Cp4.1LG08g06780 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG08g06780
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionE3 ubiquitin-protein ligase RING1-like
LocationCp4.1LG08 : 4953631 .. 4955414 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAAAAGGGGGCAACCTCAAAGAACAAATTTACATGGAAATACCAATAGGTCTTGAGATAGAGGAAAGCAAACCTAAAGTCTGTGAACTTGGGAAGATCATATTCTACATTGATTTAATTTGGAAATTGTTATTAGAAACTAGATTTCTCAATCTTCTTGCATCTTTTTATGAATGAAACACGCATGTGATGTGAAATTACCTATTTTGTGCTTTCATTAATTAAATCAAGAAATAAAAGGATAAAAGTCAGCCAAGATTATTGCGTTTTCTTAGTCAGCTAAGCACATAAGACTCAACCTCGAGAAGTTATTAAACATAAAATGCCGAGATATCTATATGTAGCAAACTAACAGTCTCATTACTTAAATAATGAGGAGTTTCATGGTTGAGACTTGCAGAGAAGAGAGGAAGGATGTCGAGTAGGAACACCCATTGGTGTTACAGATGTGAGCAGCCAGTTCAACTCCGTGGGCGGGACATGGTTTGCGCTAGCTGTAATGGAGGATTTGTTCAAGAACTCGATGAAATGATGGAAAGAGGTCCCCTTGATTTCTTTGGAGCCAATGGTCATGAATACCACAATCGGAGGCTTGGACTCCTGGAGCTTTTCTCAAACTTTATGAGGCAACGGTTGATAGACAGAAATGATATGAGGGGAAGGTTGGAATCTATTCCAGATCATGGTTCAGGATTTGGTCCTTGGTTGATCTTTGGTGGCCAAATTCCTGTTAGGTTGTCTGGACATGGTGGGTTTGAAGCCTTTTTTAATGGGGTTCCTGGAATTGGTGTGAGTAGGAGCAATGGTGGTGATTATTTTATTGGTCCTGGACTTGAAGAATTGTTTGAACAGCTTTCAGCAAACGACCGACGCGGACCACCCCCAGCATCTAGATCTTCAATCGATGCAATGCCTGTTGTTAAAATTACGCAAAGACACATCCGTTCGAATTCACACTGCCCTGTTTGCCAAGATAAATTTGAATTAGGGTCTGAAGCTAGGAAAATGCCATGTGACCATATGTATCATTCGGATTGTATAGTTCCCTGGCTTGTCCAGCACAACTCCTGCCCTGTTTGCCGCCAAGAGCTGCCTGCACAAGGGTCAGGTGGCAGCCACAGCTCATCTGGAAGCAACAATCTTAATCGAAACAGCCGAGAGAGGGAGAATAGTAGGACAAATCAAGGAAGGAGGAACCCATTTTCAAGTTTATGGCCATTCCGAGCGTCGAGTTCTGACTCAAACCATAGTGCGACCACTGGAAGCAGCTCGCCAGCCGTACATGAGAGCACCCAACACCAAACAGGGTATTCTGGATGGCCTTTCGACTAGCGTGAACGGTGGTGTTTTCATGAACTTGTTTGCACCAGTTTGTGATCTTGTTGTTTAAAATGAAGAAAGATAGTTCAACCCCCTGCTGTCCACTCCTTTGTATAATGATTAATAATGGACTTTGTGTGTGATGTAGATGACATTTTTCTCTGCCTTATCGATGCTGCTGCAGTTTGTATATGGTTCATATGTATTAGCTATATGCTGTTTCGGTTTAGAGTTGCAGTCAATCTGGAATCTGTCTGAGCATTGCCGCATCTTCTTGAAATGGAAATTGAAACCTGCAAAACCGTGCATGTTTTCCGTTGTACTGTTCTTTGCCAAAGCTGTCCGTGGTCTGCATTTTCTGAACATGTTTTTGTAGGAAAACATGCAAAACTTCGTTTTGGAGAAGTTAATGCTATCATGATAGAGAGCGAGAGAAAAAAGGTAACGGATTGAATTTCTTA

mRNA sequence

ATGCAAAAAGGGGGCAACCTCAAAGAACAAATTTACATGGAAATACCAATAGAGAAGAGAGGAAGGATGTCGAGTAGGAACACCCATTGGTGTTACAGATGTGAGCAGCCAGTTCAACTCCGTGGGCGGGACATGGTTTGCGCTAGCTGTAATGGAGGATTTGTTCAAGAACTCGATGAAATGATGGAAAGAGGTCCCCTTGATTTCTTTGGAGCCAATGGTCATGAATACCACAATCGGAGGCTTGGACTCCTGGAGCTTTTCTCAAACTTTATGAGGCAACGGTTGATAGACAGAAATGATATGAGGGGAAGGTTGGAATCTATTCCAGATCATGGTTCAGGATTTGGTCCTTGGTTGATCTTTGGTGGCCAAATTCCTGTTAGGTTGTCTGGACATGGTGGGTTTGAAGCCTTTTTTAATGGGGTTCCTGGAATTGGTGTGAGTAGGAGCAATGGTGGTGATTATTTTATTGGTCCTGGACTTGAAGAATTGTTTGAACAGCTTTCAGCAAACGACCGACGCGGACCACCCCCAGCATCTAGATCTTCAATCGATGCAATGCCTGTTGTTAAAATTACGCAAAGACACATCCGTTCGAATTCACACTGCCCTGTTTGCCAAGATAAATTTGAATTAGGGTCTGAAGCTAGGAAAATGCCATGTGACCATATGTATCATTCGGATTGTATAGTTCCCTGGCTTGTCCAGCACAACTCCTGCCCTGTTTGCCGCCAAGAGCTGCCTGCACAAGGGTCAGGTGGCAGCCACAGCTCATCTGGAAGCAACAATCTTAATCGAAACAGCCGAGAGAGGGAGAATAGTAGGACAAATCAAGGAAGGAGGAACCCATTTTCAAGTTTATGGCCATTCCGAGCGTCGAGTTCTGACTCAAACCATAGTGCGACCACTGGAAGCAGCTCGCCAGCCGTACATGAGAGCACCCAACACCAAACAGGGTATTCTGGATGGCCTTTCGACTAGCGTGAACGGTGGTGTTTTCATGAACTTGTTTGCACCAGTTTGTGATCTTGTTGTTTAAAATGAAGAAAGATAGTTCAACCCCCTGCTGTCCACTCCTTTGTATAATGATTAATAATGGACTTTGTGTGTGATGTAGATGACATTTTTCTCTGCCTTATCGATGCTGCTGCAGTTTGTATATGGTTCATATGTATTAGCTATATGCTGTTTCGGTTTAGAGTTGCAGTCAATCTGGAATCTGTCTGAGCATTGCCGCATCTTCTTGAAATGGAAATTGAAACCTGCAAAACCGTGCATGTTTTCCGTTGTACTGTTCTTTGCCAAAGCTGTCCGTGGTCTGCATTTTCTGAACATGTTTTTGTAGGAAAACATGCAAAACTTCGTTTTGGAGAAGTTAATGCTATCATGATAGAGAGCGAGAGAAAAAAGGTAACGGATTGAATTTCTTA

Coding sequence (CDS)

