 1


Query: 7   EISSGGASDDDDNFEQDIKEEEECLCSSGNMRKLQFRKHASTARWNDEMGMAEVLENKGS 66
           +I   GASD +  + QD  +EEE   +S ++ KLQFRK  S A WND M MAEV+E KG 
Sbjct: 38  DIMEDGASDSEI-YLQDANDEEEHYYTSSSISKLQFRKDVSKAIWNDAMRMAEVVEMKGK 97

Query: 67  LWTTSGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKSECIWEQF 126
           +WTT+G++  GKIYCSIEETLFL E+GALHLLD ++  +SLK +Y KV++GK  C WE F
Sbjct: 98  MWTTTGMLHSGKIYCSIEETLFLAELGALHLLDDNDVPISLKGIYDKVSQGKCGCCWESF 157

Query: 127 EVYRHLKSLGYIVGKHKVPWSVKGAKNGGDISSQSSIENKGSTDFGSEDEKSICELIDAI 186
           E YRHLKSLGYIVG+H +PW+ KGAK   D S Q + E    TD GSE+E S  EL++ +
Sbjct: 158 EAYRHLKSLGYIVGRHGIPWTSKGAKTCLD-SHQGTPEGNSRTDEGSEEENSTIELVNNM 217

Query: 187 QLNEVTPIFDVYLPHSKFRKSSPGDPNFMVCLTRGYPPPKTDIEVIERKSGGIPMKYCHV 246
            + EV  +FDVYLP+SKFRKSSPGDP+F++CLTRG+PP KT+IE +ER+ G IP K+ HV
Sbjct: 218 HITEVKLLFDVYLPNSKFRKSSPGDPSFVLCLTRGHPPLKTEIEDLERRCGSIPFKFFHV 277

Query: 247 EHGRVCFFSFDKVELPVLP 266
            HGRV FFSF++VELPVLP
Sbjct: 278 SHGRVSFFSFNRVELPVLP 294

The following BLAST results are available for this feature:

BLAST of CmoCh06G009260 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SEN54_HUMAN	2.5e-08	34.07	tRNA-splicing endonuclease subunit Sen54 OS=Homo sapiens GN=TSEN54 PE=1 SV=3	[more]

BLAST of CmoCh06G009260 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KXV5_CUCSA	3.2e-127	82.77	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G334710 PE=4 SV=1	[more]
D7THT2_VITVI	7.0e-82	59.46	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g08930 PE=4 SV=...	[more]
A0A061EXT8_THECC	4.2e-79	57.46	Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_024598 PE=4 SV=1	[more]
A0A059D747_EUCGR	9.4e-79	56.39	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B02734 PE=4 SV=1	[more]
A0A0D2NG12_GOSRA	2.3e-77	54.28	Uncharacterized protein OS=Gossypium raimondii GN=B456_002G227800 PE=4 SV=1	[more]

BLAST of CmoCh06G009260 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G57360.1	2.1e-61	44.53	unknown protein	[more]
AT3G02370.2	1.5e-43	48.00	unknown protein	[more]

BLAST of CmoCh06G009260 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778694019\|ref\|XP_011653726.1\|	4.6e-127	82.77	PREDICTED: uncharacterized protein LOC101210680 isoform X1 [Cucumis sativus]	[more]
gi\|659126611\|ref\|XP_008463274.1\|	2.4e-123	80.90	PREDICTED: uncharacterized protein LOC103501474 [Cucumis melo]	[more]
gi\|297739626\|emb\|CBI29808.3\|	1.0e-81	59.46	unnamed protein product [Vitis vinifera]	[more]
gi\|731399816\|ref\|XP_010653757.1\|	1.0e-81	59.46	PREDICTED: uncharacterized protein LOC100257347 isoform X2 [Vitis vinifera]	[more]
gi\|731399814\|ref\|XP_010653756.1\|	1.0e-81	59.46	PREDICTED: uncharacterized protein LOC100257347 isoform X1 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR024336	tRNA_splic_suSen54_N
IPR024337	tRNA_splic_suSen54

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G009260.1	CmoCh06G009260.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024336	tRNA-splicing endonuclease, subunit Sen54, N-terminal	PFAM	PF12928	tRNA_int_end_N2	coord: 41..97 score: 4.
IPR024337	tRNA-splicing endonuclease, subunit Sen54	PANTHER	PTHR21027	TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN54	coord: 36..265 score: 3.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh06G009260	CmaCh06G009000	Cucurbita maxima (Rimu)	cmacmoB829
CmoCh06G009260	Cp4.1LG08g06870	Cucurbita pepo (Zucchini)	cmocpeB796
CmoCh06G009260	Bhi11G002396	Wax gourd	cmowgoB0991
CmoCh06G009260	Carg26084	Silver-seed gourd	carcmoB0438

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh06G009260	Cucurbita moschata (Rifu)	cmocmoB227
CmoCh06G009260	Cucumber (Gy14) v1	cgycmoB0944
CmoCh06G009260	Cucurbita maxima (Rimu)	cmacmoB274
CmoCh06G009260	Wild cucumber (PI 183967)	cmocpiB827
CmoCh06G009260	Cucumber (Chinese Long) v2	cmocuB819
CmoCh06G009260	Melon (DHL92) v3.5.1	cmomeB745
CmoCh06G009260	Watermelon (Charleston Gray)	cmowcgB726
CmoCh06G009260	Watermelon (97103) v1	cmowmB780
CmoCh06G009260	Cucurbita pepo (Zucchini)	cmocpeB789
CmoCh06G009260	Bottle gourd (USVL1VR-Ls)	cmolsiB745
CmoCh06G009260	Cucumber (Gy14) v2	cgybcmoB413
CmoCh06G009260	Melon (DHL92) v3.6.1	cmomedB847
CmoCh06G009260	Cucumber (Chinese Long) v3	cmocucB0965
CmoCh06G009260	Watermelon (97103) v2	cmowmbB815