CmoCh06G009390 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh06G009390
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
Description(E3 ubiquitin ligase) (RING finger family protein)
LocationCmo_Chr06 : 7087751 .. 7088668 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGAGTAGGAACACCCATTGGTGTTACAGATGTGAGCAGCCAGTTCAACTCCGTGGGCGGGACATGGTTTGCGCTAGCTGTAATGGAGGATTTGTTCAAGAACTCGATGAAATGATGGAAAGAGATCCCCTTGATTTCTTTGGAGCCAATGGTCATGAATACCACAATCGGAGGCTTGGACTCCTGGAGCTTTTCTCAAACTTTATGAGGCAACGGTTGATAGACAGAAATGATATGAGGGGAAGGTTGGAATCTATTCCAGATCATGGTTCAGGATTTGGTCCTTGGTTGATCTTTGGTGGCCAAATTCCTGTTAGGTTGTCTGGACATGGTGGGTTTGAAGCCTTTTTTAATGGGGTTCCTGGAATTGGTGTGAGTAGGAGCAATGGTGGTGATTATTTTATTGGTCCTGGACTTGAAGAATTGTTTGAACAGCTTTCAGCAAACGACCGACGCGGACCACCCCCAGCATCTAGATCTTCAATCGATGCAATGCCTGTTGTTAAAATTACGCAAAGACACATCCGTTCGAATTCACACTGCCCTGTTTGCCAAGATAAATTTGAATTAGGGACTGAAGCTAGGAAAATGCCATGTGACCATATGTATCATTCAGATTGTATAGTTCCCTGGCTTGTCCAGCACAACTCCTGCCCTGTTTGCCGCCAAGAGCTGCCTGCACAAGGGTCAGGTGGTATCCACAGCTCGTCTGGAAGCAACAATCTTAGTCGAAACAGCCGAGAGAGGGAGAATAGTAGGACAAATCAAGGAAGGAGGAACCCATTTTCAAGTTTATGGCCATTCCGAGCGTCAAGTTCTGACTCAAACCATAGTGCGACCACTGGAAGCAGCTCACCAGCCCTACATGAGAGCACCCAACACCAAACAGGGTATTCTGGATGGCCTTTCGACTAG

mRNA sequence

ATGTCGAGTAGGAACACCCATTGGTGTTACAGATGTGAGCAGCCAGTTCAACTCCGTGGGCGGGACATGGTTTGCGCTAGCTGTAATGGAGGATTTGTTCAAGAACTCGATGAAATGATGGAAAGAGATCCCCTTGATTTCTTTGGAGCCAATGGTCATGAATACCACAATCGGAGGCTTGGACTCCTGGAGCTTTTCTCAAACTTTATGAGGCAACGGTTGATAGACAGAAATGATATGAGGGGAAGGTTGGAATCTATTCCAGATCATGGTTCAGGATTTGGTCCTTGGTTGATCTTTGGTGGCCAAATTCCTGTTAGGTTGTCTGGACATGGTGGGTTTGAAGCCTTTTTTAATGGGGTTCCTGGAATTGGTGTGAGTAGGAGCAATGGTGGTGATTATTTTATTGGTCCTGGACTTGAAGAATTGTTTGAACAGCTTTCAGCAAACGACCGACGCGGACCACCCCCAGCATCTAGATCTTCAATCGATGCAATGCCTGTTGTTAAAATTACGCAAAGACACATCCGTTCGAATTCACACTGCCCTGTTTGCCAAGATAAATTTGAATTAGGGACTGAAGCTAGGAAAATGCCATGTGACCATATGTATCATTCAGATTGTATAGTTCCCTGGCTTGTCCAGCACAACTCCTGCCCTGTTTGCCGCCAAGAGCTGCCTGCACAAGGGTCAGGTGGTATCCACAGCTCGTCTGGAAGCAACAATCTTAGTCGAAACAGCCGAGAGAGGGAGAATAGTAGGACAAATCAAGGAAGGAGGAACCCATTTTCAAGTTTATGGCCATTCCGAGCGTCAAGTTCTGACTCAAACCATAGTGCGACCACTGGAAGCAGCTCACCAGCCCTACATGAGAGCACCCAACACCAAACAGGGTATTCTGGATGGCCTTTCGACTAG

Coding sequence (CDS)

ATGTCGAGTAGGAACACCCATTGGTGTTACAGATGTGAGCAGCCAGTTCAACTCCGTGGGCGGGACATGGTTTGCGCTAGCTGTAATGGAGGATTTGTTCAAGAACTCGATGAAATGATGGAAAGAGATCCCCTTGATTTCTTTGGAGCCAATGGTCATGAATACCACAATCGGAGGCTTGGACTCCTGGAGCTTTTCTCAAACTTTATGAGGCAACGGTTGATAGACAGAAATGATATGAGGGGAAGGTTGGAATCTATTCCAGATCATGGTTCAGGATTTGGTCCTTGGTTGATCTTTGGTGGCCAAATTCCTGTTAGGTTGTCTGGACATGGTGGGTTTGAAGCCTTTTTTAATGGGGTTCCTGGAATTGGTGTGAGTAGGAGCAATGGTGGTGATTATTTTATTGGTCCTGGACTTGAAGAATTGTTTGAACAGCTTTCAGCAAACGACCGACGCGGACCACCCCCAGCATCTAGATCTTCAATCGATGCAATGCCTGTTGTTAAAATTACGCAAAGACACATCCGTTCGAATTCACACTGCCCTGTTTGCCAAGATAAATTTGAATTAGGGACTGAAGCTAGGAAAATGCCATGTGACCATATGTATCATTCAGATTGTATAGTTCCCTGGCTTGTCCAGCACAACTCCTGCCCTGTTTGCCGCCAAGAGCTGCCTGCACAAGGGTCAGGTGGTATCCACAGCTCGTCTGGAAGCAACAATCTTAGTCGAAACAGCCGAGAGAGGGAGAATAGTAGGACAAATCAAGGAAGGAGGAACCCATTTTCAAGTTTATGGCCATTCCGAGCGTCAAGTTCTGACTCAAACCATAGTGCGACCACTGGAAGCAGCTCACCAGCCCTACATGAGAGCACCCAACACCAAACAGGGTATTCTGGATGGCCTTTCGACTAG
Homology
[Close]
BLAST of CmoCh06G009390 vs. Swiss-Prot
Match: RHC1A_ARATH (Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana GN=RHC1A PE=2 SV=1)

HSP 1 Score: 324.3 bits (830), Expect = 1.4e-87
Identity = 179/328 (54.57%), Postives = 224/328 (68.29%), Query Frame = 1 

Query: 2   SSRNTHWCYRCEQPVQLRGRDMVCASCNGGFVQELDEMMERDPLDFFGAN-GHEYHNRRL 61
           SSRNTHWC+RC++ V+L G++ VC  C GGFV+ELD M +  P D F ++ G    ++  
Sbjct: 3   SSRNTHWCHRCQRAVRLHGQEPVCFYCGGGFVEELD-MAQASPFDMFRSHRGVVERDQTF 62

Query: 62  GLLELFSNFMRQRLIDRN---DMRGR-LESIPDHGSGFGPWLIFGGQIPVRLSGHGGFEA 121
            L++ FS FMR RL +R+   ++RGR + S P++  G  P LIFGGQ+P RL+G    EA
Sbjct: 63  DLMDAFSVFMRNRLAERSHDREIRGRTISSGPENFPGLAPLLIFGGQVPYRLTGDNAVEA 122