ATGCAAAAAGGGGGCAACCTCAAAGAACAAATTTACATGGAAATACCAATAGAGAAGAGAGGAAGGATGTCGAGTAGGAACACCCATTGGTGTTACAGATGTGAGCAGCCAGTTCAACTCCGTGGGCGGGACATGGTTTGCGCTAGCTGTAATGGAGGATTTGTTCAAGAACTCGATGAAATGATGGAAAGAGGTCCCCTTGATTTCTTTGGAGCCAATGGTCATGAATACCACAATCGGAGGCTTGGACTCCTGGAGCTTTTCTCAAACTTTATGAGGCAACGGTTGATAGACAGAAATGATATGAGGGGAAGGTTGGAATCTATTCCAGATCATGGTTCAGGATTTGGTCCTTGGTTGATCTTTGGTGGCCAAATTCCTGTTAGGTTGTCTGGACATGGTGGGTTTGAAGCCTTTTTTAATGGGGTTCCTGGAATTGGTGTGAGTAGGAGCAATGGTGGTGATTATTTTATTGGTCCTGGACTTGAAGAATTGTTTGAACAGCTTTCAGCAAACGACCGACGCGGACCACCCCCAGCATCTAGATCTTCAATCGATGCAATGCCTGTTGTTAAAATTACGCAAAGACACATCCGTTCGAATTCACACTGCCCTGTTTGCCAAGATAAATTTGAATTAGGGTCTGAAGCTAGGAAAATGCCATGTGACCATATGTATCATTCGGATTGTATAGTTCCCTGGCTTGTCCAGCACAACTCCTGCCCTGTTTGCCGCCAAGAGCTGCCTGCACAAGGGTCAGGTGGCAGCCACAGCTCATCTGGAAGCAACAATCTTAATCGAAACAGCCGAGAGAGGGAGAATAGTAGGACAAATCAAGGAAGGAGGAACCCATTTTCAAGTTTATGGCCATTCCGAGCGTCGAGTTCTGACTCAAACCATAGTGCGACCACTGGAAGCAGCTCGCCAGCCGTACATGAGAGCACCCAACACCAAACAGGGTATTCTGGATGGCCTTTCGACTAG

Protein sequence

MQKGGNLKEQIYMEIPIEKRGRMSSRNTHWCYRCEQPVQLRGRDMVCASCNGGFVQELDEMMERGPLDFFGANGHEYHNRRLGLLELFSNFMRQRLIDRNDMRGRLESIPDHGSGFGPWLIFGGQIPVRLSGHGGFEAFFNGVPGIGVSRSNGGDYFIGPGLEELFEQLSANDRRGPPPASRSSIDAMPVVKITQRHIRSNSHCPVCQDKFELGSEARKMPCDHMYHSDCIVPWLVQHNSCPVCRQELPAQGSGGSHSSSGSNNLNRNSRERENSRTNQGRRNPFSSLWPFRASSSDSNHSATTGSSSPAVHESTQHQTGYSGWPFD
Homology
[Close]
BLAST of Cp4.1LG08g06780 vs. Swiss-Prot
Match: RHC1A_ARATH (Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana GN=RHC1A PE=2 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 3.4e-87
Identity = 180/327 (55.05%), Postives = 226/327 (69.11%), Query Frame = 1 

Query: 24  SSRNTHWCYRCEQPVQLRGRDMVCASCNGGFVQELDEMMERGPLDFFGAN-GHEYHNRRL 83
           SSRNTHWC+RC++ V+L G++ VC  C GGFV+ELD M +  P D F ++ G    ++  
Sbjct: 3   SSRNTHWCHRCQRAVRLHGQEPVCFYCGGGFVEELD-MAQASPFDMFRSHRGVVERDQTF 62

Query: 84  GLLELFSNFMRQRLIDRN---DMRGR-LESIPDHGSGFGPWLIFGGQIPVRLSGHGGFEA 143
            L++ FS FMR RL +R+   ++RGR + S P++  G  P LIFGGQ+P RL+G    EA
Sbjct: 63  DLMDAFSVFMRNRLAERSHDREIRGRTISSGPENFPGLAPLLIFGGQVPYRLTGDNAVEA 122

Query: 144 FFNG-VPGIGVSRSNGGDYFIGPGLEELFEQLSAND-RRGPPPASRSSIDAMPVVKITQR 203
            FNG  PGIG++R N GDYF GPGLEELFEQLSA   RRGPPPA RS+IDA+P +KI QR
Sbjct: 123 LFNGGSPGIGITRGNTGDYFFGPGLEELFEQLSAGTTRRGPPPAPRSAIDALPTIKIAQR 182

Query: 204 HIRSN-SHCPVCQDKFELGSEARKMPCDHMYHSDCIVPWLVQHNSCPVCRQELPAQGSGG 263
           H+RS+ S+CPVC+D+FELGSEA++MPC+H+YHSDCIVPWLVQHNSCPVCRQELP+  SG 
Sbjct: 183 HLRSSDSNCPVCKDEFELGSEAKQMPCNHIYHSDCIVPWLVQHNSCPVCRQELPS-ASGP 242

Query: 264 SHSSSGS----NNLNRNSRERENSRTN-QGRRNPFSSLWPFRASSSDSNHSATTG----- 323
           S S + +    N  + +S    NSR N   RRNPFSS WPFR+S S S+ +   G     
Sbjct: 243 SSSQNRTTPTRNYRSSSSSSSSNSRENGNERRNPFSSFWPFRSSGSSSSSTQNRGGTRNS 302

Query: 324 --SSSPAVHESTQHQ---TGYSGWPFD 328
             S     +   QHQ    GYSGWPFD
Sbjct: 303 DTSDENHNYHQQQHQQSYMGYSGWPFD 327

[Close]
BLAST of Cp4.1LG08g06780 vs. Swiss-Prot
Match: RING1_GOSHI (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=1 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 1.0e-35
Identity = 100/296 (33.78%), Postives = 144/296 (48.65%), Query Frame = 1 

Query: 30  WCYRCEQPVQLR----GRDMVCASCNGGFVQELDEMMERGPLDFFGANGHE--YHNRRLG 89
           +CY+C + V +       D  C  CN GF++E D         F   N +   +H+  L 
Sbjct: 24  FCYQCNRTVNVTISPPSSDPTCPICNEGFLEEYDNPNPNQGSGFLNPNPNSIPFHDLFLT 83

Query: 90  LLELFSNFM-------------RQRLIDRND--MRGRLESIPDHGSGFGPWLIFGGQIPV 149
           L + F++ +                 ID N+  + G   S       F P+      +  
Sbjct: 84  LSDPFASLLPLLFPSSSSTTTSSSASIDPNNPSLSGPTRSGRGDPFAFDPFTFIQNHLND 143

Query: 150 RLSGHGGFEAFFNGVPGIGVSR--SNGGDYFIGPGLEELFEQLSAND--RRGPPPASRSS 209
             S     E      P     R  +N GDYFIGPGLE+L +QL+ ND  R G PPAS+S+
Sbjct: 144 LRSSGAQIEFVIQNNPSDQGFRLPANIGDYFIGPGLEQLIQQLAENDPNRYGTPPASKSA 203

Query: 210 IDAMPVVKITQRHIRSN-SHCPVCQDKFELGSEARKMPCDHMYHSDCIVPWLVQHNSCPV 269
           I+A+P+V IT+ ++ S  + C VC D FE G+EA++MPC H+YH DC++PWL  HNSCPV
Sbjct: 204 IEALPLVNITKSNLNSEFNQCAVCMDDFEEGTEAKQMPCKHLYHKDCLLPWLELHNSCPV 263

Query: 270 CRQELPAQGSG------GSHSSSGSNNLNRNSRERENSRTNQGRRNPFSSLWPFRA 294
           CR ELP           G+  +SG N+ + + +  +       R    S  WPF+A
Sbjct: 264 CRHELPTDDPDYERRVRGAQGTSGGNDGDNSGQRSDGDNRTVERSFRISLPWPFQA 319

[Close]
BLAST of Cp4.1LG08g06780 vs. Swiss-Prot
Match: RNG1L_ARATH (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 2.1e-33
Identity = 98/310 (31.61%), Postives = 143/310 (46.13%), Query Frame = 1 

Query: 30  WCYRCEQPVQLR---GRDMVCASCNGGFVQELDEMMERGPLDF----------------- 89
           +CY+C Q V +      D  C  CN GF++E ++      L+F                 
Sbjct: 22  FCYQCNQTVTISISSSADPFCPICNQGFLEEYEDPNPNQSLNFNPNSSDSFFPMADPFST 81

Query: 90  -----FGANGHEYHNRRLGLLELFSNFMRQRLIDRNDMRGRLESIPDHGSGFGPWLIFGG 149
                FG++        +  + LF   M+ +         R          F P+     
Sbjct: 82  LLPLIFGSSAAAPSG--MDFMSLFGPSMQPQ--------ARSTQQNPQSDAFDPFTFLQN 141

Query: 150 QIPVRLSGHGGFEAFFNGVPGIGVSRSNG--GDYFIGPGLEELFEQLSAND--RRGPPPA 209
            +    S    FE      P    +R  G  GDYF GPGLE+L +QL+ ND  R G PPA
Sbjct: 142 HLQTLRSSGTHFEFVIENHPSDPGNRMPGNFGDYFFGPGLEQLIQQLAENDPNRYGTPPA 201

Query: 210 SRSSIDAMPVVKITQRHIRSN-SHCPVCQDKFELGSEARKMPCDHMYHSDCIVPWLVQHN 269
           S+S+IDA+P VK+T+  ++S  + C VC D+FE GS+ ++MPC H++H DC++PWL  HN
Sbjct: 202 SKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELHN 261

Query: 270 SCPVCRQELPAQGSGGSHSSSGSNNLNRNSRERENSRTNQGRRNPFSSL---WPFRASSS 307
           SCPVCR ELP       + S GS          +   + +G++ P  S+   WPFR    
Sbjct: 262 SCPVCRFELPTDDPDYENRSQGSQG------SGDGQGSVEGQQTPRFSIQLPWPFRRQDG 315

[Close]
BLAST of Cp4.1LG08g06780 vs. Swiss-Prot
Match: RDUF2_ARATH (E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana GN=DURF2 PE=1 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.2e-28
Identity = 84/260 (32.31%), Postives = 130/260 (50.00%), Query Frame = 1 

Query: 28  THWCYRCEQPVQL---RGRDMV----CASCNGGFVQELDEMMERGPLDFFGANGHEYHNR 87
           ++WCY C + V +   +G   V    C  C+GGF++++++           A+       
Sbjct: 17  SYWCYSCTRFVSVWADQGTTTVGSVACPHCDGGFIEQINDSSSAATELTIPAS------- 76

Query: 88  RLGLLELFSNFMRQRLIDRNDMRGRLESIPDHGSGFGPWLIFGGQIPVRLSGHGG----- 147
                E+ S    +R + R    GR  S       F P ++  G    R  G  G     
Sbjct: 77  ----TEVRSINNNRRSVIRRRRSGRRPS-------FNPVIVLQGGAGEREEGEEGDAARD 136

Query: 148 ---FEAFFNGVPGIGVSR--SNGGDYFIGPGLEELFEQLSAND-------RRGPPPASRS 207
              FE +++   G G+     +  +  +G G E L EQLS  +       R G PPAS+S
Sbjct: 137 RRAFEFYYDDGSGSGLRPLPDSVSEILMGSGFERLLEQLSQIEASATGIGRSGNPPASKS 196

Query: 208 SIDAMPVVKITQRHIRSNSHCPVCQDKFELGSEARKMPCDHMYHSDCIVPWLVQHNSCPV 264
           +I+++P V+I+  HI S ++C VC + FE  +EAR+MPC H++H DCIVPWL   NSCPV
Sbjct: 197 AIESLPRVEISDCHIGSEANCAVCTEIFETETEAREMPCKHLFHDDCIVPWLSIRNSCPV 256

[Close]
BLAST of Cp4.1LG08g06780 vs. Swiss-Prot
Match: RDUF1_ARATH (E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis thaliana GN=RDUF1 PE=1 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.7e-28
Identity = 78/243 (32.10%), Postives = 125/243 (51.44%), Query Frame = 1 

Query: 28  THWCYRCEQPVQL-----RGRDMVCASCNGGFVQELDEMMERGPLDFFGANGHEYHNRRL 87
           ++WCY C + + +         ++C  CNGGF++E+++      +    A+  E  +   
Sbjct: 30  SYWCYSCTRFISVWEDQDANAGVLCPYCNGGFIEEIEDS-SNSTVAAIPASTPEVRS--- 89

Query: 88  GLLELFSNFMRQRLIDRNDMRGRLESIPDHGSGFGPWLIFGGQIPVRLSGHGG------F 147
            + E   + +R+R  +R      +  I  HG G G      G+      G G       +
Sbjct: 90  -VEETHRSIIRRRRSNRRTSFNPV--IVLHGGGGGG----AGERVENEEGDGATRERRAY 149

Query: 148 EAFFNGVPGIGVSR--SNGGDYFIGPGLEELFEQLSAND-------RRGPPPASRSSIDA 207
           E +++   G G+     +  +  +G G E L EQLS  +       R G PPAS+S+I++
Sbjct: 150 EFYYDDGSGSGLRPLPDSVSEILMGSGFERLLEQLSQIEASGNGIGRSGNPPASKSAIES 209

Query: 208 MPVVKITQRHIRSNSHCPVCQDKFELGSEARKMPCDHMYHSDCIVPWLVQHNSCPVCRQE 251
           +P V+I+  H ++ ++C VC + FE G E R+MPC H++H DCIVPWL   NSCPVCR E
Sbjct: 210 LPRVEISDCHTKAEANCAVCTEVFEAGIEGREMPCKHIFHGDCIVPWLSIRNSCPVCRFE 261

[Close]
BLAST of Cp4.1LG08g06780 vs. TrEMBL
Match: A0A0A0LCH6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G822250 PE=4 SV=1)

HSP 1 Score: 587.8 bits (1514), Expect = 8.1e-165
Identity = 276/305 (90.49%), Postives = 292/305 (95.74%), Query Frame = 1 

Query: 23  MSSRNTHWCYRCEQPVQLRGRDMVCASCNGGFVQELDEMMERGPLDFFGANGHEYHNRRL 82
           MS+ NTHWCYRCEQPV+LRGRDM C SCNGGFVQELDEMMER PLD FGA+G+EY NRRL
Sbjct: 1   MSTANTHWCYRCEQPVRLRGRDMTCLSCNGGFVQELDEMMERSPLDLFGASGNEYQNRRL 60

Query: 83  GLLELFSNFMRQRLIDRNDMRGRLESIPDHGSGFGPWLIFGGQIPVRLSGHGGFEAFFNG 142
           GLLELFSNFMRQRL+DRND+RGRL+SIPDHG GFGPWLIFGGQIPVRLSGHGGFEAFFNG
Sbjct: 61  GLLELFSNFMRQRLVDRNDIRGRLDSIPDHGPGFGPWLIFGGQIPVRLSGHGGFEAFFNG 120

Query: 143 VPGIGVSRSNGGDYFIGPGLEELFEQLSANDRRGPPPASRSSIDAMPVVKITQRHIRSNS 202
           VPGIGVSRSNGGDYFIGPGLEELFEQLSANDRRGPPPASRSSIDAMPVVKITQRHIRSNS
Sbjct: 121 VPGIGVSRSNGGDYFIGPGLEELFEQLSANDRRGPPPASRSSIDAMPVVKITQRHIRSNS 180

Query: 203 HCPVCQDKFELGSEARKMPCDHMYHSDCIVPWLVQHNSCPVCRQELPAQGSGGSHSSSGS 262
           HCPVCQDKFELGSEAR+MPCDHMYHSDCIVPWLVQHNSCPVCRQELPAQGSG SHSSSGS
Sbjct: 181 HCPVCQDKFELGSEARQMPCDHMYHSDCIVPWLVQHNSCPVCRQELPAQGSGSSHSSSGS 240