Query: 122 FFNG-VPGIGVSRSNGGDYFIGPGLEELFEQLSAND-RRGPPPASRSSIDAMPVVKITQR 181
            FNG  PGIG++R N GDYF GPGLEELFEQLSA   RRGPPPA RS+IDA+P +KI QR
Sbjct: 123 LFNGGSPGIGITRGNTGDYFFGPGLEELFEQLSAGTTRRGPPPAPRSAIDALPTIKIAQR 182

Query: 182 HIRSN-SHCPVCQDKFELGTEARKMPCDHMYHSDCIVPWLVQHNSCPVCRQELPAQGSGG 241
           H+RS+ S+CPVC+D+FELG+EA++MPC+H+YHSDCIVPWLVQHNSCPVCRQELP+  + G
Sbjct: 183 HLRSSDSNCPVCKDEFELGSEAKQMPCNHIYHSDCIVPWLVQHNSCPVCRQELPS--ASG 242

Query: 242 IHSSSGSNNLSRN-----SRERENSRTN-QGRRNPFSSLWPFRASSSDSNHSATTG---- 301
             SS      +RN     S    NSR N   RRNPFSS WPFR+S S S+ +   G    
Sbjct: 243 PSSSQNRTTPTRNYRSSSSSSSSNSRENGNERRNPFSSFWPFRSSGSSSSSTQNRGGTRN 302

Query: 302 ---SSSPALHESTQHQ---TGYSGWPFD 306
              S     +   QHQ    GYSGWPFD
Sbjct: 303 SDTSDENHNYHQQQHQQSYMGYSGWPFD 327

[Close]
BLAST of CmoCh06G009390 vs. Swiss-Prot
Match: RING1_GOSHI (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=1 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 8.6e-37
Identity = 101/296 (34.12%), Postives = 142/296 (47.97%), Query Frame = 1 

Query: 8   WCYRCEQPVQLR----GRDMVCASCNGGFVQELDEMMERDPLDFFGANGHE--YHNRRLG 67
           +CY+C + V +       D  C  CN GF++E D         F   N +   +H+  L 
Sbjct: 24  FCYQCNRTVNVTISPPSSDPTCPICNEGFLEEYDNPNPNQGSGFLNPNPNSIPFHDLFLT 83

Query: 68  LLELFSNFM-------------RQRLIDRND--MRGRLESIPDHGSGFGPWLIFGGQIPV 127
           L + F++ +                 ID N+  + G   S       F P+      +  
Sbjct: 84  LSDPFASLLPLLFPSSSSTTTSSSASIDPNNPSLSGPTRSGRGDPFAFDPFTFIQNHLND 143

Query: 128 RLSGHGGFEAFFNGVPGIGVSR--SNGGDYFIGPGLEELFEQLSAND--RRGPPPASRSS 187
             S     E      P     R  +N GDYFIGPGLE+L +QL+ ND  R G PPAS+S+
Sbjct: 144 LRSSGAQIEFVIQNNPSDQGFRLPANIGDYFIGPGLEQLIQQLAENDPNRYGTPPASKSA 203

Query: 188 IDAMPVVKITQRHIRSN-SHCPVCQDKFELGTEARKMPCDHMYHSDCIVPWLVQHNSCPV 247
           I+A+P+V IT+ ++ S  + C VC D FE GTEA++MPC H+YH DC++PWL  HNSCPV
Sbjct: 204 IEALPLVNITKSNLNSEFNQCAVCMDDFEEGTEAKQMPCKHLYHKDCLLPWLELHNSCPV 263

Query: 248 CRQELPAQGSG------GIHSSSGSNNLSRNSRERENSRTNQGRRNPFSSLWPFRA 272
           CR ELP           G   +SG N+   + +  +       R    S  WPF+A
Sbjct: 264 CRHELPTDDPDYERRVRGAQGTSGGNDGDNSGQRSDGDNRTVERSFRISLPWPFQA 319

[Close]
BLAST of CmoCh06G009390 vs. Swiss-Prot
Match: RNG1L_ARATH (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.5e-33
Identity = 97/310 (31.29%), Postives = 143/310 (46.13%), Query Frame = 1 

Query: 8   WCYRCEQPVQLR---GRDMVCASCNGGFVQELDEMMERDPLDF----------------- 67
           +CY+C Q V +      D  C  CN GF++E ++      L+F                 
Sbjct: 22  FCYQCNQTVTISISSSADPFCPICNQGFLEEYEDPNPNQSLNFNPNSSDSFFPMADPFST 81

Query: 68  -----FGANGHEYHNRRLGLLELFSNFMRQRLIDRNDMRGRLESIPDHGSGFGPWLIFGG 127
                FG++        +  + LF   M+ +         R          F P+     
Sbjct: 82  LLPLIFGSSAAAPSG--MDFMSLFGPSMQPQ--------ARSTQQNPQSDAFDPFTFLQN 141

Query: 128 QIPVRLSGHGGFEAFFNGVPGIGVSRSNG--GDYFIGPGLEELFEQLSAND--RRGPPPA 187
            +    S    FE      P    +R  G  GDYF GPGLE+L +QL+ ND  R G PPA
Sbjct: 142 HLQTLRSSGTHFEFVIENHPSDPGNRMPGNFGDYFFGPGLEQLIQQLAENDPNRYGTPPA 201

Query: 188 SRSSIDAMPVVKITQRHIRSN-SHCPVCQDKFELGTEARKMPCDHMYHSDCIVPWLVQHN 247
           S+S+IDA+P VK+T+  ++S  + C VC D+FE G++ ++MPC H++H DC++PWL  HN
Sbjct: 202 SKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELHN 261

Query: 248 SCPVCRQELPAQGSGGIHSSSGSNNLSRNSRERENSRTNQGRRNPFSSL---WPFRASSS 285
           SCPVCR ELP       + S GS          +   + +G++ P  S+   WPFR    
Sbjct: 262 SCPVCRFELPTDDPDYENRSQGSQG------SGDGQGSVEGQQTPRFSIQLPWPFRRQDG 315

[Close]
BLAST of CmoCh06G009390 vs. Swiss-Prot
Match: RDUF2_ARATH (E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana GN=DURF2 PE=1 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 3.0e-29
Identity = 83/248 (33.47%), Postives = 124/248 (50.00%), Query Frame = 1 

Query: 6   THWCYRCEQPVQL---RGRDMV----CASCNGGFVQELDEMMERDPLDFFGANGHEYHNR 65
           ++WCY C + V +   +G   V    C  C+GGF++++++           A+       
Sbjct: 17  SYWCYSCTRFVSVWADQGTTTVGSVACPHCDGGFIEQINDSSSAATELTIPAS------- 76

Query: 66  RLGLLELFSNFMRQRLIDRNDMRGRLESIPDHGSGFGPWLIFGGQIPVRLSGHGG----- 125
                E+ S    +R + R    GR  S       F P ++  G    R  G  G     
Sbjct: 77  ----TEVRSINNNRRSVIRRRRSGRRPS-------FNPVIVLQGGAGEREEGEEGDAARD 136

Query: 126 ---FEAFFNGVPGIGVSR--SNGGDYFIGPGLEELFEQLSAND-------RRGPPPASRS 185
              FE +++   G G+     +  +  +G G E L EQLS  +       R G PPAS+S
Sbjct: 137 RRAFEFYYDDGSGSGLRPLPDSVSEILMGSGFERLLEQLSQIEASATGIGRSGNPPASKS 196