Query: 263 NNLNRNSRERENSRTNQGRRNPFSSLWPFRASSSDSNHSATTGSSSPAVHESTQHQTGYS 322
           NN +RNSR+REN RT QGRRNPF+SLWPFRASSS+SNHSATTGS+SPA+HE+ QH+TGY 
Sbjct: 241 NNSSRNSRDRENGRTTQGRRNPFTSLWPFRASSSNSNHSATTGSNSPALHETNQHETGYY 300

Query: 323 GWPFD 328
           GWPFD
Sbjct: 301 GWPFD 305

[Close]
BLAST of Cp4.1LG08g06780 vs. TrEMBL
Match: B9HDT7_POPTR (Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0006s03070g PE=4 SV=2)

HSP 1 Score: 442.2 bits (1136), Expect = 5.5e-121
Identity = 214/309 (69.26%), Postives = 247/309 (79.94%), Query Frame = 1 

Query: 24  SSRNTHWCYRCEQPVQLRGRDMVCASCNGGFVQELDEMMERGPLDFFGANGHEYHNRRLG 83
           SSRNTHWCY C +PV+LRGRD  C  C+GGFVQELD+M    PLDFFG +G + H+   G
Sbjct: 3   SSRNTHWCYSCRRPVRLRGRDAACPYCSGGFVQELDDMHRINPLDFFGMDGDDDHDNMFG 62

Query: 84  LLELFSNFMRQRLIDRN---DMRGRLESIPDHGSGFGPWLIFGGQIPVRLSGHGGFEAFF 143
           L+E FS FMRQR+ DR+   D+R R +SIP+H  GFGP LIFGGQIP RLSG+GG EA F
Sbjct: 63  LMEAFSAFMRQRMADRSHNHDIRSRSDSIPEHNPGFGPLLIFGGQIPFRLSGNGGLEALF 122

Query: 144 NGVPGIGVSRSNGGDYFIGPGLEELFEQLSANDRRGPPPASRSSIDAMPVVKITQRHIRS 203
           +G PG+  +R N GDYF+GPGLEELFEQLSANDRRGP PA+RSSIDAMP VKITQRH+R+
Sbjct: 123 SGSPGVAFARGNAGDYFVGPGLEELFEQLSANDRRGPAPATRSSIDAMPTVKITQRHLRT 182

Query: 204 NSHCPVCQDKFELGSEARKMPCDHMYHSDCIVPWLVQHNSCPVCRQELPAQGSGGSHS-- 263
           +SHCPVC+DKFELGSEAR+MPC+H+YHSDCIVPWLVQHNSCPVCRQELP QGS   HS  
Sbjct: 183 DSHCPVCKDKFELGSEARQMPCNHLYHSDCIVPWLVQHNSCPVCRQELPPQGSNSGHSYQ 242

Query: 264 SSGSNNLNRNSRERENSRTNQGRRNPFSSLWPFRASSSDSNHSATTGSSSPAVHESTQHQ 323
           SS S + N N   RENSR  +GRRNP S LWPFR+S+S SNH  T GSSSP +HE+  HQ
Sbjct: 243 SSSSRSRNSNYSGRENSR--EGRRNPLSYLWPFRSSNSSSNHDETPGSSSPTMHEN-NHQ 302

Query: 324 TGYSGWPFD 328
            GYSGWPF+
Sbjct: 303 MGYSGWPFN 308

[Close]
BLAST of Cp4.1LG08g06780 vs. TrEMBL
Match: V4SSL7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012279mg PE=4 SV=1)

HSP 1 Score: 441.4 bits (1134), Expect = 9.4e-121
Identity = 211/308 (68.51%), Postives = 247/308 (80.19%), Query Frame = 1 

Query: 24  SSRNTHWCYRCEQPVQLRGRDMVCASCNGGFVQELDEMMERGPLDFFGANGHEYHNRRLG 83
           S RNTHWCYRC +PV+L+G D VC  C+GGFVQELD+M+   PLDFFG +  E  ++RLG
Sbjct: 3   SGRNTHWCYRCRRPVRLQGEDAVCLYCSGGFVQELDDMVSVSPLDFFGLDNDEERDQRLG 62

Query: 84  LLELFSNFMRQRLIDRN--DMRGRLESIPDHGSGFGPWLIFGGQIPVRLSGHGGFEAFFN 143
           L+E FS FMR R+ DR+  D+RGR +S P+HG GFGP LIFGGQIP+RLSG+ GFEA F 
Sbjct: 63  LMEAFSAFMRHRMADRHSHDIRGRYDSTPEHGQGFGPLLIFGGQIPLRLSGNSGFEAIFG 122

Query: 144 GVPGIGVSRSNGGDYFIGPGLEELFEQLSANDRRGPPPASRSSIDAMPVVKITQRHIRSN 203
           G PG+G +R N GDYFIGPGLEELFEQLSAN RRGPPPA+RS+IDAMP V+ITQRH+RS+
Sbjct: 123 GAPGLGFARGNTGDYFIGPGLEELFEQLSANGRRGPPPAARSAIDAMPTVRITQRHLRSD 182

Query: 204 SHCPVCQDKFELGSEARKMPCDHMYHSDCIVPWLVQHNSCPVCRQELPAQGSGGS--HSS 263
           SHCPVCQDKFELGSEAR+MPC+H+YHSDCIVPWLVQHNSCPVCRQELP QGS  S  H S
Sbjct: 183 SHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELPLQGSSSSRIHQS 242

Query: 264 SGSNNLNRNSRERENSRTNQGRRNPFSSLWPFRASSSDSNHSATTGSSSPAVHESTQHQT 323
           S   + + +     + R NQGRRN FS  WPFR+S+S SNH+ TT SSSPA+HE+  H  
Sbjct: 243 SSGQSRSTSFGSNGSGRENQGRRNLFSGFWPFRSSNSSSNHNGTTESSSPAMHENNPHM- 302

Query: 324 GYSGWPFD 328
           GYSGWPFD
Sbjct: 303 GYSGWPFD 309

[Close]
BLAST of Cp4.1LG08g06780 vs. TrEMBL
Match: A0A067EQC1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g021656mg PE=4 SV=1)

HSP 1 Score: 439.9 bits (1130), Expect = 2.7e-120
Identity = 210/308 (68.18%), Postives = 247/308 (80.19%), Query Frame = 1 

Query: 24  SSRNTHWCYRCEQPVQLRGRDMVCASCNGGFVQELDEMMERGPLDFFGANGHEYHNRRLG 83
           S RNTHWCYRC +PV+L+G D VC  C+GGFVQELD+M+   PLDFFG +  E  ++RLG
Sbjct: 3   SGRNTHWCYRCRRPVRLQGEDAVCLYCSGGFVQELDDMVSVSPLDFFGLDNDEERDQRLG 62

Query: 84  LLELFSNFMRQRLIDRN--DMRGRLESIPDHGSGFGPWLIFGGQIPVRLSGHGGFEAFFN 143
           L+E FS F+R R+ DR+  D+RGR +S P+HG GFGP LIFGGQIP+RLSG+ GFEA F 
Sbjct: 63  LMEAFSAFVRHRMADRHSHDIRGRYDSTPEHGQGFGPLLIFGGQIPLRLSGNSGFEAIFG 122

Query: 144 GVPGIGVSRSNGGDYFIGPGLEELFEQLSANDRRGPPPASRSSIDAMPVVKITQRHIRSN 203
           G PG+G +R N GDYFIGPGLEELFEQLSAN RRGPPPA+RS+IDAMP V+ITQRH+RS+
Sbjct: 123 GAPGLGFARGNTGDYFIGPGLEELFEQLSANGRRGPPPAARSAIDAMPTVRITQRHLRSD 182

Query: 204 SHCPVCQDKFELGSEARKMPCDHMYHSDCIVPWLVQHNSCPVCRQELPAQGSGGS--HSS 263
           SHCPVCQDKFELGSEAR+MPC+H+YHSDCIVPWLVQHNSCPVCRQELP QGS  S  H S
Sbjct: 183 SHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELPLQGSSSSRIHQS 242

Query: 264 SGSNNLNRNSRERENSRTNQGRRNPFSSLWPFRASSSDSNHSATTGSSSPAVHESTQHQT 323
           S   + + +     + R NQGRRN FS  WPFR+S+S SNH+ TT SSSPA+HE+  H  
Sbjct: 243 SSGQSRSTSFGSNGSGRENQGRRNLFSGFWPFRSSNSSSNHNGTTESSSPAMHENNPHM- 302

Query: 324 GYSGWPFD 328
           GYSGWPFD
Sbjct: 303 GYSGWPFD 309

[Close]
BLAST of Cp4.1LG08g06780 vs. TrEMBL
Match: B9IHK2_POPTR (Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0016s02910g PE=4 SV=1)

HSP 1 Score: 438.0 bits (1125), Expect = 1.0e-119
Identity = 211/309 (68.28%), Postives = 247/309 (79.94%), Query Frame = 1 

Query: 24  SSRNTHWCYRCEQPVQLRGRDMVCASCNGGFVQELDEMMERGPLDFFGANGHEYHNRRLG 83
           SSRNTHWCY C +PV+LRGRD  C  C+GGFVQELD+M    PLDFFG +  +  ++R G
Sbjct: 3   SSRNTHWCYSCRRPVRLRGRDSACPYCSGGFVQELDDMHRISPLDFFGMDSDDDRDQRFG 62

Query: 84  LLELFSNFMRQRLIDRN---DMRGRLESIPDHGSGFGPWLIFGGQIPVRLSGHGGFEAFF 143
           L+E FS+FMRQR+ DR+   D+R R +S+P H  GFGP LIFGGQ+P RLSG+GGFEA F
Sbjct: 63  LMEAFSDFMRQRMADRSHNHDIRSRSDSVPGHNPGFGPLLIFGGQVPFRLSGNGGFEALF 122

Query: 144 NGVPGIGVSRSNGGDYFIGPGLEELFEQLSANDRRGPPPASRSSIDAMPVVKITQRHIRS 203
           +G PG+  +R N GDYFIGPGLEELFEQLSAND+RGPPPA+RSSIDAMP +KITQ+H+RS
Sbjct: 123 SGAPGVAFARGNAGDYFIGPGLEELFEQLSANDQRGPPPATRSSIDAMPTIKITQKHLRS 182

Query: 204 NSHCPVCQDKFELGSEARKMPCDHMYHSDCIVPWLVQHNSCPVCRQELPAQGSGGSHS-- 263
           +SHCPVC+DKFELGSEAR+MPCDH+YHSDCIVPWLVQHNSCPVCRQELP QGS   HS  
Sbjct: 183 DSHCPVCKDKFELGSEARQMPCDHLYHSDCIVPWLVQHNSCPVCRQELPPQGSSSRHSYQ 242

Query: 264 SSGSNNLNRNSRERENSRTNQGRRNPFSSLWPFRASSSDSNHSATTGSSSPAVHESTQHQ 323
           SS S + + N   RENSR   GRRNP S LWPFR+S+S SNH  T  SSSPA+HE+  H 
Sbjct: 243 SSSSRSRSSNYSGRENSR--GGRRNPLSYLWPFRSSNSSSNHDETPESSSPAMHENNPHM 302

Query: 324 TGYSGWPFD 328
            GYSGWPF+
Sbjct: 303 -GYSGWPFN 308

[Close]
BLAST of Cp4.1LG08g06780 vs. TAIR10
Match: AT2G40830.2 (AT2G40830.2 RING-H2 finger C1A)

HSP 1 Score: 323.2 bits (827), Expect = 1.9e-88
Identity = 180/327 (55.05%), Postives = 226/327 (69.11%), Query Frame = 1 

Query: 24  SSRNTHWCYRCEQPVQLRGRDMVCASCNGGFVQELDEMMERGPLDFFGAN-GHEYHNRRL 83
           SSRNTHWC+RC++ V+L G++ VC  C GGFV+ELD M +  P D F ++ G    ++  
Sbjct: 3   SSRNTHWCHRCQRAVRLHGQEPVCFYCGGGFVEELD-MAQASPFDMFRSHRGVVERDQTF 62

Query: 84  GLLELFSNFMRQRLIDRN---DMRGR-LESIPDHGSGFGPWLIFGGQIPVRLSGHGGFEA 143
            L++ FS FMR RL +R+   ++RGR + S P++  G  P LIFGGQ+P RL+G    EA
Sbjct: 63  DLMDAFSVFMRNRLAERSHDREIRGRTISSGPENFPGLAPLLIFGGQVPYRLTGDNAVEA 122

Query: 144 FFNG-VPGIGVSRSNGGDYFIGPGLEELFEQLSAND-RRGPPPASRSSIDAMPVVKITQR 203
            FNG  PGIG++R N GDYF GPGLEELFEQLSA   RRGPPPA RS+IDA+P +KI QR
Sbjct: 123 LFNGGSPGIGITRGNTGDYFFGPGLEELFEQLSAGTTRRGPPPAPRSAIDALPTIKIAQR 182

Query: 204 HIRSN-SHCPVCQDKFELGSEARKMPCDHMYHSDCIVPWLVQHNSCPVCRQELPAQGSGG 263
           H+RS+ S+CPVC+D+FELGSEA++MPC+H+YHSDCIVPWLVQHNSCPVCRQELP+  SG 
Sbjct: 183 HLRSSDSNCPVCKDEFELGSEAKQMPCNHIYHSDCIVPWLVQHNSCPVCRQELPS-ASGP 242

Query: 264 SHSSSGS----NNLNRNSRERENSRTN-QGRRNPFSSLWPFRASSSDSNHSATTG----- 323
           S S + +    N  + +S    NSR N   RRNPFSS WPFR+S S S+ +   G     
Sbjct: 243 SSSQNRTTPTRNYRSSSSSSSSNSRENGNERRNPFSSFWPFRSSGSSSSSTQNRGGTRNS 302

Query: 324 --SSSPAVHESTQHQ---TGYSGWPFD 328
             S     +   QHQ    GYSGWPFD
Sbjct: 303 DTSDENHNYHQQQHQQSYMGYSGWPFD 327

[Close]
BLAST of Cp4.1LG08g06780 vs. TAIR10
Match: AT3G56580.2 (AT3G56580.2 RING/U-box superfamily protein)

HSP 1 Score: 303.5 bits (776), Expect = 1.6e-82
Identity = 175/332 (52.71%), Postives = 218/332 (65.66%), Query Frame = 1 

Query: 24  SSRNTHWCYRCEQPVQLRGRDMVCASCNGGFVQELDEMMERGPLDFFGANGHEYHNRRLG 83
           S RNTHWC+RC++ V LR RD VC+ C GGFV+E+D    R   D          +    
Sbjct: 3   SIRNTHWCHRCQRAVWLRARDAVCSYCGGGFVEEIDIGPSRAHRDV-------ERDPTFD 62

Query: 84  LLELFSNFMRQRLIDRN---DMRGRLESIPDHG-SGFGPWLIFGGQIPVRLSG--HGGFE 143
           L+E FS FMR RL +R+   ++ GRL S      S   P LIFGGQ P RL+G  +   E
Sbjct: 63  LMEAFSAFMRSRLAERSYDREISGRLGSAGSESFSNLAPLLIFGGQAPFRLAGGDNSSVE 122

Query: 144 AFFNGV-PGIGVSR-SNGGDYFIGPGLEELFEQLSANDR-RGPPPASRSSIDAMPVVKIT 203
           AF NG  PGIG++R +N GDYF GPGLEEL EQLS+    RGPPPA +SSIDA+P +KIT
Sbjct: 123 AFVNGAAPGIGIARGTNAGDYFFGPGLEELIEQLSSGTHHRGPPPAPKSSIDALPTIKIT 182

Query: 204 QRHIRS-NSHCPVCQDKFELGSEARKMPCDHMYHSDCIVPWLVQHNSCPVCRQELPAQGS 263
           Q+H++S +SHCPVC+D+FEL SEA++MPC H+YHSDCIVPWLVQHNSCPVCR+ELP++GS
Sbjct: 183 QKHLKSSDSHCPVCKDEFELKSEAKQMPCHHIYHSDCIVPWLVQHNSCPVCRKELPSRGS 242

Query: 264 GGSHSSSGSNNLNRNSRERENSRTNQGRRNPFSSLWPFRASSS-------DSNHSATTGS 323
               SSS  ++ NR++  RENSR    RRN FS+LWPFR+SSS       D+N++AT   
Sbjct: 243 ----SSSTQSSQNRSTNGRENSR----RRNIFSNLWPFRSSSSSSTQNRRDTNNTATAEE 302

Query: 324 SSPAVHESTQHQ-----------TGYSGWPFD 328
                H+  Q Q            GYSGWPFD
Sbjct: 303 GHYHHHQQQQQQHQHQHQQQQSHMGYSGWPFD 319

[Close]
BLAST of Cp4.1LG08g06780 vs. TAIR10
Match: AT3G10815.1 (AT3G10815.1 RING/U-box superfamily protein)

HSP 1 Score: 145.6 bits (366), Expect = 5.4e-35
Identity = 76/159 (47.80%), Postives = 103/159 (64.78%), Query Frame = 1 

Query: 149 SRSNGGDYFIGPGL--EELFEQLSA-NDRRGPPPASRSSIDAMPVVKITQRHIRSNSHCP 208
           +R N     IG  L  EELF +L A  DRRGPPPAS ++I+++  +KI Q+H+  + +CP
Sbjct: 63  NRRNNRRSVIGEQLSFEELFNRLPALQDRRGPPPASLAAINSLQKIKIRQKHLGLDPYCP 122

Query: 209 VCQDKFELGSEARKMPCDHMYHSDCIVPWLVQHNSCPVCRQELPAQGSGGSHSSSGSNNL 268
           VCQD+FE+GS+ARKMPC H+YHS+CI+PWLVQ N+CPVCR+ELP                
Sbjct: 123 VCQDQFEIGSDARKMPCKHIYHSECILPWLVQRNTCPVCRKELP---------------- 182

Query: 269 NRNSRERENSRTNQGRRNPFSSLWPFRASSSDSNHSATT 305
               ++R NS     R+NP   LWPFR+S   SNH+ ++
Sbjct: 183 ----QDRNNS-----RKNPLWHLWPFRSSGLASNHNGSS 196

[Close]
BLAST of Cp4.1LG08g06780 vs. TAIR10
Match: AT3G19950.1 (AT3G19950.1 RING/U-box superfamily protein)

HSP 1 Score: 144.4 bits (363), Expect = 1.2e-34
Identity = 98/310 (31.61%), Postives = 143/310 (46.13%), Query Frame = 1 

Query: 30  WCYRCEQPVQLR---GRDMVCASCNGGFVQELDEMMERGPLDF----------------- 89
           +CY+C Q V +      D  C  CN GF++E ++      L+F                 
Sbjct: 22  FCYQCNQTVTISISSSADPFCPICNQGFLEEYEDPNPNQSLNFNPNSSDSFFPMADPFST 81

Query: 90  -----FGANGHEYHNRRLGLLELFSNFMRQRLIDRNDMRGRLESIPDHGSGFGPWLIFGG 149
                FG++        +  + LF   M+ +         R          F P+     
Sbjct: 82  LLPLIFGSSAAAPSG--MDFMSLFGPSMQPQ--------ARSTQQNPQSDAFDPFTFLQN 141

Query: 150 QIPVRLSGHGGFEAFFNGVPGIGVSRSNG--GDYFIGPGLEELFEQLSAND--RRGPPPA 209
            +    S    FE      P    +R  G  GDYF GPGLE+L +QL+ ND  R G PPA
Sbjct: 142 HLQTLRSSGTHFEFVIENHPSDPGNRMPGNFGDYFFGPGLEQLIQQLAENDPNRYGTPPA 201

Query: 210 SRSSIDAMPVVKITQRHIRSN-SHCPVCQDKFELGSEARKMPCDHMYHSDCIVPWLVQHN 269
           S+S+IDA+P VK+T+  ++S  + C VC D+FE GS+ ++MPC H++H DC++PWL  HN
Sbjct: 202 SKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELHN 261

Query: 270 SCPVCRQELPAQGSGGSHSSSGSNNLNRNSRERENSRTNQGRRNPFSSL---WPFRASSS 307
           SCPVCR ELP       + S GS          +   + +G++ P  S+   WPFR    
Sbjct: 262 SCPVCRFELPTDDPDYENRSQGSQG------SGDGQGSVEGQQTPRFSIQLPWPFRRQDG 315

[Close]
BLAST of Cp4.1LG08g06780 vs. TAIR10
Match: AT5G59550.1 (AT5G59550.1 zinc finger (C3HC4-type RING finger) family protein)

HSP 1 Score: 128.6 bits (322), Expect = 6.8e-30
Identity = 84/260 (32.31%), Postives = 130/260 (50.00%), Query Frame = 1 

Query: 28  THWCYRCEQPVQL---RGRDMV----CASCNGGFVQELDEMMERGPLDFFGANGHEYHNR 87
           ++WCY C + V +   +G   V    C  C+GGF++++++           A+       
Sbjct: 17  SYWCYSCTRFVSVWADQGTTTVGSVACPHCDGGFIEQINDSSSAATELTIPAS------- 76

Query: 88  RLGLLELFSNFMRQRLIDRNDMRGRLESIPDHGSGFGPWLIFGGQIPVRLSGHGG----- 147
                E+ S    +R + R    GR  S       F P ++  G    R  G  G     
Sbjct: 77  ----TEVRSINNNRRSVIRRRRSGRRPS-------FNPVIVLQGGAGEREEGEEGDAARD 136

Query: 148 ---FEAFFNGVPGIGVSR--SNGGDYFIGPGLEELFEQLSAND-------RRGPPPASRS 207
              FE +++   G G+     +  +  +G G E L EQLS  +       R G PPAS+S
Sbjct: 137 RRAFEFYYDDGSGSGLRPLPDSVSEILMGSGFERLLEQLSQIEASATGIGRSGNPPASKS 196

Query: 208 SIDAMPVVKITQRHIRSNSHCPVCQDKFELGSEARKMPCDHMYHSDCIVPWLVQHNSCPV 264
           +I+++P V+I+  HI S ++C VC + FE  +EAR+MPC H++H DCIVPWL   NSCPV
Sbjct: 197 AIESLPRVEISDCHIGSEANCAVCTEIFETETEAREMPCKHLFHDDCIVPWLSIRNSCPV 256

[Close]
BLAST of Cp4.1LG08g06780 vs. NCBI nr
Match: gi|449437755|ref|XP_004136656.1| (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis sativus])

HSP 1 Score: 587.8 bits (1514), Expect = 1.2e-164
Identity = 276/305 (90.49%), Postives = 292/305 (95.74%), Query Frame = 1 

Query: 23  MSSRNTHWCYRCEQPVQLRGRDMVCASCNGGFVQELDEMMERGPLDFFGANGHEYHNRRL 82
           MS+ NTHWCYRCEQPV+LRGRDM C SCNGGFVQELDEMMER PLD FGA+G+EY NRRL
Sbjct: 1   MSTANTHWCYRCEQPVRLRGRDMTCLSCNGGFVQELDEMMERSPLDLFGASGNEYQNRRL 60

Query: 83  GLLELFSNFMRQRLIDRNDMRGRLESIPDHGSGFGPWLIFGGQIPVRLSGHGGFEAFFNG 142
           GLLELFSNFMRQRL+DRND+RGRL+SIPDHG GFGPWLIFGGQIPVRLSGHGGFEAFFNG
Sbjct: 61  GLLELFSNFMRQRLVDRNDIRGRLDSIPDHGPGFGPWLIFGGQIPVRLSGHGGFEAFFNG 120