Query: 186 SIDAMPVVKITQRHIRSNSHCPVCQDKFELGTEARKMPCDHMYHSDCIVPWLVQHNSCPV 230
           +I+++P V+I+  HI S ++C VC + FE  TEAR+MPC H++H DCIVPWL   NSCPV
Sbjct: 197 AIESLPRVEISDCHIGSEANCAVCTEIFETETEAREMPCKHLFHDDCIVPWLSIRNSCPV 246

[Close]
BLAST of CmoCh06G009390 vs. Swiss-Prot
Match: RDUF1_ARATH (E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis thaliana GN=RDUF1 PE=1 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.5e-28
Identity = 78/243 (32.10%), Postives = 125/243 (51.44%), Query Frame = 1 

Query: 6   THWCYRCEQPVQL-----RGRDMVCASCNGGFVQELDEMMERDPLDFFGANGHEYHNRRL 65
           ++WCY C + + +         ++C  CNGGF++E+++      +    A+  E  +   
Sbjct: 30  SYWCYSCTRFISVWEDQDANAGVLCPYCNGGFIEEIEDS-SNSTVAAIPASTPEVRS--- 89

Query: 66  GLLELFSNFMRQRLIDRNDMRGRLESIPDHGSGFGPWLIFGGQIPVRLSGHGG------F 125
            + E   + +R+R  +R      +  I  HG G G      G+      G G       +
Sbjct: 90  -VEETHRSIIRRRRSNRRTSFNPV--IVLHGGGGGG----AGERVENEEGDGATRERRAY 149

Query: 126 EAFFNGVPGIGVSR--SNGGDYFIGPGLEELFEQLSAND-------RRGPPPASRSSIDA 185
           E +++   G G+     +  +  +G G E L EQLS  +       R G PPAS+S+I++
Sbjct: 150 EFYYDDGSGSGLRPLPDSVSEILMGSGFERLLEQLSQIEASGNGIGRSGNPPASKSAIES 209

Query: 186 MPVVKITQRHIRSNSHCPVCQDKFELGTEARKMPCDHMYHSDCIVPWLVQHNSCPVCRQE 229
           +P V+I+  H ++ ++C VC + FE G E R+MPC H++H DCIVPWL   NSCPVCR E
Sbjct: 210 LPRVEISDCHTKAEANCAVCTEVFEAGIEGREMPCKHIFHGDCIVPWLSIRNSCPVCRFE 261

[Close]
BLAST of CmoCh06G009390 vs. TrEMBL
Match: A0A0A0LCH6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G822250 PE=4 SV=1)

HSP 1 Score: 589.3 bits (1518), Expect = 2.6e-165
Identity = 276/305 (90.49%), Postives = 291/305 (95.41%), Query Frame = 1 

Query: 1   MSSRNTHWCYRCEQPVQLRGRDMVCASCNGGFVQELDEMMERDPLDFFGANGHEYHNRRL 60
           MS+ NTHWCYRCEQPV+LRGRDM C SCNGGFVQELDEMMER PLD FGA+G+EY NRRL
Sbjct: 1   MSTANTHWCYRCEQPVRLRGRDMTCLSCNGGFVQELDEMMERSPLDLFGASGNEYQNRRL 60

Query: 61  GLLELFSNFMRQRLIDRNDMRGRLESIPDHGSGFGPWLIFGGQIPVRLSGHGGFEAFFNG 120
           GLLELFSNFMRQRL+DRND+RGRL+SIPDHG GFGPWLIFGGQIPVRLSGHGGFEAFFNG
Sbjct: 61  GLLELFSNFMRQRLVDRNDIRGRLDSIPDHGPGFGPWLIFGGQIPVRLSGHGGFEAFFNG 120

Query: 121 VPGIGVSRSNGGDYFIGPGLEELFEQLSANDRRGPPPASRSSIDAMPVVKITQRHIRSNS 180
           VPGIGVSRSNGGDYFIGPGLEELFEQLSANDRRGPPPASRSSIDAMPVVKITQRHIRSNS
Sbjct: 121 VPGIGVSRSNGGDYFIGPGLEELFEQLSANDRRGPPPASRSSIDAMPVVKITQRHIRSNS 180

Query: 181 HCPVCQDKFELGTEARKMPCDHMYHSDCIVPWLVQHNSCPVCRQELPAQGSGGIHSSSGS 240
           HCPVCQDKFELG+EAR+MPCDHMYHSDCIVPWLVQHNSCPVCRQELPAQGSG  HSSSGS
Sbjct: 181 HCPVCQDKFELGSEARQMPCDHMYHSDCIVPWLVQHNSCPVCRQELPAQGSGSSHSSSGS 240

Query: 241 NNLSRNSRERENSRTNQGRRNPFSSLWPFRASSSDSNHSATTGSSSPALHESTQHQTGYS 300
           NN SRNSR+REN RT QGRRNPF+SLWPFRASSS+SNHSATTGS+SPALHE+ QH+TGY 
Sbjct: 241 NNSSRNSRDRENGRTTQGRRNPFTSLWPFRASSSNSNHSATTGSNSPALHETNQHETGYY 300

Query: 301 GWPFD 306
           GWPFD
Sbjct: 301 GWPFD 305

[Close]
BLAST of CmoCh06G009390 vs. TrEMBL
Match: V4SSL7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012279mg PE=4 SV=1)

HSP 1 Score: 444.1 bits (1141), Expect = 1.4e-121
Identity = 211/308 (68.51%), Postives = 247/308 (80.19%), Query Frame = 1 

Query: 2   SSRNTHWCYRCEQPVQLRGRDMVCASCNGGFVQELDEMMERDPLDFFGANGHEYHNRRLG 61
           S RNTHWCYRC +PV+L+G D VC  C+GGFVQELD+M+   PLDFFG +  E  ++RLG
Sbjct: 3   SGRNTHWCYRCRRPVRLQGEDAVCLYCSGGFVQELDDMVSVSPLDFFGLDNDEERDQRLG 62

Query: 62  LLELFSNFMRQRLIDRN--DMRGRLESIPDHGSGFGPWLIFGGQIPVRLSGHGGFEAFFN 121
           L+E FS FMR R+ DR+  D+RGR +S P+HG GFGP LIFGGQIP+RLSG+ GFEA F 
Sbjct: 63  LMEAFSAFMRHRMADRHSHDIRGRYDSTPEHGQGFGPLLIFGGQIPLRLSGNSGFEAIFG 122

Query: 122 GVPGIGVSRSNGGDYFIGPGLEELFEQLSANDRRGPPPASRSSIDAMPVVKITQRHIRSN 181
           G PG+G +R N GDYFIGPGLEELFEQLSAN RRGPPPA+RS+IDAMP V+ITQRH+RS+
Sbjct: 123 GAPGLGFARGNTGDYFIGPGLEELFEQLSANGRRGPPPAARSAIDAMPTVRITQRHLRSD 182

Query: 182 SHCPVCQDKFELGTEARKMPCDHMYHSDCIVPWLVQHNSCPVCRQELPAQGSGG--IHSS 241
           SHCPVCQDKFELG+EAR+MPC+H+YHSDCIVPWLVQHNSCPVCRQELP QGS    IH S
Sbjct: 183 SHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELPLQGSSSSRIHQS 242

Query: 242 SGSNNLSRNSRERENSRTNQGRRNPFSSLWPFRASSSDSNHSATTGSSSPALHESTQHQT 301
           S   + S +     + R NQGRRN FS  WPFR+S+S SNH+ TT SSSPA+HE+  H  
Sbjct: 243 SSGQSRSTSFGSNGSGRENQGRRNLFSGFWPFRSSNSSSNHNGTTESSSPAMHENNPHM- 302

Query: 302 GYSGWPFD 306
           GYSGWPFD
Sbjct: 303 GYSGWPFD 309

[Close]
BLAST of CmoCh06G009390 vs. TrEMBL
Match: B9HDT7_POPTR (Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0006s03070g PE=4 SV=2)

HSP 1 Score: 443.7 bits (1140), Expect = 1.8e-121
Identity = 213/309 (68.93%), Postives = 249/309 (80.58%), Query Frame = 1 

Query: 2   SSRNTHWCYRCEQPVQLRGRDMVCASCNGGFVQELDEMMERDPLDFFGANGHEYHNRRLG 61
           SSRNTHWCY C +PV+LRGRD  C  C+GGFVQELD+M   +PLDFFG +G + H+   G
Sbjct: 3   SSRNTHWCYSCRRPVRLRGRDAACPYCSGGFVQELDDMHRINPLDFFGMDGDDDHDNMFG 62

Query: 62  LLELFSNFMRQRLIDRN---DMRGRLESIPDHGSGFGPWLIFGGQIPVRLSGHGGFEAFF 121
           L+E FS FMRQR+ DR+   D+R R +SIP+H  GFGP LIFGGQIP RLSG+GG EA F
Sbjct: 63  LMEAFSAFMRQRMADRSHNHDIRSRSDSIPEHNPGFGPLLIFGGQIPFRLSGNGGLEALF 122

Query: 122 NGVPGIGVSRSNGGDYFIGPGLEELFEQLSANDRRGPPPASRSSIDAMPVVKITQRHIRS 181
           +G PG+  +R N GDYF+GPGLEELFEQLSANDRRGP PA+RSSIDAMP VKITQRH+R+
Sbjct: 123 SGSPGVAFARGNAGDYFVGPGLEELFEQLSANDRRGPAPATRSSIDAMPTVKITQRHLRT 182

Query: 182 NSHCPVCQDKFELGTEARKMPCDHMYHSDCIVPWLVQHNSCPVCRQELPAQGSGGIHSSS 241
           +SHCPVC+DKFELG+EAR+MPC+H+YHSDCIVPWLVQHNSCPVCRQELP QGS   HS  
Sbjct: 183 DSHCPVCKDKFELGSEARQMPCNHLYHSDCIVPWLVQHNSCPVCRQELPPQGSNSGHSYQ 242

Query: 242 GSNNLSRNSR--ERENSRTNQGRRNPFSSLWPFRASSSDSNHSATTGSSSPALHESTQHQ 301
            S++ SRNS    RENSR  +GRRNP S LWPFR+S+S SNH  T GSSSP +HE+  HQ
Sbjct: 243 SSSSRSRNSNYSGRENSR--EGRRNPLSYLWPFRSSNSSSNHDETPGSSSPTMHEN-NHQ 302

Query: 302 TGYSGWPFD 306
            GYSGWPF+
Sbjct: 303 MGYSGWPFN 308

[Close]
BLAST of CmoCh06G009390 vs. TrEMBL
Match: A0A067EQC1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g021656mg PE=4 SV=1)

HSP 1 Score: 442.6 bits (1137), Expect = 3.9e-121
Identity = 210/308 (68.18%), Postives = 247/308 (80.19%), Query Frame = 1 

Query: 2   SSRNTHWCYRCEQPVQLRGRDMVCASCNGGFVQELDEMMERDPLDFFGANGHEYHNRRLG 61
           S RNTHWCYRC +PV+L+G D VC  C+GGFVQELD+M+   PLDFFG +  E  ++RLG
Sbjct: 3   SGRNTHWCYRCRRPVRLQGEDAVCLYCSGGFVQELDDMVSVSPLDFFGLDNDEERDQRLG 62

Query: 62  LLELFSNFMRQRLIDRN--DMRGRLESIPDHGSGFGPWLIFGGQIPVRLSGHGGFEAFFN 121
           L+E FS F+R R+ DR+  D+RGR +S P+HG GFGP LIFGGQIP+RLSG+ GFEA F 
Sbjct: 63  LMEAFSAFVRHRMADRHSHDIRGRYDSTPEHGQGFGPLLIFGGQIPLRLSGNSGFEAIFG 122

Query: 122 GVPGIGVSRSNGGDYFIGPGLEELFEQLSANDRRGPPPASRSSIDAMPVVKITQRHIRSN 181
           G PG+G +R N GDYFIGPGLEELFEQLSAN RRGPPPA+RS+IDAMP V+ITQRH+RS+
Sbjct: 123 GAPGLGFARGNTGDYFIGPGLEELFEQLSANGRRGPPPAARSAIDAMPTVRITQRHLRSD 182

Query: 182 SHCPVCQDKFELGTEARKMPCDHMYHSDCIVPWLVQHNSCPVCRQELPAQGSGG--IHSS 241
           SHCPVCQDKFELG+EAR+MPC+H+YHSDCIVPWLVQHNSCPVCRQELP QGS    IH S
Sbjct: 183 SHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELPLQGSSSSRIHQS 242

Query: 242 SGSNNLSRNSRERENSRTNQGRRNPFSSLWPFRASSSDSNHSATTGSSSPALHESTQHQT 301
           S   + S +     + R NQGRRN FS  WPFR+S+S SNH+ TT SSSPA+HE+  H  
Sbjct: 243 SSGQSRSTSFGSNGSGRENQGRRNLFSGFWPFRSSNSSSNHNGTTESSSPAMHENNPHM- 302

Query: 302 GYSGWPFD 306
           GYSGWPFD
Sbjct: 303 GYSGWPFD 309

[Close]
BLAST of CmoCh06G009390 vs. TrEMBL
Match: B9IHK2_POPTR (Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0016s02910g PE=4 SV=1)

HSP 1 Score: 440.3 bits (1131), Expect = 2.0e-120
Identity = 211/309 (68.28%), Postives = 247/309 (79.94%), Query Frame = 1 

Query: 2   SSRNTHWCYRCEQPVQLRGRDMVCASCNGGFVQELDEMMERDPLDFFGANGHEYHNRRLG 61
           SSRNTHWCY C +PV+LRGRD  C  C+GGFVQELD+M    PLDFFG +  +  ++R G
Sbjct: 3   SSRNTHWCYSCRRPVRLRGRDSACPYCSGGFVQELDDMHRISPLDFFGMDSDDDRDQRFG 62

Query: 62  LLELFSNFMRQRLIDRN---DMRGRLESIPDHGSGFGPWLIFGGQIPVRLSGHGGFEAFF 121
           L+E FS+FMRQR+ DR+   D+R R +S+P H  GFGP LIFGGQ+P RLSG+GGFEA F
Sbjct: 63  LMEAFSDFMRQRMADRSHNHDIRSRSDSVPGHNPGFGPLLIFGGQVPFRLSGNGGFEALF 122

Query: 122 NGVPGIGVSRSNGGDYFIGPGLEELFEQLSANDRRGPPPASRSSIDAMPVVKITQRHIRS 181
           +G PG+  +R N GDYFIGPGLEELFEQLSAND+RGPPPA+RSSIDAMP +KITQ+H+RS
Sbjct: 123 SGAPGVAFARGNAGDYFIGPGLEELFEQLSANDQRGPPPATRSSIDAMPTIKITQKHLRS 182