Query: 143 VPGIGVSRSNGGDYFIGPGLEELFEQLSANDRRGPPPASRSSIDAMPVVKITQRHIRSNS 202
           VPGIGVSRSNGGDYFIGPGLEELFEQLSANDRRGPPPASRSSIDAMPVVKITQRHIRSNS
Sbjct: 121 VPGIGVSRSNGGDYFIGPGLEELFEQLSANDRRGPPPASRSSIDAMPVVKITQRHIRSNS 180

Query: 203 HCPVCQDKFELGSEARKMPCDHMYHSDCIVPWLVQHNSCPVCRQELPAQGSGGSHSSSGS 262
           HCPVCQDKFELGSEAR+MPCDHMYHSDCIVPWLVQHNSCPVCRQELPAQGSG SHSSSGS
Sbjct: 181 HCPVCQDKFELGSEARQMPCDHMYHSDCIVPWLVQHNSCPVCRQELPAQGSGSSHSSSGS 240

Query: 263 NNLNRNSRERENSRTNQGRRNPFSSLWPFRASSSDSNHSATTGSSSPAVHESTQHQTGYS 322
           NN +RNSR+REN RT QGRRNPF+SLWPFRASSS+SNHSATTGS+SPA+HE+ QH+TGY 
Sbjct: 241 NNSSRNSRDRENGRTTQGRRNPFTSLWPFRASSSNSNHSATTGSNSPALHETNQHETGYY 300

Query: 323 GWPFD 328
           GWPFD
Sbjct: 301 GWPFD 305

[Close]
BLAST of Cp4.1LG08g06780 vs. NCBI nr
Match: gi|659085191|ref|XP_008443292.1| (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis melo])

HSP 1 Score: 584.3 bits (1505), Expect = 1.3e-163
Identity = 274/305 (89.84%), Postives = 291/305 (95.41%), Query Frame = 1 

Query: 23  MSSRNTHWCYRCEQPVQLRGRDMVCASCNGGFVQELDEMMERGPLDFFGANGHEYHNRRL 82
           MS+ NTHWCYRCEQPV+LRGRDM C SCNGGFVQELDEMMER PLD FGA+G+EY NRRL
Sbjct: 1   MSTGNTHWCYRCEQPVRLRGRDMTCLSCNGGFVQELDEMMERSPLDLFGASGNEYQNRRL 60

Query: 83  GLLELFSNFMRQRLIDRNDMRGRLESIPDHGSGFGPWLIFGGQIPVRLSGHGGFEAFFNG 142
           GLLELFSNFMRQR++DRND+RGRL+SIPDHG GFGPWLIFGGQIPVRLSGHGGFEAFFNG
Sbjct: 61  GLLELFSNFMRQRMVDRNDIRGRLDSIPDHGPGFGPWLIFGGQIPVRLSGHGGFEAFFNG 120

Query: 143 VPGIGVSRSNGGDYFIGPGLEELFEQLSANDRRGPPPASRSSIDAMPVVKITQRHIRSNS 202
           VPGIGVSRSNGGDYFIGPGLEELFEQLSANDRRGPPPASRSSIDAMPVVKITQRHIRSNS
Sbjct: 121 VPGIGVSRSNGGDYFIGPGLEELFEQLSANDRRGPPPASRSSIDAMPVVKITQRHIRSNS 180

Query: 203 HCPVCQDKFELGSEARKMPCDHMYHSDCIVPWLVQHNSCPVCRQELPAQGSGGSHSSSGS 262
           HCPVCQDKFELGSEAR+MPCDHMYHSDCIVPWLVQHNSCPVCRQELPAQGS  SHSSSGS
Sbjct: 181 HCPVCQDKFELGSEARQMPCDHMYHSDCIVPWLVQHNSCPVCRQELPAQGSSSSHSSSGS 240

Query: 263 NNLNRNSRERENSRTNQGRRNPFSSLWPFRASSSDSNHSATTGSSSPAVHESTQHQTGYS 322
           NN +RNSR+RENSRT QGRRNPF+SLWPFRASSS+SNH ATTGS+SPA+HE+ QH+TGY 
Sbjct: 241 NNSSRNSRDRENSRTTQGRRNPFTSLWPFRASSSNSNHGATTGSNSPALHETNQHETGYY 300

Query: 323 GWPFD 328
           GWPFD
Sbjct: 301 GWPFD 305

[Close]
BLAST of Cp4.1LG08g06780 vs. NCBI nr
Match: gi|568856863|ref|XP_006481992.1| (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Citrus sinensis])

HSP 1 Score: 443.7 bits (1140), Expect = 2.7e-121
Identity = 212/308 (68.83%), Postives = 247/308 (80.19%), Query Frame = 1 

Query: 24  SSRNTHWCYRCEQPVQLRGRDMVCASCNGGFVQELDEMMERGPLDFFGANGHEYHNRRLG 83
           S RNTHWCYRC +PV+L+G D VC  C+GGFVQELD+M+   PLDFFG +  E  ++RLG
Sbjct: 3   SGRNTHWCYRCRRPVRLQGEDAVCLYCSGGFVQELDDMVSVSPLDFFGLDNDEERDQRLG 62

Query: 84  LLELFSNFMRQRLIDRN--DMRGRLESIPDHGSGFGPWLIFGGQIPVRLSGHGGFEAFFN 143
           L+E FS FMR R+ DR+  D+RGR +S P+HG GFGP LIFGGQIP+RLSG+ GFEA F 
Sbjct: 63  LMEAFSAFMRHRMADRHSHDIRGRYDSTPEHGQGFGPLLIFGGQIPLRLSGNSGFEAIFG 122

Query: 144 GVPGIGVSRSNGGDYFIGPGLEELFEQLSANDRRGPPPASRSSIDAMPVVKITQRHIRSN 203
           G PG+G +R N GDYFIGPGLEELFEQLSAN+RRGPPPA+RS+IDAMP V+ITQRH+RS+
Sbjct: 123 GAPGLGFARGNTGDYFIGPGLEELFEQLSANNRRGPPPAARSAIDAMPTVRITQRHLRSD 182

Query: 204 SHCPVCQDKFELGSEARKMPCDHMYHSDCIVPWLVQHNSCPVCRQELPAQGSGGS--HSS 263
           SHCPVCQDKFELGSEAR+MPC+H+YHSDCIVPWLVQHNSCPVCRQELP QGS  S  H S
Sbjct: 183 SHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELPLQGSSSSRIHQS 242

Query: 264 SGSNNLNRNSRERENSRTNQGRRNPFSSLWPFRASSSDSNHSATTGSSSPAVHESTQHQT 323
           S   + +       N R NQGRRN FS  WPFR+S+S SNH+ TT SSSPA+HE+  H  
Sbjct: 243 SSGQSRSTTFGSNGNGRENQGRRNLFSGFWPFRSSNSSSNHNGTTESSSPAMHENNPHM- 302

Query: 324 GYSGWPFD 328
           GYSGWPFD
Sbjct: 303 GYSGWPFD 309

[Close]
BLAST of Cp4.1LG08g06780 vs. NCBI nr
Match: gi|566174207|ref|XP_002308856.2| (zinc finger family protein [Populus trichocarpa])

HSP 1 Score: 442.2 bits (1136), Expect = 7.9e-121
Identity = 214/309 (69.26%), Postives = 247/309 (79.94%), Query Frame = 1 

Query: 24  SSRNTHWCYRCEQPVQLRGRDMVCASCNGGFVQELDEMMERGPLDFFGANGHEYHNRRLG 83
           SSRNTHWCY C +PV+LRGRD  C  C+GGFVQELD+M    PLDFFG +G + H+   G
Sbjct: 3   SSRNTHWCYSCRRPVRLRGRDAACPYCSGGFVQELDDMHRINPLDFFGMDGDDDHDNMFG 62