Query: 182 NSHCPVCQDKFELGTEARKMPCDHMYHSDCIVPWLVQHNSCPVCRQELPAQGSGGIHS-- 241
           +SHCPVC+DKFELG+EAR+MPCDH+YHSDCIVPWLVQHNSCPVCRQELP QGS   HS  
Sbjct: 183 DSHCPVCKDKFELGSEARQMPCDHLYHSDCIVPWLVQHNSCPVCRQELPPQGSSSRHSYQ 242

Query: 242 SSGSNNLSRNSRERENSRTNQGRRNPFSSLWPFRASSSDSNHSATTGSSSPALHESTQHQ 301
           SS S + S N   RENSR   GRRNP S LWPFR+S+S SNH  T  SSSPA+HE+  H 
Sbjct: 243 SSSSRSRSSNYSGRENSR--GGRRNPLSYLWPFRSSNSSSNHDETPESSSPAMHENNPHM 302

Query: 302 TGYSGWPFD 306
            GYSGWPF+
Sbjct: 303 -GYSGWPFN 308

[Close]
BLAST of CmoCh06G009390 vs. TAIR10
Match: AT2G40830.2 (AT2G40830.2 RING-H2 finger C1A)

HSP 1 Score: 324.3 bits (830), Expect = 7.9e-89
Identity = 179/328 (54.57%), Postives = 224/328 (68.29%), Query Frame = 1 

Query: 2   SSRNTHWCYRCEQPVQLRGRDMVCASCNGGFVQELDEMMERDPLDFFGAN-GHEYHNRRL 61
           SSRNTHWC+RC++ V+L G++ VC  C GGFV+ELD M +  P D F ++ G    ++  
Sbjct: 3   SSRNTHWCHRCQRAVRLHGQEPVCFYCGGGFVEELD-MAQASPFDMFRSHRGVVERDQTF 62

Query: 62  GLLELFSNFMRQRLIDRN---DMRGR-LESIPDHGSGFGPWLIFGGQIPVRLSGHGGFEA 121
            L++ FS FMR RL +R+   ++RGR + S P++  G  P LIFGGQ+P RL+G    EA
Sbjct: 63  DLMDAFSVFMRNRLAERSHDREIRGRTISSGPENFPGLAPLLIFGGQVPYRLTGDNAVEA 122

Query: 122 FFNG-VPGIGVSRSNGGDYFIGPGLEELFEQLSAND-RRGPPPASRSSIDAMPVVKITQR 181
            FNG  PGIG++R N GDYF GPGLEELFEQLSA   RRGPPPA RS+IDA+P +KI QR
Sbjct: 123 LFNGGSPGIGITRGNTGDYFFGPGLEELFEQLSAGTTRRGPPPAPRSAIDALPTIKIAQR 182

Query: 182 HIRSN-SHCPVCQDKFELGTEARKMPCDHMYHSDCIVPWLVQHNSCPVCRQELPAQGSGG 241
           H+RS+ S+CPVC+D+FELG+EA++MPC+H+YHSDCIVPWLVQHNSCPVCRQELP+  + G
Sbjct: 183 HLRSSDSNCPVCKDEFELGSEAKQMPCNHIYHSDCIVPWLVQHNSCPVCRQELPS--ASG 242

Query: 242 IHSSSGSNNLSRN-----SRERENSRTN-QGRRNPFSSLWPFRASSSDSNHSATTG---- 301
             SS      +RN     S    NSR N   RRNPFSS WPFR+S S S+ +   G    
Sbjct: 243 PSSSQNRTTPTRNYRSSSSSSSSNSRENGNERRNPFSSFWPFRSSGSSSSSTQNRGGTRN 302

Query: 302 ---SSSPALHESTQHQ---TGYSGWPFD 306
              S     +   QHQ    GYSGWPFD
Sbjct: 303 SDTSDENHNYHQQQHQQSYMGYSGWPFD 327

[Close]
BLAST of CmoCh06G009390 vs. TAIR10
Match: AT3G56580.2 (AT3G56580.2 RING/U-box superfamily protein)

HSP 1 Score: 303.1 bits (775), Expect = 1.9e-82
Identity = 175/339 (51.62%), Postives = 220/339 (64.90%), Query Frame = 1 

Query: 2   SSRNTHWCYRCEQPVQLRGRDMVCASCNGGFVQELD-------EMMERDPLDFFGANGHE 61
           S RNTHWC+RC++ V LR RD VC+ C GGFV+E+D         +ERDP          
Sbjct: 3   SIRNTHWCHRCQRAVWLRARDAVCSYCGGGFVEEIDIGPSRAHRDVERDPT--------- 62

Query: 62  YHNRRLGLLELFSNFMRQRLIDRN---DMRGRLESIPDHG-SGFGPWLIFGGQIPVRLSG 121
                  L+E FS FMR RL +R+   ++ GRL S      S   P LIFGGQ P RL+G
Sbjct: 63  -----FDLMEAFSAFMRSRLAERSYDREISGRLGSAGSESFSNLAPLLIFGGQAPFRLAG 122

Query: 122 --HGGFEAFFNGV-PGIGVSR-SNGGDYFIGPGLEELFEQLSANDR-RGPPPASRSSIDA 181
             +   EAF NG  PGIG++R +N GDYF GPGLEEL EQLS+    RGPPPA +SSIDA
Sbjct: 123 GDNSSVEAFVNGAAPGIGIARGTNAGDYFFGPGLEELIEQLSSGTHHRGPPPAPKSSIDA 182

Query: 182 MPVVKITQRHIRS-NSHCPVCQDKFELGTEARKMPCDHMYHSDCIVPWLVQHNSCPVCRQ 241
           +P +KITQ+H++S +SHCPVC+D+FEL +EA++MPC H+YHSDCIVPWLVQHNSCPVCR+
Sbjct: 183 LPTIKITQKHLKSSDSHCPVCKDEFELKSEAKQMPCHHIYHSDCIVPWLVQHNSCPVCRK 242

Query: 242 ELPAQGSGGIHSSSGSNNLSRNSRERENSRTNQGRRNPFSSLWPFRASSS-------DSN 301
           ELP++GS    SSS  ++ +R++  RENSR    RRN FS+LWPFR+SSS       D+N
Sbjct: 243 ELPSRGS----SSSTQSSQNRSTNGRENSR----RRNIFSNLWPFRSSSSSSTQNRRDTN 302

Query: 302 HSATTGSSSPALHESTQHQ-----------TGYSGWPFD 306
           ++AT        H+  Q Q            GYSGWPFD
Sbjct: 303 NTATAEEGHYHHHQQQQQQHQHQHQQQQSHMGYSGWPFD 319

[Close]
BLAST of CmoCh06G009390 vs. TAIR10
Match: AT3G10815.1 (AT3G10815.1 RING/U-box superfamily protein)

HSP 1 Score: 144.8 bits (364), Expect = 8.6e-35
Identity = 75/159 (47.17%), Postives = 103/159 (64.78%), Query Frame = 1 

Query: 127 SRSNGGDYFIGPGL--EELFEQLSA-NDRRGPPPASRSSIDAMPVVKITQRHIRSNSHCP 186
           +R N     IG  L  EELF +L A  DRRGPPPAS ++I+++  +KI Q+H+  + +CP
Sbjct: 63  NRRNNRRSVIGEQLSFEELFNRLPALQDRRGPPPASLAAINSLQKIKIRQKHLGLDPYCP 122

Query: 187 VCQDKFELGTEARKMPCDHMYHSDCIVPWLVQHNSCPVCRQELPAQGSGGIHSSSGSNNL 246
           VCQD+FE+G++ARKMPC H+YHS+CI+PWLVQ N+CPVCR+ELP                
Sbjct: 123 VCQDQFEIGSDARKMPCKHIYHSECILPWLVQRNTCPVCRKELP---------------- 182

Query: 247 SRNSRERENSRTNQGRRNPFSSLWPFRASSSDSNHSATT 283
               ++R NS     R+NP   LWPFR+S   SNH+ ++
Sbjct: 183 ----QDRNNS-----RKNPLWHLWPFRSSGLASNHNGSS 196

[Close]
BLAST of CmoCh06G009390 vs. TAIR10
Match: AT3G19950.1 (AT3G19950.1 RING/U-box superfamily protein)

HSP 1 Score: 144.8 bits (364), Expect = 8.6e-35
Identity = 97/310 (31.29%), Postives = 143/310 (46.13%), Query Frame = 1 

Query: 8   WCYRCEQPVQLR---GRDMVCASCNGGFVQELDEMMERDPLDF----------------- 67
           +CY+C Q V +      D  C  CN GF++E ++      L+F                 
Sbjct: 22  FCYQCNQTVTISISSSADPFCPICNQGFLEEYEDPNPNQSLNFNPNSSDSFFPMADPFST 81

Query: 68  -----FGANGHEYHNRRLGLLELFSNFMRQRLIDRNDMRGRLESIPDHGSGFGPWLIFGG 127
                FG++        +  + LF   M+ +         R          F P+     
Sbjct: 82  LLPLIFGSSAAAPSG--MDFMSLFGPSMQPQ--------ARSTQQNPQSDAFDPFTFLQN 141

Query: 128 QIPVRLSGHGGFEAFFNGVPGIGVSRSNG--GDYFIGPGLEELFEQLSAND--RRGPPPA 187
            +    S    FE      P    +R  G  GDYF GPGLE+L +QL+ ND  R G PPA
Sbjct: 142 HLQTLRSSGTHFEFVIENHPSDPGNRMPGNFGDYFFGPGLEQLIQQLAENDPNRYGTPPA 201

Query: 188 SRSSIDAMPVVKITQRHIRSN-SHCPVCQDKFELGTEARKMPCDHMYHSDCIVPWLVQHN 247
           S+S+IDA+P VK+T+  ++S  + C VC D+FE G++ ++MPC H++H DC++PWL  HN
Sbjct: 202 SKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELHN 261

Query: 248 SCPVCRQELPAQGSGGIHSSSGSNNLSRNSRERENSRTNQGRRNPFSSL---WPFRASSS 285
           SCPVCR ELP       + S GS          +   + +G++ P  S+   WPFR    
Sbjct: 262 SCPVCRFELPTDDPDYENRSQGSQG------SGDGQGSVEGQQTPRFSIQLPWPFRRQDG 315

[Close]
BLAST of CmoCh06G009390 vs. TAIR10
Match: AT1G60360.1 (AT1G60360.1 RING/U-box superfamily protein)

HSP 1 Score: 132.5 bits (332), Expect = 4.4e-31
Identity = 98/294 (33.33%), Postives = 141/294 (47.96%), Query Frame = 1 

Query: 7   HWCYRCEQPVQLRGR---DMVCASCNGGFVQELDEMMERDPLDFFGANGHEYHNRRLGLL 66
           +WCY C++ V++      ++ C  C   FV E+ E  +R    F  A      +    LL
Sbjct: 24  YWCYHCDRMVRIASSNPSEIACPRCLRQFVVEI-ETRQRPRFTFNHATPPFDASPEARLL 83

Query: 67  ELFSNFMRQRLIDRND----MRGRLESI--------PDHGSGFGPWLIFGGQIPVR---- 126
           E  S       I R      +R R  +I        P H        +  G +P+     
Sbjct: 84  EALSLMFEPATIGRFGADPFLRARSRNILEPESRPRPQHRRRHSLDNVNNGGLPLPRRTY 143

Query: 127 --------LSGHGGFEAFFNGVPGIGVSRSNGGDYFIGPG-LEELFEQLSANDRRGPPPA 186
                    S  G   A  N  P   V   N  DYF G   LE+L EQL+ +DR GPPPA
Sbjct: 144 VILRPNNPTSPLGNIIAPPNQAPPRHV---NSHDYFTGASSLEQLIEQLTQDDRPGPPPA 203

Query: 187 SRSSIDAMPVVKITQRHIRSN-SHCPVCQDKFELGTEARKMPCDHMYHSDCIVPWLVQHN 246
           S  +I+++P VKIT +H+ ++ S C VC ++F +G +A ++PC H+YH DCIVPWL  +N
Sbjct: 204 SEPTINSLPSVKITPQHLTNDMSQCTVCMEEFIVGGDATELPCKHIYHKDCIVPWLRLNN 263

Query: 247 SCPVCRQELPAQGSGGIHSSSGSNNLSRNSRERENSRTNQGRRNPFSSLWPFRA 272
           SCP+CR++LP   +    S   SN + ++  ER   R  Q       ++WPFRA
Sbjct: 264 SCPICRRDLPLVNTVA-ESRERSNPIRQDMPERRRPRWMQ-----LGNIWPFRA 307

[Close]
BLAST of CmoCh06G009390 vs. NCBI nr
Match: gi|449437755|ref|XP_004136656.1| (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis sativus])

HSP 1 Score: 589.3 bits (1518), Expect = 3.7e-165
Identity = 276/305 (90.49%), Postives = 291/305 (95.41%), Query Frame = 1 

Query: 1   MSSRNTHWCYRCEQPVQLRGRDMVCASCNGGFVQELDEMMERDPLDFFGANGHEYHNRRL 60
           MS+ NTHWCYRCEQPV+LRGRDM C SCNGGFVQELDEMMER PLD FGA+G+EY NRRL
Sbjct: 1   MSTANTHWCYRCEQPVRLRGRDMTCLSCNGGFVQELDEMMERSPLDLFGASGNEYQNRRL 60

Query: 61  GLLELFSNFMRQRLIDRNDMRGRLESIPDHGSGFGPWLIFGGQIPVRLSGHGGFEAFFNG 120
           GLLELFSNFMRQRL+DRND+RGRL+SIPDHG GFGPWLIFGGQIPVRLSGHGGFEAFFNG
Sbjct: 61  GLLELFSNFMRQRLVDRNDIRGRLDSIPDHGPGFGPWLIFGGQIPVRLSGHGGFEAFFNG 120

Query: 121 VPGIGVSRSNGGDYFIGPGLEELFEQLSANDRRGPPPASRSSIDAMPVVKITQRHIRSNS 180
           VPGIGVSRSNGGDYFIGPGLEELFEQLSANDRRGPPPASRSSIDAMPVVKITQRHIRSNS
Sbjct: 121 VPGIGVSRSNGGDYFIGPGLEELFEQLSANDRRGPPPASRSSIDAMPVVKITQRHIRSNS 180