Query: 84  LLELFSNFMRQRLIDRN---DMRGRLESIPDHGSGFGPWLIFGGQIPVRLSGHGGFEAFF 143
           L+E FS FMRQR+ DR+   D+R R +SIP+H  GFGP LIFGGQIP RLSG+GG EA F
Sbjct: 63  LMEAFSAFMRQRMADRSHNHDIRSRSDSIPEHNPGFGPLLIFGGQIPFRLSGNGGLEALF 122

Query: 144 NGVPGIGVSRSNGGDYFIGPGLEELFEQLSANDRRGPPPASRSSIDAMPVVKITQRHIRS 203
           +G PG+  +R N GDYF+GPGLEELFEQLSANDRRGP PA+RSSIDAMP VKITQRH+R+
Sbjct: 123 SGSPGVAFARGNAGDYFVGPGLEELFEQLSANDRRGPAPATRSSIDAMPTVKITQRHLRT 182

Query: 204 NSHCPVCQDKFELGSEARKMPCDHMYHSDCIVPWLVQHNSCPVCRQELPAQGSGGSHS-- 263
           +SHCPVC+DKFELGSEAR+MPC+H+YHSDCIVPWLVQHNSCPVCRQELP QGS   HS  
Sbjct: 183 DSHCPVCKDKFELGSEARQMPCNHLYHSDCIVPWLVQHNSCPVCRQELPPQGSNSGHSYQ 242

Query: 264 SSGSNNLNRNSRERENSRTNQGRRNPFSSLWPFRASSSDSNHSATTGSSSPAVHESTQHQ 323
           SS S + N N   RENSR  +GRRNP S LWPFR+S+S SNH  T GSSSP +HE+  HQ
Sbjct: 243 SSSSRSRNSNYSGRENSR--EGRRNPLSYLWPFRSSNSSSNHDETPGSSSPTMHEN-NHQ 302

Query: 324 TGYSGWPFD 328
            GYSGWPF+
Sbjct: 303 MGYSGWPFN 308

[Close]
BLAST of Cp4.1LG08g06780 vs. NCBI nr
Match: gi|567875731|ref|XP_006430455.1| (hypothetical protein CICLE_v10012279mg [Citrus clementina])

HSP 1 Score: 441.4 bits (1134), Expect = 1.4e-120
Identity = 211/308 (68.51%), Postives = 247/308 (80.19%), Query Frame = 1 

Query: 24  SSRNTHWCYRCEQPVQLRGRDMVCASCNGGFVQELDEMMERGPLDFFGANGHEYHNRRLG 83
           S RNTHWCYRC +PV+L+G D VC  C+GGFVQELD+M+   PLDFFG +  E  ++RLG
Sbjct: 3   SGRNTHWCYRCRRPVRLQGEDAVCLYCSGGFVQELDDMVSVSPLDFFGLDNDEERDQRLG 62

Query: 84  LLELFSNFMRQRLIDRN--DMRGRLESIPDHGSGFGPWLIFGGQIPVRLSGHGGFEAFFN 143
           L+E FS FMR R+ DR+  D+RGR +S P+HG GFGP LIFGGQIP+RLSG+ GFEA F 
Sbjct: 63  LMEAFSAFMRHRMADRHSHDIRGRYDSTPEHGQGFGPLLIFGGQIPLRLSGNSGFEAIFG 122

Query: 144 GVPGIGVSRSNGGDYFIGPGLEELFEQLSANDRRGPPPASRSSIDAMPVVKITQRHIRSN 203
           G PG+G +R N GDYFIGPGLEELFEQLSAN RRGPPPA+RS+IDAMP V+ITQRH+RS+
Sbjct: 123 GAPGLGFARGNTGDYFIGPGLEELFEQLSANGRRGPPPAARSAIDAMPTVRITQRHLRSD 182

Query: 204 SHCPVCQDKFELGSEARKMPCDHMYHSDCIVPWLVQHNSCPVCRQELPAQGSGGS--HSS 263
           SHCPVCQDKFELGSEAR+MPC+H+YHSDCIVPWLVQHNSCPVCRQELP QGS  S  H S
Sbjct: 183 SHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELPLQGSSSSRIHQS 242

Query: 264 SGSNNLNRNSRERENSRTNQGRRNPFSSLWPFRASSSDSNHSATTGSSSPAVHESTQHQT 323
           S   + + +     + R NQGRRN FS  WPFR+S+S SNH+ TT SSSPA+HE+  H  
Sbjct: 243 SSGQSRSTSFGSNGSGRENQGRRNLFSGFWPFRSSNSSSNHNGTTESSSPAMHENNPHM- 302

Query: 324 GYSGWPFD 328
           GYSGWPFD
Sbjct: 303 GYSGWPFD 309

The following BLAST results are available for this feature:
BLAST of Cp4.1LG08g06780 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RHC1A_ARATH3.4e-8755.05Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana GN=RHC1A PE=2... [more]
RING1_GOSHI1.0e-3533.78E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=1 SV=1[more]
RNG1L_ARATH2.1e-3331.61E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1... [more]
RDUF2_ARATH1.2e-2832.31E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana GN=DURF2 PE=1 SV=1[more]
RDUF1_ARATH2.7e-2832.10E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis thaliana GN=RDUF1 PE=1 SV=1[more]
BLAST of Cp4.1LG08g06780 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LCH6_CUCSA8.1e-16590.49Uncharacterized protein OS=Cucumis sativus GN=Csa_3G822250 PE=4 SV=1[more]
B9HDT7_POPTR5.5e-12169.26Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0006s03070g PE=4 SV=2[more]
V4SSL7_9ROSI9.4e-12168.51Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012279mg PE=4 SV=1[more]
A0A067EQC1_CITSI2.7e-12068.18Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g021656mg PE=4 SV=1[more]
B9IHK2_POPTR1.0e-11968.28Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0016s02910g PE=4 SV=1[more]
BLAST of Cp4.1LG08g06780 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G40830.21.9e-8855.05 RING-H2 finger C1A[more]
AT3G56580.21.6e-8252.71 RING/U-box superfamily protein[more]
AT3G10815.15.4e-3547.80 RING/U-box superfamily protein[more]
AT3G19950.11.2e-3431.61 RING/U-box superfamily protein[more]
AT5G59550.16.8e-3032.31 zinc finger (C3HC4-type RING finger) family protein[more]
BLAST of Cp4.1LG08g06780 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449437755|ref|XP_004136656.1|1.2e-16490.49PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis sativus][more]
gi|659085191|ref|XP_008443292.1|1.3e-16389.84PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis melo][more]
gi|568856863|ref|XP_006481992.1|2.7e-12168.83PREDICTED: E3 ubiquitin-protein ligase RING1-like [Citrus sinensis][more]
gi|566174207|ref|XP_002308856.2|7.9e-12169.26zinc finger family protein [Populus trichocarpa][more]
gi|567875731|ref|XP_006430455.1|1.4e-12068.51hypothetical protein CICLE_v10012279mg [Citrus clementina][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0008152 metabolic process
biological_process GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process
biological_process GO:0000209 protein polyubiquitination
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0016874 ligase activity
molecular_function GO:0061630 ubiquitin protein ligase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG08g06780.1Cp4.1LG08g06780.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 203..245
score: 2.1
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 204..244
score: 2.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 204..245
score: 12
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 200..249
score: 1.1
NoneNo IPR availablePANTHERPTHR22763RING ZINC FINGER PROTEINcoord: 9..327
score: 4.1E
NoneNo IPR availablePANTHERPTHR22763:SF44E3 UBIQUITIN LIGASEcoord: 9..327
score: 4.1E
NoneNo IPR availablePFAMPF14369zinc_ribbon_9coord: 27..58
score: 5.
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 184..251
score: 3.53