Query: 181 HCPVCQDKFELGTEARKMPCDHMYHSDCIVPWLVQHNSCPVCRQELPAQGSGGIHSSSGS 240
           HCPVCQDKFELG+EAR+MPCDHMYHSDCIVPWLVQHNSCPVCRQELPAQGSG  HSSSGS
Sbjct: 181 HCPVCQDKFELGSEARQMPCDHMYHSDCIVPWLVQHNSCPVCRQELPAQGSGSSHSSSGS 240

Query: 241 NNLSRNSRERENSRTNQGRRNPFSSLWPFRASSSDSNHSATTGSSSPALHESTQHQTGYS 300
           NN SRNSR+REN RT QGRRNPF+SLWPFRASSS+SNHSATTGS+SPALHE+ QH+TGY 
Sbjct: 241 NNSSRNSRDRENGRTTQGRRNPFTSLWPFRASSSNSNHSATTGSNSPALHETNQHETGYY 300

Query: 301 GWPFD 306
           GWPFD
Sbjct: 301 GWPFD 305

[Close]
BLAST of CmoCh06G009390 vs. NCBI nr
Match: gi|659085191|ref|XP_008443292.1| (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis melo])

HSP 1 Score: 585.9 bits (1509), Expect = 4.1e-164
Identity = 274/305 (89.84%), Postives = 290/305 (95.08%), Query Frame = 1 

Query: 1   MSSRNTHWCYRCEQPVQLRGRDMVCASCNGGFVQELDEMMERDPLDFFGANGHEYHNRRL 60
           MS+ NTHWCYRCEQPV+LRGRDM C SCNGGFVQELDEMMER PLD FGA+G+EY NRRL
Sbjct: 1   MSTGNTHWCYRCEQPVRLRGRDMTCLSCNGGFVQELDEMMERSPLDLFGASGNEYQNRRL 60

Query: 61  GLLELFSNFMRQRLIDRNDMRGRLESIPDHGSGFGPWLIFGGQIPVRLSGHGGFEAFFNG 120
           GLLELFSNFMRQR++DRND+RGRL+SIPDHG GFGPWLIFGGQIPVRLSGHGGFEAFFNG
Sbjct: 61  GLLELFSNFMRQRMVDRNDIRGRLDSIPDHGPGFGPWLIFGGQIPVRLSGHGGFEAFFNG 120

Query: 121 VPGIGVSRSNGGDYFIGPGLEELFEQLSANDRRGPPPASRSSIDAMPVVKITQRHIRSNS 180
           VPGIGVSRSNGGDYFIGPGLEELFEQLSANDRRGPPPASRSSIDAMPVVKITQRHIRSNS
Sbjct: 121 VPGIGVSRSNGGDYFIGPGLEELFEQLSANDRRGPPPASRSSIDAMPVVKITQRHIRSNS 180

Query: 181 HCPVCQDKFELGTEARKMPCDHMYHSDCIVPWLVQHNSCPVCRQELPAQGSGGIHSSSGS 240
           HCPVCQDKFELG+EAR+MPCDHMYHSDCIVPWLVQHNSCPVCRQELPAQGS   HSSSGS
Sbjct: 181 HCPVCQDKFELGSEARQMPCDHMYHSDCIVPWLVQHNSCPVCRQELPAQGSSSSHSSSGS 240

Query: 241 NNLSRNSRERENSRTNQGRRNPFSSLWPFRASSSDSNHSATTGSSSPALHESTQHQTGYS 300
           NN SRNSR+RENSRT QGRRNPF+SLWPFRASSS+SNH ATTGS+SPALHE+ QH+TGY 
Sbjct: 241 NNSSRNSRDRENSRTTQGRRNPFTSLWPFRASSSNSNHGATTGSNSPALHETNQHETGYY 300

Query: 301 GWPFD 306
           GWPFD
Sbjct: 301 GWPFD 305

[Close]
BLAST of CmoCh06G009390 vs. NCBI nr
Match: gi|568856863|ref|XP_006481992.1| (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Citrus sinensis])

HSP 1 Score: 446.4 bits (1147), Expect = 3.9e-122
Identity = 212/308 (68.83%), Postives = 247/308 (80.19%), Query Frame = 1 

Query: 2   SSRNTHWCYRCEQPVQLRGRDMVCASCNGGFVQELDEMMERDPLDFFGANGHEYHNRRLG 61
           S RNTHWCYRC +PV+L+G D VC  C+GGFVQELD+M+   PLDFFG +  E  ++RLG
Sbjct: 3   SGRNTHWCYRCRRPVRLQGEDAVCLYCSGGFVQELDDMVSVSPLDFFGLDNDEERDQRLG 62

Query: 62  LLELFSNFMRQRLIDRN--DMRGRLESIPDHGSGFGPWLIFGGQIPVRLSGHGGFEAFFN 121
           L+E FS FMR R+ DR+  D+RGR +S P+HG GFGP LIFGGQIP+RLSG+ GFEA F 
Sbjct: 63  LMEAFSAFMRHRMADRHSHDIRGRYDSTPEHGQGFGPLLIFGGQIPLRLSGNSGFEAIFG 122

Query: 122 GVPGIGVSRSNGGDYFIGPGLEELFEQLSANDRRGPPPASRSSIDAMPVVKITQRHIRSN 181
           G PG+G +R N GDYFIGPGLEELFEQLSAN+RRGPPPA+RS+IDAMP V+ITQRH+RS+
Sbjct: 123 GAPGLGFARGNTGDYFIGPGLEELFEQLSANNRRGPPPAARSAIDAMPTVRITQRHLRSD 182

Query: 182 SHCPVCQDKFELGTEARKMPCDHMYHSDCIVPWLVQHNSCPVCRQELPAQGSGG--IHSS 241
           SHCPVCQDKFELG+EAR+MPC+H+YHSDCIVPWLVQHNSCPVCRQELP QGS    IH S
Sbjct: 183 SHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELPLQGSSSSRIHQS 242

Query: 242 SGSNNLSRNSRERENSRTNQGRRNPFSSLWPFRASSSDSNHSATTGSSSPALHESTQHQT 301
           S   + S       N R NQGRRN FS  WPFR+S+S SNH+ TT SSSPA+HE+  H  
Sbjct: 243 SSGQSRSTTFGSNGNGRENQGRRNLFSGFWPFRSSNSSSNHNGTTESSSPAMHENNPHM- 302

Query: 302 GYSGWPFD 306
           GYSGWPFD
Sbjct: 303 GYSGWPFD 309

[Close]
BLAST of CmoCh06G009390 vs. NCBI nr
Match: gi|567875731|ref|XP_006430455.1| (hypothetical protein CICLE_v10012279mg [Citrus clementina])

HSP 1 Score: 444.1 bits (1141), Expect = 1.9e-121
Identity = 211/308 (68.51%), Postives = 247/308 (80.19%), Query Frame = 1 

Query: 2   SSRNTHWCYRCEQPVQLRGRDMVCASCNGGFVQELDEMMERDPLDFFGANGHEYHNRRLG 61
           S RNTHWCYRC +PV+L+G D VC  C+GGFVQELD+M+   PLDFFG +  E  ++RLG
Sbjct: 3   SGRNTHWCYRCRRPVRLQGEDAVCLYCSGGFVQELDDMVSVSPLDFFGLDNDEERDQRLG 62

Query: 62  LLELFSNFMRQRLIDRN--DMRGRLESIPDHGSGFGPWLIFGGQIPVRLSGHGGFEAFFN 121
           L+E FS FMR R+ DR+  D+RGR +S P+HG GFGP LIFGGQIP+RLSG+ GFEA F 
Sbjct: 63  LMEAFSAFMRHRMADRHSHDIRGRYDSTPEHGQGFGPLLIFGGQIPLRLSGNSGFEAIFG 122

Query: 122 GVPGIGVSRSNGGDYFIGPGLEELFEQLSANDRRGPPPASRSSIDAMPVVKITQRHIRSN 181
           G PG+G +R N GDYFIGPGLEELFEQLSAN RRGPPPA+RS+IDAMP V+ITQRH+RS+
Sbjct: 123 GAPGLGFARGNTGDYFIGPGLEELFEQLSANGRRGPPPAARSAIDAMPTVRITQRHLRSD 182

Query: 182 SHCPVCQDKFELGTEARKMPCDHMYHSDCIVPWLVQHNSCPVCRQELPAQGSGG--IHSS 241
           SHCPVCQDKFELG+EAR+MPC+H+YHSDCIVPWLVQHNSCPVCRQELP QGS    IH S
Sbjct: 183 SHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELPLQGSSSSRIHQS 242

Query: 242 SGSNNLSRNSRERENSRTNQGRRNPFSSLWPFRASSSDSNHSATTGSSSPALHESTQHQT 301
           S   + S +     + R NQGRRN FS  WPFR+S+S SNH+ TT SSSPA+HE+  H  
Sbjct: 243 SSGQSRSTSFGSNGSGRENQGRRNLFSGFWPFRSSNSSSNHNGTTESSSPAMHENNPHM- 302

Query: 302 GYSGWPFD 306
           GYSGWPFD
Sbjct: 303 GYSGWPFD 309

[Close]
BLAST of CmoCh06G009390 vs. NCBI nr
Match: gi|566174207|ref|XP_002308856.2| (zinc finger family protein [Populus trichocarpa])

HSP 1 Score: 443.7 bits (1140), Expect = 2.5e-121
Identity = 213/309 (68.93%), Postives = 249/309 (80.58%), Query Frame = 1 

Query: 2   SSRNTHWCYRCEQPVQLRGRDMVCASCNGGFVQELDEMMERDPLDFFGANGHEYHNRRLG 61
           SSRNTHWCY C +PV+LRGRD  C  C+GGFVQELD+M   +PLDFFG +G + H+   G
Sbjct: 3   SSRNTHWCYSCRRPVRLRGRDAACPYCSGGFVQELDDMHRINPLDFFGMDGDDDHDNMFG 62

Query: 62  LLELFSNFMRQRLIDRN---DMRGRLESIPDHGSGFGPWLIFGGQIPVRLSGHGGFEAFF 121
           L+E FS FMRQR+ DR+   D+R R +SIP+H  GFGP LIFGGQIP RLSG+GG EA F
Sbjct: 63  LMEAFSAFMRQRMADRSHNHDIRSRSDSIPEHNPGFGPLLIFGGQIPFRLSGNGGLEALF 122

Query: 122 NGVPGIGVSRSNGGDYFIGPGLEELFEQLSANDRRGPPPASRSSIDAMPVVKITQRHIRS 181
           +G PG+  +R N GDYF+GPGLEELFEQLSANDRRGP PA+RSSIDAMP VKITQRH+R+
Sbjct: 123 SGSPGVAFARGNAGDYFVGPGLEELFEQLSANDRRGPAPATRSSIDAMPTVKITQRHLRT 182

Query: 182 NSHCPVCQDKFELGTEARKMPCDHMYHSDCIVPWLVQHNSCPVCRQELPAQGSGGIHSSS 241
           +SHCPVC+DKFELG+EAR+MPC+H+YHSDCIVPWLVQHNSCPVCRQELP QGS   HS  
Sbjct: 183 DSHCPVCKDKFELGSEARQMPCNHLYHSDCIVPWLVQHNSCPVCRQELPPQGSNSGHSYQ 242

Query: 242 GSNNLSRNSR--ERENSRTNQGRRNPFSSLWPFRASSSDSNHSATTGSSSPALHESTQHQ 301
            S++ SRNS    RENSR  +GRRNP S LWPFR+S+S SNH  T GSSSP +HE+  HQ
Sbjct: 243 SSSSRSRNSNYSGRENSR--EGRRNPLSYLWPFRSSNSSSNHDETPGSSSPTMHEN-NHQ 302

Query: 302 TGYSGWPFD 306
            GYSGWPF+
Sbjct: 303 MGYSGWPFN 308

The following BLAST results are available for this feature:
BLAST of CmoCh06G009390 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RHC1A_ARATH1.4e-8754.57Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana GN=RHC1A PE=2... [more]
RING1_GOSHI8.6e-3734.12E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=1 SV=1[more]
RNG1L_ARATH1.5e-3331.29E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1... [more]
RDUF2_ARATH3.0e-2933.47E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana GN=DURF2 PE=1 SV=1[more]
RDUF1_ARATH1.5e-2832.10E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis thaliana GN=RDUF1 PE=1 SV=1[more]
BLAST of CmoCh06G009390 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LCH6_CUCSA2.6e-16590.49Uncharacterized protein OS=Cucumis sativus GN=Csa_3G822250 PE=4 SV=1[more]
V4SSL7_9ROSI1.4e-12168.51Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012279mg PE=4 SV=1[more]
B9HDT7_POPTR1.8e-12168.93Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0006s03070g PE=4 SV=2[more]
A0A067EQC1_CITSI3.9e-12168.18Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g021656mg PE=4 SV=1[more]
B9IHK2_POPTR2.0e-12068.28Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0016s02910g PE=4 SV=1[more]
BLAST of CmoCh06G009390 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G40830.27.9e-8954.57 RING-H2 finger C1A[more]
AT3G56580.21.9e-8251.62 RING/U-box superfamily protein[more]
AT3G10815.18.6e-3547.17 RING/U-box superfamily protein[more]
AT3G19950.18.6e-3531.29 RING/U-box superfamily protein[more]
AT1G60360.14.4e-3133.33 RING/U-box superfamily protein[more]
BLAST of CmoCh06G009390 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449437755|ref|XP_004136656.1|3.7e-16590.49PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis sativus][more]
gi|659085191|ref|XP_008443292.1|4.1e-16489.84PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis melo][more]
gi|568856863|ref|XP_006481992.1|3.9e-12268.83PREDICTED: E3 ubiquitin-protein ligase RING1-like [Citrus sinensis][more]
gi|567875731|ref|XP_006430455.1|1.9e-12168.51hypothetical protein CICLE_v10012279mg [Citrus clementina][more]
gi|566174207|ref|XP_002308856.2|2.5e-12168.93zinc finger family protein [Populus trichocarpa][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0008152 metabolic process
biological_process GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process
biological_process GO:0000209 protein polyubiquitination
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0016874 ligase activity
molecular_function GO:0061630 ubiquitin protein ligase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh06G009390.1CmoCh06G009390.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 181..223
score: 1.9
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 182..222
score: 2.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 182..223
score: 12
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 178..227
score: 1.4
NoneNo IPR availablePANTHERPTHR22763RING ZINC FINGER PROTEINcoord: 4..305
score: 2.7E
NoneNo IPR availablePANTHERPTHR22763:SF44E3 UBIQUITIN LIGASEcoord: 4..305
score: 2.7E
NoneNo IPR availablePFAMPF14369zinc_ribbon_9coord: 5..36
score: 5.
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 162..229
score: 4.86